AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092990 MtrunA17_Chr7g0271781 96.682 211 7 0 1 211 5 215 9.94e-152 419
Msa0092990 MtrunA17_Chr7g0271791 80.220 182 35 1 22 202 1 182 2.93e-105 301
Msa0092990 MtrunA17_Chr1g0192771 74.667 150 38 0 1 150 3 152 3.27e-80 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092990 AT1G56423.2 66.010 203 69 0 1 203 1 203 9.58e-98 285
Msa0092990 AT1G56423.1 66.010 203 69 0 1 203 1 203 1.09e-97 285

Find 77 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGTTTGTTGTTAATAAT+TGG 0.109210 1_2:-75813680 Msa0092990:five_prime_UTR
ATTATTAAATTGCTTTGATA+TGG 0.171309 1_2:-75812788 Msa0092990:CDS
TAATGTAAACTTCCCACTTT+TGG 0.220946 1_2:+75812807 None:intergenic
AAATGCACCACAATTGAAAA+TGG 0.277979 1_2:+75813814 None:intergenic
TGTGATGCGGTTGGCCTTAC+GGG 0.286048 1_2:+75812570 None:intergenic
CCTCTAGAGCTGTCATAAAT+AGG 0.294176 1_2:+75812222 None:intergenic
CTCGACCATGAAAAGGGATT+TGG 0.302829 1_2:+75813840 None:intergenic
AGAGGAACTGGTACGTTGTT+TGG 0.307326 1_2:-75812472 Msa0092990:CDS
TCATCGAATGCTTCTACAAT+AGG 0.310825 1_2:+75813714 None:intergenic
GAGCAAAGGCTTGGAAGATT+TGG 0.325168 1_2:-75812424 Msa0092990:CDS
CTGTGATGCGGTTGGCCTTA+CGG 0.349279 1_2:+75812569 None:intergenic
TGAGTTTGTTGTTAATAATT+GGG 0.352915 1_2:-75813679 Msa0092990:five_prime_UTR
AACTTACGGTGTAGGTTTCA+TGG 0.367784 1_2:-75812449 Msa0092990:CDS
TTATTAAATTGCTTTGATAT+GGG 0.378126 1_2:-75812787 Msa0092990:CDS
GGAAGATTTGGTTATCTTGT+TGG 0.387002 1_2:-75812412 Msa0092990:CDS
TTATCTTGTTGGAAGTCAAT+TGG 0.396840 1_2:-75812401 Msa0092990:CDS
TTGGAAGTCAATTGGGAAGT+TGG 0.398362 1_2:-75812393 Msa0092990:CDS
AGTTGGATTGGAAGTAGAAT+AGG 0.408974 1_2:-75812376 Msa0092990:CDS
TCTTGTTGATGCTGCTTCAC+AGG 0.412869 1_2:-75812659 Msa0092990:CDS
AATTGCTTTGATATGGGCTC+AGG 0.437174 1_2:-75812781 Msa0092990:CDS
GTGCATTTCGTGTTGCAGTA+TGG 0.438736 1_2:-75812325 Msa0092990:CDS
TATCTTGTTGGAAGTCAATT+GGG 0.442064 1_2:-75812400 Msa0092990:CDS
GAGGGATTCCTCAGAGGAAC+TGG 0.444285 1_2:-75812484 Msa0092990:CDS
GGTACGTTGTTTGGAACTTA+CGG 0.445217 1_2:-75812463 Msa0092990:CDS
TATTCATAATCTACAAAGAA+TGG 0.445916 1_2:+75812197 None:intergenic
AGTCAATTGGGAAGTTGGAT+TGG 0.450366 1_2:-75812388 Msa0092990:CDS
ATTATGAATATATCTATTAA+CGG 0.452424 1_2:-75812184 Msa0092990:three_prime_UTR
CATCGAATGCTTCTACAATA+GGG 0.454519 1_2:+75813715 None:intergenic
TGTCATAAATAGGAATTTCA+TGG 0.455133 1_2:+75812232 None:intergenic
ATGGACTCTCGACCATGAAA+AGG 0.458378 1_2:+75813833 None:intergenic
GTCCCATCCGGAAGAGATGA+TGG 0.461346 1_2:+75812543 None:intergenic
ATGGTATATGATGTGGCTAA+TGG 0.468429 1_2:-75812349 Msa0092990:CDS
AAGAATCCCTCTCACGAGAA+AGG 0.480196 1_2:+75813769 None:intergenic
TTTGAAGCTGTTTACTATGG+TGG 0.481190 1_2:-75812517 Msa0092990:CDS
GTTTCTTCCATTCCATGCCA+TGG 0.486159 1_2:-75813639 Msa0092990:exon
CAATGATGGCAGATACAGAT+AGG 0.486572 1_2:+75813588 None:intergenic
AGAATCCCTCTCACGAGAAA+GGG 0.494223 1_2:+75813770 None:intergenic
GAGAACGCGTCATCCAAAAG+TGG 0.497930 1_2:-75812820 Msa0092990:CDS
GTTGGATTGGAAGTAGAATA+GGG 0.502946 1_2:-75812375 Msa0092990:CDS
ACAGGTCCCATCATCTCTTC+CGG 0.504313 1_2:-75812550 Msa0092990:CDS
CTATCTCCCTTTCTCGTGAG+AGG 0.508533 1_2:-75813776 Msa0092990:five_prime_UTR
ATCATTGTTCTTAGCATCAC+AGG 0.509850 1_2:-75813572 Msa0092990:intron
CTTGTTGATGCTGCTTCACA+GGG 0.511056 1_2:-75812658 Msa0092990:CDS
TATCTCCCTTTCTCGTGAGA+GGG 0.512986 1_2:-75813775 Msa0092990:five_prime_UTR
CAGCATCAACAAGAGCAGAT+TGG 0.514551 1_2:+75812668 None:intergenic
