AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588730 MtrunA17_Chr4g0005091 83.648 159 12 1 149 307 32 176 1.13e-89 265
Msa0588730 MtrunA17_Chr4g0005091 69.286 140 35 3 3 136 1 138 2.44e-57 182
Msa0588730 MtrunA17_Chr4g0005111 70.466 193 43 3 1 184 1 188 4.88e-88 261
Msa0588730 MtrunA17_Chr4g0005111 76.101 159 37 1 149 307 34 191 1.44e-83 250
Msa0588730 MtrunA17_Chr4g0005131 72.327 159 43 1 149 306 33 191 5.68e-79 238
Msa0588730 MtrunA17_Chr4g0005131 52.047 171 76 2 17 181 16 186 1.27e-50 166
Msa0588730 MtrunA17_Chr4g0005071 58.791 182 70 2 127 306 18 196 2.40e-69 214
Msa0588730 MtrunA17_Chr4g0005071 47.514 181 78 5 14 181 15 191 4.28e-44 149
Msa0588730 MtrunA17_Chr4g0005081 60.116 173 64 2 136 306 28 197 1.42e-67 209
Msa0588730 MtrunA17_Chr4g0005081 47.253 182 78 5 14 181 15 192 3.02e-44 149
Msa0588730 MtrunA17_Chr4g0005031 61.589 151 58 0 156 306 71 221 2.86e-63 199
Msa0588730 MtrunA17_Chr4g0005031 43.716 183 83 5 15 181 38 216 3.63e-39 137
Msa0588730 MtrunA17_Chr7g0243501 54.802 177 79 1 130 306 17 192 1.17e-62 196
Msa0588730 MtrunA17_Chr7g0243501 43.716 183 96 3 6 181 5 187 2.24e-41 142
Msa0588730 MtrunA17_Chr4g0005011 54.913 173 71 3 136 306 30 197 5.67e-61 192
Msa0588730 MtrunA17_Chr4g0005011 50.318 157 64 6 15 157 16 172 9.02e-38 132
Msa0588730 MtrunA17_Chr4g0005041 60.000 155 58 2 154 306 46 198 1.42e-60 191
Msa0588730 MtrunA17_Chr4g0005041 43.889 180 85 6 15 181 17 193 3.42e-40 139
Msa0588730 MtrunA17_Chr1g0175911 53.125 160 71 2 149 306 35 192 5.41e-53 172
Msa0588730 MtrunA17_Chr1g0175911 39.869 153 74 3 9 149 10 156 7.31e-29 109
Msa0588730 MtrunA17_Chr7g0259071 44.156 154 84 2 154 306 39 191 2.60e-43 147
Msa0588730 MtrunA17_Chr7g0259071 32.584 178 110 5 13 183 14 188 2.63e-25 100
Msa0588730 MtrunA17_Chr7g0259091 44.099 161 86 3 149 306 35 194 1.46e-41 142
Msa0588730 MtrunA17_Chr7g0259091 32.609 184 115 5 6 181 7 189 5.62e-25 99.4
Msa0588730 MtrunA17_Chr7g0259101 44.099 161 86 3 149 306 35 194 9.24e-40 143
Msa0588730 MtrunA17_Chr7g0259101 42.236 161 89 3 149 306 234 393 2.78e-38 139
Msa0588730 MtrunA17_Chr7g0259101 33.696 184 113 5 6 181 7 189 2.43e-24 101
Msa0588730 MtrunA17_Chr7g0259101 33.333 171 105 5 19 181 219 388 1.51e-22 96.7
Msa0588730 MtrunA17_Chr7g0259121 43.671 158 80 3 156 306 38 193 1.41e-39 138
Msa0588730 MtrunA17_Chr7g0259121 34.810 158 86 3 41 189 38 187 2.35e-19 84.7
Msa0588730 MtrunA17_Chr1g0177051 45.395 152 81 2 155 305 35 185 1.83e-39 137
Msa0588730 MtrunA17_Chr1g0177051 34.694 147 91 4 40 181 35 181 6.92e-20 85.5
Msa0588730 MtrunA17_Chr4g0037481 42.857 154 85 2 155 306 40 192 2.07e-38 134
Msa0588730 MtrunA17_Chr4g0037481 33.108 148 93 3 40 181 40 187 8.09e-23 93.6
Msa0588730 MtrunA17_Chr3g0085311 39.873 158 93 1 148 305 33 188 4.67e-34 123
Msa0588730 MtrunA17_Chr3g0085311 30.159 189 115 6 9 186 7 189 3.28e-17 78.2
Msa0588730 MtrunA17_Chr3g0085301 38.272 162 98 2 144 305 34 193 1.23e-32 119
Msa0588730 MtrunA17_Chr3g0085301 33.333 129 81 3 34 157 39 167 4.35e-16 75.1
Msa0588730 MtrunA17_Chr3g0085321 37.975 158 96 1 148 305 33 188 2.01e-32 119
Msa0588730 MtrunA17_Chr3g0085321 34.615 156 90 5 9 156 7 158 8.10e-21 88.2
Msa0588730 MtrunA17_Chr4g0040551 36.774 155 96 2 153 307 34 186 2.44e-32 118
Msa0588730 MtrunA17_Chr4g0040551 31.613 155 90 4 14 157 9 158 7.93e-19 82.4
Msa0588730 MtrunA17_Chr3g0085291 38.608 158 93 1 148 305 33 186 6.92e-32 117
Msa0588730 MtrunA17_Chr3g0085291 28.966 145 102 1 43 186 43 187 5.01e-16 75.1
Msa0588730 MtrunA17_Chr3g0136641 40.260 154 84 3 158 306 38 188 1.90e-31 116
Msa0588730 MtrunA17_Chr3g0136641 33.962 106 68 2 78 181 78 183 1.29e-12 65.5
Msa0588730 MtrunA17_Chr3g0090231 36.774 155 96 2 153 307 34 186 2.63e-31 115
Msa0588730 MtrunA17_Chr3g0090231 32.450 151 96 4 13 157 8 158 1.03e-18 82.4
Msa0588730 MtrunA17_Chr5g0446751 40.132 152 83 3 161 306 40 189 4.22e-31 115
Msa0588730 MtrunA17_Chr5g0446751 27.419 186 114 6 9 181 7 184 8.74e-15 71.6
Msa0588730 MtrunA17_Chr3g0136631 39.474 152 89 2 158 306 38 189 2.01e-30 113
Msa0588730 MtrunA17_Chr3g0136631 30.625 160 94 6 11 157 7 162 8.35e-13 65.9
Msa0588730 MtrunA17_Chr4g0068381 34.459 148 97 0 159 306 33 180 2.25e-23 94.7
Msa0588730 MtrunA17_Chr4g0068391 35.484 155 97 3 154 306 27 180 3.20e-23 94.4
Msa0588730 MtrunA17_Chr4g0024951 30.612 147 102 0 158 304 30 176 1.46e-17 79.0
Msa0588730 MtrunA17_Chr4g0024961 33.083 133 89 0 155 287 27 159 6.33e-17 77.0
Msa0588730 MtrunA17_Chr1g0169281 37.079 89 55 1 194 282 142 229 9.54e-12 63.9
Msa0588730 MtrunA17_Chr1g0169291 38.202 89 54 1 194 282 136 223 3.60e-11 62.4
Msa0588730 MtrunA17_Chr1g0169511 38.202 89 54 1 194 282 136 223 3.85e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588730 AT1G58170.1 57.237 152 65 0 155 306 34 185 2.79e-61 193
Msa0588730 AT1G58170.1 36.548 197 97 5 3 189 1 179 8.82e-34 122
Msa0588730 AT5G49040.1 51.656 151 73 0 156 306 41 191 1.15e-50 166
Msa0588730 AT5G49040.1 37.349 166 93 4 18 174 16 179 9.65e-26 101
Msa0588730 AT1G55210.1 52.288 153 70 1 154 306 38 187 4.29e-50 164
Msa0588730 AT1G55210.1 37.778 180 103 5 7 179 3 180 1.32e-32 119
Msa0588730 AT1G55210.2 52.288 153 70 1 154 306 38 187 4.29e-50 164
Msa0588730 AT1G55210.2 37.778 180 103 5 7 179 3 180 1.32e-32 119
Msa0588730 AT3G13650.1 54.305 151 66 1 156 306 39 186 9.43e-50 164
