Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309930 | NP_001345025.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309930 | sp|P30173|ACT13_SOLTU | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071910 | Msa0309930 | 0.811433 | 7.018984e-51 | -8.615850e-47 |
| Msa0090770 | Msa0309930 | 0.812190 | 4.802966e-51 | -8.615850e-47 |
| Msa0106120 | Msa0309930 | 0.812855 | 3.436248e-51 | -8.615850e-47 |
| Msa0164360 | Msa0309930 | -0.819993 | 8.672246e-53 | -8.615850e-47 |
| Msa0185640 | Msa0309930 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0188680 | Msa0309930 | 0.803891 | 2.807226e-49 | -8.615850e-47 |
| Msa0197940 | Msa0309930 | 0.801451 | 8.950406e-49 | -8.615850e-47 |
| Msa0231860 | Msa0309930 | 0.888629 | 4.984482e-73 | -8.615850e-47 |
| Msa0269360 | Msa0309930 | -0.806982 | 6.315043e-50 | -8.615850e-47 |
| Msa0270220 | Msa0309930 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
| Msa0307830 | Msa0309930 | 0.812792 | 3.547574e-51 | -8.615850e-47 |
| Msa0309930 | Msa0465930 | -0.804620 | 1.979164e-49 | -8.615850e-47 |
| Msa0309930 | Msa0465970 | -0.813902 | 2.022676e-51 | -8.615850e-47 |
| Msa0309930 | Msa0598250 | -0.800916 | 1.151311e-48 | -8.615850e-47 |
| Msa0309930 | Msa0617370 | -0.806731 | 7.133113e-50 | -8.615850e-47 |
| Msa0309930 | Msa0655660 | 0.850036 | 2.200490e-60 | -8.615850e-47 |
| Msa0309930 | Msa0679990 | -0.818808 | 1.615973e-52 | -8.615850e-47 |
| Msa0309930 | Msa0688550 | -0.808691 | 2.734818e-50 | -8.615850e-47 |
| Msa0309930 | Msa0722930 | -0.824532 | 7.668788e-54 | -8.615850e-47 |
| Msa0309930 | Msa0723140 | -0.821781 | 3.364737e-53 | -8.615850e-47 |
| Msa0309930 | Msa0724050 | -0.804196 | 2.426007e-49 | -8.615850e-47 |
| Msa0309930 | Msa0843280 | -0.819687 | 1.018919e-52 | -8.615850e-47 |
| Msa0309930 | Msa0937940 | -0.806948 | 6.420392e-50 | -8.615850e-47 |
| Msa0309930 | Msa0961420 | 0.803288 | 3.744642e-49 | -8.615850e-47 |
| Msa0309930 | Msa1038320 | -0.819032 | 1.437052e-52 | -8.615850e-47 |
| Msa0309930 | Msa1072350 | -0.804368 | 2.234112e-49 | -8.615850e-47 |
| Msa0309930 | Msa1082820 | 0.808565 | 2.909582e-50 | -8.615850e-47 |
| Msa0309930 | Msa1168680 | 0.825113 | 5.594919e-54 | -8.615850e-47 |
| Msa0309930 | Msa1168730 | 0.810398 | 1.176049e-50 | -8.615850e-47 |
| Msa0309930 | Msa1184580 | -0.808513 | 2.985581e-50 | -8.615850e-47 |
| Msa0309930 | Msa1222030 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa0309930 | Msa1252070 | -0.818708 | 1.702783e-52 | -8.615850e-47 |
| Msa0309930 | Msa1296960 | 0.800287 | 1.547192e-48 | -8.615850e-47 |
| Msa0309930 | Msa1335970 | 0.850919 | 1.243288e-60 | -8.615850e-47 |
| Msa0309930 | Msa1347290 | -0.808539 | 2.947583e-50 | -8.615850e-47 |
| Msa0309930 | Msa1388790 | 0.801869 | 7.347152e-49 | -8.615850e-47 |
| Msa0309930 | Msa1414330 | 0.888534 | 5.420568e-73 | -8.615850e-47 |
| Msa0309930 | Msa1443290 | 0.811896 | 5.565128e-51 | -8.615850e-47 |
| Msa0309930 | Msa1447560 | -0.811399 | 7.139353e-51 | -8.615850e-47 |
| Msa0309930 | Msa1457670 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa0309930 | Msa1464560 | -0.800266 | 1.562066e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309930 | MtrunA17_Chr2g0278591 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 780 |
| Msa0309930 | MtrunA17_Chr3g0129641 | 94.695 | 377 | 20 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
| Msa0309930 | MtrunA17_Chr6g0448881 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
| Msa0309930 | MtrunA17_Chr2g0328091 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0309930 | MtrunA17_Chr7g0223901 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 751 |
| Msa0309930 | MtrunA17_Chr1g0175391 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 750 |
| Msa0309930 | MtrunA17_Chr7g0258721 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0309930 | MtrunA17_Chr7g0224401 | 43.536 | 379 | 200 | 3 | 10 | 374 | 7 | 385 | 1.38e-121 | 357 |
| Msa0309930 | MtrunA17_Chr5g0427591 | 36.323 | 446 | 211 | 11 | 1 | 376 | 1 | 443 | 9.52e-91 | 280 |
| Msa0309930 | MtrunA17_Chr8g0361001 | 36.323 | 446 | 211 | 11 | 1 | 376 | 1 | 443 | 1.76e-90 | 279 |
| Msa0309930 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 1.18e-74 | 238 |
| Msa0309930 | MtrunA17_Chr3g0089031 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 1.01e-70 | 225 |
| Msa0309930 | MtrunA17_Chr2g0305361 | 28.111 | 434 | 246 | 7 | 8 | 377 | 6 | 437 | 5.61e-59 | 197 |
| Msa0309930 | MtrunA17_Chr3g0080021 | 31.338 | 284 | 171 | 9 | 91 | 358 | 179 | 454 | 5.06e-40 | 147 |
| Msa0309930 | MtrunA17_Chr8g0369101 | 32.082 | 293 | 172 | 10 | 91 | 366 | 187 | 469 | 1.92e-37 | 140 |
| Msa0309930 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 5.39e-23 | 100 |
| Msa0309930 | MtrunA17_Chr3g0111971 | 34.426 | 122 | 77 | 2 | 250 | 368 | 586 | 707 | 6.37e-16 | 79.3 |
| Msa0309930 | MtrunA17_Chr8g0336061 | 40.217 | 92 | 42 | 1 | 241 | 319 | 12 | 103 | 1.84e-18 | 80.1 |