GAATGGAAGAAACAGTTAAA+CGG 0.515918 1_2:+75813649 None:intergenic
CCTATTTATGACAGCTCTAG+AGG 0.524126 1_2:-75812222 Msa0092990:three_prime_UTR
TGGACTCTCGACCATGAAAA+GGG 0.525887 1_2:+75813834 None:intergenic
TTGTTTGGAACTTACGGTGT+AGG 0.526991 1_2:-75812457 Msa0092990:CDS
TGAAAATCCATGGCATGGAA+TGG 0.527417 1_2:+75813632 None:intergenic
CGTAAGGCCAACCGCATCAC+AGG 0.530423 1_2:-75812568 Msa0092990:CDS
ACTTACGGTGTAGGTTTCAT+GGG 0.535716 1_2:-75812448 Msa0092990:CDS
TCCCATCATCTCTTCCGGAT+GGG 0.537093 1_2:-75812545 Msa0092990:CDS
GGCGAAATTGGCTACCCGTA+AGG 0.540905 1_2:-75812584 Msa0092990:CDS
GGCTCAGGAACGCTAGCATG+TGG 0.544815 1_2:-75812766 Msa0092990:CDS
TAAATAGGAATTTCATGGAA+AGG 0.552173 1_2:+75812237 None:intergenic
GTCCCATCATCTCTTCCGGA+TGG 0.557344 1_2:-75812546 Msa0092990:CDS
TCTGAGGAATCCCTCTGTAA+AGG 0.559119 1_2:+75812492 None:intergenic
TCTTCTGAAAATCCATGGCA+TGG 0.563833 1_2:+75813627 None:intergenic
CTCAGGAACGCTAGCATGTG+GGG 0.570098 1_2:-75812764 Msa0092990:CDS
TGGAAGTAGAATAGGGCTCA+TGG 0.576358 1_2:-75812368 Msa0092990:CDS
TCTCCTCTTCTGAAAATCCA+TGG 0.583117 1_2:+75813622 None:intergenic
TATGGTGGTACCTTTACAGA+GGG 0.585211 1_2:-75812502 Msa0092990:CDS
GCTCAGGAACGCTAGCATGT+GGG 0.607284 1_2:-75812765 Msa0092990:CDS
TCCCATCCGGAAGAGATGAT+GGG 0.613844 1_2:+75812544 None:intergenic
TGTGATGCTAAGAACAATGA+TGG 0.627342 1_2:+75813574 None:intergenic
GATGGGACCTGTGATGCGGT+TGG 0.637538 1_2:+75812561 None:intergenic
AGAACGCGTCATCCAAAAGT+GGG 0.637848 1_2:-75812819 Msa0092990:CDS
AGGGCTCATGGTATATGATG+TGG 0.638967 1_2:-75812356 Msa0092990:CDS
GAAAAGGGATTTGGATTGTG+TGG 0.644574 1_2:+75813849 None:intergenic
CTATGGTGGTACCTTTACAG+AGG 0.649919 1_2:-75812503 Msa0092990:CDS
CTTACGGTGTAGGTTTCATG+GGG 0.659609 1_2:-75812447 Msa0092990:CDS
TTTACAGAGGGATTCCTCAG+AGG 0.683356 1_2:-75812490 Msa0092990:CDS
AAGGGATTTGGATTGTGTGG+CGG 0.699732 1_2:+75813852 None:intergenic
ACAACGTACCAGTTCCTCTG+AGG 0.700531 1_2:+75812476 None:intergenic
AGATGATGGGACCTGTGATG+CGG 0.719348 1_2:+75812557 None:intergenic
TTACGGTGTAGGTTTCATGG+GGG 0.787530 1_2:-75812446 Msa0092990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTATAATTAATGAAAA+TGG + chr1_2:75813033-75813052 None:intergenic 10.0%
!! ATTATGAATATATCTATTAA+CGG - chr1_2:75813735-75813754 Msa0092990:five_prime_UTR 10.0%
!! GAAATTATAATTAATGAAAA+TGG + chr1_2:75813033-75813052 None:intergenic 10.0%
!! ATTATGAATATATCTATTAA+CGG - chr1_2:75813735-75813754 Msa0092990:five_prime_UTR 10.0%
!! ATTTGAATTTATCTATCTAA+TGG + chr1_2:75812872-75812891 None:intergenic 15.0%
!! ATTATTAAATTGCTTTGATA+TGG - chr1_2:75813131-75813150 Msa0092990:intron 15.0%
!! TTATTAAATTGCTTTGATAT+GGG - chr1_2:75813132-75813151 Msa0092990:intron 15.0%
!! ATTTGAATTTATCTATCTAA+TGG + chr1_2:75812872-75812891 None:intergenic 15.0%
!! ATTATTAAATTGCTTTGATA+TGG - chr1_2:75813131-75813150 Msa0092990:intron 15.0%
!! TTATTAAATTGCTTTGATAT+GGG - chr1_2:75813132-75813151 Msa0092990:intron 15.0%
!!! ATGAGTTTGTTGTTAATAAT+TGG - chr1_2:75812239-75812258 Msa0092990:three_prime_UTR 20.0%
!!! TGAGTTTGTTGTTAATAATT+GGG - chr1_2:75812240-75812259 Msa0092990:three_prime_UTR 20.0%
!! GGTTCAAAAATAGTATTAAT+GGG + chr1_2:75812387-75812406 None:intergenic 20.0%
!! AGGTTCAAAAATAGTATTAA+TGG + chr1_2:75812388-75812407 None:intergenic 20.0%
!!! TAATTGTCTTTATAACGTTT+TGG - chr1_2:75812435-75812454 Msa0092990:CDS 20.0%
!!! AATTGTCTTTATAACGTTTT+GGG - chr1_2:75812436-75812455 Msa0092990:CDS 20.0%