Msa0588730 AT3G13650.1 41.463 164 89 4 21 179 18 179 7.68e-32 117
Msa0588730 AT1G65870.1 47.586 145 76 0 161 305 45 189 3.44e-44 149
Msa0588730 AT1G65870.1 32.886 149 91 3 40 181 39 185 1.09e-20 88.2
Msa0588730 AT5G42510.1 45.033 151 79 2 156 305 35 182 1.84e-41 142
Msa0588730 AT5G42510.1 39.516 124 68 3 41 157 35 158 3.10e-21 89.4
Msa0588730 AT3G13660.1 57.627 118 50 0 189 306 8 125 3.08e-41 139
Msa0588730 AT3G13660.1 46.226 106 56 1 77 181 15 120 1.63e-23 93.6
Msa0588730 AT5G42500.1 46.575 146 74 2 161 305 43 185 3.43e-41 141
Msa0588730 AT5G42500.1 41.176 119 63 3 46 157 43 161 1.29e-21 90.5
Msa0588730 AT1G22900.1 44.720 161 85 2 147 305 35 193 5.47e-40 139
Msa0588730 AT1G22900.1 37.903 124 70 2 41 157 46 169 3.85e-18 81.3
Msa0588730 AT3G13662.1 48.551 138 68 2 156 293 38 172 1.84e-38 134
Msa0588730 AT3G13662.1 45.536 112 56 2 41 149 38 147 1.47e-25 100
Msa0588730 AT5G49030.3 52.308 130 62 0 156 285 41 170 2.00e-38 145
Msa0588730 AT5G49030.3 40.580 138 76 2 18 149 16 153 2.65e-22 97.8
Msa0588730 AT2G21100.1 41.379 145 85 0 161 305 43 187 1.21e-36 130
Msa0588730 AT2G21100.1 31.724 145 94 2 42 181 39 183 1.84e-19 84.7
Msa0588730 AT2G21100.2 41.379 145 85 0 161 305 43 187 1.21e-36 130
Msa0588730 AT2G21100.2 31.724 145 94 2 42 181 39 183 1.84e-19 84.7
Msa0588730 AT3G58090.1 49.091 110 56 0 196 305 162 271 1.13e-33 124
Msa0588730 AT3G58090.1 34.286 105 68 1 78 181 163 267 2.21e-16 78.2
Msa0588730 AT2G21110.1 35.526 152 90 2 161 306 37 186 1.82e-26 103
Msa0588730 AT4G38700.1 36.774 155 92 4 158 306 36 190 6.54e-26 102
Msa0588730 AT4G38700.1 33.117 154 83 8 8 149 7 152 3.85e-12 64.7

Find 67 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTTCTTCTGAACAATTT+AGG 0.169887 4_2:+11195791 None:intergenic
ACCTCAATTAAGCTCAAAAT+TGG 0.209518 4_2:-11190563 Msa0588730:CDS
AATTGAGGTCCCAAGGTTAA+AGG 0.261485 4_2:+11190577 None:intergenic
CTTGCCAGTAAAACCTAAAA+TGG 0.269774 4_2:+11190701 None:intergenic
ACCTCAATTGAGCTCAAAAT+TGG 0.270077 4_2:-11195624 Msa0588730:CDS
TACAACAAAACTAGTGTCTT+TGG 0.286125 4_2:-11190622 Msa0588730:CDS
ATGAACTTTGCTTTGTTTGA+AGG 0.312911 4_2:-11190478 Msa0588730:CDS
TGGAAGCACAATTACTATCT+TGG 0.342636 4_2:-11195507 Msa0588730:CDS
TTATTTGAAGGGAAATATAA+TGG 0.360119 4_2:-11195527 Msa0588730:CDS
TTAGCCACTTTAGATTCTAT+TGG 0.363260 4_2:-11195763 Msa0588730:CDS
AAGAAATGTTGCTAACAATA+AGG 0.372275 4_2:-11190422 Msa0588730:CDS
AAGCTCAGTTTGTGAGGTAT+AGG 0.375610 4_2:+11195577 None:intergenic
ATTGAGGTCCCAAGGTTAAA+GGG 0.403414 4_2:+11190578 None:intergenic
ATTGTAGCATCTCCTGTGTT+GGG 0.408338 4_2:+11190316 None:intergenic
CAAAACTAGTGTCTTTGGTT+TGG 0.408752 4_2:-11190617 Msa0588730:CDS
CATAGACAACCCTTTAACCT+TGG 0.413576 4_2:-11190587 Msa0588730:CDS
GGAAGCACAATTACTATCTT+GGG 0.437728 4_2:-11195506 Msa0588730:CDS
ATCTATTGATCCCACGAAAC+CGG 0.454018 4_2:+11195814 None:intergenic
GGAAGCACCATTACTATCTC+AGG 0.463647 4_2:-11190445 Msa0588730:CDS
ATAGACAACCCTTTAACCTT+GGG 0.475322 4_2:-11190586 Msa0588730:CDS
AAGAAATGATGCTTATGAAA+AGG 0.476165 4_2:-11195483 Msa0588730:CDS
CGATATCATTTCATCACTCC+CGG 0.488990 4_2:-11190647 Msa0588730:CDS
CAATTAAGCTCAAAATTGGT+TGG 0.492370 4_2:-11190559 Msa0588730:CDS
CGTGAGCTCAATAGATCCTA+CGG 0.502198 4_2:-11190749 Msa0588730:intron
AAATTGGTTGGAAGGGCTCA+AGG 0.505137 4_2:-11195608 Msa0588730:CDS
AATTGTAGCATCTCCTGTGT+TGG 0.505578 4_2:+11190315 None:intergenic
ATGCCTGTGATTGGTGGAAG+TGG 0.514663 4_2:-11190391 Msa0588730:CDS
CATAGACAACGCTTTAACCT+CGG 0.517171 4_2:-11195648 Msa0588730:CDS
TGAGCTCAAAATTGGTTGGA+AGG 0.519356 4_2:-11195616 Msa0588730:CDS
GAATGAGGTTGCGTTGTCTC+CGG 0.519443 4_2:+11190669 None:intergenic
TAAGCTCAAAATTGGTTGGA+AGG 0.519962 4_2:-11190555 Msa0588730:CDS
CAATTGAGCTCAAAATTGGT+TGG 0.529085 4_2:-11195620 Msa0588730:CDS
TACTGGCAAGACATAGTGGC+CGG 0.532781 4_2:-11190688 Msa0588730:CDS
AAATTGGTTGGAAGGGCTCA+AGG 0.537046 4_2:-11190547 Msa0588730:CDS
AAGCTCAAAATTGGTTGGAA+GGG 0.537380 4_2:-11190554 Msa0588730:CDS
CATGCCAATAGAATCTAAAG+TGG 0.545838 4_2:+11195759 None:intergenic
TGAGCTTAATTGAGGTCCCA+AGG 0.547843 4_2:+11190570 None:intergenic
GTTAGAGAAATGCCTGTGAT+TGG 0.553503 4_2:-11190400 Msa0588730:CDS
GTTAGAGAAATGCCTGTGAT+TGG 0.553503 4_2:-11195461 Msa0588730:intron
ACAAGATGAGACCGGTTTCG+TGG 0.556174 4_2:-11195825 Msa0588730:CDS
AAGTTTAACACAACAAACTT+CGG 0.557297 4_2:-11195683 Msa0588730:intron
ATAGACAACGCTTTAACCTC+GGG 0.557789 4_2:-11195647 Msa0588730:CDS
TGTCCTCTTTGGAAAACCGT+AGG 0.559796 4_2:+11190733 None:intergenic
GTTGTGTTAAACTTCGGAAG+AGG 0.562627 4_2:+11195692 None:intergenic
GTGTTAAACTTCGGAAGAGG+TGG 0.563949 4_2:+11195695 None:intergenic
AAAATTAAGCTCAGTTTGTG+AGG 0.564947 4_2:+11195571 None:intergenic
GGGTGTAACAAGAAAGGAGA+AGG 0.565271 4_2:+11195864 None:intergenic
TTGTGAGGGTGTAACAAGAA+AGG 0.567784 4_2:+11195858 None:intergenic
ATTTCTTCCTGAGATAGTAA+TGG 0.568336 4_2:+11190438 None:intergenic
AAGTTTGTTGTGTTAAACTT+CGG 0.573223 4_2:+11195686 None:intergenic
CAAGATGAGACCGGTTTCGT+GGG 0.576259 4_2:-11195824 Msa0588730:CDS
GAGCTCAAAATTGGTTGGAA+GGG 0.580534 4_2:-11195615 Msa0588730:CDS
AATCATAAGAAAATTGAGCT+CGG 0.585922 4_2:+11190501 None:intergenic
ACTCCACTTCCACCAATCAC+AGG 0.589329 4_2:+11190388 None:intergenic
AGTCCACTTCCACCAATCAC+AGG 0.592137 4_2:+11195449 None:intergenic
AGAGAAATGCCTGTGATTGG+TGG 0.594056 4_2:-11190397 Msa0588730:CDS
