AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307950 MtrunA17_Chr1g0176801 92.193 269 21 0 1 269 1 269 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307950 AT5G06410.1 57.277 213 84 2 57 269 47 252 2.20e-86 259

Find 81 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAGGATTCATGAAATT+TGG 0.145260 2_4:+1152386 None:intergenic
CATTGTTGAATATGTAATTA+AGG 0.224741 2_4:+1152371 None:intergenic
GTTACCTCTGCTAATAATTC+TGG 0.226330 2_4:+1150522 None:intergenic
ATTAAGGATTCATGAAATTT+GGG 0.280069 2_4:+1152387 None:intergenic
AATTACGATTATTCTTCATT+TGG 0.301008 2_4:-1152195 Msa0307950:CDS
TGACGTAGAGGGTATTGATT+TGG 0.315123 2_4:-1151170 Msa0307950:CDS
TCCTGCAGATTATGGAAATC+AGG 0.317640 2_4:-1149778 Msa0307950:intron
CTTCTTCAAAGTCCCGCTTT+TGG 0.322648 2_4:+1149523 None:intergenic
TTTGCAATTTATCTACATTC+AGG 0.324373 2_4:+1152475 None:intergenic
ATTTGTTAGTTGAAGCTTGA+TGG 0.324638 2_4:-1150579 Msa0307950:intron
ATTACGATTATTCTTCATTT+GGG 0.344545 2_4:-1152194 Msa0307950:CDS
GAAGAAGGTTGAAAGAGGTT+TGG 0.374076 2_4:+1152332 None:intergenic
TCCAAGATGGAGCTATTCCT+TGG 0.375588 2_4:-1148848 Msa0307950:CDS
AAAGAAACTACATCCTGATT+TGG 0.379604 2_4:-1151125 Msa0307950:CDS
ATCAATGGTTATTTACTCAT+AGG 0.383801 2_4:+1148755 None:intergenic
ACACTCAAAACATTCATATC+TGG 0.387191 2_4:-1148494 Msa0307950:three_prime_UTR
GATTACATCATTTGTATCAA+TGG 0.388354 2_4:-1148735 Msa0307950:three_prime_UTR
CCAAGATGGAGCTATTCCTT+GGG 0.394723 2_4:-1148847 Msa0307950:CDS
TATAGATTATGAATATTATA+CGG 0.402465 2_4:+1152222 None:intergenic
CGCTGATGCTTTCCAAAAGC+GGG 0.419435 2_4:-1149535 Msa0307950:CDS
TAGTCATTTGAATGATCAAC+AGG 0.423045 2_4:+1152042 None:intergenic
ACGTGCATAGCAAAGCAATA+AGG 0.440004 2_4:+1148711 None:intergenic
ATGAATATTATACGGTGTAA+AGG 0.443593 2_4:+1152230 None:intergenic
TTTGGTGCATTCAAAATCTC+AGG 0.443830 2_4:-1151107 Msa0307950:intron
TGAATATTATACGGTGTAAA+GGG 0.444296 2_4:+1152231 None:intergenic
GGAGATTGAGGTTTAAGATA+AGG 0.453740 2_4:+1152261 None:intergenic
CTATTCCTTGGGGCGGCAAA+TGG 0.458555 2_4:-1148836 Msa0307950:CDS
TGATTTGGAGGGGAAGTACA+AGG 0.458896 2_4:-1151155 Msa0307950:CDS
TTTATGACAAAATTTAGATT+CGG 0.464618 2_4:+1152427 None:intergenic
TGCAGGAGAAAATGCAAAGT+TGG 0.478471 2_4:-1149569 Msa0307950:CDS
TGTTCGTATAAAGTTGAAGA+AGG 0.490091 2_4:+1152317 None:intergenic
ACGTTGAGGAATCGAAGTTA+AGG 0.491039 2_4:+1152290 None:intergenic
CCCAAGGAATAGCTCCATCT+TGG 0.492080 2_4:+1148847 None:intergenic
CGTAGAGGGTATTGATTTGG+AGG 0.493506 2_4:-1151167 Msa0307950:CDS
TTATTATACTCGTGTAATTG+AGG 0.500529 2_4:-1149475 Msa0307950:CDS
GATACAAATGATGTAATCAA+TGG 0.501711 2_4:+1148740 None:intergenic
TTGCTTTGCTATGCACGTAT+CGG 0.503707 2_4:-1148706 Msa0307950:three_prime_UTR
TACGGTGTAAAGGGTGGTGA+TGG 0.506836 2_4:+1152240 None:intergenic
GTGGGTTGGAAATTCTCAGC+AGG 0.509629 2_4:+1152135 None:intergenic
AGAATTTCCAACCCACATGC+TGG 0.512534 2_4:-1152128 Msa0307950:CDS
CTTGAATGAGTGTTCATGCT+AGG 0.517779 2_4:+1148643 None:intergenic
AAGTTGAAGAAGGTTGAAAG+AGG 0.529141 2_4:+1152327 None:intergenic
CCTGCAGATTATGGAAATCA+GGG 0.533197 2_4:-1149777 Msa0307950:intron
AGAGTTAGTTGCTTCTTCAA+CGG 0.538397 2_4:+1149751 None:intergenic
