Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023470 | sp|Q8L7K4|HSCB_ARATH | 57.277 | 213 | 84 | 2 | 57 | 269 | 47 | 252 | 2.16e-85 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023470 | A0A072VJB2 | 84.444 | 315 | 35 | 1 | 1 | 301 | 1 | 315 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023470 | Msa0092990 | 0.823170 | 1.599783e-53 | -8.615850e-47 |
| Msa0023470 | Msa0178860 | -0.851637 | 7.794981e-61 | -8.615850e-47 |
| Msa0023470 | Msa0191910 | 0.811184 | 7.948196e-51 | -8.615850e-47 |
| Msa0023470 | Msa0233610 | 0.817773 | 2.770973e-52 | -8.615850e-47 |
| Msa0023470 | Msa0267310 | 0.812955 | 3.267638e-51 | -8.615850e-47 |
| Msa0023470 | Msa0269450 | 0.826600 | 2.482375e-54 | -8.615850e-47 |
| Msa0023470 | Msa0307950 | 0.982022 | 4.936910e-154 | -8.615850e-47 |
| Msa0023470 | Msa0347610 | 0.803094 | 4.107558e-49 | -8.615850e-47 |
| Msa0023470 | Msa0352330 | 0.806477 | 8.069812e-50 | -8.615850e-47 |
| Msa0023470 | Msa0379640 | 0.801246 | 9.859343e-49 | -8.615850e-47 |
| Msa0023470 | Msa0389810 | 0.817696 | 2.884785e-52 | -8.615850e-47 |
| Msa0023470 | Msa0394340 | 0.803559 | 3.290031e-49 | -8.615850e-47 |
| Msa0023470 | Msa0399340 | 0.844458 | 7.468655e-59 | -8.615850e-47 |
| Msa0023470 | Msa0404030 | 0.801364 | 9.322969e-49 | -8.615850e-47 |
| Msa0023470 | Msa0412840 | 0.800744 | 1.248582e-48 | -8.615850e-47 |
| Msa0023470 | Msa0442200 | 0.836660 | 8.213063e-57 | -8.615850e-47 |
| Msa0023470 | Msa0442850 | 0.800803 | 1.214302e-48 | -8.615850e-47 |
| Msa0023470 | Msa0443920 | 0.804339 | 2.264951e-49 | -8.615850e-47 |
| Msa0023470 | Msa0468130 | 0.825526 | 4.466631e-54 | -8.615850e-47 |
| Msa0023470 | Msa0477080 | 0.821791 | 3.346146e-53 | -8.615850e-47 |
| Msa0023470 | Msa0489610 | 0.812915 | 3.333317e-51 | -8.615850e-47 |
| Msa0023470 | Msa0553220 | -0.808007 | 3.826271e-50 | -8.615850e-47 |
| Msa0023470 | Msa0555200 | 0.807183 | 5.723417e-50 | -8.615850e-47 |
| Msa0023470 | Msa0558690 | 0.813157 | 2.950715e-51 | -8.615850e-47 |
| Msa0023470 | Msa0561130 | -0.809817 | 1.568670e-50 | -8.615850e-47 |
| Msa0023470 | Msa0575470 | 0.808381 | 3.184771e-50 | -8.615850e-47 |
| Msa0023470 | Msa0580420 | 0.802697 | 4.961047e-49 | -8.615850e-47 |
| Msa0023470 | Msa0599580 | 0.846016 | 2.830032e-59 | -8.615850e-47 |
| Msa0023470 | Msa0608710 | 0.847706 | 9.757859e-60 | -8.615850e-47 |
| Msa0023470 | Msa0661190 | -0.802713 | 4.923781e-49 | -8.615850e-47 |
| Msa0023470 | Msa0662650 | 0.830468 | 2.887192e-55 | -8.615850e-47 |
| Msa0023470 | Msa0688670 | 0.802140 | 6.460118e-49 | -8.615850e-47 |
| Msa0023470 | Msa0708860 | 0.824795 | 6.649091e-54 | -8.615850e-47 |
| Msa0023470 | Msa0771720 | 0.819678 | 1.024060e-52 | -8.615850e-47 |
| Msa0023470 | Msa0795920 | 0.828520 | 8.591556e-55 | -8.615850e-47 |
| Msa0023470 | Msa0869120 | 0.817308 | 3.527958e-52 | -8.615850e-47 |
| Msa0023470 | Msa0944550 | 0.817312 | 3.519799e-52 | -8.615850e-47 |
| Msa0023470 | Msa0982270 | 0.826488 | 2.639471e-54 | -8.615850e-47 |
| Msa0023470 | Msa1002480 | 0.824938 | 6.152449e-54 | -8.615850e-47 |
| Msa0023470 | Msa1012830 | 0.813282 | 2.770323e-51 | -8.615850e-47 |
| Msa0023470 | Msa1021540 | 0.811286 | 7.552681e-51 | -8.615850e-47 |
| Msa0023470 | Msa1039880 | 0.824791 | 6.665025e-54 | -8.615850e-47 |
| Msa0023470 | Msa1063510 | 0.804231 | 2.385503e-49 | -8.615850e-47 |
| Msa0023470 | Msa1072460 | -0.805867 | 1.084789e-49 | -8.615850e-47 |
| Msa0023470 | Msa1079730 | -0.822764 | 1.989201e-53 | -8.615850e-47 |
| Msa0023470 | Msa1082820 | -0.801694 | 7.979381e-49 | -8.615850e-47 |
| Msa0023470 | Msa1092090 | 0.828157 | 1.050672e-54 | -8.615850e-47 |
| Msa0023470 | Msa1132890 | 0.817664 | 2.932668e-52 | -8.615850e-47 |
| Msa0023470 | Msa1143930 | -0.813903 | 2.021752e-51 | -8.615850e-47 |
| Msa0023470 | Msa1168040 | -0.804285 | 2.325061e-49 | -8.615850e-47 |
| Msa0023470 | Msa1187520 | 0.804173 | 2.453280e-49 | -8.615850e-47 |
| Msa0023470 | Msa1199560 | 0.821000 | 5.094494e-53 | -8.615850e-47 |
| Msa0023470 | Msa1217810 | 0.808619 | 2.833490e-50 | -8.615850e-47 |
| Msa0023470 | Msa1233500 | 0.825842 | 3.760686e-54 | -8.615850e-47 |
| Msa0023470 | Msa1267260 | 0.806156 | 9.430668e-50 | -8.615850e-47 |
| Msa0023470 | Msa1279210 | 0.825421 | 4.730028e-54 | -8.615850e-47 |