AATTGGTTGGAAGGGCTCAA+GGG 0.595873 4_2:-11195607 Msa0588730:CDS
CTTGTGCAGTGACGATTGTG+AGG 0.610302 4_2:+11195843 None:intergenic
TACTCTTCTAATCCCAACAC+AGG 0.612298 4_2:-11190328 Msa0588730:CDS
TTGTTTGAAGGAAAGTACAA+TGG 0.617673 4_2:-11190466 Msa0588730:CDS
GAGCTCGGTTTGTGAAGTAG+AGG 0.618249 4_2:+11190516 None:intergenic
GTCACTGCACAAGATGAGAC+CGG 0.630861 4_2:-11195833 Msa0588730:CDS
TGATGAAATGATATCGAATG+AGG 0.649583 4_2:+11190654 None:intergenic
TGAGCTCAATTGAGGTCCCG+AGG 0.649605 4_2:+11195631 None:intergenic
TGGAATAATTTCGATCGCGG+TGG 0.668764 4_2:+11195715 None:intergenic
AGGTGGAATAATTTCGATCG+CGG 0.693640 4_2:+11195712 None:intergenic
TTGTGCAGTGACGATTGTGA+GGG 0.713813 4_2:+11195844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATATATAATATAT+AGG + chr4_2:11192306-11192325 None:intergenic 0.0%
!! TTGTATTATTATTCAATTAA+AGG + chr4_2:11191234-11191253 None:intergenic 10.0%
!!! CAAAAAAAAAATATTTTACA+GGG + chr4_2:11191323-11191342 None:intergenic 10.0%
!!! TCAAAAAAAAAATATTTTAC+AGG + chr4_2:11191324-11191343 None:intergenic 10.0%
!!! AAAACAAAAATATTTTATAG+GGG + chr4_2:11191352-11191371 None:intergenic 10.0%
!!! CAAAACAAAAATATTTTATA+GGG + chr4_2:11191353-11191372 None:intergenic 10.0%
!!! TCAAAACAAAAATATTTTAT+AGG + chr4_2:11191354-11191373 None:intergenic 10.0%
!!! AAATCAAAAAAATATTTTAC+AGG - chr4_2:11191486-11191505 Msa0588730:intron 10.0%
!!! AATCAAAAAAATATTTTACA+GGG - chr4_2:11191487-11191506 Msa0588730:intron 10.0%
!!! TTTTTATATAATTCTTTACT+TGG - chr4_2:11192321-11192340 Msa0588730:intron 10.0%
!! ATTAAACATACATAATAATA+GGG - chr4_2:11193220-11193239 Msa0588730:intron 10.0%
!!! TGATTTTTATAATAGAAATA+GGG + chr4_2:11193930-11193949 None:intergenic 10.0%
!!! ATGATTTTTATAATAGAAAT+AGG + chr4_2:11193931-11193950 None:intergenic 10.0%
!!! TGATTTTTATAATAGAAATA+GGG + chr4_2:11193930-11193949 None:intergenic 10.0%
!!! ATGATTTTTATAATAGAAAT+AGG + chr4_2:11193931-11193950 None:intergenic 10.0%
!! GAGAAAAAAAATAATTAAAA+TGG - chr4_2:11195321-11195340 Msa0588730:intron 10.0%
!!! TACAAGACATAATTTTAATA+TGG - chr4_2:11191249-11191268 Msa0588730:intron 15.0%
!!! ACAAGACATAATTTTAATAT+GGG - chr4_2:11191250-11191269 Msa0588730:intron 15.0%
!!! AAACAAAAATATTTTATAGG+GGG + chr4_2:11191351-11191370 None:intergenic 15.0%
!! AAAAATATTAAAAGGGTTAA+TGG + chr4_2:11191554-11191573 None:intergenic 15.0%
!! GTTCTTCAAAAATATTAAAA+GGG + chr4_2:11191561-11191580 None:intergenic 15.0%
!! TGTTCTTCAAAAATATTAAA+AGG + chr4_2:11191562-11191581 None:intergenic 15.0%
!!! TTTTTTTTTATGTGAACTAA+CGG + chr4_2:11192282-11192301 None:intergenic 15.0%
!! AATTTAGAAGAAGATTTAAA+GGG + chr4_2:11192872-11192891 None:intergenic 15.0%
!! AAATTTAGAAGAAGATTTAA+AGG + chr4_2:11192873-11192892 None:intergenic 15.0%
!! CATTAAACATACATAATAAT+AGG - chr4_2:11193219-11193238 Msa0588730:intron 15.0%
!!! CCAAACTAAAAAAAATATTT+TGG + chr4_2:11193469-11193488 None:intergenic 15.0%
!!! CCAAAATATTTTTTTTAGTT+TGG - chr4_2:11193466-11193485 Msa0588730:intron 15.0%
!!! ATATTTTTTTTAGTTTGGTT+TGG - chr4_2:11193471-11193490 Msa0588730:intron 15.0%
!!! GATTTTTATAATAGAAATAG+GGG + chr4_2:11193929-11193948 None:intergenic 15.0%
!! CCAATTAATGTATTATATTT+GGG + chr4_2:11193969-11193988 None:intergenic 15.0%
!! ACCAATTAATGTATTATATT+TGG + chr4_2:11193970-11193989 None:intergenic 15.0%
!!! GATTTTTATAATAGAAATAG+GGG + chr4_2:11193929-11193948 None:intergenic 15.0%
!! CCAATTAATGTATTATATTT+GGG + chr4_2:11193969-11193988 None:intergenic 15.0%
!! ACCAATTAATGTATTATATT+TGG + chr4_2:11193970-11193989 None:intergenic 15.0%
!!! TGTGTGTATAATTTTTAATA+CGG + chr4_2:11194435-11194454 None:intergenic 15.0%
!!! TTTTTTTTTTTTGAGAGATA+CGG - chr4_2:11194510-11194529 Msa0588730:intron 15.0%
!! ACTACAATTAATTATATTCA+AGG - chr4_2:11195156-11195175 Msa0588730:intron 15.0%
!! AAAAATAATTAAAATGGCTA+TGG - chr4_2:11195327-11195346 Msa0588730:intron 15.0%
!! AAAATAATTAAAATGGCTAT+GGG - chr4_2:11195328-11195347 Msa0588730:intron 15.0%
!!! ATGAATTTTGCATTATTTGA+AGG - chr4_2:11190639-11190658 Msa0588730:CDS 20.0%
!!! TGAATTTTGCATTATTTGAA+GGG - chr4_2:11190640-11190659 Msa0588730:CDS 20.0%
!! TTATTTGAAGGGAAATATAA+TGG - chr4_2:11190651-11190670 Msa0588730:CDS 20.0%
!! AAATACACACAAATAAACAA+GGG + chr4_2:11191011-11191030 None:intergenic 20.0%
!!! TTTTTTTTCTTCAGAAATTC+TGG - chr4_2:11191414-11191433 Msa0588730:intron 20.0%
!! GTAAATCAAAACAAATTACA+GGG - chr4_2:11191460-11191479 Msa0588730:intron 20.0%
!! TAAATCAAAACAAATTACAG+GGG - chr4_2:11191461-11191480 Msa0588730:intron 20.0%
!!! GTTAATTTATTTTAGACTAC+CGG + chr4_2:11192011-11192030 None:intergenic 20.0%
!! ACTATCAAAAAATCAATTTG+TGG + chr4_2:11192058-11192077 None:intergenic 20.0%
!!! TTTTTTTTATGTGAACTAAC+GGG + chr4_2:11192281-11192300 None:intergenic 20.0%
!! TAAATAAATTACGTTCGTTA+TGG + chr4_2:11192470-11192489 None:intergenic 20.0%
!!! TCTTATTTATAAGAGAAAGT+TGG - chr4_2:11192653-11192672 Msa0588730:intron 20.0%
!! TCAATAAATATTGATGTATC+TGG - chr4_2:11192677-11192696 Msa0588730:intron 20.0%
!! AATTGCTTAAAATAAAGCAA+GGG + chr4_2:11192809-11192828 None:intergenic 20.0%
!! AAATTGCTTAAAATAAAGCA+AGG + chr4_2:11192810-11192829 None:intergenic 20.0%
!!! TGCTTTATTTTAAGCAATTT+CGG - chr4_2:11192810-11192829 Msa0588730:intron 20.0%
!!! ATATTTTGGTTTGATTTGTT+TGG + chr4_2:11193455-11193474 None:intergenic 20.0%