| Msa0309930 | MtrunA17_Chr8g0336071 | 37.895 | 95 | 59 | 0 | 105 | 199 | 1 | 95 | 1.39e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309930 | AT3G12110.1 | 94.164 | 377 | 22 | 0 | 1 | 377 | 1 | 377 | 0.0 | 751 |
| Msa0309930 | AT5G09810.1 | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0309930 | AT3G53750.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT3G53750.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT2G37620.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT2G37620.3 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT2G37620.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT2G37620.4 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 741 |
| Msa0309930 | AT5G59370.2 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 738 |
| Msa0309930 | AT5G59370.1 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 738 |
| Msa0309930 | AT3G46520.2 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 736 |
| Msa0309930 | AT3G46520.1 | 91.777 | 377 | 31 | 0 | 1 | 377 | 1 | 377 | 0.0 | 736 |
| Msa0309930 | AT1G49240.1 | 89.920 | 377 | 38 | 0 | 1 | 377 | 1 | 377 | 0.0 | 731 |
| Msa0309930 | AT3G18780.2 | 89.655 | 377 | 39 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| Msa0309930 | AT3G18780.3 | 89.655 | 377 | 39 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| Msa0309930 | AT3G18780.1 | 88.920 | 361 | 40 | 0 | 1 | 361 | 1 | 361 | 0.0 | 689 |
| Msa0309930 | AT2G42100.1 | 83.696 | 368 | 60 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0309930 | AT2G42090.1 | 70.270 | 370 | 105 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
| Msa0309930 | AT2G42170.1 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0309930 | AT2G42170.3 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0309930 | AT2G42170.4 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa0309930 | AT2G42170.2 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 522 |
| Msa0309930 | AT2G42170.5 | 77.434 | 226 | 48 | 1 | 152 | 377 | 9 | 231 | 2.33e-131 | 376 |
| Msa0309930 | AT3G27000.1 | 43.536 | 379 | 200 | 3 | 10 | 374 | 7 | 385 | 2.77e-122 | 358 |
| Msa0309930 | AT1G18450.1 | 36.795 | 443 | 210 | 8 | 1 | 376 | 1 | 440 | 3.30e-94 | 289 |
| Msa0309930 | AT1G13180.1 | 34.383 | 413 | 219 | 9 | 10 | 373 | 9 | 418 | 4.91e-75 | 239 |
| Msa0309930 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 6.86e-69 | 221 |
| Msa0309930 | AT3G33520.1 | 30.641 | 421 | 234 | 7 | 10 | 377 | 5 | 420 | 6.32e-61 | 202 |
| Msa0309930 | AT5G56180.3 | 31.271 | 291 | 174 | 9 | 91 | 364 | 50 | 331 | 9.44e-37 | 136 |
| Msa0309930 | AT5G56180.1 | 31.271 | 291 | 174 | 9 | 91 | 364 | 182 | 463 | 1.06e-35 | 136 |
| Msa0309930 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 2.52e-26 | 111 |
| Msa0309930 | AT3G12380.2 | 35.246 | 122 | 76 | 1 | 250 | 368 | 595 | 716 | 2.83e-16 | 80.9 |
| Msa0309930 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 1.27e-25 | 109 |
| Msa0309930 | AT3G12380.1 | 35.246 | 122 | 76 | 1 | 250 | 368 | 589 | 710 | 3.06e-16 | 80.9 |
| Msa0309930 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 5.36e-24 | 97.1 |
| Msa0309930 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 5.36e-24 | 97.1 |
| Msa0309930 | AT5G56180.2 | 32.178 | 202 | 114 | 7 | 91 | 281 | 182 | 371 | 5.68e-20 | 90.9 |
| Msa0309930 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 1.14e-12 | 66.2 |
Find 150 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTATATGTTTCTTCTTT+AGG | 0.181484 | 2_4:-4709569 | Msa0309930:three_prime_UTR |
| CTCTTCCAGCCTTCTCTAAT+TGG | 0.203357 | 2_4:-4710177 | Msa0309930:CDS |
| TTCATGCTGGTCATGAATTT+AGG | 0.257723 | 2_4:-4709457 | Msa0309930:three_prime_UTR |
| TGAAAGTCTCAAACATAATC+TGG | 0.264920 | 2_4:+4711087 | None:intergenic |
| ATTCTTCGTTTGGATCTTGC+TGG | 0.283771 | 2_4:-4710435 | Msa0309930:CDS |
| AGAAGCACAGGGTGTTCTTC+TGG | 0.289026 | 2_4:+4711155 | None:intergenic |
| ACGAGGTCGCCCAATGATAC+TGG | 0.294802 | 2_4:+4711352 | None:intergenic |
| TCCCCATGCAATTCTTCGTT+TGG | 0.297491 | 2_4:-4710445 | Msa0309930:CDS |
| GTAGGTATTGTGCTTGATTC+TGG | 0.298638 | 2_4:-4710513 | Msa0309930:intron |
| CGAGGAGTGGGAAGTGTTAC+AGG | 0.312663 | 2_4:+4712137 | None:intergenic |
| AGCATGGTATAGTTAGTAAC+TGG | 0.325644 | 2_4:-4711232 | Msa0309930:CDS |
| GGAGGTTCTACTATGTTTCC+TGG | 0.336897 | 2_4:-4710057 | Msa0309930:CDS |
| AACCAAACTTGACTGAAATA+TGG | 0.338167 | 2_4:+4709664 | None:intergenic |
| AAGAGCATACCCTTCATATA+TGG | 0.341233 | 2_4:+4710467 | None:intergenic |
| CCTCATACAAATATAGAATA+AGG | 0.343160 | 2_4:+4709292 | None:intergenic |
| TTGAAACGCACCTTGTTAGA+AGG | 0.349336 | 2_4:+4712070 | None:intergenic |
| CCATTTCTTGTTCAAAATCA+AGG | 0.349898 | 2_4:+4710298 | None:intergenic |
| AAGGGTGAATATGATGAATC+TGG | 0.351116 | 2_4:-4709764 | Msa0309930:CDS |
| GAATTTAGGTGCCTCTAGTT+AGG | 0.351952 | 2_4:-4709443 | Msa0309930:three_prime_UTR |
| TGCCATATTTCAGTCAAGTT+TGG | 0.354500 | 2_4:-4709666 | Msa0309930:three_prime_UTR |
| GTGATGAAGCTCAGTCAAAA+AGG | 0.356008 | 2_4:-4711283 | Msa0309930:CDS |