| Msa0023470 | Msa1282920 | 0.800216 | 1.599394e-48 | -8.615850e-47 |
| Msa0023470 | Msa1296880 | 0.803996 | 2.670506e-49 | -8.615850e-47 |
| Msa0023470 | Msa1300050 | 0.801085 | 1.063400e-48 | -8.615850e-47 |
| Msa0023470 | Msa1302190 | -0.835116 | 2.023793e-56 | -8.615850e-47 |
| Msa0023470 | Msa1307740 | 0.815334 | 9.750403e-52 | -8.615850e-47 |
| Msa0023470 | Msa1322190 | 0.842539 | 2.431194e-58 | -8.615850e-47 |
| Msa0023470 | Msa1328700 | 0.840924 | 6.486396e-58 | -8.615850e-47 |
| Msa0023470 | Msa1382930 | 0.810233 | 1.276213e-50 | -8.615850e-47 |
| Msa0023470 | Msa1401290 | 0.815158 | 1.067055e-51 | -8.615850e-47 |
| Msa0023470 | Msa1403340 | 0.806796 | 6.911777e-50 | -8.615850e-47 |
| Msa0023470 | Msa1425010 | 0.802751 | 4.835348e-49 | -8.615850e-47 |
| Msa0023470 | Msa1435370 | 0.815979 | 7.004888e-52 | -8.615850e-47 |
| Msa0023470 | Msa1438910 | 0.804436 | 2.162722e-49 | -8.615850e-47 |
| Msa0023470 | Msa1440000 | 0.830293 | 3.186282e-55 | -8.615850e-47 |
| Msa0023470 | Msa1440910 | 0.806873 | 6.659325e-50 | -8.615850e-47 |
| Msa0023470 | Msa1444740 | 0.839718 | 1.340092e-57 | -8.615850e-47 |
| Msa0023470 | Msa1459760 | -0.810599 | 1.063891e-50 | -8.615850e-47 |
| Msa0023470 | Msa1462840 | 0.812512 | 4.085060e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023470 | MtrunA17_Chr1g0176801 | 92.193 | 269 | 21 | 0 | 1 | 269 | 1 | 269 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023470 | AT5G06410.1 | 57.277 | 213 | 84 | 2 | 57 | 269 | 47 | 252 | 2.20e-86 | 259 |
Find 81 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAAGGATTCATGAAATT+TGG | 0.145260 | 1_1:+44750361 | None:intergenic |
| CATTGTTGAATATGTAATTA+AGG | 0.224741 | 1_1:+44750346 | None:intergenic |
| GTTACCTCTGCTAATAATTC+TGG | 0.226330 | 1_1:+44748497 | None:intergenic |
| ATTAAGGATTCATGAAATTT+GGG | 0.280069 | 1_1:+44750362 | None:intergenic |
| AATTACGATTATTCTTCATT+TGG | 0.301008 | 1_1:-44750170 | Msa0023470:CDS |
| TGACGTAGAGGGTATTGATT+TGG | 0.315123 | 1_1:-44749145 | Msa0023470:CDS |
| TCCTGCAGATTATGGAAATC+AGG | 0.317640 | 1_1:-44747753 | Msa0023470:intron |
| CTTCTTCAAAGTCCCGCTTT+TGG | 0.322648 | 1_1:+44747498 | None:intergenic |
| TTTGCAATTTATCTACATTC+AGG | 0.324373 | 1_1:+44750451 | None:intergenic |
| ATTTGTTAGTTGAAGCTTGA+TGG | 0.324638 | 1_1:-44748554 | Msa0023470:intron |
| ATTACGATTATTCTTCATTT+GGG | 0.344545 | 1_1:-44750169 | Msa0023470:CDS |
| GAAGAAGGTTGAAAGAGGTT+TGG | 0.374076 | 1_1:+44750307 | None:intergenic |
| TCCAAGATGGAGCTATTCCT+TGG | 0.375588 | 1_1:-44746823 | Msa0023470:CDS |
| AAAGAAACTACATCCTGATT+TGG | 0.379604 | 1_1:-44749100 | Msa0023470:CDS |
| ATCAATGGTTATTTACTCAT+AGG | 0.383801 | 1_1:+44746730 | None:intergenic |
| ACACTCAAAACATTCATATC+TGG | 0.387191 | 1_1:-44746469 | Msa0023470:three_prime_UTR |
| GATTACATCATTTGTATCAA+TGG | 0.388354 | 1_1:-44746710 | Msa0023470:three_prime_UTR |
| CCAAGATGGAGCTATTCCTT+GGG | 0.394723 | 1_1:-44746822 | Msa0023470:CDS |
| TATAGATTATGAATATTATA+CGG | 0.402465 | 1_1:+44750197 | None:intergenic |
| CGCTGATGCTTTCCAAAAGC+GGG | 0.419435 | 1_1:-44747510 | Msa0023470:CDS |
| TAGTCATTTGAATGATCAAC+AGG | 0.423045 | 1_1:+44750017 | None:intergenic |
| ACGTGCATAGCAAAGCAATA+AGG | 0.440004 | 1_1:+44746686 | None:intergenic |
| ATGAATATTATACGGTGTAA+AGG | 0.443593 | 1_1:+44750205 | None:intergenic |
| TTTGGTGCATTCAAAATCTC+AGG | 0.443830 | 1_1:-44749082 | Msa0023470:intron |
| TGAATATTATACGGTGTAAA+GGG | 0.444296 | 1_1:+44750206 | None:intergenic |
| GGAGATTGAGGTTTAAGATA+AGG | 0.453740 | 1_1:+44750236 | None:intergenic |
| CTATTCCTTGGGGCGGCAAA+TGG | 0.458555 | 1_1:-44746811 | Msa0023470:CDS |
| TGATTTGGAGGGGAAGTACA+AGG | 0.458896 | 1_1:-44749130 | Msa0023470:CDS |
| TTTATGACAAAATTTAGATT+CGG | 0.464618 | 1_1:+44750403 | None:intergenic |
| TGCAGGAGAAAATGCAAAGT+TGG | 0.478471 | 1_1:-44747544 | Msa0023470:CDS |
| TGTTCGTATAAAGTTGAAGA+AGG | 0.490091 | 1_1:+44750292 | None:intergenic |
| ACGTTGAGGAATCGAAGTTA+AGG | 0.491039 | 1_1:+44750265 | None:intergenic |
| CCCAAGGAATAGCTCCATCT+TGG | 0.492080 | 1_1:+44746822 | None:intergenic |
| CGTAGAGGGTATTGATTTGG+AGG | 0.493506 | 1_1:-44749142 | Msa0023470:CDS |
| TTATTATACTCGTGTAATTG+AGG | 0.500529 | 1_1:-44747450 | Msa0023470:CDS |
| GATACAAATGATGTAATCAA+TGG | 0.501711 | 1_1:+44746715 | None:intergenic |