AAGGGTGGTGATGGAGATTG+AGG 0.538552 2_4:+1152249 None:intergenic
AAGAGGAAAGGTGCTGATTG+AGG 0.540087 2_4:+1152090 None:intergenic
GACAATTCCAGCATGTGGGT+TGG 0.549693 2_4:+1152121 None:intergenic
CATGCTAGGGATGTGGCTCA+TGG 0.552197 2_4:+1148657 None:intergenic
AGCATGACAATTCCAGCATG+TGG 0.570875 2_4:+1152116 None:intergenic
ATTTGCTGATTGCAATGAAG+TGG 0.572176 2_4:-1148778 Msa0307950:CDS
AGGATTCATGAAATTTGGGA+GGG 0.576368 2_4:+1152391 None:intergenic
TTTGTCAAGAGCGATTTACA+TGG 0.578860 2_4:-1150853 Msa0307950:intron
ATCTACCATTTGCCGCCCCA+AGG 0.580412 2_4:+1148831 None:intergenic
AAGGATTCATGAAATTTGGG+AGG 0.582665 2_4:+1152390 None:intergenic
AGCGACACGATTGACAGAAG+AGG 0.584298 2_4:+1152073 None:intergenic
TCGCTGATGCTTTCCAAAAG+CGG 0.587877 2_4:-1149536 Msa0307950:CDS
ATGTAAATCGCTCTTGACAA+AGG 0.590079 2_4:+1150855 None:intergenic
AGATCCAGAATTATTAGCAG+AGG 0.590429 2_4:-1150526 Msa0307950:intron
GTTGGTGTAGGCTTCCAAGA+TGG 0.591331 2_4:-1148861 Msa0307950:intron
TGTTGCTTTGTTGCATGCAG+CGG 0.593199 2_4:+1148619 None:intergenic
CAAGTGTTGCAAATTTACCT+AGG 0.597718 2_4:+1148552 None:intergenic
GAGTGTTCATGCTAGGGATG+TGG 0.599756 2_4:+1148650 None:intergenic
GGAGAGGAAGTATGACGTAG+AGG 0.600529 2_4:-1151182 Msa0307950:CDS
CACGATTGACAGAAGAGGAA+AGG 0.602503 2_4:+1152078 None:intergenic
GAGAGGAAGTATGACGTAGA+GGG 0.603503 2_4:-1151181 Msa0307950:CDS
GTAGAGGGTATTGATTTGGA+GGG 0.608421 2_4:-1151166 Msa0307950:CDS
TTAGTTGAAGCTTGATGGAG+TGG 0.608425 2_4:-1150574 Msa0307950:intron
GTTGCAAATTTACCTAGGCG+AGG 0.622783 2_4:+1148557 None:intergenic
TTTGAATCAGATTCGCTCTG+AGG 0.623474 2_4:-1149723 Msa0307950:intron
CAAGATGGAGCTATTCCTTG+GGG 0.624618 2_4:-1148846 Msa0307950:CDS
TAGAGGGTATTGATTTGGAG+GGG 0.625338 2_4:-1151165 Msa0307950:CDS
TTGAATGAGTGTTCATGCTA+GGG 0.625900 2_4:+1148644 None:intergenic
ATATTATACGGTGTAAAGGG+TGG 0.640063 2_4:+1152234 None:intergenic
AGATAAGGTGATACACGTTG+AGG 0.642015 2_4:+1152276 None:intergenic
GATGGAGCTATTCCTTGGGG+CGG 0.646333 2_4:-1148843 Msa0307950:CDS
GCATGACAATTCCAGCATGT+GGG 0.648381 2_4:+1152117 None:intergenic
TGGAGGGGAAGTACAAGGAG+TGG 0.648704 2_4:-1151150 Msa0307950:CDS
CGGTGACAGAGTCAAAGACA+TGG 0.652103 2_4:+1152447 None:intergenic
ATTCTTCATTTGGGTCTCTG+CGG 0.657385 2_4:-1152185 Msa0307950:CDS
TGATGGAGTGGAAGTTGATG+AGG 0.658748 2_4:-1150562 Msa0307950:CDS
TGAAGAAGCAACTAACTCTG+AGG 0.709047 2_4:-1149747 Msa0307950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGATTATGAATATTATA+CGG + chr2_4:1148731-1148750 None:intergenic 10.0%
!!! TTTTTCTTTTAAATTAAAAC+AGG - chr2_4:1149746-1149765 Msa0307950:CDS 10.0%
!!! TTTTCTTTTAAATTAAAACA+GGG - chr2_4:1149747-1149766 Msa0307950:CDS 10.0%
!! CAATAATAATACAAAAATAA+AGG + chr2_4:1152062-1152081 None:intergenic 10.0%
!! TTTATGACAAAATTTAGATT+CGG + chr2_4:1148526-1148545 None:intergenic 15.0%
!!! AACAAAGTTTTGATTTTTAT+TGG - chr2_4:1149011-1149030 Msa0307950:intron 15.0%
!! GAAGAAATTTAATCATTTAT+AGG - chr2_4:1149096-1149115 Msa0307950:intron 15.0%
!! TTAATCATTTATAGGAAATT+TGG - chr2_4:1149104-1149123 Msa0307950:intron 15.0%
!! GAAATAAAAAAAAAGAAGAA+AGG + chr2_4:1149889-1149908 None:intergenic 15.0%
!! TTTCTTTCTCTTAAATAAAT+TGG - chr2_4:1150989-1151008 Msa0307950:intron 15.0%
