Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382510 | XP_003603398.2 | 97.504 | 641 | 16 | 0 | 1 | 641 | 1 | 641 | 0.0 | 1253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382510 | sp|Q9SKK0|EBF1_ARATH | 56.719 | 640 | 264 | 6 | 1 | 640 | 1 | 627 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382510 | G7JB21 | 97.504 | 641 | 16 | 0 | 1 | 641 | 1 | 641 | 0.0 | 1253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197170 | Msa0382510 | 0.836607 | 8.473530e-57 | -8.615850e-47 |
| Msa0198990 | Msa0382510 | 0.800862 | 1.180944e-48 | -8.615850e-47 |
| Msa0382510 | Msa0426490 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0382510 | Msa0432340 | 0.929940 | 3.371974e-93 | -8.615850e-47 |
| Msa0382510 | Msa0480900 | -0.808608 | 2.848958e-50 | -8.615850e-47 |
| Msa0382510 | Msa0483980 | -0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0382510 | Msa0519070 | -0.800657 | 1.300467e-48 | -8.615850e-47 |
| Msa0382510 | Msa0525190 | 0.908414 | 1.755849e-81 | -8.615850e-47 |
| Msa0382510 | Msa0744010 | -0.807775 | 4.286008e-50 | -8.615850e-47 |
| Msa0382510 | Msa0788160 | -0.806529 | 7.872018e-50 | -8.615850e-47 |
| Msa0382510 | Msa0789130 | 0.956046 | 7.397094e-114 | -8.615850e-47 |
| Msa0382510 | Msa0825360 | -0.807415 | 5.111252e-50 | -8.615850e-47 |
| Msa0382510 | Msa0873910 | 0.800772 | 1.232155e-48 | -8.615850e-47 |
| Msa0382510 | Msa0908270 | -0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa0382510 | Msa0908350 | -0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0382510 | Msa0908690 | -0.802899 | 4.507154e-49 | -8.615850e-47 |
| Msa0382510 | Msa0911180 | -0.804832 | 1.787560e-49 | -8.615850e-47 |
| Msa0382510 | Msa0911220 | -0.808678 | 2.751817e-50 | -8.615850e-47 |
| Msa0382510 | Msa0935840 | -0.805935 | 1.049610e-49 | -8.615850e-47 |
| Msa0382510 | Msa0973010 | -0.809141 | 2.191416e-50 | -8.615850e-47 |
| Msa0382510 | Msa1062060 | 0.821302 | 4.340296e-53 | -8.615850e-47 |
| Msa0382510 | Msa1080130 | 0.808227 | 3.435393e-50 | -8.615850e-47 |
| Msa0382510 | Msa1087070 | -0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0382510 | Msa1087080 | -0.813488 | 2.495248e-51 | -8.615850e-47 |
| Msa0382510 | Msa1107220 | 0.803982 | 2.688265e-49 | -8.615850e-47 |
| Msa0382510 | Msa1150760 | 0.807090 | 5.989898e-50 | -8.615850e-47 |
| Msa0382510 | Msa1215740 | 0.820036 | 8.478771e-53 | -8.615850e-47 |
| Msa0382510 | Msa1331570 | -0.822967 | 1.784185e-53 | -8.615850e-47 |
| Msa0382510 | Msa1332420 | 0.817039 | 4.055248e-52 | -8.615850e-47 |
| Msa0382510 | Msa1333880 | 0.814583 | 1.431106e-51 | -8.615850e-47 |