| TTGCTTTGCTATGCACGTAT+CGG | 0.503707 | 1_1:-44746681 | Msa0023470:three_prime_UTR |
| TACGGTGTAAAGGGTGGTGA+TGG | 0.506836 | 1_1:+44750215 | None:intergenic |
| GTGGGTTGGAAATTCTCAGC+AGG | 0.509629 | 1_1:+44750110 | None:intergenic |
| AGAATTTCCAACCCACATGC+TGG | 0.512534 | 1_1:-44750103 | Msa0023470:CDS |
| CTTGAATGAGTGTTCATGCT+AGG | 0.517779 | 1_1:+44746618 | None:intergenic |
| AAGTTGAAGAAGGTTGAAAG+AGG | 0.529141 | 1_1:+44750302 | None:intergenic |
| CCTGCAGATTATGGAAATCA+GGG | 0.533197 | 1_1:-44747752 | Msa0023470:intron |
| AGAGTTAGTTGCTTCTTCAA+CGG | 0.538397 | 1_1:+44747726 | None:intergenic |
| AAGGGTGGTGATGGAGATTG+AGG | 0.538552 | 1_1:+44750224 | None:intergenic |
| AAGAGGAAAGGTGCTGATTG+AGG | 0.540087 | 1_1:+44750065 | None:intergenic |
| GACAATTCCAGCATGTGGGT+TGG | 0.549693 | 1_1:+44750096 | None:intergenic |
| CATGCTAGGGATGTGGCTCA+TGG | 0.552197 | 1_1:+44746632 | None:intergenic |
| AGCATGACAATTCCAGCATG+TGG | 0.570875 | 1_1:+44750091 | None:intergenic |
| ATTTGCTGATTGCAATGAAG+TGG | 0.572176 | 1_1:-44746753 | Msa0023470:CDS |
| AGGATTCATGAAATTTGGGA+GGG | 0.576368 | 1_1:+44750366 | None:intergenic |
| TTTGTCAAGAGCGATTTACA+TGG | 0.578860 | 1_1:-44748828 | Msa0023470:intron |
| ATCTACCATTTGCCGCCCCA+AGG | 0.580412 | 1_1:+44746806 | None:intergenic |
| AAGGATTCATGAAATTTGGG+AGG | 0.582665 | 1_1:+44750365 | None:intergenic |
| AGCGACACGATTGACAGAAG+AGG | 0.584298 | 1_1:+44750048 | None:intergenic |
| TCGCTGATGCTTTCCAAAAG+CGG | 0.587877 | 1_1:-44747511 | Msa0023470:CDS |
| ATGTAAATCGCTCTTGACAA+AGG | 0.590079 | 1_1:+44748830 | None:intergenic |
| AGATCCAGAATTATTAGCAG+AGG | 0.590429 | 1_1:-44748501 | Msa0023470:intron |
| GTTGGTGTAGGCTTCCAAGA+TGG | 0.591331 | 1_1:-44746836 | Msa0023470:intron |
| TGTTGCTTTGTTGCATGCAG+CGG | 0.593199 | 1_1:+44746594 | None:intergenic |
| CAAGTGTTGCAAATTTACCT+AGG | 0.597718 | 1_1:+44746527 | None:intergenic |
| GAGTGTTCATGCTAGGGATG+TGG | 0.599756 | 1_1:+44746625 | None:intergenic |
| GGAGAGGAAGTATGACGTAG+AGG | 0.600529 | 1_1:-44749157 | Msa0023470:CDS |
| CACGATTGACAGAAGAGGAA+AGG | 0.602503 | 1_1:+44750053 | None:intergenic |
| GAGAGGAAGTATGACGTAGA+GGG | 0.603503 | 1_1:-44749156 | Msa0023470:CDS |
| GTAGAGGGTATTGATTTGGA+GGG | 0.608421 | 1_1:-44749141 | Msa0023470:CDS |
| TTAGTTGAAGCTTGATGGAG+TGG | 0.608425 | 1_1:-44748549 | Msa0023470:intron |
| GTTGCAAATTTACCTAGGCG+AGG | 0.622783 | 1_1:+44746532 | None:intergenic |
| TTTGAATCAGATTCGCTCTG+AGG | 0.623474 | 1_1:-44747698 | Msa0023470:intron |
| CAAGATGGAGCTATTCCTTG+GGG | 0.624618 | 1_1:-44746821 | Msa0023470:CDS |
| TAGAGGGTATTGATTTGGAG+GGG | 0.625338 | 1_1:-44749140 | Msa0023470:CDS |
| TTGAATGAGTGTTCATGCTA+GGG | 0.625900 | 1_1:+44746619 | None:intergenic |
| ATATTATACGGTGTAAAGGG+TGG | 0.640063 | 1_1:+44750209 | None:intergenic |
| AGATAAGGTGATACACGTTG+AGG | 0.642015 | 1_1:+44750251 | None:intergenic |
| GATGGAGCTATTCCTTGGGG+CGG | 0.646333 | 1_1:-44746818 | Msa0023470:CDS |
| GCATGACAATTCCAGCATGT+GGG | 0.648381 | 1_1:+44750092 | None:intergenic |
| TGGAGGGGAAGTACAAGGAG+TGG | 0.648704 | 1_1:-44749125 | Msa0023470:CDS |
| CGGTGACAGAGTCAAAGACA+TGG | 0.652103 | 1_1:+44750423 | None:intergenic |
| ATTCTTCATTTGGGTCTCTG+CGG | 0.657385 | 1_1:-44750160 | Msa0023470:CDS |
| TGATGGAGTGGAAGTTGATG+AGG | 0.658748 | 1_1:-44748537 | Msa0023470:CDS |
| TGAAGAAGCAACTAACTCTG+AGG | 0.709047 | 1_1:-44747722 | Msa0023470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGATTATGAATATTATA+CGG | + | chr1_1:44746707-44746726 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTTAAATTAAAAC+AGG | - | chr1_1:44747722-44747741 | Msa0023470:CDS | 10.0% |
| !!! | TTTTCTTTTAAATTAAAACA+GGG | - | chr1_1:44747723-44747742 | Msa0023470:CDS | 10.0% |
| !! | CAATAATAATACAAAAATAA+AGG | + | chr1_1:44750038-44750057 | None:intergenic | 10.0% |
| !! | TTTATGACAAAATTTAGATT+CGG | + | chr1_1:44746501-44746520 | None:intergenic | 15.0% |
| !!! | AACAAAGTTTTGATTTTTAT+TGG | - | chr1_1:44746987-44747006 | Msa0023470:intron | 15.0% |
| !! | GAAGAAATTTAATCATTTAT+AGG | - | chr1_1:44747072-44747091 | Msa0023470:intron | 15.0% |
| !! | TTAATCATTTATAGGAAATT+TGG | - | chr1_1:44747080-44747099 | Msa0023470:intron | 15.0% |
| !! | GAAATAAAAAAAAAGAAGAA+AGG | + | chr1_1:44747865-44747884 | None:intergenic | 15.0% |