!!! GTAATGTAATAATTTTCTTT+TGG - chr2_4:1151523-1151542 Msa0307950:intron 15.0%
!! AATTTAGAAACAAATGATAA+TGG - chr2_4:1151644-1151663 Msa0307950:intron 15.0%
!! ATTTAGAAACAAATGATAAT+GGG - chr2_4:1151645-1151664 Msa0307950:intron 15.0%
!!! TATTATTATTGATGATATGT+TGG - chr2_4:1152071-1152090 Msa0307950:CDS 15.0%
!! ATTAAGGATTCATGAAATTT+GGG + chr2_4:1148566-1148585 None:intergenic 20.0%
!! AATTAAGGATTCATGAAATT+TGG + chr2_4:1148567-1148586 None:intergenic 20.0%
!! CATTGTTGAATATGTAATTA+AGG + chr2_4:1148582-1148601 None:intergenic 20.0%
!! AATTACGATTATTCTTCATT+TGG - chr2_4:1148755-1148774 Msa0307950:exon 20.0%
!! ATTACGATTATTCTTCATTT+GGG - chr2_4:1148756-1148775 Msa0307950:exon 20.0%
!!! TTTTATTGGTTGATGAATAA+TGG - chr2_4:1149025-1149044 Msa0307950:intron 20.0%
!!! TTTATTGGTTGATGAATAAT+GGG - chr2_4:1149026-1149045 Msa0307950:intron 20.0%
!!! TCCTAGGTTTTTATTTTTTT+TGG - chr2_4:1149144-1149163 Msa0307950:intron 20.0%
!! TCCAAAAAAAATAAAAACCT+AGG + chr2_4:1149148-1149167 None:intergenic 20.0%
!!! TAGGTTTTTATTTTTTTTGG+AGG - chr2_4:1149147-1149166 Msa0307950:intron 20.0%
!!! AATATATGGTTTTAAGTTGT+TGG - chr2_4:1149642-1149661 Msa0307950:intron 20.0%
!!! ATATATGGTTTTAAGTTGTT+GGG - chr2_4:1149643-1149662 Msa0307950:intron 20.0%
!!! GTAAACAAACAAATTTTGTT+AGG + chr2_4:1149996-1150015 None:intergenic 20.0%
!! ATTTGTTTGTTTACTTCAAT+TGG - chr2_4:1150002-1150021 Msa0307950:intron 20.0%
!! TATAAAAGTAAAGAAAGTGA+TGG + chr2_4:1150304-1150323 None:intergenic 20.0%
!! TTTCACATTGTAAACAAATT+TGG + chr2_4:1150463-1150482 None:intergenic 20.0%
!!! ATATTTTTTATATCTGTCTC+TGG + chr2_4:1150677-1150696 None:intergenic 20.0%
!! AATTTAATTGCTAAGGATAA+TGG - chr2_4:1151046-1151065 Msa0307950:intron 20.0%
!!! GGAAATTTTAATAACAGAAA+AGG + chr2_4:1151155-1151174 None:intergenic 20.0%
!!! ATTTTTGATTCTACAAAGTA+TGG + chr2_4:1151562-1151581 None:intergenic 20.0%
!! TACAAAAATAAAGGAATTTG+AGG + chr2_4:1152053-1152072 None:intergenic 20.0%
! TTTGCAATTTATCTACATTC+AGG + chr2_4:1148478-1148497 None:intergenic 25.0%
! TGAATATTATACGGTGTAAA+GGG + chr2_4:1148722-1148741 None:intergenic 25.0%
! ATGAATATTATACGGTGTAA+AGG + chr2_4:1148723-1148742 None:intergenic 25.0%
!! AATGACTACTTCGATATTTT+TGG - chr2_4:1148923-1148942 Msa0307950:intron 25.0%
! GTCTGTTTATATTTAATCCT+AGG - chr2_4:1149128-1149147 Msa0307950:intron 25.0%
!!! TTTTGGAGGAATTTAATACT+AGG - chr2_4:1149161-1149180 Msa0307950:intron 25.0%
! ATAGTGAGTGGTTAAATATA+GGG + chr2_4:1149370-1149389 None:intergenic 25.0%
! GTCCTTAACATTATTAATGA+AGG - chr2_4:1149430-1149449 Msa0307950:intron 25.0%
! GTCCTTCATTAATAATGTTA+AGG + chr2_4:1149435-1149454 None:intergenic 25.0%
! TTGAAATGCTTATAATCTCA+AGG - chr2_4:1149490-1149509 Msa0307950:CDS 25.0%
!! TTTTAAATTAAAACAGGGAG+AGG - chr2_4:1149752-1149771 Msa0307950:CDS 25.0%
!! TACTCTTTGTTTCAAAGATT+TGG - chr2_4:1149941-1149960 Msa0307950:intron 25.0%
! TTTGTTTACTTCAATTGGTT+AGG - chr2_4:1150007-1150026 Msa0307950:intron 25.0%
! TGAACATATGAAAAGTTCAA+TGG - chr2_4:1150190-1150209 Msa0307950:intron 25.0%
! AATGAAAAATTTCCTCATCA+CGG + chr2_4:1150238-1150257 None:intergenic 25.0%
!! TGATGAGGAAATTTTTCATT+TGG - chr2_4:1150238-1150257 Msa0307950:intron 25.0%