| ACCCAACTCAGAAGCACTTT+CGG | 0.364555 | 2_4:+4709726 | None:intergenic |
| ATGACTCAAAATTCCCTGTC+TGG | 0.371267 | 2_4:+4709389 | None:intergenic |
| GCCGTGTTCCCCAGTATCAT+TGG | 0.371777 | 2_4:-4711362 | Msa0309930:CDS |
| CTGGATTGGTGGGTCTATCT+TGG | 0.374688 | 2_4:-4709941 | Msa0309930:CDS |
| GAAGGCTGGAAGAGTACTTC+GGG | 0.376616 | 2_4:+4710186 | None:intergenic |
| ATGTTTCTTCTTTAGGTCCT+TGG | 0.378100 | 2_4:-4709562 | Msa0309930:three_prime_UTR |
| TGAACTTTGTAGGTTCTGTT+TGG | 0.381657 | 2_4:-4709502 | Msa0309930:three_prime_UTR |
| CCTTATTCTATATTTGTATG+AGG | 0.384653 | 2_4:-4709292 | Msa0309930:three_prime_UTR |
| CTAACTATACCATGCTCTAT+AGG | 0.385023 | 2_4:+4711239 | None:intergenic |
| AGTTAGTAACTGGGACGATA+TGG | 0.387331 | 2_4:-4711222 | Msa0309930:CDS |
| CTCATACGGTCAGCAATTCC+AGG | 0.397451 | 2_4:+4710039 | None:intergenic |
| TGAAGTGTGATGTTGATATT+AGG | 0.398134 | 2_4:-4710110 | Msa0309930:CDS |
| ACCGAAAGTGCTTCTGAGTT+GGG | 0.400428 | 2_4:-4709727 | Msa0309930:exon |
| TTCTTCGTTTGGATCTTGCT+GGG | 0.403209 | 2_4:-4710434 | Msa0309930:CDS |
| GCAAATCAAACAAACTCTAT+AGG | 0.404741 | 2_4:+4709262 | None:intergenic |
| TCTATATTTGTATGAGGTGA+TGG | 0.414505 | 2_4:-4709286 | Msa0309930:three_prime_UTR |
| AGAATTTGATCACAACTCAT+TGG | 0.428205 | 2_4:+4709697 | None:intergenic |
| AATATATCTAGTTTAATGAA+TGG | 0.428979 | 2_4:-4709607 | Msa0309930:three_prime_UTR |
| GATATTAGGAAGGATCTATA+TGG | 0.429892 | 2_4:-4710096 | Msa0309930:CDS |
| GGGACGATATGGAAAAGATT+TGG | 0.432591 | 2_4:-4711211 | Msa0309930:CDS |
| AGAACAAGGTTTATATATGA+AGG | 0.433280 | 2_4:+4712174 | None:intergenic |
| TATGGAAATATTGTGCTTAG+TGG | 0.440342 | 2_4:-4710078 | Msa0309930:CDS |
| TTGCAGGTGATGATGCTCCT+AGG | 0.440390 | 2_4:-4711385 | Msa0309930:CDS |
| GTCATACCGGTGTAATGGTT+GGG | 0.440783 | 2_4:-4711331 | Msa0309930:CDS |
| CACCGAAAGTGCTTCTGAGT+TGG | 0.441198 | 2_4:-4709728 | Msa0309930:exon |
| CTTGTCGTTGACAATGGAAC+TGG | 0.444949 | 2_4:-4711537 | Msa0309930:CDS |
| ATTGTTATGACCTGTCCATC+AGG | 0.450057 | 2_4:+4710231 | None:intergenic |
| TGGATTGCAACATACATTGC+AGG | 0.450250 | 2_4:+4711059 | None:intergenic |
| CTGAGAGGAAGTACAGTGTC+TGG | 0.452337 | 2_4:-4709960 | Msa0309930:CDS |
| GGAGCCTCGGTAAGAAGCAC+AGG | 0.455052 | 2_4:+4711143 | None:intergenic |
| CATATCTATTTCTCCCAGAC+AGG | 0.455196 | 2_4:-4709403 | Msa0309930:three_prime_UTR |
| TGCAATGTATGTTGCAATCC+AGG | 0.457549 | 2_4:-4711057 | Msa0309930:CDS |
| ATCACTCAGTACCTTTCAAC+AGG | 0.460639 | 2_4:-4709917 | Msa0309930:intron |
| TGACTTATTATTTGATGCTG+TGG | 0.465608 | 2_4:-4709642 | Msa0309930:three_prime_UTR |
| GATGGACAGGTCATAACAAT+AGG | 0.466277 | 2_4:-4710228 | Msa0309930:CDS |
| CTACGAGTTGCCTGATGGAC+AGG | 0.466607 | 2_4:-4710241 | Msa0309930:CDS |
| CCGTGTTCCCCAGTATCATT+GGG | 0.466998 | 2_4:-4711361 | Msa0309930:CDS |
| GGGATGGTATTGAACTTTGT+AGG | 0.467493 | 2_4:-4709512 | Msa0309930:three_prime_UTR |
| CCAGCCTTCTCTAATTGGTA+TGG | 0.471456 | 2_4:-4710172 | Msa0309930:CDS |
| TACCGGTGTAATGGTTGGGA+TGG | 0.474226 | 2_4:-4711327 | Msa0309930:CDS |
| GACTTATTATTTGATGCTGT+GGG | 0.478235 | 2_4:-4709641 | Msa0309930:three_prime_UTR |
| CACTGATTTCCTTGCTCATA+CGG | 0.481431 | 2_4:+4710025 | None:intergenic |
| CACTTTCGGTGAACAATAGC+TGG | 0.483033 | 2_4:+4709740 | None:intergenic |
| CTATTGGCTTTAGGATTGAG+TGG | 0.488468 | 2_4:+4711122 | None:intergenic |
| CGAGGTCGCCCAATGATACT+GGG | 0.492401 | 2_4:+4711353 | None:intergenic |
| AAGTACAGTGTCTGGATTGG+TGG | 0.495328 | 2_4:-4709952 | Msa0309930:CDS |
| TGGAGAAGCGAGCGAGGAGT+GGG | 0.495732 | 2_4:+4712125 | None:intergenic |
| CATTTCTTGTTCAAAATCAA+GGG | 0.500283 | 2_4:+4710299 | None:intergenic |
| TGACTCAAAATTCCCTGTCT+GGG | 0.503869 | 2_4:+4709390 | None:intergenic |
| GCGTGATTTAACAGAGTACT+TGG | 0.505684 | 2_4:-4710412 | Msa0309930:CDS |
| AGAGCATACCCTTCATATAT+GGG | 0.507300 | 2_4:+4710468 | None:intergenic |
| CAAACCTGTGGTACGTCCAC+TGG | 0.513599 | 2_4:+4711016 | None:intergenic |
| CAGACACTGTACTTCCTCTC+AGG | 0.514199 | 2_4:+4709961 | None:intergenic |
| ACCTCGTCATACCGGTGTAA+TGG | 0.515976 | 2_4:-4711336 | Msa0309930:CDS |
| CACACAGTGCCCATATATGA+AGG | 0.517963 | 2_4:-4710477 | Msa0309930:CDS |
| CGTCATACCGGTGTAATGGT+TGG | 0.521275 | 2_4:-4711332 | Msa0309930:CDS |
| CTTCAGTACCTCAGCTGAGA+AGG | 0.523675 | 2_4:-4710361 | Msa0309930:CDS |
| AGATTCATCATATTCACCCT+TGG | 0.524089 | 2_4:+4709766 | None:intergenic |
| CTAATTGGTATGGAAGCTAC+TGG | 0.524153 | 2_4:-4710162 | Msa0309930:CDS |
| AGGTGCCTCTAGTTAGGAGG+AGG | 0.526210 | 2_4:-4709437 | Msa0309930:three_prime_UTR |
| CAAAGAGAAACTAGCATATG+TGG | 0.529444 | 2_4:-4710322 | Msa0309930:CDS |
| CCCAATGATACTGGGGAACA+CGG | 0.529959 | 2_4:+4711361 | None:intergenic |
| CTATATTTGTATGAGGTGAT+GGG | 0.531838 | 2_4:-4709285 | Msa0309930:three_prime_UTR |
| CAACCTCTTGTCGTTGACAA+TGG | 0.532453 | 2_4:-4711543 | Msa0309930:CDS |
| CTCCACGGCAGAGCTACTCT+TGG | 0.533395 | 2_4:+4710269 | None:intergenic |
| GAAAGTCTCAAACATAATCT+GGG | 0.537293 | 2_4:+4711088 | None:intergenic |
| ATCCAAACGAAGAATTGCAT+GGG | 0.537295 | 2_4:+4710443 | None:intergenic |