| !! | TTTCTTTCTCTTAAATAAAT+TGG | - | chr1_1:44748965-44748984 | Msa0023470:intron | 15.0% |
| !!! | GTAATGTAATAATTTTCTTT+TGG | - | chr1_1:44749499-44749518 | Msa0023470:intron | 15.0% |
| !! | AATTTAGAAACAAATGATAA+TGG | - | chr1_1:44749620-44749639 | Msa0023470:intron | 15.0% |
| !! | ATTTAGAAACAAATGATAAT+GGG | - | chr1_1:44749621-44749640 | Msa0023470:intron | 15.0% |
| !!! | TATTATTATTGATGATATGT+TGG | - | chr1_1:44750047-44750066 | Msa0023470:CDS | 15.0% |
| !! | ATTAAGGATTCATGAAATTT+GGG | + | chr1_1:44746542-44746561 | None:intergenic | 20.0% |
| !! | AATTAAGGATTCATGAAATT+TGG | + | chr1_1:44746543-44746562 | None:intergenic | 20.0% |
| !! | CATTGTTGAATATGTAATTA+AGG | + | chr1_1:44746558-44746577 | None:intergenic | 20.0% |
| !! | AATTACGATTATTCTTCATT+TGG | - | chr1_1:44746731-44746750 | Msa0023470:exon | 20.0% |
| !! | ATTACGATTATTCTTCATTT+GGG | - | chr1_1:44746732-44746751 | Msa0023470:exon | 20.0% |
| !!! | TTTTATTGGTTGATGAATAA+TGG | - | chr1_1:44747001-44747020 | Msa0023470:intron | 20.0% |
| !!! | TTTATTGGTTGATGAATAAT+GGG | - | chr1_1:44747002-44747021 | Msa0023470:intron | 20.0% |
| !!! | TCCTAGGTTTTTATTTTTTT+TGG | - | chr1_1:44747120-44747139 | Msa0023470:intron | 20.0% |
| !! | TCCAAAAAAAATAAAAACCT+AGG | + | chr1_1:44747124-44747143 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTATTTTTTTTGG+AGG | - | chr1_1:44747123-44747142 | Msa0023470:intron | 20.0% |
| !!! | AATATATGGTTTTAAGTTGT+TGG | - | chr1_1:44747618-44747637 | Msa0023470:intron | 20.0% |
| !!! | ATATATGGTTTTAAGTTGTT+GGG | - | chr1_1:44747619-44747638 | Msa0023470:intron | 20.0% |
| !!! | GTAAACAAACAAATTTTGTT+AGG | + | chr1_1:44747972-44747991 | None:intergenic | 20.0% |
| !! | ATTTGTTTGTTTACTTCAAT+TGG | - | chr1_1:44747978-44747997 | Msa0023470:intron | 20.0% |
| !! | TATAAAAGTAAAGAAAGTGA+TGG | + | chr1_1:44748280-44748299 | None:intergenic | 20.0% |
| !! | TTTCACATTGTAAACAAATT+TGG | + | chr1_1:44748439-44748458 | None:intergenic | 20.0% |
| !!! | ATATTTTTTATATCTGTCTC+TGG | + | chr1_1:44748653-44748672 | None:intergenic | 20.0% |
| !! | AATTTAATTGCTAAGGATAA+TGG | - | chr1_1:44749022-44749041 | Msa0023470:intron | 20.0% |
| !!! | GGAAATTTTAATAACAGAAA+AGG | + | chr1_1:44749131-44749150 | None:intergenic | 20.0% |
| !!! | ATTTTTGATTCTACAAAGTA+TGG | + | chr1_1:44749538-44749557 | None:intergenic | 20.0% |
| !! | TACAAAAATAAAGGAATTTG+AGG | + | chr1_1:44750029-44750048 | None:intergenic | 20.0% |
| ! | TTTGCAATTTATCTACATTC+AGG | + | chr1_1:44746453-44746472 | None:intergenic | 25.0% |
| ! | TGAATATTATACGGTGTAAA+GGG | + | chr1_1:44746698-44746717 | None:intergenic | 25.0% |
| ! | ATGAATATTATACGGTGTAA+AGG | + | chr1_1:44746699-44746718 | None:intergenic | 25.0% |
| !! | AATGACTACTTCGATATTTT+TGG | - | chr1_1:44746899-44746918 | Msa0023470:intron | 25.0% |
| ! | GTCTGTTTATATTTAATCCT+AGG | - | chr1_1:44747104-44747123 | Msa0023470:intron | 25.0% |
| !!! | TTTTGGAGGAATTTAATACT+AGG | - | chr1_1:44747137-44747156 | Msa0023470:intron | 25.0% |
| ! | ATAGTGAGTGGTTAAATATA+GGG | + | chr1_1:44747346-44747365 | None:intergenic | 25.0% |
| ! | GTCCTTAACATTATTAATGA+AGG | - | chr1_1:44747406-44747425 | Msa0023470:intron | 25.0% |
| ! | GTCCTTCATTAATAATGTTA+AGG | + | chr1_1:44747411-44747430 | None:intergenic | 25.0% |
| ! | TTGAAATGCTTATAATCTCA+AGG | - | chr1_1:44747466-44747485 | Msa0023470:CDS | 25.0% |
| !! | TTTTAAATTAAAACAGGGAG+AGG | - | chr1_1:44747728-44747747 | Msa0023470:CDS | 25.0% |
| !! | TACTCTTTGTTTCAAAGATT+TGG | - | chr1_1:44747917-44747936 | Msa0023470:intron | 25.0% |
| ! | TTTGTTTACTTCAATTGGTT+AGG | - | chr1_1:44747983-44748002 | Msa0023470:intron | 25.0% |
| ! | TGAACATATGAAAAGTTCAA+TGG | - | chr1_1:44748166-44748185 | Msa0023470:intron | 25.0% |
| ! | AATGAAAAATTTCCTCATCA+CGG | + | chr1_1:44748214-44748233 | None:intergenic | 25.0% |
| !! | TGATGAGGAAATTTTTCATT+TGG | - | chr1_1:44748214-44748233 | Msa0023470:intron | 25.0% |
| ! | AAGCTTCAACTAACAAATTA+TGG | + | chr1_1:44748345-44748364 | None:intergenic | 25.0% |
| !! | ACTGAACTGATTTAAAACAA+GGG | + | chr1_1:44748575-44748594 | None:intergenic | 25.0% |
| !! | TACTGAACTGATTTAAAACA+AGG | + | chr1_1:44748576-44748595 | None:intergenic | 25.0% |
| ! | GTTACTGCAATTGATTATAT+TGG | - | chr1_1:44748717-44748736 | Msa0023470:intron | 25.0% |