! AAGCTTCAACTAACAAATTA+TGG + chr2_4:1150369-1150388 None:intergenic 25.0%
!! ACTGAACTGATTTAAAACAA+GGG + chr2_4:1150599-1150618 None:intergenic 25.0%
!! TACTGAACTGATTTAAAACA+AGG + chr2_4:1150600-1150619 None:intergenic 25.0%
! GTTACTGCAATTGATTATAT+TGG - chr2_4:1150741-1150760 Msa0307950:intron 25.0%
!!! AGCATGTTTTTAAATGGAAA+AGG + chr2_4:1150804-1150823 None:intergenic 25.0%
!!! TGAGAAAGCATGTTTTTAAA+TGG + chr2_4:1150810-1150829 None:intergenic 25.0%
! TTTCGATTGAACATAAACAT+TGG + chr2_4:1150900-1150919 None:intergenic 25.0%
!!! GATTTTGATGAAGTGAAAAA+AGG + chr2_4:1150957-1150976 None:intergenic 25.0%
! GAGAAAGAAAAATAAAAGCT+GGG + chr2_4:1150979-1150998 None:intergenic 25.0%
! AGAGAAAGAAAAATAAAAGC+TGG + chr2_4:1150980-1150999 None:intergenic 25.0%
! TTAAAATTTCCTGCAGATTA+TGG - chr2_4:1151164-1151183 Msa0307950:CDS 25.0%
! CTTGAAAATTCTATTTCGTA+AGG - chr2_4:1151254-1151273 Msa0307950:intron 25.0%
! TTATTATACTCGTGTAATTG+AGG - chr2_4:1151475-1151494 Msa0307950:intron 25.0%
! CCAATTGCATAAAAATATGT+AGG + chr2_4:1151694-1151713 None:intergenic 25.0%
!!! CCTACATATTTTTATGCAAT+TGG - chr2_4:1151691-1151710 Msa0307950:intron 25.0%
! TAATATCTCTGTAAAATGTG+TGG - chr2_4:1151738-1151757 Msa0307950:intron 25.0%
! AATATCTCTGTAAAATGTGT+GGG - chr2_4:1151739-1151758 Msa0307950:intron 25.0%
! ATTGTTAATCATCATTTCTC+AGG - chr2_4:1151859-1151878 Msa0307950:intron 25.0%
!!! TACATTTTATTTTGAAAGCC+TGG + chr2_4:1151923-1151942 None:intergenic 25.0%
! ATCAATGGTTATTTACTCAT+AGG + chr2_4:1152198-1152217 None:intergenic 25.0%
! GATACAAATGATGTAATCAA+TGG + chr2_4:1152213-1152232 None:intergenic 25.0%
! GATTACATCATTTGTATCAA+TGG - chr2_4:1152215-1152234 Msa0307950:CDS 25.0%
TGTTCGTATAAAGTTGAAGA+AGG + chr2_4:1148636-1148655 None:intergenic 30.0%
TAGTCATTTGAATGATCAAC+AGG + chr2_4:1148911-1148930 None:intergenic 30.0%
!!! GGATTTTGTTTTTGTTGTTC+TGG - chr2_4:1148964-1148983 Msa0307950:intron 30.0%
TACGTTCCAATATTTCAAGA+AGG - chr2_4:1149314-1149333 Msa0307950:intron 30.0%
TCGACAATTTAATAGAGTCA+AGG + chr2_4:1149341-1149360 None:intergenic 30.0%
GATAGTGAGTGGTTAAATAT+AGG + chr2_4:1149371-1149390 None:intergenic 30.0%
TTTGTAGGACTATCTCAAAT+TGG + chr2_4:1149517-1149536 None:intergenic 30.0%
! AAATTCGTCCTTGATTTTGT+AGG + chr2_4:1149532-1149551 None:intergenic 30.0%
TACAAAATCAAGGACGAATT+TGG - chr2_4:1149531-1149550 Msa0307950:CDS 30.0%
ATATATTGAAAGTCCAGCAA+TGG + chr2_4:1149629-1149648 None:intergenic 30.0%
ATTGCTGGACTTTCAATATA+TGG - chr2_4:1149628-1149647 Msa0307950:intron 30.0%
AAAGAAACTACATCCTGATT+TGG - chr2_4:1149825-1149844 Msa0307950:intron 30.0%
AGAGATAATGACAAAGACAT+CGG + chr2_4:1149918-1149937 None:intergenic 30.0%
TGCATCATCAATTTGAATCT+TGG + chr2_4:1150139-1150158 None:intergenic 30.0%
TAAATTAAATGTGTCGCAAC+AGG - chr2_4:1150274-1150293 Msa0307950:intron 30.0%
! ATTTGTTAGTTGAAGCTTGA+TGG - chr2_4:1150371-1150390 Msa0307950:intron 30.0%
TTATATCCATACAATTGCGA+TGG - chr2_4:1150714-1150733 Msa0307950:intron 30.0%
ATGTTCAATCGAAATGAAAG+TGG - chr2_4:1150906-1150925 Msa0307950:CDS 30.0%
!! ACTCTGGAATTTAATTGCTA+AGG - chr2_4:1151039-1151058 Msa0307950:intron 30.0%
ATAACAGAAAAGGATTAGAG+TGG + chr2_4:1151145-1151164 None:intergenic 30.0%