| TGCAGGTGATGATGCTCCTA+GGG | 0.537820 | 2_4:-4711384 | Msa0309930:CDS |
| ATTGTGCTTGATTCTGGTGA+TGG | 0.539615 | 2_4:-4710507 | Msa0309930:CDS |
| CTTCTCAGCTGAGGTACTGA+AGG | 0.541718 | 2_4:+4710362 | None:intergenic |
| CCATACCAATTAGAGAAGGC+TGG | 0.544939 | 2_4:+4710172 | None:intergenic |
| TTTAGGATTGAGTGGAGCCT+CGG | 0.559877 | 2_4:+4711130 | None:intergenic |
| AGAAGGCTGGAAGAGTACTT+CGG | 0.560097 | 2_4:+4710185 | None:intergenic |
| TATGCCAGTGGACGTACCAC+AGG | 0.563139 | 2_4:-4711020 | Msa0309930:intron |
| GGTCAGAAGGATGCTTATGT+AGG | 0.563553 | 2_4:-4711305 | Msa0309930:CDS |
| AAGAGCTACGAGTTGCCTGA+TGG | 0.564122 | 2_4:-4710246 | Msa0309930:CDS |
| AATGGTTGGGATGGGTCAGA+AGG | 0.565362 | 2_4:-4711318 | Msa0309930:CDS |
| ATACTGGGGAACACGGCCCT+AGG | 0.566767 | 2_4:+4711368 | None:intergenic |
| AGGGTGAATATGATGAATCT+GGG | 0.568343 | 2_4:-4709763 | Msa0309930:CDS |
| GGAAATATTGTGCTTAGTGG+AGG | 0.572013 | 2_4:-4710075 | Msa0309930:CDS |
| ATCAACATCACACTTCATGA+TGG | 0.572991 | 2_4:+4710116 | None:intergenic |
| CATACAGAGATAAGACGGCC+TGG | 0.574959 | 2_4:+4711039 | None:intergenic |
| GATCCAAACGAAGAATTGCA+TGG | 0.574973 | 2_4:+4710442 | None:intergenic |
| CTAGTTTCTCTTTGACATCA+CGG | 0.575209 | 2_4:+4710331 | None:intergenic |
| ATTGGGCGACCTCGTCATAC+CGG | 0.575640 | 2_4:-4711344 | Msa0309930:CDS |
| GTGGAGAAGCGAGCGAGGAG+TGG | 0.580963 | 2_4:+4712124 | None:intergenic |
| GGAAGAGTACTTCGGGGCAA+CGG | 0.581700 | 2_4:+4710193 | None:intergenic |
| AGTACAGTGTCTGGATTGGT+GGG | 0.583080 | 2_4:-4709951 | Msa0309930:CDS |
| ACCGGTGTAATGGTTGGGAT+GGG | 0.584646 | 2_4:-4711326 | Msa0309930:CDS |
| TCCAAGTAGCATGAAAATCA+AGG | 0.588368 | 2_4:-4709995 | Msa0309930:CDS |
| GTTCCATTGTCAACGACAAG+AGG | 0.589221 | 2_4:+4711540 | None:intergenic |
| GAACAAGGTTTATATATGAA+GGG | 0.591054 | 2_4:+4712175 | None:intergenic |
| GTCTTATCTCTGTATGCCAG+TGG | 0.591211 | 2_4:-4711032 | Msa0309930:CDS |
| GAACGGTGGAGAAGCGAGCG+AGG | 0.591368 | 2_4:+4712119 | None:intergenic |
| TATGCAGATGTGGATCTCCA+AGG | 0.595738 | 2_4:-4709783 | Msa0309930:intron |
| TTTAGGTGCCTCTAGTTAGG+AGG | 0.597583 | 2_4:-4709440 | Msa0309930:three_prime_UTR |
| GTGAAAATTCTCACTGAGAG+AGG | 0.601733 | 2_4:-4710390 | Msa0309930:CDS |
| CAATGGAACTGGAATGGTCA+AGG | 0.605491 | 2_4:-4711526 | Msa0309930:intron |
| TTGAAGTATCCTATAGAGCA+TGG | 0.607917 | 2_4:-4711248 | Msa0309930:CDS |
| TTCGGGGCAACGGAATCTCT+CGG | 0.608877 | 2_4:+4710203 | None:intergenic |
| AAAGTGTGTCAGAGAGAACA+AGG | 0.609943 | 2_4:+4712160 | None:intergenic |
| TACCAAGAGTAGCTCTGCCG+TGG | 0.610567 | 2_4:-4710271 | Msa0309930:CDS |
| GACAATTTCCTTCTCAGCTG+AGG | 0.611009 | 2_4:+4710353 | None:intergenic |
| AGGAAGTACAGTGTCTGGAT+TGG | 0.611355 | 2_4:-4709955 | Msa0309930:CDS |
| ATGCAGATGTGGATCTCCAA+GGG | 0.617585 | 2_4:-4709782 | Msa0309930:intron |
| GTGAGTTCATACCTGTTGAA+AGG | 0.619084 | 2_4:+4709906 | None:intergenic |
| AATTGCTGACCGTATGAGCA+AGG | 0.626661 | 2_4:-4710034 | Msa0309930:CDS |
| AGGTTTATATATGAAGGGTG+AGG | 0.629792 | 2_4:+4712180 | None:intergenic |
| ATATCTATTTCTCCCAGACA+GGG | 0.631530 | 2_4:-4709402 | Msa0309930:three_prime_UTR |
| GCATGGTATAGTTAGTAACT+GGG | 0.634959 | 2_4:-4711231 | Msa0309930:CDS |
| GCTTCCATACCAATTAGAGA+AGG | 0.635424 | 2_4:+4710168 | None:intergenic |
| GGTGCCTCTAGTTAGGAGGA+GGG | 0.639087 | 2_4:-4709436 | Msa0309930:three_prime_UTR |
| CGTTGACAATGGAACTGGAA+TGG | 0.640256 | 2_4:-4711532 | Msa0309930:CDS |
| GTGTGATGTTGATATTAGGA+AGG | 0.640348 | 2_4:-4710106 | Msa0309930:CDS |
| ACCCATCCCAACCATTACAC+CGG | 0.641755 | 2_4:+4711325 | None:intergenic |
| ACCATTACACCGGTATGACG+AGG | 0.651416 | 2_4:+4711335 | None:intergenic |
| ACTGGCATACAGAGATAAGA+CGG | 0.654330 | 2_4:+4711034 | None:intergenic |
| AGGTGGTTGCACCTCCTGAG+AGG | 0.655646 | 2_4:-4709975 | Msa0309930:CDS |
| ATCACCCTCCTCCTAACTAG+AGG | 0.657265 | 2_4:+4709432 | None:intergenic |
| CTATAGGATACTTCAATGTG+AGG | 0.657321 | 2_4:+4711255 | None:intergenic |
| ACACAGTGCCCATATATGAA+GGG | 0.658479 | 2_4:-4710476 | Msa0309930:CDS |
| ACACTGTACTTCCTCTCAGG+AGG | 0.673323 | 2_4:+4709964 | None:intergenic |
| ACACCCTGTGCTTCTTACCG+AGG | 0.679352 | 2_4:-4711147 | Msa0309930:CDS |
| AAGGCTGGAAGAGTACTTCG+GGG | 0.692122 | 2_4:+4710187 | None:intergenic |
| TCCAAACGAAGAATTGCATG+GGG | 0.695056 | 2_4:+4710444 | None:intergenic |
| GAGCCTCGGTAAGAAGCACA+GGG | 0.711665 | 2_4:+4711144 | None:intergenic |
| CAACTCGTAGCTCTTCTCCA+CGG | 0.712406 | 2_4:+4710254 | None:intergenic |
| GAGGTCGCCCAATGATACTG+GGG | 0.722255 | 2_4:+4711354 | None:intergenic |
| AAGTAGCATGAAAATCAAGG+TGG | 0.729568 | 2_4:-4709992 | Msa0309930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTTATAATGATTTCTT+AGG | - | chr2_4:4710776-4710795 | Msa0309930:intron | 15.0% |
| !! | TTGGAAAAGAAAAAAAAAAT+TGG | + | chr2_4:4711498-4711517 | None:intergenic | 15.0% |
| !!! | AATATATCTAGTTTAATGAA+TGG | - | chr2_4:4711753-4711772 | Msa0309930:intron | 15.0% |
| !!! | ATATTTATTTTATGCTTAGT+TGG | - | chr2_4:4712001-4712020 | Msa0309930:intron | 15.0% |