| !!! | AGCATGTTTTTAAATGGAAA+AGG | + | chr1_1:44748780-44748799 | None:intergenic | 25.0% |
| !!! | TGAGAAAGCATGTTTTTAAA+TGG | + | chr1_1:44748786-44748805 | None:intergenic | 25.0% |
| ! | TTTCGATTGAACATAAACAT+TGG | + | chr1_1:44748876-44748895 | None:intergenic | 25.0% |
| !!! | GATTTTGATGAAGTGAAAAA+AGG | + | chr1_1:44748933-44748952 | None:intergenic | 25.0% |
| ! | GAGAAAGAAAAATAAAAGCT+GGG | + | chr1_1:44748955-44748974 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAAATAAAAGC+TGG | + | chr1_1:44748956-44748975 | None:intergenic | 25.0% |
| ! | TTAAAATTTCCTGCAGATTA+TGG | - | chr1_1:44749140-44749159 | Msa0023470:CDS | 25.0% |
| ! | CTTGAAAATTCTATTTCGTA+AGG | - | chr1_1:44749230-44749249 | Msa0023470:intron | 25.0% |
| ! | TTATTATACTCGTGTAATTG+AGG | - | chr1_1:44749451-44749470 | Msa0023470:intron | 25.0% |
| ! | CCAATTGCATAAAAATATGT+AGG | + | chr1_1:44749670-44749689 | None:intergenic | 25.0% |
| !!! | CCTACATATTTTTATGCAAT+TGG | - | chr1_1:44749667-44749686 | Msa0023470:intron | 25.0% |
| ! | TAATATCTCTGTAAAATGTG+TGG | - | chr1_1:44749714-44749733 | Msa0023470:intron | 25.0% |
| ! | AATATCTCTGTAAAATGTGT+GGG | - | chr1_1:44749715-44749734 | Msa0023470:intron | 25.0% |
| ! | ATTGTTAATCATCATTTCTC+AGG | - | chr1_1:44749835-44749854 | Msa0023470:intron | 25.0% |
| !!! | TACATTTTATTTTGAAAGCC+TGG | + | chr1_1:44749899-44749918 | None:intergenic | 25.0% |
| ! | ATCAATGGTTATTTACTCAT+AGG | + | chr1_1:44750174-44750193 | None:intergenic | 25.0% |
| ! | GATACAAATGATGTAATCAA+TGG | + | chr1_1:44750189-44750208 | None:intergenic | 25.0% |
| ! | GATTACATCATTTGTATCAA+TGG | - | chr1_1:44750191-44750210 | Msa0023470:CDS | 25.0% |
| TGTTCGTATAAAGTTGAAGA+AGG | + | chr1_1:44746612-44746631 | None:intergenic | 30.0% | |
| TAGTCATTTGAATGATCAAC+AGG | + | chr1_1:44746887-44746906 | None:intergenic | 30.0% | |
| !!! | GGATTTTGTTTTTGTTGTTC+TGG | - | chr1_1:44746940-44746959 | Msa0023470:intron | 30.0% |
| TACGTTCCAATATTTCAAGA+AGG | - | chr1_1:44747290-44747309 | Msa0023470:intron | 30.0% | |
| TCGACAATTTAATAGAGTCA+AGG | + | chr1_1:44747317-44747336 | None:intergenic | 30.0% | |
| GATAGTGAGTGGTTAAATAT+AGG | + | chr1_1:44747347-44747366 | None:intergenic | 30.0% | |
| TTTGTAGGACTATCTCAAAT+TGG | + | chr1_1:44747493-44747512 | None:intergenic | 30.0% | |
| ! | AAATTCGTCCTTGATTTTGT+AGG | + | chr1_1:44747508-44747527 | None:intergenic | 30.0% |
| TACAAAATCAAGGACGAATT+TGG | - | chr1_1:44747507-44747526 | Msa0023470:CDS | 30.0% | |
| ATATATTGAAAGTCCAGCAA+TGG | + | chr1_1:44747605-44747624 | None:intergenic | 30.0% | |
| ATTGCTGGACTTTCAATATA+TGG | - | chr1_1:44747604-44747623 | Msa0023470:intron | 30.0% | |
| AAAGAAACTACATCCTGATT+TGG | - | chr1_1:44747801-44747820 | Msa0023470:intron | 30.0% | |
| AGAGATAATGACAAAGACAT+CGG | + | chr1_1:44747894-44747913 | None:intergenic | 30.0% | |
| TGCATCATCAATTTGAATCT+TGG | + | chr1_1:44748115-44748134 | None:intergenic | 30.0% | |
| TAAATTAAATGTGTCGCAAC+AGG | - | chr1_1:44748250-44748269 | Msa0023470:intron | 30.0% | |
| ! | ATTTGTTAGTTGAAGCTTGA+TGG | - | chr1_1:44748347-44748366 | Msa0023470:intron | 30.0% |
| TTATATCCATACAATTGCGA+TGG | - | chr1_1:44748690-44748709 | Msa0023470:intron | 30.0% | |
| ATGTTCAATCGAAATGAAAG+TGG | - | chr1_1:44748882-44748901 | Msa0023470:CDS | 30.0% | |
| !! | ACTCTGGAATTTAATTGCTA+AGG | - | chr1_1:44749015-44749034 | Msa0023470:intron | 30.0% |
| ATAACAGAAAAGGATTAGAG+TGG | + | chr1_1:44749121-44749140 | None:intergenic | 30.0% | |
| ! | TTGTAAAGAAGCTTTGATAC+AGG | - | chr1_1:44749477-44749496 | Msa0023470:intron | 30.0% |
| ATTCTACAAAGTATGGTGTA+AGG | + | chr1_1:44749531-44749550 | None:intergenic | 30.0% | |
| TCGAAAAGAATTGAAGCTTA+AGG | - | chr1_1:44749565-44749584 | Msa0023470:intron | 30.0% | |
| !! | AGAAACAAATGATAATGGGA+TGG | - | chr1_1:44749625-44749644 | Msa0023470:intron | 30.0% |
| AATGTGTGGGATAAAATGTT+TGG | - | chr1_1:44749728-44749747 | Msa0023470:intron | 30.0% | |
| AAGACAGTTCACAAAGTTAT+TGG | + | chr1_1:44749755-44749774 | None:intergenic | 30.0% | |
| !! | TATATAAGTAGAAGCATCAG+TGG | + | chr1_1:44749934-44749953 | None:intergenic | 30.0% |
| GATTCGAAATTCAAAAGTAG+TGG | + | chr1_1:44749973-44749992 | None:intergenic | 30.0% | |
| ! | TATTGATGATATGTTGGTGT+AGG | - | chr1_1:44750053-44750072 | Msa0023470:CDS | 30.0% |