! TTGTAAAGAAGCTTTGATAC+AGG - chr2_4:1151501-1151520 Msa0307950:intron 30.0%
ATTCTACAAAGTATGGTGTA+AGG + chr2_4:1151555-1151574 None:intergenic 30.0%
TCGAAAAGAATTGAAGCTTA+AGG - chr2_4:1151589-1151608 Msa0307950:intron 30.0%
!! AGAAACAAATGATAATGGGA+TGG - chr2_4:1151649-1151668 Msa0307950:intron 30.0%
AATGTGTGGGATAAAATGTT+TGG - chr2_4:1151752-1151771 Msa0307950:intron 30.0%
AAGACAGTTCACAAAGTTAT+TGG + chr2_4:1151779-1151798 None:intergenic 30.0%
!! TATATAAGTAGAAGCATCAG+TGG + chr2_4:1151958-1151977 None:intergenic 30.0%
GATTCGAAATTCAAAAGTAG+TGG + chr2_4:1151997-1152016 None:intergenic 30.0%
! TATTGATGATATGTTGGTGT+AGG - chr2_4:1152077-1152096 Msa0307950:CDS 30.0%
! TTGATCCTACATGTGTTTTT+CGG - chr2_4:1152418-1152437 Msa0307950:five_prime_UTR 30.0%
ACACTCAAAACATTCATATC+TGG - chr2_4:1152456-1152475 Msa0307950:five_prime_UTR 30.0%
AGGATTCATGAAATTTGGGA+GGG + chr2_4:1148562-1148581 None:intergenic 35.0%
AAGGATTCATGAAATTTGGG+AGG + chr2_4:1148563-1148582 None:intergenic 35.0%
AAGTTGAAGAAGGTTGAAAG+AGG + chr2_4:1148626-1148645 None:intergenic 35.0%
! GGAGATTGAGGTTTAAGATA+AGG + chr2_4:1148692-1148711 None:intergenic 35.0%
ATATTATACGGTGTAAAGGG+TGG + chr2_4:1148719-1148738 None:intergenic 35.0%
TTGGATTGTAAGTTTCTGTC+TGG - chr2_4:1148942-1148961 Msa0307950:intron 35.0%
TGGATTGTAAGTTTCTGTCT+GGG - chr2_4:1148943-1148962 Msa0307950:intron 35.0%
CAAGGACCTTCTTGAAATAT+TGG + chr2_4:1149323-1149342 None:intergenic 35.0%
!! GAGACTTAATTGATAGTGAG+TGG + chr2_4:1149382-1149401 None:intergenic 35.0%
ACTACAATTTGACAGAGTCA+GGG - chr2_4:1149462-1149481 Msa0307950:intron 35.0%
GAGATAGTCCTACAAAATCA+AGG - chr2_4:1149521-1149540 Msa0307950:CDS 35.0%
AAAATCAAGGACGAATTTGG+TGG - chr2_4:1149534-1149553 Msa0307950:CDS 35.0%
!!! ATGGTTTTAAGTTGTTGGGA+TGG - chr2_4:1149647-1149666 Msa0307950:intron 35.0%
! GATTTTGAATGCACCAAATC+AGG + chr2_4:1149841-1149860 None:intergenic 35.0%
! TTTGGTGCATTCAAAATCTC+AGG - chr2_4:1149843-1149862 Msa0307950:intron 35.0%
AATCTCAGGTTTGTCTTCTT+AGG - chr2_4:1149857-1149876 Msa0307950:intron 35.0%
ATCTCAGGTTTGTCTTCTTA+GGG - chr2_4:1149858-1149877 Msa0307950:intron 35.0%
GAGATAATGACAAAGACATC+GGG + chr2_4:1149917-1149936 None:intergenic 35.0%
ATGTAAATCGCTCTTGACAA+AGG + chr2_4:1150098-1150117 None:intergenic 35.0%
TTTGTCAAGAGCGATTTACA+TGG - chr2_4:1150097-1150116 Msa0307950:intron 35.0%
AATTATGGCGCAACATTACT+TGG + chr2_4:1150354-1150373 None:intergenic 35.0%
AGATCCAGAATTATTAGCAG+AGG - chr2_4:1150424-1150443 Msa0307950:intron 35.0%
GTTACCTCTGCTAATAATTC+TGG + chr2_4:1150431-1150450 None:intergenic 35.0%
! CAAGAACAATCACAGTTTTC+TGG - chr2_4:1150523-1150542 Msa0307950:intron 35.0%
CAAAATGTCTTGAGATTTGC+TGG - chr2_4:1150560-1150579 Msa0307950:CDS 35.0%
TCAGTAGTTTACCAAAATCC+AGG - chr2_4:1150614-1150633 Msa0307950:intron 35.0%
CAGTAGTTTACCAAAATCCA+GGG - chr2_4:1150615-1150634 Msa0307950:intron 35.0%
! CTATTTTATGTTCGGGCAAA+AGG + chr2_4:1151018-1151037 None:intergenic 35.0%
! CTTTTGCCCGAACATAAAAT+AGG - chr2_4:1151016-1151035 Msa0307950:intron 35.0%
! CAGAGTCCTATTTTATGTTC+GGG + chr2_4:1151025-1151044 None:intergenic 35.0%
! CCAGAGTCCTATTTTATGTT+CGG + chr2_4:1151026-1151045 None:intergenic 35.0%