!!! TTTTTTGAAAAAGTGATGTA+AGG + chr1_2:75812951-75812970 None:intergenic 20.0%
!! TATTCATAATCTACAAAGAA+TGG + chr1_2:75813725-75813744 None:intergenic 20.0%
!! TGTGAAAAGAAAAACAATAT+TGG + chr1_2:75813811-75813830 None:intergenic 20.0%
!!! TTCTTTTCACATTATATGAT+TGG - chr1_2:75813820-75813839 Msa0092990:five_prime_UTR 20.0%
!!! ATGAGTTTGTTGTTAATAAT+TGG - chr1_2:75812239-75812258 Msa0092990:three_prime_UTR 20.0%
!!! TGAGTTTGTTGTTAATAATT+GGG - chr1_2:75812240-75812259 Msa0092990:three_prime_UTR 20.0%
!! GGTTCAAAAATAGTATTAAT+GGG + chr1_2:75812387-75812406 None:intergenic 20.0%
!! AGGTTCAAAAATAGTATTAA+TGG + chr1_2:75812388-75812407 None:intergenic 20.0%
!!! TAATTGTCTTTATAACGTTT+TGG - chr1_2:75812435-75812454 Msa0092990:CDS 20.0%
!!! AATTGTCTTTATAACGTTTT+GGG - chr1_2:75812436-75812455 Msa0092990:CDS 20.0%
!!! TTTTTTGAAAAAGTGATGTA+AGG + chr1_2:75812951-75812970 None:intergenic 20.0%
!! TATTCATAATCTACAAAGAA+TGG + chr1_2:75813725-75813744 None:intergenic 20.0%
!! TGTGAAAAGAAAAACAATAT+TGG + chr1_2:75813811-75813830 None:intergenic 20.0%
!!! TTCTTTTCACATTATATGAT+TGG - chr1_2:75813820-75813839 Msa0092990:five_prime_UTR 20.0%
!!! AATTTTTGGGGTCAATAATT+TGG + chr1_2:75812527-75812546 None:intergenic 25.0%
! AAATTATTGACCCCAAAAAT+TGG - chr1_2:75812526-75812545 Msa0092990:CDS 25.0%
!! TTTTCTTTTCTATTCTAGCA+TGG - chr1_2:75812568-75812587 Msa0092990:CDS 25.0%
!!! TTTTTTGAAGCTGTTTACTA+TGG - chr1_2:75813399-75813418 Msa0092990:intron 25.0%
! TAAATAGGAATTTCATGGAA+AGG + chr1_2:75813685-75813704 None:intergenic 25.0%
! TGTCATAAATAGGAATTTCA+TGG + chr1_2:75813690-75813709 None:intergenic 25.0%
!!! AATTTTTGGGGTCAATAATT+TGG + chr1_2:75812527-75812546 None:intergenic 25.0%
! AAATTATTGACCCCAAAAAT+TGG - chr1_2:75812526-75812545 Msa0092990:CDS 25.0%
!! TTTTCTTTTCTATTCTAGCA+TGG - chr1_2:75812568-75812587 Msa0092990:CDS 25.0%
!!! TTTTTTGAAGCTGTTTACTA+TGG - chr1_2:75813399-75813418 Msa0092990:intron 25.0%
! TAAATAGGAATTTCATGGAA+AGG + chr1_2:75813685-75813704 None:intergenic 25.0%
! TGTCATAAATAGGAATTTCA+TGG + chr1_2:75813690-75813709 None:intergenic 25.0%
AAATGCACCACAATTGAAAA+TGG + chr1_2:75812108-75812127 None:intergenic 30.0%
GAATGGAAGAAACAGTTAAA+CGG + chr1_2:75812273-75812292 None:intergenic 30.0%
!!! AACGTTTTGGGTTCAATTAA+CGG - chr1_2:75812448-75812467 Msa0092990:CDS 30.0%
TCAATTAACGGCAGTAATTT+AGG - chr1_2:75812460-75812479 Msa0092990:CDS 30.0%
CAATTAACGGCAGTAATTTA+GGG - chr1_2:75812461-75812480 Msa0092990:CDS 30.0%
AATTAACGGCAGTAATTTAG+GGG - chr1_2:75812462-75812481 Msa0092990:CDS 30.0%
TGAATAAGATAAACCTGATC+AGG + chr1_2:75812494-75812513 None:intergenic 30.0%
! CTATTCTAGCATGGATTTTA+TGG - chr1_2:75812577-75812596 Msa0092990:CDS 30.0%
AATTGTTCCTTACATCAAAG+TGG - chr1_2:75812969-75812988 Msa0092990:intron 30.0%
TGGGTTCTCATATTTAACTA+TGG - chr1_2:75813004-75813023 Msa0092990:intron 30.0%
! TAATGTAAACTTCCCACTTT+TGG + chr1_2:75813115-75813134 None:intergenic 30.0%
TTATCTTGTTGGAAGTCAAT+TGG - chr1_2:75813518-75813537 Msa0092990:intron 30.0%
TATCTTGTTGGAAGTCAATT+GGG - chr1_2:75813519-75813538 Msa0092990:intron 30.0%
AAATGCACCACAATTGAAAA+TGG + chr1_2:75812108-75812127 None:intergenic 30.0%
GAATGGAAGAAACAGTTAAA+CGG + chr1_2:75812273-75812292 None:intergenic 30.0%
!!! AACGTTTTGGGTTCAATTAA+CGG - chr1_2:75812448-75812467 Msa0092990:CDS 30.0%
TCAATTAACGGCAGTAATTT+AGG - chr1_2:75812460-75812479 Msa0092990:CDS 30.0%
CAATTAACGGCAGTAATTTA+GGG - chr1_2:75812461-75812480 Msa0092990:CDS 30.0%
AATTAACGGCAGTAATTTAG+GGG - chr1_2:75812462-75812481 Msa0092990:CDS 30.0%