| ! | TTGATCCTACATGTGTTTTT+CGG | - | chr1_1:44750394-44750413 | Msa0023470:five_prime_UTR | 30.0% |
| ACACTCAAAACATTCATATC+TGG | - | chr1_1:44750432-44750451 | Msa0023470:five_prime_UTR | 30.0% | |
| AGGATTCATGAAATTTGGGA+GGG | + | chr1_1:44746538-44746557 | None:intergenic | 35.0% | |
| AAGGATTCATGAAATTTGGG+AGG | + | chr1_1:44746539-44746558 | None:intergenic | 35.0% | |
| AAGTTGAAGAAGGTTGAAAG+AGG | + | chr1_1:44746602-44746621 | None:intergenic | 35.0% | |
| ! | GGAGATTGAGGTTTAAGATA+AGG | + | chr1_1:44746668-44746687 | None:intergenic | 35.0% |
| ATATTATACGGTGTAAAGGG+TGG | + | chr1_1:44746695-44746714 | None:intergenic | 35.0% | |
| TTGGATTGTAAGTTTCTGTC+TGG | - | chr1_1:44746918-44746937 | Msa0023470:intron | 35.0% | |
| TGGATTGTAAGTTTCTGTCT+GGG | - | chr1_1:44746919-44746938 | Msa0023470:intron | 35.0% | |
| CAAGGACCTTCTTGAAATAT+TGG | + | chr1_1:44747299-44747318 | None:intergenic | 35.0% | |
| !! | GAGACTTAATTGATAGTGAG+TGG | + | chr1_1:44747358-44747377 | None:intergenic | 35.0% |
| ACTACAATTTGACAGAGTCA+GGG | - | chr1_1:44747438-44747457 | Msa0023470:intron | 35.0% | |
| GAGATAGTCCTACAAAATCA+AGG | - | chr1_1:44747497-44747516 | Msa0023470:CDS | 35.0% | |
| AAAATCAAGGACGAATTTGG+TGG | - | chr1_1:44747510-44747529 | Msa0023470:CDS | 35.0% | |
| !!! | ATGGTTTTAAGTTGTTGGGA+TGG | - | chr1_1:44747623-44747642 | Msa0023470:intron | 35.0% |
| ! | GATTTTGAATGCACCAAATC+AGG | + | chr1_1:44747817-44747836 | None:intergenic | 35.0% |
| ! | TTTGGTGCATTCAAAATCTC+AGG | - | chr1_1:44747819-44747838 | Msa0023470:intron | 35.0% |
| AATCTCAGGTTTGTCTTCTT+AGG | - | chr1_1:44747833-44747852 | Msa0023470:intron | 35.0% | |
| ATCTCAGGTTTGTCTTCTTA+GGG | - | chr1_1:44747834-44747853 | Msa0023470:intron | 35.0% | |
| GAGATAATGACAAAGACATC+GGG | + | chr1_1:44747893-44747912 | None:intergenic | 35.0% | |
| ATGTAAATCGCTCTTGACAA+AGG | + | chr1_1:44748074-44748093 | None:intergenic | 35.0% | |
| TTTGTCAAGAGCGATTTACA+TGG | - | chr1_1:44748073-44748092 | Msa0023470:intron | 35.0% | |
| AATTATGGCGCAACATTACT+TGG | + | chr1_1:44748330-44748349 | None:intergenic | 35.0% | |
| AGATCCAGAATTATTAGCAG+AGG | - | chr1_1:44748400-44748419 | Msa0023470:intron | 35.0% | |
| GTTACCTCTGCTAATAATTC+TGG | + | chr1_1:44748407-44748426 | None:intergenic | 35.0% | |
| ! | CAAGAACAATCACAGTTTTC+TGG | - | chr1_1:44748499-44748518 | Msa0023470:intron | 35.0% |
| CAAAATGTCTTGAGATTTGC+TGG | - | chr1_1:44748536-44748555 | Msa0023470:CDS | 35.0% | |
| TCAGTAGTTTACCAAAATCC+AGG | - | chr1_1:44748590-44748609 | Msa0023470:intron | 35.0% | |
| CAGTAGTTTACCAAAATCCA+GGG | - | chr1_1:44748591-44748610 | Msa0023470:intron | 35.0% | |
| ! | CTATTTTATGTTCGGGCAAA+AGG | + | chr1_1:44748994-44749013 | None:intergenic | 35.0% |
| ! | CTTTTGCCCGAACATAAAAT+AGG | - | chr1_1:44748992-44749011 | Msa0023470:intron | 35.0% |
| ! | CAGAGTCCTATTTTATGTTC+GGG | + | chr1_1:44749001-44749020 | None:intergenic | 35.0% |
| ! | CCAGAGTCCTATTTTATGTT+CGG | + | chr1_1:44749002-44749021 | None:intergenic | 35.0% |
| GTATTTCACTCTTCTACACA+AGG | - | chr1_1:44749083-44749102 | Msa0023470:CDS | 35.0% | |
| AGAGTTAGTTGCTTCTTCAA+CGG | + | chr1_1:44749178-44749197 | None:intergenic | 35.0% | |
| !! | GTGAACTGTCTTTTGCTTTT+TGG | - | chr1_1:44749763-44749782 | Msa0023470:intron | 35.0% |
| !!! | AACTGTCTTTTGCTTTTTGG+TGG | - | chr1_1:44749766-44749785 | Msa0023470:intron | 35.0% |
| ! | ATTTGCTGATTGCAATGAAG+TGG | - | chr1_1:44750148-44750167 | Msa0023470:CDS | 35.0% |
| TTGAATGAGTGTTCATGCTA+GGG | + | chr1_1:44750285-44750304 | None:intergenic | 35.0% | |
| ! | CAAGTGTTGCAAATTTACCT+AGG | + | chr1_1:44750377-44750396 | None:intergenic | 35.0% |
| GAAGAAGGTTGAAAGAGGTT+TGG | + | chr1_1:44746597-44746616 | None:intergenic | 40.0% | |
| ACGTTGAGGAATCGAAGTTA+AGG | + | chr1_1:44746639-44746658 | None:intergenic | 40.0% | |
| AGATAAGGTGATACACGTTG+AGG | + | chr1_1:44746653-44746672 | None:intergenic | 40.0% | |
| ATTCTTCATTTGGGTCTCTG+CGG | - | chr1_1:44746741-44746760 | Msa0023470:CDS | 40.0% | |
| !!! | TGTTTTTGTTGTTCTGGCTC+TGG | - | chr1_1:44746946-44746965 | Msa0023470:intron | 40.0% |
| !!! | GTTTTTGTTGTTCTGGCTCT+GGG | - | chr1_1:44746947-44746966 | Msa0023470:intron | 40.0% |
| GACTACAATTTGACAGAGTC+AGG | - | chr1_1:44747437-44747456 | Msa0023470:intron | 40.0% | |