| Msa0382510 | Msa1354360 | -0.800565 | 1.357835e-48 | -8.615850e-47 |
| Msa0382510 | Msa1354370 | -0.803947 | 2.733764e-49 | -8.615850e-47 |
| Msa0382510 | Msa1354520 | -0.801275 | 9.721776e-49 | -8.615850e-47 |
| Msa0382510 | Msa1354650 | -0.802360 | 5.822323e-49 | -8.615850e-47 |
| Msa0382510 | Msa1354780 | -0.800895 | 1.162826e-48 | -8.615850e-47 |
| Msa0382510 | Msa1391130 | -0.800444 | 1.437099e-48 | -8.615850e-47 |
| Msa0382510 | Msa1391260 | -0.800602 | 1.334752e-48 | -8.615850e-47 |
| Msa0241750 | Msa0382510 | 0.813779 | 2.153933e-51 | -8.615850e-47 |
| Msa0279810 | Msa0382510 | 0.803630 | 3.179995e-49 | -8.615850e-47 |
| Msa0308750 | Msa0382510 | 0.829447 | 5.123001e-55 | -8.615850e-47 |
| Msa0316740 | Msa0382510 | 0.833953 | 3.966463e-56 | -8.615850e-47 |
| Msa0319220 | Msa0382510 | 0.800573 | 1.352495e-48 | -8.615850e-47 |
| Msa0345050 | Msa0382510 | 0.817569 | 3.081050e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382510 | MtrunA17_Chr3g0137771 | 97.504 | 641 | 16 | 0 | 1 | 641 | 1 | 641 | 0.0 | 1253 |
| Msa0382510 | MtrunA17_Chr1g0149351 | 66.822 | 645 | 206 | 4 | 1 | 640 | 1 | 642 | 0.0 | 849 |
| Msa0382510 | MtrunA17_Chr4g0063841 | 55.167 | 600 | 265 | 3 | 44 | 640 | 34 | 632 | 0.0 | 602 |
| Msa0382510 | MtrunA17_Chr4g0063861 | 52.442 | 389 | 184 | 1 | 252 | 640 | 2 | 389 | 2.19e-124 | 373 |
| Msa0382510 | MtrunA17_Chr4g0063861 | 23.902 | 410 | 247 | 11 | 178 | 555 | 6 | 382 | 1.33e-14 | 76.3 |
| Msa0382510 | MtrunA17_Chr4g0063851 | 47.619 | 189 | 87 | 4 | 44 | 232 | 37 | 213 | 1.68e-41 | 150 |
| Msa0382510 | MtrunA17_Chr2g0286991 | 25.316 | 553 | 356 | 15 | 71 | 579 | 11 | 550 | 1.12e-35 | 142 |
| Msa0382510 | MtrunA17_Chr2g0286991 | 27.574 | 272 | 172 | 3 | 172 | 419 | 305 | 575 | 2.17e-23 | 105 |
| Msa0382510 | MtrunA17_Chr2g0286991 | 26.296 | 270 | 178 | 5 | 143 | 406 | 334 | 588 | 8.42e-19 | 90.5 |
| Msa0382510 | MtrunA17_Chr4g0004901 | 27.565 | 497 | 302 | 17 | 137 | 605 | 180 | 646 | 1.54e-28 | 121 |
| Msa0382510 | MtrunA17_Chr4g0004901 | 25.460 | 326 | 208 | 8 | 174 | 499 | 367 | 657 | 1.80e-20 | 96.3 |
| Msa0382510 | MtrunA17_Chr4g0004901 | 26.199 | 271 | 164 | 6 | 135 | 404 | 383 | 618 | 1.08e-15 | 80.9 |
| Msa0382510 | MtrunA17_Chr1g0212071 | 27.411 | 394 | 256 | 12 | 69 | 445 | 18 | 398 | 2.14e-27 | 115 |
| Msa0382510 | MtrunA17_Chr1g0212071 | 23.724 | 333 | 222 | 5 | 304 | 634 | 95 | 397 | 5.22e-17 | 84.0 |
| Msa0382510 | MtrunA17_Chr1g0212071 | 28.352 | 261 | 153 | 7 | 140 | 372 | 145 | 399 | 2.31e-15 | 78.6 |