TGAATAAGATAAACCTGATC+AGG + chr1_2:75812494-75812513 None:intergenic 30.0%
! CTATTCTAGCATGGATTTTA+TGG - chr1_2:75812577-75812596 Msa0092990:CDS 30.0%
AATTGTTCCTTACATCAAAG+TGG - chr1_2:75812969-75812988 Msa0092990:intron 30.0%
TGGGTTCTCATATTTAACTA+TGG - chr1_2:75813004-75813023 Msa0092990:intron 30.0%
! TAATGTAAACTTCCCACTTT+TGG + chr1_2:75813115-75813134 None:intergenic 30.0%
TTATCTTGTTGGAAGTCAAT+TGG - chr1_2:75813518-75813537 Msa0092990:intron 30.0%
TATCTTGTTGGAAGTCAATT+GGG - chr1_2:75813519-75813538 Msa0092990:intron 30.0%
! ACAATCCAAATCCCTTTTCA+TGG - chr1_2:75812074-75812093 Msa0092990:three_prime_UTR 35.0%
! TTCAATTGTGGTGCATTTTC+TGG - chr1_2:75812110-75812129 Msa0092990:three_prime_UTR 35.0%
CATCGAATGCTTCTACAATA+GGG + chr1_2:75812207-75812226 None:intergenic 35.0%
TCATCGAATGCTTCTACAAT+AGG + chr1_2:75812208-75812227 None:intergenic 35.0%
! ATTTTCAGAAGAGGAGAGTT+CGG - chr1_2:75812303-75812322 Msa0092990:CDS 35.0%
TGTGATGCTAAGAACAATGA+TGG + chr1_2:75812348-75812367 None:intergenic 35.0%
ATCATTGTTCTTAGCATCAC+AGG - chr1_2:75812347-75812366 Msa0092990:CDS 35.0%
TTGAATTGAGTCTGATGTGA+AGG + chr1_2:75812408-75812427 None:intergenic 35.0%
AAGCTATCTTGAAGAGTTTG+TGG - chr1_2:75812763-75812782 Msa0092990:CDS 35.0%
!!! GCATGTTTTTCTGAAGCAAT+TGG + chr1_2:75813294-75813313 None:intergenic 35.0%
!!! CGCTTTTTTACCTTGTTTCA+GGG + chr1_2:75813316-75813335 None:intergenic 35.0%
CCTGAAACAAGGTAAAAAAG+CGG - chr1_2:75813314-75813333 Msa0092990:intron 35.0%
! TTTGAAGCTGTTTACTATGG+TGG - chr1_2:75813402-75813421 Msa0092990:intron 35.0%
! GGAAGATTTGGTTATCTTGT+TGG - chr1_2:75813507-75813526 Msa0092990:intron 35.0%
! AGTTGGATTGGAAGTAGAAT+AGG - chr1_2:75813543-75813562 Msa0092990:intron 35.0%
! GTTGGATTGGAAGTAGAATA+GGG - chr1_2:75813544-75813563 Msa0092990:intron 35.0%
ATGGTATATGATGTGGCTAA+TGG - chr1_2:75813570-75813589 Msa0092990:intron 35.0%
! ACAATCCAAATCCCTTTTCA+TGG - chr1_2:75812074-75812093 Msa0092990:three_prime_UTR 35.0%
! TTCAATTGTGGTGCATTTTC+TGG - chr1_2:75812110-75812129 Msa0092990:three_prime_UTR 35.0%
CATCGAATGCTTCTACAATA+GGG + chr1_2:75812207-75812226 None:intergenic 35.0%
TCATCGAATGCTTCTACAAT+AGG + chr1_2:75812208-75812227 None:intergenic 35.0%
! ATTTTCAGAAGAGGAGAGTT+CGG - chr1_2:75812303-75812322 Msa0092990:CDS 35.0%
TGTGATGCTAAGAACAATGA+TGG + chr1_2:75812348-75812367 None:intergenic 35.0%
ATCATTGTTCTTAGCATCAC+AGG - chr1_2:75812347-75812366 Msa0092990:CDS 35.0%
TTGAATTGAGTCTGATGTGA+AGG + chr1_2:75812408-75812427 None:intergenic 35.0%
AAGCTATCTTGAAGAGTTTG+TGG - chr1_2:75812763-75812782 Msa0092990:CDS 35.0%
!!! GCATGTTTTTCTGAAGCAAT+TGG + chr1_2:75813294-75813313 None:intergenic 35.0%
!!! CGCTTTTTTACCTTGTTTCA+GGG + chr1_2:75813316-75813335 None:intergenic 35.0%
CCTGAAACAAGGTAAAAAAG+CGG - chr1_2:75813314-75813333 Msa0092990:intron 35.0%
! TTTGAAGCTGTTTACTATGG+TGG - chr1_2:75813402-75813421 Msa0092990:intron 35.0%
! GGAAGATTTGGTTATCTTGT+TGG - chr1_2:75813507-75813526 Msa0092990:intron 35.0%
! AGTTGGATTGGAAGTAGAAT+AGG - chr1_2:75813543-75813562 Msa0092990:intron 35.0%
! GTTGGATTGGAAGTAGAATA+GGG - chr1_2:75813544-75813563 Msa0092990:intron 35.0%
ATGGTATATGATGTGGCTAA+TGG - chr1_2:75813570-75813589 Msa0092990:intron 35.0%
GAAAAGGGATTTGGATTGTG+TGG + chr1_2:75812073-75812092 None:intergenic 40.0%
! CGAGAGTCCATTTTCAATTG+TGG - chr1_2:75812098-75812117 Msa0092990:three_prime_UTR 40.0%
TGAAAATCCATGGCATGGAA+TGG + chr1_2:75812290-75812309 None:intergenic 40.0%