!! CCCAAATATAATACATTAAT+TGG - chr4_2:11193966-11193985 Msa0588730:intron 20.0%
!! CCCAAATATAATACATTAAT+TGG - chr4_2:11193966-11193985 Msa0588730:intron 20.0%
!! TATTATTTACTTAATCGAGA+AGG + chr4_2:11194984-11195003 None:intergenic 20.0%
!!! TTTTTAGAAAGGAATATTCA+AGG - chr4_2:11195186-11195205 Msa0588730:intron 20.0%
!!! AAGTTTGTTGTGTTAAACTT+CGG + chr4_2:11190495-11190514 None:intergenic 25.0%
! AAGTTTAACACAACAAACTT+CGG - chr4_2:11190495-11190514 Msa0588730:CDS 25.0%
! AAGAAATGATGCTTATGAAA+AGG - chr4_2:11190695-11190714 Msa0588730:CDS 25.0%
! CAAATACACACAAATAAACA+AGG + chr4_2:11191012-11191031 None:intergenic 25.0%
!! TGGAAGAAACATACTATTTT+AGG + chr4_2:11191193-11191212 None:intergenic 25.0%
! GGTAAACAAAATGAAAAGAA+TGG + chr4_2:11191213-11191232 None:intergenic 25.0%
!! GTTTTTGAATGACCTATTAA+GGG - chr4_2:11191436-11191455 Msa0588730:intron 25.0%
!! TTTTTGAATGACCTATTAAG+GGG - chr4_2:11191437-11191456 Msa0588730:intron 25.0%
! GGTAAATCAAAACAAATTAC+AGG - chr4_2:11191459-11191478 Msa0588730:intron 25.0%
! AAATCAAAACAAATTACAGG+GGG - chr4_2:11191462-11191481 Msa0588730:intron 25.0%
!!! CTTGTAATATAGGTCATTTT+CGG + chr4_2:11191520-11191539 None:intergenic 25.0%
! GAAAATGACCTATATTACAA+GGG - chr4_2:11191519-11191538 Msa0588730:intron 25.0%
! AAAATGACCTATATTACAAG+GGG - chr4_2:11191520-11191539 Msa0588730:intron 25.0%
! AATTCTGTTAACTAATGATG+TGG - chr4_2:11191797-11191816 Msa0588730:intron 25.0%
!!! GCAAAAGTTTTATGTTGATA+AGG - chr4_2:11191819-11191838 Msa0588730:intron 25.0%
! AAAGTAGAAAATTGTCAAAG+TGG - chr4_2:11191870-11191889 Msa0588730:intron 25.0%
! CTTAAAGCCCTATAAAAATT+CGG + chr4_2:11192202-11192221 None:intergenic 25.0%
!!! TTAAAAAAAAGTACTCCATC+CGG - chr4_2:11192630-11192649 Msa0588730:intron 25.0%
! CTTTCTCTTATAAATAAGAC+CGG + chr4_2:11192652-11192671 None:intergenic 25.0%
! TAACAACAATATCTCACAAA+AGG + chr4_2:11192849-11192868 None:intergenic 25.0%
! AGATAGATATAGGTACAATT+TGG + chr4_2:11192975-11192994 None:intergenic 25.0%
! AGATAGATACAACTTAATGA+AGG - chr4_2:11193064-11193083 Msa0588730:intron 25.0%
! TGGTTATGAATTGTTTGATT+TGG + chr4_2:11193342-11193361 None:intergenic 25.0%
! ACTGCAAACTCAATAATAAA+CGG + chr4_2:11193507-11193526 None:intergenic 25.0%
! AGAATTGACATACAAGTTAA+TGG + chr4_2:11193533-11193552 None:intergenic 25.0%
! TTATTTCAACAAACTCAACT+CGG - chr4_2:11193715-11193734 Msa0588730:intron 25.0%
! TAAAAAATATTACTCGAGTC+CGG - chr4_2:11194378-11194397 Msa0588730:intron 25.0%
! TTCAATTGACAATTAACCTA+CGG - chr4_2:11194477-11194496 Msa0588730:intron 25.0%
!! AAAAAAAAGTACAATACCGT+AGG + chr4_2:11194496-11194515 None:intergenic 25.0%
!! ACTAGCATTTTAAATTCTAC+AGG + chr4_2:11194716-11194735 None:intergenic 25.0%
! AAAAATTTATTTATGCCCCT+CGG - chr4_2:11194749-11194768 Msa0588730:intron 25.0%
!! TATCTAAGATGCTAGAAAAA+AGG + chr4_2:11194870-11194889 None:intergenic 25.0%
!!! AAGGCTACATTTTTTTAGAA+AGG - chr4_2:11195175-11195194 Msa0588730:intron 25.0%
! AATCATAAGAAAATTGAGCT+CGG + chr4_2:11195680-11195699 None:intergenic 25.0%
! AAGAAATGTTGCTAACAATA+AGG - chr4_2:11195756-11195775 Msa0588730:intron 25.0%
TGTCTTCTTCTGAACAATTT+AGG + chr4_2:11190390-11190409 None:intergenic 30.0%
! TTAGCCACTTTAGATTCTAT+TGG - chr4_2:11190415-11190434 Msa0588730:CDS 30.0%
AAAATTAAGCTCAGTTTGTG+AGG + chr4_2:11190610-11190629 None:intergenic 30.0%
!!! TGGACTTTTTAGATTTGCTA+AGG - chr4_2:11190746-11190765 Msa0588730:intron 30.0%
!!! GGACTTTTTAGATTTGCTAA+GGG - chr4_2:11190747-11190766 Msa0588730:intron 30.0%
TACTATTTGAATACCACTAC+AGG - chr4_2:11190789-11190808 Msa0588730:intron 30.0%
TGTTTCTTAGTTTCCTATCA+TGG - chr4_2:11190924-11190943 Msa0588730:intron 30.0%
!!! TTTTGATTTAACCCCCTAAT+AGG - chr4_2:11191368-11191387 Msa0588730:intron 30.0%
! TTTTTGAATGACCTATTAGG+GGG + chr4_2:11191382-11191401 None:intergenic 30.0%
! GTTTTTGAATGACCTATTAG+GGG + chr4_2:11191383-11191402 None:intergenic 30.0%
! GGTTTTTGAATGACCTATTA+GGG + chr4_2:11191435-11191454 None:intergenic 30.0%
! TGGTTTTTGAATGACCTATT+AGG + chr4_2:11191434-11191453 None:intergenic 30.0%
! GGTTTTTGAATGACCTATTA+AGG - chr4_2:11191435-11191454 Msa0588730:intron 30.0%
! TTTTGAATGACCTATTAAGG+GGG - chr4_2:11191438-11191457 Msa0588730:intron 30.0%
!!! TTTTGATTTACCCCCTTAAT+AGG + chr4_2:11191451-11191470 None:intergenic 30.0%
CGAAAATGACCTATATTACA+AGG - chr4_2:11191518-11191537 Msa0588730:intron 30.0%
AAATGACCTATATTACAAGG+GGG - chr4_2:11191521-11191540 Msa0588730:intron 30.0%
TATGTAGAAAAGCTTGTGTA+TGG + chr4_2:11191626-11191645 None:intergenic 30.0%
! TTATGTTGATAAGGAGTATG+AGG - chr4_2:11191828-11191847 Msa0588730:intron 30.0%
!!! ACGTATATTGAGTTGAGTTT+TGG + chr4_2:11191904-11191923 None:intergenic 30.0%
CATTATTTGTATCATCATCG+TGG - chr4_2:11192082-11192101 Msa0588730:intron 30.0%
AAATTCGGACCCATTATTTA+AGG + chr4_2:11192187-11192206 None:intergenic 30.0%
!! TAATGGGTCCGAATTTTTAT+AGG - chr4_2:11192191-11192210 Msa0588730:intron 30.0%
! AATGGGTCCGAATTTTTATA+GGG - chr4_2:11192192-11192211 Msa0588730:intron 30.0%
TCAACAAAACTTGATGTATC+TGG + chr4_2:11192716-11192735 None:intergenic 30.0%
ATACACACATATACTCCTTT+CGG + chr4_2:11192763-11192782 None:intergenic 30.0%
! ATATAGGTACAATTTGGTGA+AGG + chr4_2:11192969-11192988 None:intergenic 30.0%
AGATCAAGAGAGATAGATAT+AGG + chr4_2:11192985-11193004 None:intergenic 30.0%