| !! | AAAATCAAAAAATCAAATCC+AGG | + | chr2_4:4709508-4709527 | None:intergenic | 20.0% |
| !! | TTTCAACAAAATTAACAGAT+CGG | + | chr2_4:4709635-4709654 | None:intergenic | 20.0% |
| !! | ATATATAATTTCGTGTTTGA+AGG | - | chr2_4:4709696-4709715 | Msa0309930:three_prime_UTR | 20.0% |
| !! | ACAAACAATTCTATATGTAT+TGG | - | chr2_4:4710680-4710699 | Msa0309930:intron | 20.0% |
| ! | GAACAAGGTTTATATATGAA+GGG | + | chr2_4:4709188-4709207 | None:intergenic | 25.0% |
| ! | AGAACAAGGTTTATATATGA+AGG | + | chr2_4:4709189-4709208 | None:intergenic | 25.0% |
| ! | TTGAAGGAATTATGAAATCA+CGG | - | chr2_4:4709712-4709731 | Msa0309930:three_prime_UTR | 25.0% |
| ! | ATGTACATGTCTTTAAACTT+CGG | - | chr2_4:4710505-4710524 | Msa0309930:CDS | 25.0% |
| ! | CAAACTGCATATAAAATTTC+AGG | + | chr2_4:4710545-4710564 | None:intergenic | 25.0% |
| !!! | TGTACATTTGTTATTATGCA+AGG | + | chr2_4:4710740-4710759 | None:intergenic | 25.0% |
| ! | TGCATAATAACAAATGTACA+AGG | - | chr2_4:4710740-4710759 | Msa0309930:intron | 25.0% |
| ! | CATTTCTTGTTCAAAATCAA+GGG | + | chr2_4:4711064-4711083 | None:intergenic | 25.0% |
| !! | TTCTTTTCCAATTGTCATAA+TGG | - | chr2_4:4711507-4711526 | Msa0309930:intron | 25.0% |
| ! | ATGCTATATGTTTCTTCTTT+AGG | - | chr2_4:4711791-4711810 | Msa0309930:intron | 25.0% |
| !!! | CTTTTATTTGTTTTTCATGC+TGG | - | chr2_4:4711890-4711909 | Msa0309930:intron | 25.0% |
| ! | CCTCATACAAATATAGAATA+AGG | + | chr2_4:4712071-4712090 | None:intergenic | 25.0% |
| ! | CCTTATTCTATATTTGTATG+AGG | - | chr2_4:4712068-4712087 | Msa0309930:intron | 25.0% |
| !!! | CGCTTTTTTAATCGTTTACT+TGG | - | chr2_4:4709330-4709349 | Msa0309930:three_prime_UTR | 30.0% |
| !!! | TACTTGGTCTTTTTTGTTTC+TGG | - | chr2_4:4709346-4709365 | Msa0309930:three_prime_UTR | 30.0% |
| !!! | TATGCATAGGTTTTGAAAGA+TGG | - | chr2_4:4709777-4709796 | Msa0309930:CDS | 30.0% |
| !!! | ATCTTTTCTCTATTGGCTTT+AGG | + | chr2_4:4710250-4710269 | None:intergenic | 30.0% |
| GAAAGTCTCAAACATAATCT+GGG | + | chr2_4:4710275-4710294 | None:intergenic | 30.0% | |
| TGAAAGTCTCAAACATAATC+TGG | + | chr2_4:4710276-4710295 | None:intergenic | 30.0% | |
| TGTGATCATGTATCTTCAAT+TGG | - | chr2_4:4710397-4710416 | Msa0309930:CDS | 30.0% | |
| TTGTACATGTCTTGAAACTT+TGG | - | chr2_4:4710588-4710607 | Msa0309930:intron | 30.0% | |
| GCAACTTGAAATTCTATATG+CGG | - | chr2_4:4710621-4710640 | Msa0309930:intron | 30.0% | |
| TGTACAAGGATGATAATACA+TGG | - | chr2_4:4710754-4710773 | Msa0309930:intron | 30.0% | |
| ACAAACAATTCAAACCATGA+AGG | + | chr2_4:4710822-4710841 | None:intergenic | 30.0% | |
| TTGAATTGTTTGTTCTACGT+AGG | - | chr2_4:4710829-4710848 | Msa0309930:intron | 30.0% | |
| CCATTTCTTGTTCAAAATCA+AGG | + | chr2_4:4711065-4711084 | None:intergenic | 30.0% | |
| ! | CCTTGATTTTGAACAAGAAA+TGG | - | chr2_4:4711062-4711081 | Msa0309930:CDS | 30.0% |
| TGAAGTGTGATGTTGATATT+AGG | - | chr2_4:4711250-4711269 | Msa0309930:CDS | 30.0% | |
| GATATTAGGAAGGATCTATA+TGG | - | chr2_4:4711264-4711283 | Msa0309930:CDS | 30.0% | |
| TATGGAAATATTGTGCTTAG+TGG | - | chr2_4:4711282-4711301 | Msa0309930:CDS | 30.0% | |
| ! | TTCCAATTGTCATAATGGAA+TGG | - | chr2_4:4711512-4711531 | Msa0309930:intron | 30.0% |
| ! | TAATGGAATGGACCATTTTA+TGG | - | chr2_4:4711524-4711543 | Msa0309930:intron | 30.0% |
| ! | AATGGAATGGACCATTTTAT+GGG | - | chr2_4:4711525-4711544 | Msa0309930:intron | 30.0% |
| TGTTTAATTCTATGCAGATG+TGG | - | chr2_4:4711567-4711586 | Msa0309930:CDS | 30.0% | |
| AGAATTTGATCACAACTCAT+TGG | + | chr2_4:4711666-4711685 | None:intergenic | 30.0% | |
| AACCAAACTTGACTGAAATA+TGG | + | chr2_4:4711699-4711718 | None:intergenic | 30.0% | |
| TGACTTATTATTTGATGCTG+TGG | - | chr2_4:4711718-4711737 | Msa0309930:intron | 30.0% | |
| GACTTATTATTTGATGCTGT+GGG | - | chr2_4:4711719-4711738 | Msa0309930:intron | 30.0% | |
| CCAATTGCATAAAAATAGTC+TGG | + | chr2_4:4711827-4711846 | None:intergenic | 30.0% | |
| !!! | CCAGACTATTTTTATGCAAT+TGG | - | chr2_4:4711824-4711843 | Msa0309930:intron | 30.0% |
| !!! | GACTATTTTTATGCAATTGG+CGG | - | chr2_4:4711827-4711846 | Msa0309930:intron | 30.0% |
| !!! | ACTATTTTTATGCAATTGGC+GGG | - | chr2_4:4711828-4711847 | Msa0309930:intron | 30.0% |
| !!! | TTTATGCTTAGTTGGTTTTC+AGG | - | chr2_4:4712009-4712028 | Msa0309930:intron | 30.0% |
| TCTATATTTGTATGAGGTGA+TGG | - | chr2_4:4712074-4712093 | Msa0309930:intron | 30.0% | |
| CTATATTTGTATGAGGTGAT+GGG | - | chr2_4:4712075-4712094 | Msa0309930:intron | 30.0% | |
| GCAAATCAAACAAACTCTAT+AGG | + | chr2_4:4712101-4712120 | None:intergenic | 30.0% | |
| AGGTTTATATATGAAGGGTG+AGG | + | chr2_4:4709183-4709202 | None:intergenic | 35.0% | |
| !! | TGTTAGAAGGAAAAAGCGTT+AGG | + | chr2_4:4709280-4709299 | None:intergenic | 35.0% |
| !!! | AACGCTTTTTCCTTCTAACA+AGG | - | chr2_4:4709280-4709299 | Msa0309930:three_prime_UTR | 35.0% |
| !!! | GGTCTTTTTTGTTTCTGGAT+CGG | - | chr2_4:4709351-4709370 | Msa0309930:three_prime_UTR | 35.0% |
| GTTCTTTCTGTTGTATGCAT+AGG | - | chr2_4:4709764-4709783 | Msa0309930:CDS | 35.0% | |
| CTTGTACTATGTTTGTTTGC+AGG | - | chr2_4:4709946-4709965 | Msa0309930:CDS | 35.0% | |