GTATTTCACTCTTCTACACA+AGG - chr2_4:1151107-1151126 Msa0307950:intron 35.0%
AGAGTTAGTTGCTTCTTCAA+CGG + chr2_4:1151202-1151221 None:intergenic 35.0%
!! GTGAACTGTCTTTTGCTTTT+TGG - chr2_4:1151787-1151806 Msa0307950:intron 35.0%
!!! AACTGTCTTTTGCTTTTTGG+TGG - chr2_4:1151790-1151809 Msa0307950:intron 35.0%
! ATTTGCTGATTGCAATGAAG+TGG - chr2_4:1152172-1152191 Msa0307950:CDS 35.0%
TTGAATGAGTGTTCATGCTA+GGG + chr2_4:1152309-1152328 None:intergenic 35.0%
! CAAGTGTTGCAAATTTACCT+AGG + chr2_4:1152401-1152420 None:intergenic 35.0%
GAAGAAGGTTGAAAGAGGTT+TGG + chr2_4:1148621-1148640 None:intergenic 40.0%
ACGTTGAGGAATCGAAGTTA+AGG + chr2_4:1148663-1148682 None:intergenic 40.0%
AGATAAGGTGATACACGTTG+AGG + chr2_4:1148677-1148696 None:intergenic 40.0%
ATTCTTCATTTGGGTCTCTG+CGG - chr2_4:1148765-1148784 Msa0307950:CDS 40.0%
!!! TGTTTTTGTTGTTCTGGCTC+TGG - chr2_4:1148970-1148989 Msa0307950:intron 40.0%
!!! GTTTTTGTTGTTCTGGCTCT+GGG - chr2_4:1148971-1148990 Msa0307950:intron 40.0%
GACTACAATTTGACAGAGTC+AGG - chr2_4:1149461-1149480 Msa0307950:intron 40.0%
!!! GTTTTAAGTTGTTGGGATGG+AGG - chr2_4:1149650-1149669 Msa0307950:intron 40.0%
!! TGACGTAGAGGGTATTGATT+TGG - chr2_4:1149780-1149799 Msa0307950:intron 40.0%
!! GTAGAGGGTATTGATTTGGA+GGG - chr2_4:1149784-1149803 Msa0307950:intron 40.0%
!! TAGAGGGTATTGATTTGGAG+GGG - chr2_4:1149785-1149804 Msa0307950:intron 40.0%
TCTCAGGTTTGTCTTCTTAG+GGG - chr2_4:1149859-1149878 Msa0307950:intron 40.0%
TTAGTTGAAGCTTGATGGAG+TGG - chr2_4:1150376-1150395 Msa0307950:intron 40.0%
ACAAAGCCATCGCAATTGTA+TGG + chr2_4:1150723-1150742 None:intergenic 40.0%
GAAAGTGGCATTTCTGTTCT+AGG - chr2_4:1150921-1150940 Msa0307950:CDS 40.0%
CCGAACATAAAATAGGACTC+TGG - chr2_4:1151023-1151042 Msa0307950:intron 40.0%
ACAGAAAAGGATTAGAGTGG+AGG + chr2_4:1151142-1151161 None:intergenic 40.0%
TCCTGCAGATTATGGAAATC+AGG - chr2_4:1151172-1151191 Msa0307950:CDS 40.0%
CCTGCAGATTATGGAAATCA+GGG - chr2_4:1151173-1151192 Msa0307950:CDS 40.0%
TGAAGAAGCAACTAACTCTG+AGG - chr2_4:1151203-1151222 Msa0307950:intron 40.0%
TTTGAATCAGATTCGCTCTG+AGG - chr2_4:1151227-1151246 Msa0307950:intron 40.0%
GCATCTGGATGAACATTCAA+AGG + chr2_4:1151364-1151383 None:intergenic 40.0%
TTGAATGTTCATCCAGATGC+AGG - chr2_4:1151364-1151383 Msa0307950:intron 40.0%
! TTTGCATTTTCTCCTGCATC+TGG + chr2_4:1151379-1151398 None:intergenic 40.0%
TGCAGGAGAAAATGCAAAGT+TGG - chr2_4:1151381-1151400 Msa0307950:intron 40.0%
! CGTTGCTGTTATGTTTGTTC+TGG - chr2_4:1151886-1151905 Msa0307950:intron 40.0%
!!! GTTCTGGCTTTTATGAATCC+AGG - chr2_4:1151902-1151921 Msa0307950:intron 40.0%
TTGAGGCACAATTACAAGCA+GGG + chr2_4:1152036-1152055 None:intergenic 40.0%
! TTTGAGGCACAATTACAAGC+AGG + chr2_4:1152037-1152056 None:intergenic 40.0%
ACGTGCATAGCAAAGCAATA+AGG + chr2_4:1152242-1152261 None:intergenic 40.0%
! TTGCTTTGCTATGCACGTAT+CGG - chr2_4:1152244-1152263 Msa0307950:CDS 40.0%
CTTGAATGAGTGTTCATGCT+AGG + chr2_4:1152310-1152329 None:intergenic 40.0%
AGAATTTCCAACCCACATGC+TGG - chr2_4:1148822-1148841 Msa0307950:CDS 45.0%
GCATGACAATTCCAGCATGT+GGG + chr2_4:1148836-1148855 None:intergenic 45.0%
AGCATGACAATTCCAGCATG+TGG + chr2_4:1148837-1148856 None:intergenic 45.0%