| Msa0382510 | MtrunA17_Chr7g0272131 | 26.450 | 431 | 277 | 12 | 169 | 571 | 190 | 608 | 6.37e-24 | 107 |
| Msa0382510 | MtrunA17_Chr7g0272131 | 25.316 | 474 | 263 | 17 | 205 | 623 | 94 | 531 | 5.69e-20 | 94.4 |
| Msa0382510 | MtrunA17_Chr7g0272131 | 23.473 | 311 | 207 | 5 | 174 | 459 | 350 | 654 | 2.55e-16 | 82.8 |
| Msa0382510 | MtrunA17_Chr1g0176031 | 30.769 | 247 | 154 | 9 | 343 | 585 | 107 | 340 | 2.01e-20 | 93.2 |
| Msa0382510 | MtrunA17_Chr1g0176031 | 27.119 | 236 | 159 | 5 | 142 | 372 | 89 | 316 | 7.33e-14 | 73.6 |
| Msa0382510 | MtrunA17_Chr1g0176031 | 26.016 | 246 | 163 | 6 | 172 | 407 | 90 | 326 | 9.41e-13 | 70.1 |
| Msa0382510 | MtrunA17_Chr1g0176031 | 22.924 | 301 | 173 | 7 | 213 | 484 | 79 | 349 | 6.76e-11 | 64.3 |
| Msa0382510 | MtrunA17_Chr8g0347711 | 26.984 | 378 | 238 | 10 | 66 | 423 | 10 | 369 | 3.86e-20 | 93.2 |
| Msa0382510 | MtrunA17_Chr8g0347711 | 21.858 | 366 | 216 | 7 | 191 | 549 | 59 | 361 | 1.72e-11 | 66.6 |
| Msa0382510 | MtrunA17_Chr1g0150971 | 24.494 | 445 | 226 | 15 | 174 | 580 | 327 | 699 | 2.11e-16 | 83.6 |
| Msa0382510 | MtrunA17_Chr3g0125671 | 25.926 | 216 | 107 | 3 | 196 | 411 | 111 | 273 | 2.25e-16 | 81.3 |
| Msa0382510 | MtrunA17_Chr4g0008501 | 22.488 | 418 | 280 | 10 | 178 | 574 | 158 | 552 | 3.01e-16 | 82.4 |
| Msa0382510 | MtrunA17_Chr1g0159531 | 23.404 | 282 | 147 | 4 | 196 | 461 | 99 | 327 | 6.82e-16 | 79.7 |
| Msa0382510 | MtrunA17_Chr1g0159531 | 31.507 | 146 | 73 | 3 | 141 | 262 | 128 | 270 | 6.75e-12 | 67.4 |
| Msa0382510 | MtrunA17_Chr4g0002671 | 25.236 | 424 | 272 | 16 | 173 | 571 | 127 | 530 | 1.87e-15 | 79.7 |
| Msa0382510 | MtrunA17_Chr4g0002671 | 22.393 | 585 | 362 | 20 | 68 | 633 | 3 | 514 | 2.55e-13 | 73.2 |
| Msa0382510 | MtrunA17_Chr4g0073771 | 30.726 | 179 | 108 | 5 | 227 | 403 | 102 | 266 | 1.14e-13 | 72.4 |
| Msa0382510 | MtrunA17_Chr5g0446541 | 22.355 | 501 | 299 | 14 | 178 | 633 | 149 | 604 | 1.31e-13 | 73.9 |
| Msa0382510 | MtrunA17_Chr1g0150991 | 24.276 | 449 | 273 | 15 | 173 | 577 | 162 | 587 | 1.42e-13 | 73.9 |
| Msa0382510 | MtrunA17_Chr1g0152951 | 23.978 | 367 | 199 | 12 | 225 | 580 | 137 | 434 | 1.10e-11 | 67.8 |
| Msa0382510 | MtrunA17_Chr3g0077831 | 24.332 | 374 | 214 | 11 | 200 | 514 | 192 | 555 | 4.46e-11 | 65.9 |
| Msa0382510 | MtrunA17_Chr4g0076081 | 21.678 | 429 | 280 | 11 | 178 | 564 | 133 | 547 | 8.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382510 | AT2G25490.1 | 56.719 | 640 | 264 | 6 | 1 | 640 | 1 | 627 | 0.0 | 677 |
| Msa0382510 | AT5G25350.1 | 52.100 | 643 | 286 | 6 | 1 | 641 | 1 | 623 | 0.0 | 612 |