! TCTTCTGAAAATCCATGGCA+TGG + chr1_2:75812295-75812314 None:intergenic 40.0%
! ATGCCATGGATTTTCAGAAG+AGG - chr1_2:75812294-75812313 Msa0092990:exon 40.0%
! TCTCCTCTTCTGAAAATCCA+TGG + chr1_2:75812300-75812319 None:intergenic 40.0%
CAATGATGGCAGATACAGAT+AGG + chr1_2:75812334-75812353 None:intergenic 40.0%
TTGACCCCAAAAATTGGCAT+AGG - chr1_2:75812532-75812551 Msa0092990:CDS 40.0%
! GTCTCCTATGCCAATTTTTG+GGG + chr1_2:75812539-75812558 None:intergenic 40.0%
! CGTCTCCTATGCCAATTTTT+GGG + chr1_2:75812540-75812559 None:intergenic 40.0%
! TCGTCTCCTATGCCAATTTT+TGG + chr1_2:75812541-75812560 None:intergenic 40.0%
AGGGAAACCACTTTGATGTA+AGG + chr1_2:75812979-75812998 None:intergenic 40.0%
AATATGAGAACCCAGAGCTA+GGG + chr1_2:75812998-75813017 None:intergenic 40.0%
AAATATGAGAACCCAGAGCT+AGG + chr1_2:75812999-75813018 None:intergenic 40.0%
AATTGCTTTGATATGGGCTC+AGG - chr1_2:75813138-75813157 Msa0092990:intron 40.0%
GAAAAACATGCCCTGAAACA+AGG - chr1_2:75813303-75813322 Msa0092990:intron 40.0%
!!! CCGCTTTTTTACCTTGTTTC+AGG + chr1_2:75813317-75813336 None:intergenic 40.0%
AGGTAAAAAAGCGGCGAAAT+TGG - chr1_2:75813323-75813342 Msa0092990:intron 40.0%
AGCTTCAAAAAAGTCCCATC+CGG + chr1_2:75813391-75813410 None:intergenic 40.0%
TATGGTGGTACCTTTACAGA+GGG - chr1_2:75813417-75813436 Msa0092990:intron 40.0%
! GGTACGTTGTTTGGAACTTA+CGG - chr1_2:75813456-75813475 Msa0092990:intron 40.0%
! TTGTTTGGAACTTACGGTGT+AGG - chr1_2:75813462-75813481 Msa0092990:intron 40.0%
AACTTACGGTGTAGGTTTCA+TGG - chr1_2:75813470-75813489 Msa0092990:intron 40.0%
ACTTACGGTGTAGGTTTCAT+GGG - chr1_2:75813471-75813490 Msa0092990:intron 40.0%
TTGGAAGTCAATTGGGAAGT+TGG - chr1_2:75813526-75813545 Msa0092990:intron 40.0%
AGTCAATTGGGAAGTTGGAT+TGG - chr1_2:75813531-75813550 Msa0092990:intron 40.0%
!! CCTCTAGAGCTGTCATAAAT+AGG + chr1_2:75813700-75813719 None:intergenic 40.0%
! CCTATTTATGACAGCTCTAG+AGG - chr1_2:75813697-75813716 Msa0092990:five_prime_UTR 40.0%
GTGTTCTTATTCTCTGTGTC+TGG - chr1_2:75813851-75813870 Msa0092990:five_prime_UTR 40.0%
GAAAAGGGATTTGGATTGTG+TGG + chr1_2:75812073-75812092 None:intergenic 40.0%
! CGAGAGTCCATTTTCAATTG+TGG - chr1_2:75812098-75812117 Msa0092990:three_prime_UTR 40.0%
TGAAAATCCATGGCATGGAA+TGG + chr1_2:75812290-75812309 None:intergenic 40.0%
! TCTTCTGAAAATCCATGGCA+TGG + chr1_2:75812295-75812314 None:intergenic 40.0%
! ATGCCATGGATTTTCAGAAG+AGG - chr1_2:75812294-75812313 Msa0092990:exon 40.0%
! TCTCCTCTTCTGAAAATCCA+TGG + chr1_2:75812300-75812319 None:intergenic 40.0%
CAATGATGGCAGATACAGAT+AGG + chr1_2:75812334-75812353 None:intergenic 40.0%
TTGACCCCAAAAATTGGCAT+AGG - chr1_2:75812532-75812551 Msa0092990:CDS 40.0%
! GTCTCCTATGCCAATTTTTG+GGG + chr1_2:75812539-75812558 None:intergenic 40.0%
! CGTCTCCTATGCCAATTTTT+GGG + chr1_2:75812540-75812559 None:intergenic 40.0%
! TCGTCTCCTATGCCAATTTT+TGG + chr1_2:75812541-75812560 None:intergenic 40.0%
AGGGAAACCACTTTGATGTA+AGG + chr1_2:75812979-75812998 None:intergenic 40.0%
AATATGAGAACCCAGAGCTA+GGG + chr1_2:75812998-75813017 None:intergenic 40.0%
AAATATGAGAACCCAGAGCT+AGG + chr1_2:75812999-75813018 None:intergenic 40.0%
AATTGCTTTGATATGGGCTC+AGG - chr1_2:75813138-75813157 Msa0092990:intron 40.0%
GAAAAACATGCCCTGAAACA+AGG - chr1_2:75813303-75813322 Msa0092990:intron 40.0%
!!! CCGCTTTTTTACCTTGTTTC+AGG + chr1_2:75813317-75813336 None:intergenic 40.0%
AGGTAAAAAAGCGGCGAAAT+TGG - chr1_2:75813323-75813342 Msa0092990:intron 40.0%
AGCTTCAAAAAAGTCCCATC+CGG + chr1_2:75813391-75813410 None:intergenic 40.0%