ACTGATGAATCAATAAGAAC+TGG - chr4_2:11193428-11193447 Msa0588730:intron 30.0%
!! TTAGTTTGGTTTGGTTTGTT+TGG - chr4_2:11193480-11193499 Msa0588730:intron 30.0%
TCAATTGAAGTAAGAGATAG+TGG - chr4_2:11193665-11193684 Msa0588730:intron 30.0%
GTTAACATTTGCCTAGAAAT+AGG + chr4_2:11193746-11193765 None:intergenic 30.0%
!! CATGTTAACTTGTGTCATAA+GGG + chr4_2:11193905-11193924 None:intergenic 30.0%
!! TCATGTTAACTTGTGTCATA+AGG + chr4_2:11193906-11193925 None:intergenic 30.0%
!! CATGTTAACTTGTGTCATAA+GGG + chr4_2:11193905-11193924 None:intergenic 30.0%
!! TCATGTTAACTTGTGTCATA+AGG + chr4_2:11193906-11193925 None:intergenic 30.0%
! AGTATTCAGACCTTTTTCTA+AGG - chr4_2:11194941-11194960 Msa0588730:intron 30.0%
! GTATTCAGACCTTTTTCTAA+GGG - chr4_2:11194942-11194961 Msa0588730:intron 30.0%
! TATTCAGACCTTTTTCTAAG+GGG - chr4_2:11194943-11194962 Msa0588730:intron 30.0%
ACTAATTTCCCCTTAGAAAA+AGG + chr4_2:11194954-11194973 None:intergenic 30.0%
GATCAATTCACTTGCAAATT+AGG - chr4_2:11195081-11195100 Msa0588730:intron 30.0%
! ATCCCCATTCTAAAGAAATT+CGG + chr4_2:11195107-11195126 None:intergenic 30.0%
!!! GTTTTTTACTCCAACAAAAG+TGG + chr4_2:11195301-11195320 None:intergenic 30.0%
TGATGAAATGATATCGAATG+AGG + chr4_2:11195527-11195546 None:intergenic 30.0%
TACAACAAAACTAGTGTCTT+TGG - chr4_2:11195556-11195575 Msa0588730:CDS 30.0%
ACCTCAATTAAGCTCAAAAT+TGG - chr4_2:11195615-11195634 Msa0588730:CDS 30.0%
! ACCAATTTTGAGCTTAATTG+AGG + chr4_2:11195619-11195638 None:intergenic 30.0%
CAATTAAGCTCAAAATTGGT+TGG - chr4_2:11195619-11195638 Msa0588730:CDS 30.0%
!! ATGAACTTTGCTTTGTTTGA+AGG - chr4_2:11195700-11195719 Msa0588730:CDS 30.0%
! TTGTTTGAAGGAAAGTACAA+TGG - chr4_2:11195712-11195731 Msa0588730:CDS 30.0%
ATTTCTTCCTGAGATAGTAA+TGG + chr4_2:11195743-11195762 None:intergenic 30.0%
CATGCCAATAGAATCTAAAG+TGG + chr4_2:11190422-11190441 None:intergenic 35.0%
ACCTCAATTGAGCTCAAAAT+TGG - chr4_2:11190554-11190573 Msa0588730:CDS 35.0%
! ACCAATTTTGAGCTCAATTG+AGG + chr4_2:11190558-11190577 None:intergenic 35.0%
CAATTGAGCTCAAAATTGGT+TGG - chr4_2:11190558-11190577 Msa0588730:CDS 35.0%
! TGGAAGCACAATTACTATCT+TGG - chr4_2:11190671-11190690 Msa0588730:CDS 35.0%
! GGAAGCACAATTACTATCTT+GGG - chr4_2:11190672-11190691 Msa0588730:CDS 35.0%
ATGATGTTCATCTTTGCTTG+TGG - chr4_2:11190964-11190983 Msa0588730:intron 35.0%
TGATGTTCATCTTTGCTTGT+GGG - chr4_2:11190965-11190984 Msa0588730:intron 35.0%
AGAAATGACCTGTATTACAG+GGG + chr4_2:11191291-11191310 None:intergenic 35.0%
CAGAAATGACCTGTATTACA+GGG + chr4_2:11191292-11191311 None:intergenic 35.0%
! GTTTTACCCCCTTGTAATAT+AGG + chr4_2:11191530-11191549 None:intergenic 35.0%
GTTAATCTTTCACAGCTCTT+CGG + chr4_2:11191658-11191677 None:intergenic 35.0%
AAGAGCTGTGAAAGATTAAC+CGG - chr4_2:11191658-11191677 Msa0588730:intron 35.0%
!!! TTGAGTTGAGTTTTGGTTCA+AGG + chr4_2:11191897-11191916 None:intergenic 35.0%
ATCTTCCTCGATTAAAGAAC+CGG - chr4_2:11191989-11192008 Msa0588730:intron 35.0%
CTACAATTAATCGGGTTTAC+GGG + chr4_2:11192155-11192174 None:intergenic 35.0%
CCTACAATTAATCGGGTTTA+CGG + chr4_2:11192156-11192175 None:intergenic 35.0%
CGTAAACCCGATTAATTGTA+GGG - chr4_2:11192154-11192173 Msa0588730:intron 35.0%
GTAAACCCGATTAATTGTAG+GGG - chr4_2:11192155-11192174 Msa0588730:intron 35.0%
!!! TTTTTATAGGGCTTTAAGCC+CGG - chr4_2:11192204-11192223 Msa0588730:intron 35.0%
!!! AAACAGGTACCTGGTTTTTT+AGG + chr4_2:11192231-11192250 None:intergenic 35.0%
TAAAAAACCAGGTACCTGTT+TGG - chr4_2:11192230-11192249 Msa0588730:intron 35.0%
AAAAAACCAGGTACCTGTTT+GGG - chr4_2:11192231-11192250 Msa0588730:intron 35.0%
! AATTGTTTTCCTCACCGTTT+TGG - chr4_2:11192491-11192510 Msa0588730:intron 35.0%
ACAAATGTCGCAAACCAAAA+CGG + chr4_2:11192508-11192527 None:intergenic 35.0%
CTCTTATAAATAAGACCGGA+TGG + chr4_2:11192648-11192667 None:intergenic 35.0%
! CTCTCATAAATAGTACCGAA+AGG - chr4_2:11192745-11192764 Msa0588730:intron 35.0%
! TACAATTTGGTGAAGGATGA+AGG + chr4_2:11192962-11192981 None:intergenic 35.0%
! TATTTTCTCTCTCTCTCTCT+AGG - chr4_2:11193018-11193037 Msa0588730:intron 35.0%
! ATTTTCTCTCTCTCTCTCTA+GGG - chr4_2:11193019-11193038 Msa0588730:intron 35.0%
AGTGAATGAAAACACTTGCT+AGG - chr4_2:11193097-11193116 Msa0588730:intron 35.0%
! GTGAATGAAAACACTTGCTA+GGG - chr4_2:11193098-11193117 Msa0588730:intron 35.0%
! TGAATGAAAACACTTGCTAG+GGG - chr4_2:11193099-11193118 Msa0588730:intron 35.0%
!!! TCCTTTTGGTTTCTTCTGTT+TGG + chr4_2:11193256-11193275 None:intergenic 35.0%
ACCAAAAGGAGATTGAACAA+TGG - chr4_2:11193266-11193285 Msa0588730:intron 35.0%
! TCCATTGTTCAATCTCCTTT+TGG + chr4_2:11193270-11193289 None:intergenic 35.0%
TTGAGTGTTCTTCTCTTTGT+TGG + chr4_2:11193362-11193381 None:intergenic 35.0%
! CCTCATAGTGGTGTTAAAAA+TGG + chr4_2:11193603-11193622 None:intergenic 35.0%
!! CCATTTTTAACACCACTATG+AGG - chr4_2:11193600-11193619 Msa0588730:intron 35.0%
GGGTAAACCATTATTGCTAA+AGG - chr4_2:11193632-11193651 Msa0588730:intron 35.0%
! CAAAGTGCCTTTAGCAATAA+TGG + chr4_2:11193642-11193661 None:intergenic 35.0%
!! AATGTTAACTTGTGCCTTCA+AGG - chr4_2:11193757-11193776 Msa0588730:intron 35.0%
!! ATGTTAACTTGTGCCTTCAA+GGG - chr4_2:11193758-11193777 Msa0588730:intron 35.0%
AAAATGAGTCATCTATCGTC+TGG - chr4_2:11194194-11194213 Msa0588730:intron 35.0%
GTGCCATGACTAAAATAAAG+AGG - chr4_2:11194251-11194270 Msa0588730:intron 35.0%
!!! CCTCCTCTTTATTTTAGTCA+TGG + chr4_2:11194257-11194276 None:intergenic 35.0%