| !!! | GTTTTAAGTTGTTGGGATGG+AGG | - | chr1_1:44747626-44747645 | Msa0023470:intron | 40.0% |
| !! | TGACGTAGAGGGTATTGATT+TGG | - | chr1_1:44747756-44747775 | Msa0023470:intron | 40.0% |
| !! | GTAGAGGGTATTGATTTGGA+GGG | - | chr1_1:44747760-44747779 | Msa0023470:intron | 40.0% |
| !! | TAGAGGGTATTGATTTGGAG+GGG | - | chr1_1:44747761-44747780 | Msa0023470:intron | 40.0% |
| TCTCAGGTTTGTCTTCTTAG+GGG | - | chr1_1:44747835-44747854 | Msa0023470:intron | 40.0% | |
| TTAGTTGAAGCTTGATGGAG+TGG | - | chr1_1:44748352-44748371 | Msa0023470:intron | 40.0% | |
| ACAAAGCCATCGCAATTGTA+TGG | + | chr1_1:44748699-44748718 | None:intergenic | 40.0% | |
| GAAAGTGGCATTTCTGTTCT+AGG | - | chr1_1:44748897-44748916 | Msa0023470:CDS | 40.0% | |
| CCGAACATAAAATAGGACTC+TGG | - | chr1_1:44748999-44749018 | Msa0023470:intron | 40.0% | |
| ACAGAAAAGGATTAGAGTGG+AGG | + | chr1_1:44749118-44749137 | None:intergenic | 40.0% | |
| TCCTGCAGATTATGGAAATC+AGG | - | chr1_1:44749148-44749167 | Msa0023470:CDS | 40.0% | |
| CCTGCAGATTATGGAAATCA+GGG | - | chr1_1:44749149-44749168 | Msa0023470:CDS | 40.0% | |
| TGAAGAAGCAACTAACTCTG+AGG | - | chr1_1:44749179-44749198 | Msa0023470:intron | 40.0% | |
| TTTGAATCAGATTCGCTCTG+AGG | - | chr1_1:44749203-44749222 | Msa0023470:intron | 40.0% | |
| GCATCTGGATGAACATTCAA+AGG | + | chr1_1:44749340-44749359 | None:intergenic | 40.0% | |
| TTGAATGTTCATCCAGATGC+AGG | - | chr1_1:44749340-44749359 | Msa0023470:intron | 40.0% | |
| ! | TTTGCATTTTCTCCTGCATC+TGG | + | chr1_1:44749355-44749374 | None:intergenic | 40.0% |
| TGCAGGAGAAAATGCAAAGT+TGG | - | chr1_1:44749357-44749376 | Msa0023470:intron | 40.0% | |
| ! | CGTTGCTGTTATGTTTGTTC+TGG | - | chr1_1:44749862-44749881 | Msa0023470:intron | 40.0% |
| !!! | GTTCTGGCTTTTATGAATCC+AGG | - | chr1_1:44749878-44749897 | Msa0023470:intron | 40.0% |
| TTGAGGCACAATTACAAGCA+GGG | + | chr1_1:44750012-44750031 | None:intergenic | 40.0% | |
| ! | TTTGAGGCACAATTACAAGC+AGG | + | chr1_1:44750013-44750032 | None:intergenic | 40.0% |
| ACGTGCATAGCAAAGCAATA+AGG | + | chr1_1:44750218-44750237 | None:intergenic | 40.0% | |
| ! | TTGCTTTGCTATGCACGTAT+CGG | - | chr1_1:44750220-44750239 | Msa0023470:CDS | 40.0% |
| CTTGAATGAGTGTTCATGCT+AGG | + | chr1_1:44750286-44750305 | None:intergenic | 40.0% | |
| AGAATTTCCAACCCACATGC+TGG | - | chr1_1:44746798-44746817 | Msa0023470:CDS | 45.0% | |
| GCATGACAATTCCAGCATGT+GGG | + | chr1_1:44746812-44746831 | None:intergenic | 45.0% | |
| AGCATGACAATTCCAGCATG+TGG | + | chr1_1:44746813-44746832 | None:intergenic | 45.0% | |
| !! | AAGAGGAAAGGTGCTGATTG+AGG | + | chr1_1:44746839-44746858 | None:intergenic | 45.0% |
| CACGATTGACAGAAGAGGAA+AGG | + | chr1_1:44746851-44746870 | None:intergenic | 45.0% | |
| GTGTTTCATCAAGCTGCAAG+AGG | - | chr1_1:44747212-44747231 | Msa0023470:intron | 45.0% | |
| !! | GAGAGCGCTCTACAAAGTTA+AGG | + | chr1_1:44747267-44747286 | None:intergenic | 45.0% |
| ! | GAGAGGAAGTATGACGTAGA+GGG | - | chr1_1:44747745-44747764 | Msa0023470:CDS | 45.0% |
| !! | CGTAGAGGGTATTGATTTGG+AGG | - | chr1_1:44747759-44747778 | Msa0023470:intron | 45.0% |
| ! | TGATTTGGAGGGGAAGTACA+AGG | - | chr1_1:44747771-44747790 | Msa0023470:intron | 45.0% |
| TATACCTGTTCTCCGTGATG+AGG | - | chr1_1:44748199-44748218 | Msa0023470:intron | 45.0% | |
| ATTTCCTCATCACGGAGAAC+AGG | + | chr1_1:44748206-44748225 | None:intergenic | 45.0% | |
| !! | TGATGGAGTGGAAGTTGATG+AGG | - | chr1_1:44748364-44748383 | Msa0023470:intron | 45.0% |
| ! | CGACTGTTTACCCTGGATTT+TGG | + | chr1_1:44748604-44748623 | None:intergenic | 45.0% |
| CTTTACACGACTGTTTACCC+TGG | + | chr1_1:44748611-44748630 | None:intergenic | 45.0% | |
| CCCTGATTTCCATAATCTGC+AGG | + | chr1_1:44749152-44749171 | None:intergenic | 45.0% | |
| !!! | CTTTTGGAAAGCATCAGCGA+AGG | + | chr1_1:44749390-44749409 | None:intergenic | 45.0% |
| TCGCTGATGCTTTCCAAAAG+CGG | - | chr1_1:44749390-44749409 | Msa0023470:intron | 45.0% | |
| ! | CTTCTTCAAAGTCCCGCTTT+TGG | + | chr1_1:44749406-44749425 | None:intergenic | 45.0% |
| TCCAAGATGGAGCTATTCCT+TGG | - | chr1_1:44750078-44750097 | Msa0023470:CDS | 45.0% | |
| CCAAGATGGAGCTATTCCTT+GGG | - | chr1_1:44750079-44750098 | Msa0023470:CDS | 45.0% | |
| CAAGATGGAGCTATTCCTTG+GGG | - | chr1_1:44750080-44750099 | Msa0023470:CDS | 45.0% | |