| TGATGAAGCTCAGTCAAAAA+GGG | - | chr2_4:4710078-4710097 | Msa0309930:CDS | 35.0% | |
| CTATAGGATACTTCAATGTG+AGG | + | chr2_4:4710108-4710127 | None:intergenic | 35.0% | |
| ! | TTGAAGTATCCTATAGAGCA+TGG | - | chr2_4:4710112-4710131 | Msa0309930:CDS | 35.0% |
| CTAACTATACCATGCTCTAT+AGG | + | chr2_4:4710124-4710143 | None:intergenic | 35.0% | |
| AGCATGGTATAGTTAGTAAC+TGG | - | chr2_4:4710128-4710147 | Msa0309930:CDS | 35.0% | |
| GCATGGTATAGTTAGTAACT+GGG | - | chr2_4:4710129-4710148 | Msa0309930:CDS | 35.0% | |
| CATCAACAAAAACAAACCTG+TGG | + | chr2_4:4710359-4710378 | None:intergenic | 35.0% | |
| TGTGTAATAATGCTGTGAGT+TGG | - | chr2_4:4710439-4710458 | Msa0309930:CDS | 35.0% | |
| GTCTTTAAACTTCGGTTAAC+TGG | - | chr2_4:4710513-4710532 | Msa0309930:intron | 35.0% | |
| ! | TTGTAACGCTATTTCCTTCA+TGG | - | chr2_4:4710805-4710824 | Msa0309930:intron | 35.0% |
| AGAGCATACCCTTCATATAT+GGG | + | chr2_4:4710895-4710914 | None:intergenic | 35.0% | |
| ! | AAGAGCATACCCTTCATATA+TGG | + | chr2_4:4710896-4710915 | None:intergenic | 35.0% |
| ATCCAAACGAAGAATTGCAT+GGG | + | chr2_4:4710920-4710939 | None:intergenic | 35.0% | |
| CTAGTTTCTCTTTGACATCA+CGG | + | chr2_4:4711032-4711051 | None:intergenic | 35.0% | |
| CAAAGAGAAACTAGCATATG+TGG | - | chr2_4:4711038-4711057 | Msa0309930:CDS | 35.0% | |
| ATCAACATCACACTTCATGA+TGG | + | chr2_4:4711247-4711266 | None:intergenic | 35.0% | |
| GTGTGATGTTGATATTAGGA+AGG | - | chr2_4:4711254-4711273 | Msa0309930:CDS | 35.0% | |
| TCCAAGTAGCATGAAAATCA+AGG | - | chr2_4:4711365-4711384 | Msa0309930:CDS | 35.0% | |
| ! | ACCTTGATTTTCATGCTACT+TGG | + | chr2_4:4711369-4711388 | None:intergenic | 35.0% |
| AAGTAGCATGAAAATCAAGG+TGG | - | chr2_4:4711368-4711387 | Msa0309930:CDS | 35.0% | |
| GTCCATTCCATTATGACAAT+TGG | + | chr2_4:4711517-4711536 | None:intergenic | 35.0% | |
| ! | GACCATTTTATGGGATTCAT+GGG | - | chr2_4:4711534-4711553 | Msa0309930:CDS | 35.0% |
| ! | ACCATTTTATGGGATTCATG+GGG | - | chr2_4:4711535-4711554 | Msa0309930:CDS | 35.0% |
| AGATTCATCATATTCACCCT+TGG | + | chr2_4:4711597-4711616 | None:intergenic | 35.0% | |
| AAGGGTGAATATGATGAATC+TGG | - | chr2_4:4711596-4711615 | Msa0309930:intron | 35.0% | |
| AGGGTGAATATGATGAATCT+GGG | - | chr2_4:4711597-4711616 | Msa0309930:intron | 35.0% | |
| TGCCATATTTCAGTCAAGTT+TGG | - | chr2_4:4711694-4711713 | Msa0309930:intron | 35.0% | |
| ATGTTTCTTCTTTAGGTCCT+TGG | - | chr2_4:4711798-4711817 | Msa0309930:intron | 35.0% | |
| ! | TAAAAATAGTCTGGCTTCCA+AGG | + | chr2_4:4711818-4711837 | None:intergenic | 35.0% |
| TGAACTTTGTAGGTTCTGTT+TGG | - | chr2_4:4711858-4711877 | Msa0309930:intron | 35.0% | |
| TTCATGCTGGTCATGAATTT+AGG | - | chr2_4:4711903-4711922 | Msa0309930:intron | 35.0% | |
| ! | ATATCTATTTCTCCCAGACA+GGG | - | chr2_4:4711958-4711977 | Msa0309930:intron | 35.0% |
| AAAGTGTGTCAGAGAGAACA+AGG | + | chr2_4:4709203-4709222 | None:intergenic | 40.0% | |
| !! | AAAGCGTTAGGATTTTGCAG+CGG | + | chr2_4:4709268-4709287 | None:intergenic | 40.0% |
| TTGAAACGCACCTTGTTAGA+AGG | + | chr2_4:4709293-4709312 | None:intergenic | 40.0% | |
| GATCGGAAACATGCATATGA+AGG | + | chr2_4:4709618-4709637 | None:intergenic | 40.0% | |
| TACTATGTTTGTTTGCAGGC+TGG | - | chr2_4:4709950-4709969 | Msa0309930:CDS | 40.0% | |
| GTGATGAAGCTCAGTCAAAA+AGG | - | chr2_4:4710077-4710096 | Msa0309930:CDS | 40.0% | |
| GATGAAGCTCAGTCAAAAAG+GGG | - | chr2_4:4710079-4710098 | Msa0309930:CDS | 40.0% | |
| AGTTAGTAACTGGGACGATA+TGG | - | chr2_4:4710138-4710157 | Msa0309930:CDS | 40.0% | |
| GGGACGATATGGAAAAGATT+TGG | - | chr2_4:4710149-4710168 | Msa0309930:CDS | 40.0% | |
| !! | CTATTGGCTTTAGGATTGAG+TGG | + | chr2_4:4710241-4710260 | None:intergenic | 40.0% |
| ! | CTGGGTCATCTTTTCTCTAT+TGG | + | chr2_4:4710257-4710276 | None:intergenic | 40.0% |
| TGGATTGCAACATACATTGC+AGG | + | chr2_4:4710304-4710323 | None:intergenic | 40.0% | |
| TGCAATGTATGTTGCAATCC+AGG | - | chr2_4:4710303-4710322 | Msa0309930:CDS | 40.0% | |
| ACTGGCATACAGAGATAAGA+CGG | + | chr2_4:4710329-4710348 | None:intergenic | 40.0% | |
| GTCTTGAAACTTTGGTTAGC+TGG | - | chr2_4:4710596-4710615 | Msa0309930:intron | 40.0% | |
| ! | GTAGGTATTGTGCTTGATTC+TGG | - | chr2_4:4710847-4710866 | Msa0309930:intron | 40.0% |
| ATTGTGCTTGATTCTGGTGA+TGG | - | chr2_4:4710853-4710872 | Msa0309930:intron | 40.0% | |
| ACACAGTGCCCATATATGAA+GGG | - | chr2_4:4710884-4710903 | Msa0309930:intron | 40.0% | |
| TCCAAACGAAGAATTGCATG+GGG | + | chr2_4:4710919-4710938 | None:intergenic | 40.0% | |
| GATCCAAACGAAGAATTGCA+TGG | + | chr2_4:4710921-4710940 | None:intergenic | 40.0% | |
| ATTCTTCGTTTGGATCTTGC+TGG | - | chr2_4:4710925-4710944 | Msa0309930:intron | 40.0% | |
| TTCTTCGTTTGGATCTTGCT+GGG | - | chr2_4:4710926-4710945 | Msa0309930:intron | 40.0% | |
| ! | GCGTGATTTAACAGAGTACT+TGG | - | chr2_4:4710948-4710967 | Msa0309930:intron | 40.0% |
| GTGAAAATTCTCACTGAGAG+AGG | - | chr2_4:4710970-4710989 | Msa0309930:intron | 40.0% | |
| ATTGTTATGACCTGTCCATC+AGG | + | chr2_4:4711132-4711151 | None:intergenic | 40.0% | |