!! AAGAGGAAAGGTGCTGATTG+AGG + chr2_4:1148863-1148882 None:intergenic 45.0%
CACGATTGACAGAAGAGGAA+AGG + chr2_4:1148875-1148894 None:intergenic 45.0%
GTGTTTCATCAAGCTGCAAG+AGG - chr2_4:1149236-1149255 Msa0307950:intron 45.0%
!! GAGAGCGCTCTACAAAGTTA+AGG + chr2_4:1149291-1149310 None:intergenic 45.0%
! GAGAGGAAGTATGACGTAGA+GGG - chr2_4:1149769-1149788 Msa0307950:CDS 45.0%
!! CGTAGAGGGTATTGATTTGG+AGG - chr2_4:1149783-1149802 Msa0307950:intron 45.0%
! TGATTTGGAGGGGAAGTACA+AGG - chr2_4:1149795-1149814 Msa0307950:intron 45.0%
TATACCTGTTCTCCGTGATG+AGG - chr2_4:1150223-1150242 Msa0307950:intron 45.0%
ATTTCCTCATCACGGAGAAC+AGG + chr2_4:1150230-1150249 None:intergenic 45.0%
!! TGATGGAGTGGAAGTTGATG+AGG - chr2_4:1150388-1150407 Msa0307950:intron 45.0%
! CGACTGTTTACCCTGGATTT+TGG + chr2_4:1150628-1150647 None:intergenic 45.0%
CTTTACACGACTGTTTACCC+TGG + chr2_4:1150635-1150654 None:intergenic 45.0%
CCCTGATTTCCATAATCTGC+AGG + chr2_4:1151176-1151195 None:intergenic 45.0%
!!! CTTTTGGAAAGCATCAGCGA+AGG + chr2_4:1151414-1151433 None:intergenic 45.0%
TCGCTGATGCTTTCCAAAAG+CGG - chr2_4:1151414-1151433 Msa0307950:intron 45.0%
! CTTCTTCAAAGTCCCGCTTT+TGG + chr2_4:1151430-1151449 None:intergenic 45.0%
TCCAAGATGGAGCTATTCCT+TGG - chr2_4:1152102-1152121 Msa0307950:CDS 45.0%
CCAAGATGGAGCTATTCCTT+GGG - chr2_4:1152103-1152122 Msa0307950:CDS 45.0%
CAAGATGGAGCTATTCCTTG+GGG - chr2_4:1152104-1152123 Msa0307950:CDS 45.0%
!! TGTTGCTTTGTTGCATGCAG+CGG + chr2_4:1152334-1152353 None:intergenic 45.0%
! TGTACGTATTTTCCTCGCCT+AGG - chr2_4:1152381-1152400 Msa0307950:five_prime_UTR 45.0%
GTTGCAAATTTACCTAGGCG+AGG + chr2_4:1152396-1152415 None:intergenic 45.0%
CGGTGACAGAGTCAAAGACA+TGG + chr2_4:1148506-1148525 None:intergenic 50.0%
!! AAGGGTGGTGATGGAGATTG+AGG + chr2_4:1148704-1148723 None:intergenic 50.0%
TACGGTGTAAAGGGTGGTGA+TGG + chr2_4:1148713-1148732 None:intergenic 50.0%
!! GTGGGTTGGAAATTCTCAGC+AGG + chr2_4:1148818-1148837 None:intergenic 50.0%
GACAATTCCAGCATGTGGGT+TGG + chr2_4:1148832-1148851 None:intergenic 50.0%
AGCGACACGATTGACAGAAG+AGG + chr2_4:1148880-1148899 None:intergenic 50.0%
!! TTTGTTGTTCTGGCTCTGGG+TGG - chr2_4:1148974-1148993 Msa0307950:intron 50.0%
!! TTGTTGTTCTGGCTCTGGGT+GGG - chr2_4:1148975-1148994 Msa0307950:intron 50.0%
! GGAGAGGAAGTATGACGTAG+AGG - chr2_4:1149768-1149787 Msa0307950:CDS 50.0%
CGCTGATGCTTTCCAAAAGC+GGG - chr2_4:1151415-1151434 Msa0307950:intron 50.0%
GTTGGTGTAGGCTTCCAAGA+TGG - chr2_4:1152089-1152108 Msa0307950:CDS 50.0%
CCCAAGGAATAGCTCCATCT+TGG + chr2_4:1152106-1152125 None:intergenic 50.0%
GAGTGTTCATGCTAGGGATG+TGG + chr2_4:1152303-1152322 None:intergenic 50.0%
CCTCGCCGAAAAACACATGT+AGG + chr2_4:1152426-1152445 None:intergenic 50.0%
!! CCTACATGTGTTTTTCGGCG+AGG - chr2_4:1152423-1152442 Msa0307950:five_prime_UTR 50.0%
CCAGCAATGGAACTCGAGTC+AGG + chr2_4:1149616-1149635 None:intergenic 55.0%
! CCTGACTCGAGTTCCATTGC+TGG - chr2_4:1149613-1149632 Msa0307950:intron 55.0%
! TGGAGGGGAAGTACAAGGAG+TGG - chr2_4:1149800-1149819 Msa0307950:intron 55.0%
GATGGAGCTATTCCTTGGGG+CGG - chr2_4:1152107-1152126 Msa0307950:CDS 55.0%
CTATTCCTTGGGGCGGCAAA+TGG - chr2_4:1152114-1152133 Msa0307950:CDS 55.0%