| !! | TGTTGCTTTGTTGCATGCAG+CGG | + | chr1_1:44750310-44750329 | None:intergenic | 45.0% |
| ! | TGTACGTATTTTCCTCGCCT+AGG | - | chr1_1:44750357-44750376 | Msa0023470:five_prime_UTR | 45.0% |
| GTTGCAAATTTACCTAGGCG+AGG | + | chr1_1:44750372-44750391 | None:intergenic | 45.0% | |
| CGGTGACAGAGTCAAAGACA+TGG | + | chr1_1:44746481-44746500 | None:intergenic | 50.0% | |
| !! | AAGGGTGGTGATGGAGATTG+AGG | + | chr1_1:44746680-44746699 | None:intergenic | 50.0% |
| TACGGTGTAAAGGGTGGTGA+TGG | + | chr1_1:44746689-44746708 | None:intergenic | 50.0% | |
| !! | GTGGGTTGGAAATTCTCAGC+AGG | + | chr1_1:44746794-44746813 | None:intergenic | 50.0% |
| GACAATTCCAGCATGTGGGT+TGG | + | chr1_1:44746808-44746827 | None:intergenic | 50.0% | |
| AGCGACACGATTGACAGAAG+AGG | + | chr1_1:44746856-44746875 | None:intergenic | 50.0% | |
| !! | TTTGTTGTTCTGGCTCTGGG+TGG | - | chr1_1:44746950-44746969 | Msa0023470:intron | 50.0% |
| !! | TTGTTGTTCTGGCTCTGGGT+GGG | - | chr1_1:44746951-44746970 | Msa0023470:intron | 50.0% |
| ! | GGAGAGGAAGTATGACGTAG+AGG | - | chr1_1:44747744-44747763 | Msa0023470:CDS | 50.0% |
| CGCTGATGCTTTCCAAAAGC+GGG | - | chr1_1:44749391-44749410 | Msa0023470:intron | 50.0% | |
| GTTGGTGTAGGCTTCCAAGA+TGG | - | chr1_1:44750065-44750084 | Msa0023470:CDS | 50.0% | |
| CCCAAGGAATAGCTCCATCT+TGG | + | chr1_1:44750082-44750101 | None:intergenic | 50.0% | |
| GAGTGTTCATGCTAGGGATG+TGG | + | chr1_1:44750279-44750298 | None:intergenic | 50.0% | |
| CCTCGCCGAAAAACACATGT+AGG | + | chr1_1:44750402-44750421 | None:intergenic | 50.0% | |
| !! | CCTACATGTGTTTTTCGGCG+AGG | - | chr1_1:44750399-44750418 | Msa0023470:five_prime_UTR | 50.0% |
| CCAGCAATGGAACTCGAGTC+AGG | + | chr1_1:44747592-44747611 | None:intergenic | 55.0% | |
| ! | CCTGACTCGAGTTCCATTGC+TGG | - | chr1_1:44747589-44747608 | Msa0023470:intron | 55.0% |
| ! | TGGAGGGGAAGTACAAGGAG+TGG | - | chr1_1:44747776-44747795 | Msa0023470:intron | 55.0% |
| GATGGAGCTATTCCTTGGGG+CGG | - | chr1_1:44750083-44750102 | Msa0023470:CDS | 55.0% | |
| CTATTCCTTGGGGCGGCAAA+TGG | - | chr1_1:44750090-44750109 | Msa0023470:CDS | 55.0% | |
| ATCTACCATTTGCCGCCCCA+AGG | + | chr1_1:44750098-44750117 | None:intergenic | 55.0% | |
| CATGCTAGGGATGTGGCTCA+TGG | + | chr1_1:44750272-44750291 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 44746442 | 44750481 | 44746442 | ID=Msa0023470;Name=Msa0023470 |
| chr1_1 | mRNA | 44746442 | 44750481 | 44746442 | ID=Msa0023470-mRNA-1;Parent=Msa0023470;Name=Msa0023470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=133|0.83|0.85|1|1|1|7|296|301 |
| chr1_1 | exon | 44746442 | 44746848 | 44746442 | ID=Msa0023470-mRNA-1:exon:12850;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44747445 | 44747567 | 44747445 | ID=Msa0023470-mRNA-1:exon:12849;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44747699 | 44747767 | 44747699 | ID=Msa0023470-mRNA-1:exon:12848;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44748502 | 44748567 | 44748502 | ID=Msa0023470-mRNA-1:exon:12847;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44748829 | 44748918 | 44748829 | ID=Msa0023470-mRNA-1:exon:12846;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44749083 | 44749179 | 44749083 | ID=Msa0023470-mRNA-1:exon:12845;Parent=Msa0023470-mRNA-1 |
| chr1_1 | exon | 44749999 | 44750481 | 44749999 | ID=Msa0023470-mRNA-1:exon:12844;Parent=Msa0023470-mRNA-1 |
| chr1_1 | five_prime_UTR | 44750349 | 44750481 | 44750349 | ID=Msa0023470-mRNA-1:five_prime_utr;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44749999 | 44750348 | 44749999 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44749083 | 44749179 | 44749083 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44748829 | 44748918 | 44748829 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44748502 | 44748567 | 44748502 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44747699 | 44747767 | 44747699 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44747445 | 44747567 | 44747445 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | CDS | 44746738 | 44746848 | 44746738 | ID=Msa0023470-mRNA-1:cds;Parent=Msa0023470-mRNA-1 |
| chr1_1 | three_prime_UTR | 44746442 | 44746737 | 44746442 | ID=Msa0023470-mRNA-1:three_prime_utr;Parent=Msa0023470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