| GATGGACAGGTCATAACAAT+AGG | - | chr2_4:4711132-4711151 | Msa0309930:CDS | 40.0% | |
| GCTTCCATACCAATTAGAGA+AGG | + | chr2_4:4711195-4711214 | None:intergenic | 40.0% | |
| CTAATTGGTATGGAAGCTAC+TGG | - | chr2_4:4711198-4711217 | Msa0309930:CDS | 40.0% | |
| GGAAATATTGTGCTTAGTGG+AGG | - | chr2_4:4711285-4711304 | Msa0309930:CDS | 40.0% | |
| !! | CACTGATTTCCTTGCTCATA+CGG | + | chr2_4:4711338-4711357 | None:intergenic | 40.0% |
| ATCACTCAGTACCTTTCAAC+AGG | - | chr2_4:4711443-4711462 | Msa0309930:intron | 40.0% | |
| GTGAGTTCATACCTGTTGAA+AGG | + | chr2_4:4711457-4711476 | None:intergenic | 40.0% | |
| ! | GGACCATTTTATGGGATTCA+TGG | - | chr2_4:4711533-4711552 | Msa0309930:CDS | 40.0% |
| ACCCCATGAATCCCATAAAA+TGG | + | chr2_4:4711539-4711558 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAATTGGCGGGA+TGG | - | chr2_4:4711832-4711851 | Msa0309930:intron | 40.0% |
| ! | GGGATGGTATTGAACTTTGT+AGG | - | chr2_4:4711848-4711867 | Msa0309930:intron | 40.0% |
| GAATTTAGGTGCCTCTAGTT+AGG | - | chr2_4:4711917-4711936 | Msa0309930:intron | 40.0% | |
| ! | CATATCTATTTCTCCCAGAC+AGG | - | chr2_4:4711957-4711976 | Msa0309930:intron | 40.0% |
| TGACTCAAAATTCCCTGTCT+GGG | + | chr2_4:4711973-4711992 | None:intergenic | 40.0% | |
| ATGACTCAAAATTCCCTGTC+TGG | + | chr2_4:4711974-4711993 | None:intergenic | 40.0% | |
| ! | TAGGATTTTGCAGCGGAGAA+CGG | + | chr2_4:4709261-4709280 | None:intergenic | 45.0% |
| !!! | AAGCTGCTTTTTGATGCACC+TGG | - | chr2_4:4709487-4709506 | Msa0309930:three_prime_UTR | 45.0% |
| CAACCTCTTGTCGTTGACAA+TGG | - | chr2_4:4709817-4709836 | Msa0309930:intron | 45.0% | |
| GTTCCATTGTCAACGACAAG+AGG | + | chr2_4:4709823-4709842 | None:intergenic | 45.0% | |
| CTTGTCGTTGACAATGGAAC+TGG | - | chr2_4:4709823-4709842 | Msa0309930:intron | 45.0% | |
| CGTTGACAATGGAACTGGAA+TGG | - | chr2_4:4709828-4709847 | Msa0309930:intron | 45.0% | |
| CAATGGAACTGGAATGGTCA+AGG | - | chr2_4:4709834-4709853 | Msa0309930:intron | 45.0% | |
| GTCATACCGGTGTAATGGTT+GGG | - | chr2_4:4710029-4710048 | Msa0309930:CDS | 45.0% | |
| GGTCAGAAGGATGCTTATGT+AGG | - | chr2_4:4710055-4710074 | Msa0309930:CDS | 45.0% | |
| ! | TTTAGGATTGAGTGGAGCCT+CGG | + | chr2_4:4710233-4710252 | None:intergenic | 45.0% |
| GTCTTATCTCTGTATGCCAG+TGG | - | chr2_4:4710328-4710347 | Msa0309930:CDS | 45.0% | |
| CACACAGTGCCCATATATGA+AGG | - | chr2_4:4710883-4710902 | Msa0309930:intron | 45.0% | |
| TCCCCATGCAATTCTTCGTT+TGG | - | chr2_4:4710915-4710934 | Msa0309930:intron | 45.0% | |
| GACAATTTCCTTCTCAGCTG+AGG | + | chr2_4:4711010-4711029 | None:intergenic | 45.0% | |
| !! | AGAAGGCTGGAAGAGTACTT+CGG | + | chr2_4:4711178-4711197 | None:intergenic | 45.0% |
| CTCTTCCAGCCTTCTCTAAT+TGG | - | chr2_4:4711183-4711202 | Msa0309930:CDS | 45.0% | |
| CCATACCAATTAGAGAAGGC+TGG | + | chr2_4:4711191-4711210 | None:intergenic | 45.0% | |
| CCAGCCTTCTCTAATTGGTA+TGG | - | chr2_4:4711188-4711207 | Msa0309930:CDS | 45.0% | |
| GGAGGTTCTACTATGTTTCC+TGG | - | chr2_4:4711303-4711322 | Msa0309930:CDS | 45.0% | |
| AATTGCTGACCGTATGAGCA+AGG | - | chr2_4:4711326-4711345 | Msa0309930:CDS | 45.0% | |
| ! | AGGAAGTACAGTGTCTGGAT+TGG | - | chr2_4:4711405-4711424 | Msa0309930:intron | 45.0% |
| ! | AAGTACAGTGTCTGGATTGG+TGG | - | chr2_4:4711408-4711427 | Msa0309930:intron | 45.0% |
| !! | AGTACAGTGTCTGGATTGGT+GGG | - | chr2_4:4711409-4711428 | Msa0309930:intron | 45.0% |
| TATGCAGATGTGGATCTCCA+AGG | - | chr2_4:4711577-4711596 | Msa0309930:exon | 45.0% | |
| ATGCAGATGTGGATCTCCAA+GGG | - | chr2_4:4711578-4711597 | Msa0309930:intron | 45.0% | |
| CACTTTCGGTGAACAATAGC+TGG | + | chr2_4:4711623-4711642 | None:intergenic | 45.0% | |
| !! | ACCGAAAGTGCTTCTGAGTT+GGG | - | chr2_4:4711633-4711652 | Msa0309930:intron | 45.0% |
| !! | ACCCAACTCAGAAGCACTTT+CGG | + | chr2_4:4711637-4711656 | None:intergenic | 45.0% |
| TTTAGGTGCCTCTAGTTAGG+AGG | - | chr2_4:4711920-4711939 | Msa0309930:intron | 45.0% | |
| !!! | TGTTTGCAGGCTGGTTTTGC+AGG | - | chr2_4:4709959-4709978 | Msa0309930:CDS | 50.0% |
| ! | TTGCAGGTGATGATGCTCCT+AGG | - | chr2_4:4709975-4709994 | Msa0309930:CDS | 50.0% |
| ! | TGCAGGTGATGATGCTCCTA+GGG | - | chr2_4:4709976-4709995 | Msa0309930:CDS | 50.0% |
| CCCAATGATACTGGGGAACA+CGG | + | chr2_4:4710002-4710021 | None:intergenic | 50.0% | |
| CCGTGTTCCCCAGTATCATT+GGG | - | chr2_4:4709999-4710018 | Msa0309930:CDS | 50.0% | |
| ACCTCGTCATACCGGTGTAA+TGG | - | chr2_4:4710024-4710043 | Msa0309930:CDS | 50.0% | |
| ACCATTACACCGGTATGACG+AGG | + | chr2_4:4710028-4710047 | None:intergenic | 50.0% | |
| CGTCATACCGGTGTAATGGT+TGG | - | chr2_4:4710028-4710047 | Msa0309930:CDS | 50.0% | |
| TACCGGTGTAATGGTTGGGA+TGG | - | chr2_4:4710033-4710052 | Msa0309930:CDS | 50.0% | |
| ACCGGTGTAATGGTTGGGAT+GGG | - | chr2_4:4710034-4710053 | Msa0309930:CDS | 50.0% | |
| ACCCATCCCAACCATTACAC+CGG | + | chr2_4:4710038-4710057 | None:intergenic | 50.0% | |
| AATGGTTGGGATGGGTCAGA+AGG | - | chr2_4:4710042-4710061 | Msa0309930:CDS | 50.0% | |