| Msa0382510 | AT4G15475.1 | 28.007 | 582 | 378 | 19 | 71 | 641 | 11 | 562 | 1.80e-47 | 177 |
| Msa0382510 | AT4G15475.1 | 27.762 | 353 | 247 | 6 | 174 | 526 | 231 | 575 | 2.95e-31 | 129 |
| Msa0382510 | AT4G15475.1 | 26.686 | 341 | 239 | 6 | 123 | 458 | 252 | 586 | 1.70e-29 | 124 |
| Msa0382510 | AT4G15475.1 | 30.769 | 208 | 131 | 5 | 178 | 380 | 389 | 588 | 6.00e-22 | 100 |
| Msa0382510 | AT5G27920.1 | 29.083 | 447 | 275 | 16 | 173 | 604 | 158 | 577 | 1.91e-28 | 121 |
| Msa0382510 | AT5G27920.1 | 26.351 | 296 | 185 | 7 | 200 | 495 | 338 | 600 | 5.11e-14 | 75.9 |
| Msa0382510 | AT5G27920.1 | 25.381 | 394 | 251 | 13 | 265 | 627 | 65 | 446 | 3.93e-12 | 69.7 |
| Msa0382510 | AT5G23340.1 | 28.881 | 277 | 189 | 6 | 304 | 577 | 85 | 356 | 4.53e-25 | 108 |
| Msa0382510 | AT5G23340.1 | 25.201 | 373 | 261 | 11 | 69 | 433 | 8 | 370 | 5.29e-23 | 102 |
| Msa0382510 | AT5G23340.1 | 25.442 | 283 | 181 | 3 | 349 | 630 | 76 | 329 | 1.42e-16 | 82.8 |
| Msa0382510 | AT5G23340.1 | 29.213 | 178 | 123 | 3 | 456 | 632 | 103 | 278 | 3.53e-14 | 75.5 |
| Msa0382510 | AT5G01720.1 | 23.232 | 396 | 249 | 6 | 176 | 548 | 241 | 604 | 2.36e-23 | 105 |
| Msa0382510 | AT5G01720.1 | 26.096 | 479 | 310 | 15 | 174 | 623 | 85 | 548 | 4.56e-19 | 92.0 |
| Msa0382510 | AT5G01720.1 | 22.593 | 270 | 175 | 6 | 173 | 415 | 315 | 577 | 8.12e-14 | 75.1 |
| Msa0382510 | AT1G77000.2 | 25.000 | 216 | 109 | 2 | 196 | 411 | 100 | 262 | 8.93e-16 | 79.7 |
| Msa0382510 | AT1G77000.1 | 25.000 | 216 | 109 | 2 | 196 | 411 | 100 | 262 | 8.93e-16 | 79.7 |
| Msa0382510 | AT1G21410.2 | 24.537 | 216 | 110 | 2 | 196 | 411 | 100 | 262 | 9.60e-16 | 79.7 |
| Msa0382510 | AT1G21410.1 | 24.537 | 216 | 110 | 2 | 196 | 411 | 100 | 262 | 9.60e-16 | 79.7 |
| Msa0382510 | AT1G55590.1 | 23.767 | 223 | 165 | 3 | 172 | 392 | 296 | 515 | 2.41e-14 | 76.6 |
| Msa0382510 | AT3G58530.1 | 26.866 | 268 | 159 | 7 | 343 | 607 | 109 | 342 | 3.43e-14 | 75.1 |
| Msa0382510 | AT3G58530.1 | 23.140 | 242 | 148 | 4 | 152 | 393 | 102 | 305 | 2.84e-12 | 68.9 |
| Msa0382510 | AT4G33210.1 | 24.015 | 533 | 301 | 20 | 128 | 616 | 321 | 793 | 4.43e-14 | 76.3 |
| Msa0382510 | AT1G47056.1 | 28.028 | 289 | 148 | 9 | 345 | 580 | 130 | 411 | 3.75e-13 | 72.8 |
| Msa0382510 | AT1G47056.1 | 33.523 | 176 | 100 | 8 | 117 | 286 | 244 | 408 | 8.09e-13 | 71.6 |
| Msa0382510 | AT1G47056.1 | 23.210 | 461 | 292 | 17 | 43 | 490 | 15 | 426 | 2.92e-11 | 66.6 |
| Msa0382510 | AT3G07550.1 | 25.193 | 389 | 242 | 9 | 61 | 423 | 8 | 373 | 4.26e-13 | 72.0 |
| Msa0382510 | AT3G07550.2 | 25.193 | 389 | 242 | 9 | 61 | 423 | 8 | 373 | 4.26e-13 | 72.0 |