ATCTACCATTTGCCGCCCCA+AGG + chr2_4:1152122-1152141 None:intergenic 55.0%
CATGCTAGGGATGTGGCTCA+TGG + chr2_4:1152296-1152315 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 1148467 1152505 1148467 ID=Msa0307950;Name=Msa0307950
chr2_4 mRNA 1148467 1152505 1148467 ID=Msa0307950-mRNA-1;Parent=Msa0307950;Name=Msa0307950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132|0.83|0.85|1|1|1|7|296|301
chr2_4 exon 1148467 1148873 1148467 ID=Msa0307950-mRNA-1:exon:405;Parent=Msa0307950-mRNA-1
chr2_4 exon 1149470 1149592 1149470 ID=Msa0307950-mRNA-1:exon:404;Parent=Msa0307950-mRNA-1
chr2_4 exon 1149724 1149792 1149724 ID=Msa0307950-mRNA-1:exon:403;Parent=Msa0307950-mRNA-1
chr2_4 exon 1150527 1150592 1150527 ID=Msa0307950-mRNA-1:exon:402;Parent=Msa0307950-mRNA-1
chr2_4 exon 1150854 1150943 1150854 ID=Msa0307950-mRNA-1:exon:401;Parent=Msa0307950-mRNA-1
chr2_4 exon 1151108 1151204 1151108 ID=Msa0307950-mRNA-1:exon:400;Parent=Msa0307950-mRNA-1
chr2_4 exon 1152024 1152505 1152024 ID=Msa0307950-mRNA-1:exon:399;Parent=Msa0307950-mRNA-1
chr2_4 five_prime_UTR 1152374 1152505 1152374 ID=Msa0307950-mRNA-1:five_prime_utr;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1152024 1152373 1152024 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1151108 1151204 1151108 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1150854 1150943 1150854 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1150527 1150592 1150527 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1149724 1149792 1149724 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1149470 1149592 1149470 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 CDS 1148763 1148873 1148763 ID=Msa0307950-mRNA-1:cds;Parent=Msa0307950-mRNA-1
chr2_4 three_prime_UTR 1148467 1148762 1148467 ID=Msa0307950-mRNA-1:three_prime_utr;Parent=Msa0307950-mRNA-1
Gene Sequence

>Msa0307950

ATGACAAAGAAATATCTCTCCAAACCTCTTTCAACCTTCTTCAACTTTATACGAACACGAACCTTAACTTCGATTCCTCAACGTGTATCACCTTATCTTAAACCTCAATCTCCATCACCACCCTTTACACCGTATAATATTCATAATCTATATCATAATTACGATTATTCTTCATTTGGGTCTCTGCGGTTTTGCAGAAAAAGTTTGTGTTCAAAACCTGCTGAGAATTTCCAACCCACATGCTGGAATTGTCATGCTGTTCCTCAATCAGCACCTTTCCTCTTCTGTCAATCGTGTCGCTGTATTCAACCTGTTGATCATTCAAATGACTACTTCGATATTTTTGGATTGGAGAGGAAGTATGACGTAGAGGGTATTGATTTGGAGGGGAAGTACAAGGAGTGGCAAAAGAAACTACATCCTGATTTGGTGCATTCAAAATCTCAGGAAGAAAAAGATTATGCTGCTGAACAATCTGCAAGAGTGATTGATGCATATCGTACACTTAGCAAACCTTTGTCAAGAGCGATTTACATGTTGAAGCTTGATGGAGTGGAAGTTGATGAGGAGCAGACAATTTCAGATCCAGAATTATTAGCAGAGATTATGGAAATCAGGGAAGCCGTTGAAGAAGCAACTAACTCTGAGGCTTTGAATCAGATTCGCTCTGAGATGCAGGAGAAAATGCAAAGTTGGTCTAATGCCTTCGCTGATGCTTTCCAAAAGCGGGACTTTGAAGAAGCAAAGAATGCAATTAGAAGAATGATTTATTATACTCGTGTAATTGAGGAAGTTGCTTCCAAGATGGAGCTATTCCTTGGGGCGGCAAATGGTAGATCATTGCTGAGTATGAACTACGAAGAATTTGATTTGCTGATTGCAATGAAGTGGCCTATGAGTAAATAA

Protein sequence

>Msa0307950

MTKKYLSKPLSTFFNFIRTRTLTSIPQRVSPYLKPQSPSPPFTPYNIHNLYHNYDYSSFGSLRFCRKSLCSKPAENFQPTCWNCHAVPQSAPFLFCQSCRCIQPVDHSNDYFDIFGLERKYDVEGIDLEGKYKEWQKKLHPDLVHSKSQEEKDYAAEQSARVIDAYRTLSKPLSRAIYMLKLDGVEVDEEQTISDPELLAEIMEIREAVEEATNSEALNQIRSEMQEKMQSWSNAFADAFQKRDFEEAKNAIRRMIYYTRVIEEVASKMELFLGAANGRSLLSMNYEEFDLLIAMKWPMSK*