| ! | AGAAGCACAGGGTGTTCTTC+TGG | + | chr2_4:4710208-4710227 | None:intergenic | 50.0% |
| CATACAGAGATAAGACGGCC+TGG | + | chr2_4:4710324-4710343 | None:intergenic | 50.0% | |
| !! | CTTCTCAGCTGAGGTACTGA+AGG | + | chr2_4:4711001-4711020 | None:intergenic | 50.0% |
| CTTCAGTACCTCAGCTGAGA+AGG | - | chr2_4:4710999-4711018 | Msa0309930:intron | 50.0% | |
| CAACTCGTAGCTCTTCTCCA+CGG | + | chr2_4:4711109-4711128 | None:intergenic | 50.0% | |
| AAGAGCTACGAGTTGCCTGA+TGG | - | chr2_4:4711114-4711133 | Msa0309930:CDS | 50.0% | |
| !! | AAGGCTGGAAGAGTACTTCG+GGG | + | chr2_4:4711176-4711195 | None:intergenic | 50.0% |
| !! | GAAGGCTGGAAGAGTACTTC+GGG | + | chr2_4:4711177-4711196 | None:intergenic | 50.0% |
| CTCATACGGTCAGCAATTCC+AGG | + | chr2_4:4711324-4711343 | None:intergenic | 50.0% | |
| ACACTGTACTTCCTCTCAGG+AGG | + | chr2_4:4711399-4711418 | None:intergenic | 50.0% | |
| CAGACACTGTACTTCCTCTC+AGG | + | chr2_4:4711402-4711421 | None:intergenic | 50.0% | |
| ! | CTGAGAGGAAGTACAGTGTC+TGG | - | chr2_4:4711400-4711419 | Msa0309930:intron | 50.0% |
| !! | CTGGATTGGTGGGTCTATCT+TGG | - | chr2_4:4711419-4711438 | Msa0309930:intron | 50.0% |
| !! | CACCGAAAGTGCTTCTGAGT+TGG | - | chr2_4:4711632-4711651 | Msa0309930:intron | 50.0% |
| ATCACCCTCCTCCTAACTAG+AGG | + | chr2_4:4711931-4711950 | None:intergenic | 50.0% | |
| !! | CGAGGAGTGGGAAGTGTTAC+AGG | + | chr2_4:4709226-4709245 | None:intergenic | 55.0% |
| ! | GATTTTGCAGCGGAGAACGG+TGG | + | chr2_4:4709258-4709277 | None:intergenic | 55.0% |
| GCCGTGTTCCCCAGTATCAT+TGG | - | chr2_4:4709998-4710017 | Msa0309930:CDS | 55.0% | |
| GAGGTCGCCCAATGATACTG+GGG | + | chr2_4:4710009-4710028 | None:intergenic | 55.0% | |
| CGAGGTCGCCCAATGATACT+GGG | + | chr2_4:4710010-4710029 | None:intergenic | 55.0% | |
| ACGAGGTCGCCCAATGATAC+TGG | + | chr2_4:4710011-4710030 | None:intergenic | 55.0% | |
| ATTGGGCGACCTCGTCATAC+CGG | - | chr2_4:4710016-4710035 | Msa0309930:CDS | 55.0% | |
| ACACCCTGTGCTTCTTACCG+AGG | - | chr2_4:4710213-4710232 | Msa0309930:CDS | 55.0% | |
| ! | GAGCCTCGGTAAGAAGCACA+GGG | + | chr2_4:4710219-4710238 | None:intergenic | 55.0% |
| TATGCCAGTGGACGTACCAC+AGG | - | chr2_4:4710340-4710359 | Msa0309930:CDS | 55.0% | |
| CAAACCTGTGGTACGTCCAC+TGG | + | chr2_4:4710347-4710366 | None:intergenic | 55.0% | |
| ! | TACCAAGAGTAGCTCTGCCG+TGG | - | chr2_4:4711089-4711108 | Msa0309930:CDS | 55.0% |
| ! | CTACGAGTTGCCTGATGGAC+AGG | - | chr2_4:4711119-4711138 | Msa0309930:CDS | 55.0% |
| TTCGGGGCAACGGAATCTCT+CGG | + | chr2_4:4711160-4711179 | None:intergenic | 55.0% | |
| !! | GGAAGAGTACTTCGGGGCAA+CGG | + | chr2_4:4711170-4711189 | None:intergenic | 55.0% |
| AGGTGCCTCTAGTTAGGAGG+AGG | - | chr2_4:4711923-4711942 | Msa0309930:intron | 55.0% | |
| GGTGCCTCTAGTTAGGAGGA+GGG | - | chr2_4:4711924-4711943 | Msa0309930:intron | 55.0% | |
| TGGAGAAGCGAGCGAGGAGT+GGG | + | chr2_4:4709238-4709257 | None:intergenic | 60.0% | |
| ATACTGGGGAACACGGCCCT+AGG | + | chr2_4:4709995-4710014 | None:intergenic | 60.0% | |
| ! | GGAGCCTCGGTAAGAAGCAC+AGG | + | chr2_4:4710220-4710239 | None:intergenic | 60.0% |
| CTCCACGGCAGAGCTACTCT+TGG | + | chr2_4:4711094-4711113 | None:intergenic | 60.0% | |
| AGGTGGTTGCACCTCCTGAG+AGG | - | chr2_4:4711385-4711404 | Msa0309930:CDS | 60.0% | |
| GTGGAGAAGCGAGCGAGGAG+TGG | + | chr2_4:4709239-4709258 | None:intergenic | 65.0% | |
| GAACGGTGGAGAAGCGAGCG+AGG | + | chr2_4:4709244-4709263 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4709177 | 4712205 | 4709177 | ID=Msa0309930;Name=Msa0309930 |
| chr2_4 | mRNA | 4709177 | 4712205 | 4709177 | ID=Msa0309930-mRNA-1;Parent=Msa0309930;Name=Msa0309930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=135|1|1|1|0.75|0.6|5|556|377 |
| chr2_4 | exon | 4709177 | 4709798 | 4709177 | ID=Msa0309930-mRNA-1:exon:1615;Parent=Msa0309930-mRNA-1 |
| chr2_4 | exon | 4709918 | 4710531 | 4709918 | ID=Msa0309930-mRNA-1:exon:1614;Parent=Msa0309930-mRNA-1 |
| chr2_4 | exon | 4711021 | 4711414 | 4711021 | ID=Msa0309930-mRNA-1:exon:1613;Parent=Msa0309930-mRNA-1 |
| chr2_4 | exon | 4711527 | 4711596 | 4711527 | ID=Msa0309930-mRNA-1:exon:1612;Parent=Msa0309930-mRNA-1 |
| chr2_4 | exon | 4712081 | 4712205 | 4712081 | ID=Msa0309930-mRNA-1:exon:1611;Parent=Msa0309930-mRNA-1 |
| chr2_4 | five_prime_UTR | 4712081 | 4712205 | 4712081 | ID=Msa0309930-mRNA-1:five_prime_utr;Parent=Msa0309930-mRNA-1 |
| chr2_4 | five_prime_UTR | 4711587 | 4711596 | 4711587 | ID=Msa0309930-mRNA-1:five_prime_utr;Parent=Msa0309930-mRNA-1 |
| chr2_4 | CDS | 4711527 | 4711586 | 4711527 | ID=Msa0309930-mRNA-1:cds;Parent=Msa0309930-mRNA-1 |
| chr2_4 | CDS | 4711021 | 4711414 | 4711021 | ID=Msa0309930-mRNA-1:cds;Parent=Msa0309930-mRNA-1 |
| chr2_4 | CDS | 4709918 | 4710531 | 4709918 | ID=Msa0309930-mRNA-1:cds;Parent=Msa0309930-mRNA-1 |
| chr2_4 | CDS | 4709733 | 4709798 | 4709733 | ID=Msa0309930-mRNA-1:cds;Parent=Msa0309930-mRNA-1 |
| chr2_4 | three_prime_UTR | 4709177 | 4709732 | 4709177 | ID=Msa0309930-mRNA-1:three_prime_utr;Parent=Msa0309930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