| Msa0382510 | AT4G07400.1 | 38.211 | 123 | 73 | 3 | 160 | 282 | 344 | 463 | 8.85e-12 | 68.6 |
| Msa0382510 | AT3G07550.3 | 24.936 | 389 | 216 | 11 | 61 | 423 | 8 | 346 | 2.77e-11 | 66.2 |
| Msa0382510 | AT1G80630.1 | 23.000 | 400 | 239 | 12 | 198 | 567 | 148 | 508 | 3.13e-11 | 67.0 |
Find 214 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGAAGTCTTTCACTCTT+TGG | 0.100387 | 3_1:-85147658 | Msa0382510:CDS |
| CCTGAATTTAGGTTTCTTTC+TGG | 0.107587 | 3_1:-85146011 | Msa0382510:three_prime_UTR |
| CAGATTTCCTTTCAATTATA+AGG | 0.192891 | 3_1:+85146115 | None:intergenic |
| GATTACTCACTAGCAGTTAT+TGG | 0.193905 | 3_1:-85147305 | Msa0382510:CDS |
| TGCCATAGGATTACCCAATT+TGG | 0.212481 | 3_1:-85147002 | Msa0382510:CDS |
| AGTTACTGGGTCCTGAATTT+AGG | 0.217246 | 3_1:-85146022 | Msa0382510:three_prime_UTR |
| TGACACCGGCAACCCCAAAT+TGG | 0.224942 | 3_1:+85146988 | None:intergenic |
| TCTGAAGTCTTTCACTCTTT+GGG | 0.233451 | 3_1:-85147657 | Msa0382510:CDS |
| CAATCTGGATGTACTTTCTT+TGG | 0.236470 | 3_1:-85146472 | Msa0382510:CDS |
| CTTGGAGTGCTAAACCTTAA+TGG | 0.242738 | 3_1:-85146624 | Msa0382510:CDS |
| TCGAAGCTTGGAGGGGAAAA+AGG | 0.250888 | 3_1:-85147819 | Msa0382510:CDS |
| TTTAGTCTTCTCTAGGGTTT+TGG | 0.251026 | 3_1:-85145734 | Msa0382510:three_prime_UTR |
| GTTGCTGCAGATTTCATTCT+TGG | 0.268042 | 3_1:+85147901 | None:intergenic |
| GCCATAGGATTACCCAATTT+GGG | 0.271797 | 3_1:-85147001 | Msa0382510:CDS |
| GTCCTTCAGGCAACCTTCTA+AGG | 0.271825 | 3_1:+85147984 | None:intergenic |
| TGAATAATGGTTTGTACTTT+TGG | 0.273013 | 3_1:-85145534 | Msa0382510:three_prime_UTR |
| TTATGAAAATTAATGAATAA+TGG | 0.284559 | 3_1:-85145547 | Msa0382510:three_prime_UTR |
| TGCCCTGGAGTAACAGATAT+TGG | 0.295544 | 3_1:-85147158 | Msa0382510:CDS |
| ACACAATCTCGAGGAGGATT+AGG | 0.296188 | 3_1:-85147761 | Msa0382510:CDS |
| AAACCTTAATGGTTGTAAAA+AGG | 0.296888 | 3_1:-85146613 | Msa0382510:CDS |
| TCAGTATGCAATAAAATATA+TGG | 0.312924 | 3_1:+85145502 | None:intergenic |
| ATCTGCAGCAACGCAAGTTC+TGG | 0.313753 | 3_1:-85147890 | Msa0382510:CDS |
| GACGGTGACAATCAAGAATT+TGG | 0.313887 | 3_1:-85147860 | Msa0382510:CDS |
| ATTGATACGGACCTTAGATT+TGG | 0.325991 | 3_1:+85147428 | None:intergenic |
| GATATCTATACCGCAGAATC+TGG | 0.326092 | 3_1:-85146282 | Msa0382510:three_prime_UTR |
| TTCACTGCTTCAGAGGTCTA+AGG | 0.330025 | 3_1:-85146733 | Msa0382510:CDS |
| CAACTAACGTCGCTCACAAT+TGG | 0.335014 | 3_1:-85147185 | Msa0382510:CDS |
| ATCTCTGAGAACATAGTTAC+TGG | 0.341161 | 3_1:-85146036 | Msa0382510:three_prime_UTR |
| TAATGGATGCTGAACATAAT+AGG | 0.341815 | 3_1:+85147366 | None:intergenic |