CCATGACTAAAATAAAGAGG+AGG - chr4_2:11194254-11194273 Msa0588730:intron 35.0%
TGACTAAAATAAAGAGGAGG+AGG - chr4_2:11194257-11194276 Msa0588730:intron 35.0%
AAAAAGCTCGGTTGAAATAC+TGG - chr4_2:11194353-11194372 Msa0588730:intron 35.0%
CAACTAGTCATAGTGACATT+AGG - chr4_2:11194582-11194601 Msa0588730:intron 35.0%
! TAGGCCGAATTTCTTTAGAA+TGG - chr4_2:11195100-11195119 Msa0588730:intron 35.0%
!! AGGCCGAATTTCTTTAGAAT+GGG - chr4_2:11195101-11195120 Msa0588730:intron 35.0%
AAATTGAGTGATCGTAGTTG+TGG + chr4_2:11195253-11195272 None:intergenic 35.0%
!! TCTCTTGTTTCCACTTTTGT+TGG - chr4_2:11195288-11195307 Msa0588730:intron 35.0%
AGGAGTAACAAGAGATGAAA+AGG + chr4_2:11195375-11195394 None:intergenic 35.0%
!! GACAAAATGCTAGCCATTTT+AGG - chr4_2:11195464-11195483 Msa0588730:CDS 35.0%
!!! CTAGCCATTTTAGGTTTTAC+TGG - chr4_2:11195473-11195492 Msa0588730:CDS 35.0%
CTTGCCAGTAAAACCTAAAA+TGG + chr4_2:11195480-11195499 None:intergenic 35.0%
!!! ACACTAGTTTTGTTGTACTC+CGG + chr4_2:11195553-11195572 None:intergenic 35.0%
CAAAACTAGTGTCTTTGGTT+TGG - chr4_2:11195561-11195580 Msa0588730:CDS 35.0%
ATAGACAACCCTTTAACCTT+GGG - chr4_2:11195592-11195611 Msa0588730:CDS 35.0%
TAAGCTCAAAATTGGTTGGA+AGG - chr4_2:11195623-11195642 Msa0588730:CDS 35.0%
AAGCTCAAAATTGGTTGGAA+GGG - chr4_2:11195624-11195643 Msa0588730:CDS 35.0%
!!! TGGAGTTTTTAGGTTTGCTA+AGG - chr4_2:11195807-11195826 Msa0588730:CDS 35.0%
!!! GGAGTTTTTAGGTTTGCTAA+GGG - chr4_2:11195808-11195827 Msa0588730:CDS 35.0%
! TTGTGAGGGTGTAACAAGAA+AGG + chr4_2:11190323-11190342 None:intergenic 40.0%
ATCTATTGATCCCACGAAAC+CGG + chr4_2:11190367-11190386 None:intergenic 40.0%
AGGTGGAATAATTTCGATCG+CGG + chr4_2:11190469-11190488 None:intergenic 40.0%
GTTGTGTTAAACTTCGGAAG+AGG + chr4_2:11190489-11190508 None:intergenic 40.0%
TAACACAACAAACTTCGGTG+AGG - chr4_2:11190500-11190519 Msa0588730:CDS 40.0%
CATAGACAACGCTTTAACCT+CGG - chr4_2:11190530-11190549 Msa0588730:CDS 40.0%
ATAGACAACGCTTTAACCTC+GGG - chr4_2:11190531-11190550 Msa0588730:CDS 40.0%
TGAGCTCAAAATTGGTTGGA+AGG - chr4_2:11190562-11190581 Msa0588730:CDS 40.0%
GAGCTCAAAATTGGTTGGAA+GGG - chr4_2:11190563-11190582 Msa0588730:CDS 40.0%
AAGCTCAGTTTGTGAGGTAT+AGG + chr4_2:11190604-11190623 None:intergenic 40.0%
GTTAGAGAAATGCCTGTGAT+TGG - chr4_2:11190717-11190736 Msa0588730:CDS 40.0%
GATGTTCATCTTTGCTTGTG+GGG - chr4_2:11190966-11190985 Msa0588730:intron 40.0%
ATGTTCATCTTTGCTTGTGG+GGG - chr4_2:11190967-11190986 Msa0588730:intron 40.0%
! TGTTTTACCCCCTGTAATAC+AGG - chr4_2:11191280-11191299 Msa0588730:intron 40.0%
GAAATGACCTGTATTACAGG+GGG + chr4_2:11191290-11191309 None:intergenic 40.0%
CCAGAAATGACCTGTATTAC+AGG + chr4_2:11191293-11191312 None:intergenic 40.0%
CCTGTAATACAGGTCATTTC+TGG - chr4_2:11191290-11191309 Msa0588730:intron 40.0%
! TCACACTCTGAAAGTGAGAA+GGG + chr4_2:11191601-11191620 None:intergenic 40.0%
! TTCACACTCTGAAAGTGAGA+AGG + chr4_2:11191602-11191621 None:intergenic 40.0%
GAAAGATTAACCGGTCACTT+TGG - chr4_2:11191667-11191686 Msa0588730:intron 40.0%
TCTGCACTTCGCTGTTATAA+AGG - chr4_2:11191698-11191717 Msa0588730:intron 40.0%
GTTTACGGGAAAGCCTATAT+GGG + chr4_2:11192141-11192160 None:intergenic 40.0%
CCGTAAACCCGATTAATTGT+AGG - chr4_2:11192153-11192172 Msa0588730:intron 40.0%
AAAAACCAGGTACCTGTTTG+GGG - chr4_2:11192232-11192251 Msa0588730:intron 40.0%
AGAGAATGAGGGAAATGAGA+GGG + chr4_2:11192939-11192958 None:intergenic 40.0%
AAGGATGAAGGAGAGAATGA+GGG + chr4_2:11192950-11192969 None:intergenic 40.0%
GCCAAACAGAAGAAACCAAA+AGG - chr4_2:11193252-11193271 Msa0588730:intron 40.0%
GAATCTCAATGATCTCCTCA+CGG + chr4_2:11193574-11193593 None:intergenic 40.0%
ACCACTATGAGGTTTGCAAA+AGG - chr4_2:11193611-11193630 Msa0588730:intron 40.0%
CCACTATGAGGTTTGCAAAA+GGG - chr4_2:11193612-11193631 Msa0588730:intron 40.0%
! ACTCGGTCATACCTATTTCT+AGG - chr4_2:11193732-11193751 Msa0588730:intron 40.0%
! TGTCATAAGGGCACATGTTA+AGG + chr4_2:11193893-11193912 None:intergenic 40.0%
TTCCAAAGAATGTGAGACGA+TGG - chr4_2:11193989-11194008 Msa0588730:intron 40.0%
TTCCATCGTCTCACATTCTT+TGG + chr4_2:11193994-11194013 None:intergenic 40.0%
! TGTCATAAGGGCACATGTTA+AGG + chr4_2:11193893-11193912 None:intergenic 40.0%
TTCCAAAGAATGTGAGACGA+TGG - chr4_2:11193989-11194008 Msa0588730:intron 40.0%
TTCCATCGTCTCACATTCTT+TGG + chr4_2:11193994-11194013 None:intergenic 40.0%
GACGATGGAAAGCTAGATAA+TGG - chr4_2:11194159-11194178 Msa0588730:intron 40.0%
TGGTTGCATGTTAAAGAGGA+AGG - chr4_2:11194214-11194233 Msa0588730:intron 40.0%
AGCTGTCAAAACAGGTTATC+CGG - chr4_2:11194281-11194300 Msa0588730:intron 40.0%
GATAAAGTCCAAAGCCCTTT+AGG + chr4_2:11194323-11194342 None:intergenic 40.0%
!! AAAGGGCTTTGGACTTTATC+AGG - chr4_2:11194323-11194342 Msa0588730:intron 40.0%
! GCTTTGGACTTTATCAGGTT+AGG - chr4_2:11194328-11194347 Msa0588730:intron 40.0%
TCAGGTTAGGCTAAAAAGCT+CGG - chr4_2:11194341-11194360 Msa0588730:intron 40.0%
!! CTCTTGAAATTTCTAGCCAC+AGG - chr4_2:11194640-11194659 Msa0588730:intron 40.0%
TTGAAATCTCACAACACCGA+GGG + chr4_2:11194768-11194787 None:intergenic 40.0%
ATTGAAATCTCACAACACCG+AGG + chr4_2:11194769-11194788 None:intergenic 40.0%
!! GGCCGAATTTCTTTAGAATG+GGG - chr4_2:11195102-11195121 Msa0588730:intron 40.0%
AAGGAATATTCAAGGCTGCA+TGG - chr4_2:11195194-11195213 Msa0588730:intron 40.0%
ATCTATTGAGCTCACGAAAC+CGG + chr4_2:11195425-11195444 None:intergenic 40.0%