TATGGTGGTACCTTTACAGA+GGG - chr1_2:75813417-75813436 Msa0092990:intron 40.0%
! GGTACGTTGTTTGGAACTTA+CGG - chr1_2:75813456-75813475 Msa0092990:intron 40.0%
! TTGTTTGGAACTTACGGTGT+AGG - chr1_2:75813462-75813481 Msa0092990:intron 40.0%
AACTTACGGTGTAGGTTTCA+TGG - chr1_2:75813470-75813489 Msa0092990:intron 40.0%
ACTTACGGTGTAGGTTTCAT+GGG - chr1_2:75813471-75813490 Msa0092990:intron 40.0%
TTGGAAGTCAATTGGGAAGT+TGG - chr1_2:75813526-75813545 Msa0092990:intron 40.0%
AGTCAATTGGGAAGTTGGAT+TGG - chr1_2:75813531-75813550 Msa0092990:intron 40.0%
!! CCTCTAGAGCTGTCATAAAT+AGG + chr1_2:75813700-75813719 None:intergenic 40.0%
! CCTATTTATGACAGCTCTAG+AGG - chr1_2:75813697-75813716 Msa0092990:five_prime_UTR 40.0%
CTCGACCATGAAAAGGGATT+TGG + chr1_2:75812082-75812101 None:intergenic 45.0%
TGGACTCTCGACCATGAAAA+GGG + chr1_2:75812088-75812107 None:intergenic 45.0%
ATGGACTCTCGACCATGAAA+AGG + chr1_2:75812089-75812108 None:intergenic 45.0%
TATCTCCCTTTCTCGTGAGA+GGG - chr1_2:75812144-75812163 Msa0092990:three_prime_UTR 45.0%
AGAATCCCTCTCACGAGAAA+GGG + chr1_2:75812152-75812171 None:intergenic 45.0%
AAGAATCCCTCTCACGAGAA+AGG + chr1_2:75812153-75812172 None:intergenic 45.0%
GTTTCTTCCATTCCATGCCA+TGG - chr1_2:75812280-75812299 Msa0092990:three_prime_UTR 45.0%
! TTAGGGGAGTTTTCCTGATC+AGG - chr1_2:75812478-75812497 Msa0092990:CDS 45.0%
TCATTACCACATCACGACAC+AGG + chr1_2:75812912-75812931 None:intergenic 45.0%
! AAAGTGGTTTCCCTAGCTCT+GGG - chr1_2:75812985-75813004 Msa0092990:intron 45.0%
TCCGTTCAGCTGAAAAATGC+AGG - chr1_2:75813064-75813083 Msa0092990:intron 45.0%
!! CCCTGCATTTTTCAGCTGAA+CGG + chr1_2:75813068-75813087 None:intergenic 45.0%
CCGTTCAGCTGAAAAATGCA+GGG - chr1_2:75813065-75813084 Msa0092990:intron 45.0%
GAAAAATGCAGGGAGCTTGT+TGG - chr1_2:75813075-75813094 Msa0092990:intron 45.0%
AGAACGCGTCATCCAAAAGT+GGG - chr1_2:75813100-75813119 Msa0092990:intron 45.0%
CAGCATCAACAAGAGCAGAT+TGG + chr1_2:75813254-75813273 None:intergenic 45.0%
! TCTTGTTGATGCTGCTTCAC+AGG - chr1_2:75813260-75813279 Msa0092990:intron 45.0%
! CTTGTTGATGCTGCTTCACA+GGG - chr1_2:75813261-75813280 Msa0092990:intron 45.0%
CTATGGTGGTACCTTTACAG+AGG - chr1_2:75813416-75813435 Msa0092990:intron 45.0%
TCTGAGGAATCCCTCTGTAA+AGG + chr1_2:75813430-75813449 None:intergenic 45.0%
TTTACAGAGGGATTCCTCAG+AGG - chr1_2:75813429-75813448 Msa0092990:intron 45.0%
AGAGGAACTGGTACGTTGTT+TGG - chr1_2:75813447-75813466 Msa0092990:intron 45.0%
CTTACGGTGTAGGTTTCATG+GGG - chr1_2:75813472-75813491 Msa0092990:intron 45.0%
TTACGGTGTAGGTTTCATGG+GGG - chr1_2:75813473-75813492 Msa0092990:intron 45.0%
GAGCAAAGGCTTGGAAGATT+TGG - chr1_2:75813495-75813514 Msa0092990:intron 45.0%
TGGAAGTAGAATAGGGCTCA+TGG - chr1_2:75813551-75813570 Msa0092990:intron 45.0%
AGGGCTCATGGTATATGATG+TGG - chr1_2:75813563-75813582 Msa0092990:intron 45.0%
GTGCATTTCGTGTTGCAGTA+TGG - chr1_2:75813594-75813613 Msa0092990:CDS 45.0%
CTCGACCATGAAAAGGGATT+TGG + chr1_2:75812082-75812101 None:intergenic 45.0%
TGGACTCTCGACCATGAAAA+GGG + chr1_2:75812088-75812107 None:intergenic 45.0%
ATGGACTCTCGACCATGAAA+AGG + chr1_2:75812089-75812108 None:intergenic 45.0%
TATCTCCCTTTCTCGTGAGA+GGG - chr1_2:75812144-75812163 Msa0092990:three_prime_UTR 45.0%
AGAATCCCTCTCACGAGAAA+GGG + chr1_2:75812152-75812171 None:intergenic 45.0%
AAGAATCCCTCTCACGAGAA+AGG + chr1_2:75812153-75812172 None:intergenic 45.0%
GTTTCTTCCATTCCATGCCA+TGG - chr1_2:75812280-75812299 Msa0092990:three_prime_UTR 45.0%