! GTTTTACTGGCAAGACATAG+TGG - chr4_2:11195486-11195505 Msa0588730:CDS 40.0%
CGATATCATTTCATCACTCC+CGG - chr4_2:11195531-11195550 Msa0588730:CDS 40.0%
!!! CACTAGTTTTGTTGTACTCC+GGG + chr4_2:11195552-11195571 None:intergenic 40.0%
CATAGACAACCCTTTAACCT+TGG - chr4_2:11195591-11195610 Msa0588730:CDS 40.0%
ATTGAGGTCCCAAGGTTAAA+GGG + chr4_2:11195603-11195622 None:intergenic 40.0%
AATTGAGGTCCCAAGGTTAA+AGG + chr4_2:11195604-11195623 None:intergenic 40.0%
GTTAGAGAAATGCCTGTGAT+TGG - chr4_2:11190717-11190736 Msa0588730:CDS 40.0%
! TTGGTGGAAGTGGAGTTTTT+AGG - chr4_2:11195797-11195816 Msa0588730:CDS 40.0%
TACTCTTCTAATCCCAACAC+AGG - chr4_2:11195850-11195869 Msa0588730:CDS 40.0%
ATTGTAGCATCTCCTGTGTT+GGG + chr4_2:11195865-11195884 None:intergenic 40.0%
AATTGTAGCATCTCCTGTGT+TGG + chr4_2:11195866-11195885 None:intergenic 40.0%
GGGTGTAACAAGAAAGGAGA+AGG + chr4_2:11190317-11190336 None:intergenic 45.0%
TTGTGCAGTGACGATTGTGA+GGG + chr4_2:11190337-11190356 None:intergenic 45.0%
TATTGGCATGACGTAGTCAG+CGG - chr4_2:11190432-11190451 Msa0588730:CDS 45.0%
TGGAATAATTTCGATCGCGG+TGG + chr4_2:11190466-11190485 None:intergenic 45.0%
GTGTTAAACTTCGGAAGAGG+TGG + chr4_2:11190486-11190505 None:intergenic 45.0%
AAATTGGTTGGAAGGGCTCA+AGG - chr4_2:11190570-11190589 Msa0588730:CDS 45.0%
AATTGGTTGGAAGGGCTCAA+GGG - chr4_2:11190571-11190590 Msa0588730:CDS 45.0%
AGAGAAATGCCTGTGATTGG+TGG - chr4_2:11190720-11190739 Msa0588730:CDS 45.0%
AGTTGTAGCATCTCCTGTAG+TGG + chr4_2:11190805-11190824 None:intergenic 45.0%
AGTGAGTGATGCTCCATGAT+AGG + chr4_2:11190940-11190959 None:intergenic 45.0%
! AAGGAGTATGAGGTGTCACA+TGG - chr4_2:11191838-11191857 Msa0588730:intron 45.0%
ACGAAGAGCAACACTTCGTT+GGG + chr4_2:11191956-11191975 None:intergenic 45.0%
!! GACTACCGGTTCTTTAATCG+AGG + chr4_2:11191997-11192016 None:intergenic 45.0%
!! CAAAACGGGCTAACCCATAT+AGG - chr4_2:11192125-11192144 Msa0588730:intron 45.0%
GGTTTACGGGAAAGCCTATA+TGG + chr4_2:11192142-11192161 None:intergenic 45.0%
CCAAGCCCCTACAATTAATC+GGG + chr4_2:11192163-11192182 None:intergenic 45.0%
CCCAAGCCCCTACAATTAAT+CGG + chr4_2:11192164-11192183 None:intergenic 45.0%
CCGATTAATTGTAGGGGCTT+GGG - chr4_2:11192161-11192180 Msa0588730:intron 45.0%
GGGCTTGGGCCTTAAATAAT+GGG - chr4_2:11192175-11192194 Msa0588730:intron 45.0%
!!! GTACCTGGTTTTTTAGGACC+GGG + chr4_2:11192225-11192244 None:intergenic 45.0%
!!! GGTACCTGGTTTTTTAGGAC+CGG + chr4_2:11192226-11192245 None:intergenic 45.0%
GAGAGAATGAGGGAAATGAG+AGG + chr4_2:11192940-11192959 None:intergenic 45.0%
GAAGGATGAAGGAGAGAATG+AGG + chr4_2:11192951-11192970 None:intergenic 45.0%
! CCCTTTTGCAAACCTCATAG+TGG + chr4_2:11193615-11193634 None:intergenic 45.0%
TCCTTAACATGTGCCCTTGA+AGG + chr4_2:11193774-11193793 None:intergenic 45.0%
CGTCTGGTTGCATGTTAAAG+AGG - chr4_2:11194210-11194229 Msa0588730:intron 45.0%
!! CTTTAGGATCCACCCTAAAC+GGG + chr4_2:11194307-11194326 None:intergenic 45.0%
!! CCTTTAGGATCCACCCTAAA+CGG + chr4_2:11194308-11194327 None:intergenic 45.0%
! CGTTTAGGGTGGATCCTAAA+GGG - chr4_2:11194306-11194325 Msa0588730:intron 45.0%
! TACACGAGCCGTGGATTAAA+CGG - chr4_2:11194403-11194422 Msa0588730:intron 45.0%
!! GATGACTTGTTCTAGTCCTG+TGG + chr4_2:11194659-11194678 None:intergenic 45.0%
TGAAATCTCACAACACCGAG+GGG + chr4_2:11194767-11194786 None:intergenic 45.0%
! GAAACCGGTCTCATTTTGTG+CGG + chr4_2:11195410-11195429 None:intergenic 45.0%
CGTGAGCTCAATAGATCCTA+CGG - chr4_2:11195429-11195448 Msa0588730:intron 45.0%
! GATCCTACGGTTTTCCAAAG+AGG - chr4_2:11195442-11195461 Msa0588730:intron 45.0%
! TGTCCTCTTTGGAAAACCGT+AGG + chr4_2:11195448-11195467 None:intergenic 45.0%
! GGCTAGCATTTTGTCCTCTT+TGG + chr4_2:11195459-11195478 None:intergenic 45.0%
TGAGCTTAATTGAGGTCCCA+AGG + chr4_2:11195611-11195630 None:intergenic 45.0%
AAATTGGTTGGAAGGGCTCA+AGG - chr4_2:11190570-11190589 Msa0588730:CDS 45.0%
!! GGAAGCACCATTACTATCTC+AGG - chr4_2:11195733-11195752 Msa0588730:CDS 45.0%
AGAGAAATGCCTGTGATTGG+TGG - chr4_2:11190720-11190739 Msa0588730:CDS 45.0%
!!! NNNNNTTTTTATTCAAATAA+TGG + chr4_2:11191044-11191063 None:intergenic 5.0%
!! AAGAAAAAAAAATAAAAAAT+TGG + chr4_2:11191405-11191424 None:intergenic 5.0%
!!! TTTTAATCTATTTTTTATTA+AGG + chr4_2:11195022-11195041 None:intergenic 5.0%
CTTGTGCAGTGACGATTGTG+AGG + chr4_2:11190338-11190357 None:intergenic 50.0%
GTCACTGCACAAGATGAGAC+CGG - chr4_2:11190345-11190364 Msa0588730:CDS 50.0%
! ACAAGATGAGACCGGTTTCG+TGG - chr4_2:11190353-11190372 Msa0588730:CDS 50.0%
! CAAGATGAGACCGGTTTCGT+GGG - chr4_2:11190354-11190373 Msa0588730:CDS 50.0%
ATGCCTGTGATTGGTGGAAG+TGG - chr4_2:11190726-11190745 Msa0588730:CDS 50.0%
AGTCCACTTCCACCAATCAC+AGG + chr4_2:11190732-11190751 None:intergenic 50.0%
AACAGCGAAGTGCAGAGTCA+GGG + chr4_2:11191694-11191713 None:intergenic 50.0%
TAACAGCGAAGTGCAGAGTC+AGG + chr4_2:11191695-11191714 None:intergenic 50.0%
ACTTCGTTGGGACGAGTTTG+TGG + chr4_2:11191944-11191963 None:intergenic 50.0%
GACGAAGAGCAACACTTCGT+TGG + chr4_2:11191957-11191976 None:intergenic 50.0%
CTCCCCTAGAGCTGTCAAAA+CGG - chr4_2:11192110-11192129 Msa0588730:intron 50.0%
TCCCCTAGAGCTGTCAAAAC+GGG - chr4_2:11192111-11192130 Msa0588730:intron 50.0%
!! AGCCCGTTTTGACAGCTCTA+GGG + chr4_2:11192116-11192135 None:intergenic 50.0%
!! TAGCCCGTTTTGACAGCTCT+AGG + chr4_2:11192117-11192136 None:intergenic 50.0%
CCCGATTAATTGTAGGGGCT+TGG - chr4_2:11192160-11192179 Msa0588730:intron 50.0%
GGGGCTTGGGCCTTAAATAA+TGG - chr4_2:11192174-11192193 Msa0588730:intron 50.0%
AAGCCCGGTCCTAAAAAACC+AGG - chr4_2:11192219-11192238 Msa0588730:intron 50.0%
TGTCGCAAACCAAAACGGTG+AGG + chr4_2:11192503-11192522 None:intergenic 50.0%
TCTAAACCTCTGTGACCGTG+AGG - chr4_2:11193556-11193575 Msa0588730:intron 50.0%
! GCCTTCAAGGGCACATGTTA+AGG - chr4_2:11193770-11193789 Msa0588730:intron 50.0%
GAGGAGGTAGCTGTCAAAAC+AGG - chr4_2:11194273-11194292 Msa0588730:intron 50.0%
! CCGTTTAGGGTGGATCCTAA+AGG - chr4_2:11194305-11194324 Msa0588730:intron 50.0%
GTTTAATCCACGGCTCGTGT+AGG + chr4_2:11194404-11194423 None:intergenic 50.0%
! ACACGAGCCGTGGATTAAAC+GGG - chr4_2:11194404-11194423 Msa0588730:intron 50.0%
! GGTCTCATTTTGTGCGGTGA+CGG + chr4_2:11195404-11195423 None:intergenic 50.0%
GTCACCGCACAAAATGAGAC+CGG - chr4_2:11195403-11195422 Msa0588730:intron 50.0%
TACTGGCAAGACATAGTGGC+CGG - chr4_2:11195490-11195509 Msa0588730:CDS 50.0%
GAATGAGGTTGCGTTGTCTC+CGG + chr4_2:11195512-11195531 None:intergenic 50.0%
! GAGCTCGGTTTGTGAAGTAG+AGG + chr4_2:11195665-11195684 None:intergenic 50.0%
ATGCCTGTGATTGGTGGAAG+TGG - chr4_2:11190726-11190745 Msa0588730:CDS 50.0%
ACTCCACTTCCACCAATCAC+AGG + chr4_2:11195793-11195812 None:intergenic 50.0%
TGAGCTCAATTGAGGTCCCG+AGG + chr4_2:11190550-11190569 None:intergenic 55.0%
GAGTCAGGGACCAAAGTGAC+CGG + chr4_2:11191680-11191699 None:intergenic 55.0%
!! TTTGACAGCTCTAGGGGAGG+AGG + chr4_2:11192109-11192128 None:intergenic 55.0%
!!! CGTTTTGACAGCTCTAGGGG+AGG + chr4_2:11192112-11192131 None:intergenic 55.0%
!! GCCCGTTTTGACAGCTCTAG+GGG + chr4_2:11192115-11192134 None:intergenic 55.0%
AGCTACCCCAAACAGGTACC+TGG + chr4_2:11192240-11192259 None:intergenic 55.0%
TGATCTCCTCACGGTCACAG+AGG + chr4_2:11193565-11193584 None:intergenic 55.0%
ACAGGTTATCCGGCCCGTTT+AGG - chr4_2:11194291-11194310 Msa0588730:intron 55.0%
CAGGTTATCCGGCCCGTTTA+GGG - chr4_2:11194292-11194311 Msa0588730:intron 55.0%
GGGTGGATCCTAAAGGGCTT+TGG - chr4_2:11194312-11194331 Msa0588730:intron 55.0%
! GAGCCGTGGATTAAACGGGT+CGG - chr4_2:11194408-11194427 Msa0588730:intron 55.0%
GGACCGACCCGTTTAATCCA+CGG + chr4_2:11194414-11194433 None:intergenic 55.0%
! TTGTGCGGTGACGGTTGTGT+AGG + chr4_2:11195395-11195414 None:intergenic 55.0%
! CCTGTTTGGGGTAGCTCGCA+CGG - chr4_2:11192244-11192263 Msa0588730:intron 60.0%
! CTGTTTGGGGTAGCTCGCAC+GGG - chr4_2:11192245-11192264 Msa0588730:intron 60.0%
GTTATCCGGCCCGTTTAGGG+TGG - chr4_2:11194295-11194314 Msa0588730:intron 60.0%
AGGATCCACCCTAAACGGGC+CGG + chr4_2:11194303-11194322 None:intergenic 60.0%
AATCCACGGCTCGTGTAGGC+CGG + chr4_2:11194400-11194419 None:intergenic 60.0%
CCGTGCGAGCTACCCCAAAC+AGG + chr4_2:11192247-11192266 None:intergenic 65.0%
GGGGTAGCTCGCACGGGTCA+CGG - chr4_2:11192251-11192270 Msa0588730:intron 70.0%
GGGTAGCTCGCACGGGTCAC+GGG - chr4_2:11192252-11192271 Msa0588730:intron 70.0%
AGTCCGGCCTACACGAGCCG+TGG - chr4_2:11194394-11194413 Msa0588730:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11190282 11195918 11190282 ID=Msa0588730;Name=Msa0588730
chr4_2 mRNA 11190282 11195918 11190282 ID=Msa0588730-mRNA-1;Parent=Msa0588730;Name=Msa0588730-mRNA-1;_AED=0.10;_eAED=0.17;_QI=0|0|0|1|0|0|4|0|307
chr4_2 exon 11195757 11195918 11195757 ID=Msa0588730-mRNA-1:exon:3273;Parent=Msa0588730-mRNA-1
chr4_2 exon 11195684 11195752 11195684 ID=Msa0588730-mRNA-1:exon:3272;Parent=Msa0588730-mRNA-1
chr4_2 exon 11195462 11195678 11195462 ID=Msa0588730-mRNA-1:exon:3271;Parent=Msa0588730-mRNA-1
chr4_2 exon 11190282 11190757 11190282 ID=Msa0588730-mRNA-1:exon:3270;Parent=Msa0588730-mRNA-1
chr4_2 CDS 11195757 11195918 11195757 ID=Msa0588730-mRNA-1:cds;Parent=Msa0588730-mRNA-1
chr4_2 CDS 11195684 11195752 11195684 ID=Msa0588730-mRNA-1:cds;Parent=Msa0588730-mRNA-1
chr4_2 CDS 11195462 11195678 11195462 ID=Msa0588730-mRNA-1:cds;Parent=Msa0588730-mRNA-1
chr4_2 CDS 11190282 11190757 11190282 ID=Msa0588730-mRNA-1:cds;Parent=Msa0588730-mRNA-1
Gene Sequence

>Msa0588730

ATGGCTATAGGTGCTTTCAAAATCTTCTTCTTCCTTCTCCTTTCTTGTTACACCCTCACAATCGTCACTGCACAAGATGAGACCGGTTTCGTGGGATCAATAGATCCTAAATTGTTCAGAAGAAGACAAAATGTTAGCCACTTTAGATTCTATTGGCATGACTCAGCGGAGACAACGCCACCGCGATCGAAATTATTCCACCTCTTCCGAAGTTTAACACAACAAACTTCGGTGAAAGTCATAGACAACGCTTTAACCTCGGGACCTCAATTGAGCTCAAAATTGGTTGGAAGGGCTCAAGGGATATATTCCTATACCTCACAAACTGAGCTTAATTTTCTTATGATAATGAATTTTGCATTATTTGAAGGGAAATATAATGGAAGCACAATTACTATCTTGGGAAGAAATGATGCTTATGAAAAGGTTAGAGAAATGCCTGTGATTGATCCTACGGTTTTCCAAAGAGGACAAAATGCTAGCCATTTTAGGTTTTACTGGCAAGACATAGTGGCCGGAGACAACGCAACCTCATTCGATATCATTTCATCACTCCCGGAGTACAACAAAACTAGTGTCTTTGGTTTGGTGAAAATCATAGACAACCCTTTAACCTTGGGACCTCAATTAAGCTCAAAATTGGTTGGAAGGGCTCAAGGAATATATGCCTCTACTTCACAAACCGAGCTCAATTTTCTTATGATTATGAACTTTGCTTTGTTTGAAGGAAAGTACAATGGAAGCACCATTACTATCTCAGGAAGAAATGTTGCTAACAATAAGGTTAGAGAAATGCCTGTGATTGGTGGAAGTGGAGTTTTTAGGTTTGCTAAGGGATATGCTGAAGCTAGTACTTACTCTTCTAATCCCAACACAGGAGATGCTACAATTGAGTATAATGTTTATGTTTCTCATTATATTTAA

Protein sequence

>Msa0588730

MAIGAFKIFFFLLLSCYTLTIVTAQDETGFVGSIDPKLFRRRQNVSHFRFYWHDSAETTPPRSKLFHLFRSLTQQTSVKVIDNALTSGPQLSSKLVGRAQGIYSYTSQTELNFLMIMNFALFEGKYNGSTITILGRNDAYEKVREMPVIDPTVFQRGQNASHFRFYWQDIVAGDNATSFDIISSLPEYNKTSVFGLVKIIDNPLTLGPQLSSKLVGRAQGIYASTSQTELNFLMIMNFALFEGKYNGSTITISGRNVANNKVREMPVIGGSGVFRFAKGYAEASTYSSNPNTGDATIEYNVYVSHYI*