! TTAGGGGAGTTTTCCTGATC+AGG - chr1_2:75812478-75812497 Msa0092990:CDS 45.0%
TCATTACCACATCACGACAC+AGG + chr1_2:75812912-75812931 None:intergenic 45.0%
! AAAGTGGTTTCCCTAGCTCT+GGG - chr1_2:75812985-75813004 Msa0092990:intron 45.0%
TCCGTTCAGCTGAAAAATGC+AGG - chr1_2:75813064-75813083 Msa0092990:intron 45.0%
!! CCCTGCATTTTTCAGCTGAA+CGG + chr1_2:75813068-75813087 None:intergenic 45.0%
CCGTTCAGCTGAAAAATGCA+GGG - chr1_2:75813065-75813084 Msa0092990:intron 45.0%
GAAAAATGCAGGGAGCTTGT+TGG - chr1_2:75813075-75813094 Msa0092990:intron 45.0%
AGAACGCGTCATCCAAAAGT+GGG - chr1_2:75813100-75813119 Msa0092990:intron 45.0%
CAGCATCAACAAGAGCAGAT+TGG + chr1_2:75813254-75813273 None:intergenic 45.0%
! TCTTGTTGATGCTGCTTCAC+AGG - chr1_2:75813260-75813279 Msa0092990:intron 45.0%
! CTTGTTGATGCTGCTTCACA+GGG - chr1_2:75813261-75813280 Msa0092990:intron 45.0%
CTATGGTGGTACCTTTACAG+AGG - chr1_2:75813416-75813435 Msa0092990:intron 45.0%
TCTGAGGAATCCCTCTGTAA+AGG + chr1_2:75813430-75813449 None:intergenic 45.0%
TTTACAGAGGGATTCCTCAG+AGG - chr1_2:75813429-75813448 Msa0092990:intron 45.0%
AGAGGAACTGGTACGTTGTT+TGG - chr1_2:75813447-75813466 Msa0092990:intron 45.0%
CTTACGGTGTAGGTTTCATG+GGG - chr1_2:75813472-75813491 Msa0092990:intron 45.0%
TTACGGTGTAGGTTTCATGG+GGG - chr1_2:75813473-75813492 Msa0092990:intron 45.0%
GAGCAAAGGCTTGGAAGATT+TGG - chr1_2:75813495-75813514 Msa0092990:intron 45.0%
TGGAAGTAGAATAGGGCTCA+TGG - chr1_2:75813551-75813570 Msa0092990:intron 45.0%
AGGGCTCATGGTATATGATG+TGG - chr1_2:75813563-75813582 Msa0092990:intron 45.0%
GTGCATTTCGTGTTGCAGTA+TGG - chr1_2:75813594-75813613 Msa0092990:CDS 45.0%
CTATCTCCCTTTCTCGTGAG+AGG - chr1_2:75812143-75812162 Msa0092990:three_prime_UTR 50.0%
CATCACGACACAGGTCTGTT+TGG + chr1_2:75812903-75812922 None:intergenic 50.0%
AACAGACCTGTGTCGTGATG+TGG - chr1_2:75812903-75812922 Msa0092990:intron 50.0%
CAAAGTGGTTTCCCTAGCTC+TGG - chr1_2:75812984-75813003 Msa0092990:intron 50.0%
GAGAACGCGTCATCCAAAAG+TGG - chr1_2:75813099-75813118 Msa0092990:intron 50.0%
!! AGATGATGGGACCTGTGATG+CGG + chr1_2:75813365-75813384 None:intergenic 50.0%
ACAGGTCCCATCATCTCTTC+CGG - chr1_2:75813369-75813388 Msa0092990:intron 50.0%
TCCCATCATCTCTTCCGGAT+GGG - chr1_2:75813374-75813393 Msa0092990:intron 50.0%
TCCCATCCGGAAGAGATGAT+GGG + chr1_2:75813378-75813397 None:intergenic 50.0%
ACAACGTACCAGTTCCTCTG+AGG + chr1_2:75813446-75813465 None:intergenic 50.0%
TAGGTTTCATGGGGGAGCAA+AGG - chr1_2:75813481-75813500 Msa0092990:intron 50.0%
CTATCTCCCTTTCTCGTGAG+AGG - chr1_2:75812143-75812162 Msa0092990:three_prime_UTR 50.0%
CATCACGACACAGGTCTGTT+TGG + chr1_2:75812903-75812922 None:intergenic 50.0%
AACAGACCTGTGTCGTGATG+TGG - chr1_2:75812903-75812922 Msa0092990:intron 50.0%
CAAAGTGGTTTCCCTAGCTC+TGG - chr1_2:75812984-75813003 Msa0092990:intron 50.0%
GAGAACGCGTCATCCAAAAG+TGG - chr1_2:75813099-75813118 Msa0092990:intron 50.0%
!! AGATGATGGGACCTGTGATG+CGG + chr1_2:75813365-75813384 None:intergenic 50.0%
ACAGGTCCCATCATCTCTTC+CGG - chr1_2:75813369-75813388 Msa0092990:intron 50.0%
TCCCATCATCTCTTCCGGAT+GGG - chr1_2:75813374-75813393 Msa0092990:intron 50.0%
TCCCATCCGGAAGAGATGAT+GGG + chr1_2:75813378-75813397 None:intergenic 50.0%
ACAACGTACCAGTTCCTCTG+AGG + chr1_2:75813446-75813465 None:intergenic 50.0%
TAGGTTTCATGGGGGAGCAA+AGG - chr1_2:75813481-75813500 Msa0092990:intron 50.0%
GCTCAGGAACGCTAGCATGT+GGG - chr1_2:75813154-75813173 Msa0092990:intron 55.0%
CTCAGGAACGCTAGCATGTG+GGG - chr1_2:75813155-75813174 Msa0092990:intron 55.0%
GGCGAAATTGGCTACCCGTA+AGG - chr1_2:75813335-75813354 Msa0092990:intron 55.0%
!! TGTGATGCGGTTGGCCTTAC+GGG + chr1_2:75813352-75813371 None:intergenic 55.0%
!! CTGTGATGCGGTTGGCCTTA+CGG + chr1_2:75813353-75813372 None:intergenic 55.0%
GTCCCATCATCTCTTCCGGA+TGG - chr1_2:75813373-75813392 Msa0092990:intron 55.0%
GTCCCATCCGGAAGAGATGA+TGG + chr1_2:75813379-75813398 None:intergenic 55.0%
GAGGGATTCCTCAGAGGAAC+TGG - chr1_2:75813435-75813454 Msa0092990:intron 55.0%
TTCATGGGGGAGCAAAGGCT+TGG - chr1_2:75813486-75813505 Msa0092990:intron 55.0%
GCTCAGGAACGCTAGCATGT+GGG - chr1_2:75813154-75813173 Msa0092990:intron 55.0%
CTCAGGAACGCTAGCATGTG+GGG - chr1_2:75813155-75813174 Msa0092990:intron 55.0%
GGCGAAATTGGCTACCCGTA+AGG - chr1_2:75813335-75813354 Msa0092990:intron 55.0%
!! TGTGATGCGGTTGGCCTTAC+GGG + chr1_2:75813352-75813371 None:intergenic 55.0%
!! CTGTGATGCGGTTGGCCTTA+CGG + chr1_2:75813353-75813372 None:intergenic 55.0%
GTCCCATCATCTCTTCCGGA+TGG - chr1_2:75813373-75813392 Msa0092990:intron 55.0%
GTCCCATCCGGAAGAGATGA+TGG + chr1_2:75813379-75813398 None:intergenic 55.0%
GAGGGATTCCTCAGAGGAAC+TGG - chr1_2:75813435-75813454 Msa0092990:intron 55.0%
TTCATGGGGGAGCAAAGGCT+TGG - chr1_2:75813486-75813505 Msa0092990:intron 55.0%
GGCTCAGGAACGCTAGCATG+TGG - chr1_2:75813153-75813172 Msa0092990:intron 60.0%
CGTAAGGCCAACCGCATCAC+AGG - chr1_2:75813351-75813370 Msa0092990:intron 60.0%
GATGGGACCTGTGATGCGGT+TGG + chr1_2:75813361-75813380 None:intergenic 60.0%
GGCTCAGGAACGCTAGCATG+TGG - chr1_2:75813153-75813172 Msa0092990:intron 60.0%
CGTAAGGCCAACCGCATCAC+AGG - chr1_2:75813351-75813370 Msa0092990:intron 60.0%
GATGGGACCTGTGATGCGGT+TGG + chr1_2:75813361-75813380 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75812069 75813872 75812069 ID=Msa0092990;Name=Msa0092990
chr1_2 mRNA 75812069 75813872 75812069 ID=Msa0092990-mRNA-1;Parent=Msa0092990;Name=Msa0092990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=230|1|1|1|1|1|2|234|211
chr1_2 exon 75812069 75812868 75812069 ID=Msa0092990-mRNA-1:exon:26698;Parent=Msa0092990-mRNA-1
chr1_2 exon 75813573 75813872 75813573 ID=Msa0092990-mRNA-1:exon:26697;Parent=Msa0092990-mRNA-1
chr1_2 five_prime_UTR 75813643 75813872 75813643 ID=Msa0092990-mRNA-1:five_prime_utr;Parent=Msa0092990-mRNA-1
chr1_2 CDS 75813573 75813642 75813573 ID=Msa0092990-mRNA-1:cds;Parent=Msa0092990-mRNA-1
chr1_2 CDS 75812303 75812868 75812303 ID=Msa0092990-mRNA-1:cds;Parent=Msa0092990-mRNA-1
chr1_2 three_prime_UTR 75812069 75812302 75812069 ID=Msa0092990-mRNA-1:three_prime_utr;Parent=Msa0092990-mRNA-1
Gene Sequence

>Msa0092990

ATGGATTTTCAGAAGAGGAGAGTTCGGTTTCTCCTATCTGTATCTGCCATCATTGTTCTTAGCATCACAGCTGAAAAATGCAGGGAGCTTGTTGGCGAGAACGCGTCATCCAAAAGTGGGAAGTTTACATTATTAAATTGCTTTGATATGGGCTCAGGAACGCTAGCATGTGGGGTTAAAGAAAGTGTGAAGCTCTATGTTAATAATATTAGATCTGCTCATGTTGAAAAAGCAAGACATGATGCAATCCAATCTGCTCTTGTTGATGCTGCTTCACAGGGTATGTCGCCAATTGCTTCAGAAAAACATGCCCTGAAACAAGGTAAAAAAGCGGCGAAATTGGCTACCCGTAAGGCCAACCGCATCACAGGTCCCATCATCTCTTCCGGATGGGACTTTTTTGAAGCTGTTTACTATGGTGGTACCTTTACAGAGGGATTCCTCAGAGGAACTGGTACGTTGTTTGGAACTTACGGTGTAGGTTTCATGGGGGAGCAAAGGCTTGGAAGATTTGGTTATCTTGTTGGAAGTCAATTGGGAAGTTGGATTGGAAGTAGAATAGGGCTCATGGTATATGATGTGGCTAATGGAGTGCATTTCGTGTTGCAGTATGGAAGTAAAATTCAAGAAACATAA

Protein sequence

>Msa0092990

MDFQKRRVRFLLSVSAIIVLSITAEKCRELVGENASSKSGKFTLLNCFDMGSGTLACGVKESVKLYVNNIRSAHVEKARHDAIQSALVDAASQGMSPIASEKHALKQGKKAAKLATRKANRITGPIISSGWDFFEAVYYGGTFTEGFLRGTGTLFGTYGVGFMGEQRLGRFGYLVGSQLGSWIGSRIGLMVYDVANGVHFVLQYGSKIQET*