| AATTGTAGGCTCACAATTGA+TGG | 0.346716 | 3_1:+85147032 | None:intergenic |
| CTTCAGTGTCTTGAATTGAT+TGG | 0.348304 | 3_1:-85146786 | Msa0382510:CDS |
| TCAGAGGTCTAAGGCCAGTT+TGG | 0.348388 | 3_1:-85146724 | Msa0382510:CDS |
| TTCTTTGGCAGGTTGCTCAT+TGG | 0.352209 | 3_1:-85146457 | Msa0382510:CDS |
| ATTACCCAATTTGGGGTTGC+CGG | 0.354313 | 3_1:-85146993 | Msa0382510:CDS |
| TGGGGCCTTTAGTCTTCTCT+AGG | 0.358115 | 3_1:-85145741 | Msa0382510:three_prime_UTR |
| ATGTCACCGAGAAAGGATTC+TGG | 0.362806 | 3_1:-85147235 | Msa0382510:CDS |
| TAGATTAACATTACCCAAAC+TGG | 0.367200 | 3_1:+85146710 | None:intergenic |
| TTAGGGAAGCTTTCAATTCA+TGG | 0.367968 | 3_1:-85147743 | Msa0382510:CDS |
| AAGCTCCTATCTTGTCCTTC+AGG | 0.374082 | 3_1:+85147971 | None:intergenic |
| AATCCTTTCTCGGTGACATT+TGG | 0.374117 | 3_1:+85147239 | None:intergenic |
| CTAGCAGTTATTGGACAATA+TGG | 0.374694 | 3_1:-85147296 | Msa0382510:CDS |
| GTGGCAAAACCGATGCAAAA+TGG | 0.376733 | 3_1:+85145963 | None:intergenic |
| AGAAGAGACCCGCCTCCTTC+GGG | 0.379204 | 3_1:+85148155 | None:intergenic |
| GAAAGTTGTGTCCAAATCTA+AGG | 0.379486 | 3_1:-85147439 | Msa0382510:CDS |
| CTCACAATTGGGCTGTGCCC+TGG | 0.383441 | 3_1:-85147173 | Msa0382510:CDS |
| AAGTTGCATTGTTCGACTCT+TGG | 0.384757 | 3_1:-85146642 | Msa0382510:CDS |
| GACCCGCCTCCTTCGGGTTA+AGG | 0.385671 | 3_1:+85148161 | None:intergenic |
| GCGGGTCTCTTCTTGTCTCT+TGG | 0.388125 | 3_1:-85148145 | Msa0382510:CDS |
| TCTAAAGTTCTCAGCTTTAC+CGG | 0.389616 | 3_1:-85148829 | Msa0382510:intron |
| CAGAGGTCTAAGGCCAGTTT+GGG | 0.390240 | 3_1:-85146723 | Msa0382510:CDS |
| AATGAAGGTCTACATGCTAT+TGG | 0.392573 | 3_1:-85147461 | Msa0382510:CDS |
| CTTCCAAATGTCACCGAGAA+AGG | 0.393704 | 3_1:-85147242 | Msa0382510:CDS |
| CATCAGTTATCGGTGGGTCT+TGG | 0.393846 | 3_1:-85146204 | Msa0382510:three_prime_UTR |
| GCCCTGGAGTAACAGATATT+GGG | 0.394824 | 3_1:-85147157 | Msa0382510:CDS |
| GCCTCTTTGAGATCCTTAGA+AGG | 0.399791 | 3_1:-85147997 | Msa0382510:CDS |
| CTGTCCTGGAGTTCGTGATC+AGG | 0.403623 | 3_1:-85147399 | Msa0382510:CDS |
| AGAGAGAGACCCTATGAGAT+AGG | 0.405319 | 3_1:+85148970 | None:intergenic |
| TTTAGGTTTCTTTCTGGTGT+TGG | 0.405673 | 3_1:-85146005 | Msa0382510:three_prime_UTR |
| CACAATCTCGAGGAGGATTA+GGG | 0.405866 | 3_1:-85147760 | Msa0382510:CDS |
| CTGGATGTACTTTCTTTGGC+AGG | 0.406723 | 3_1:-85146468 | Msa0382510:CDS |
| AAGAAGAGACCCGCCTCCTT+CGG | 0.411237 | 3_1:+85148154 | None:intergenic |
| CTTGAATTGATTGGACTTGA+GGG | 0.412726 | 3_1:-85146777 | Msa0382510:CDS |
| CCAACACTGATAATAAAATC+TGG | 0.413025 | 3_1:+85146247 | None:intergenic |
| ATCAATTGTGAGCCTACAAT+TGG | 0.415296 | 3_1:-85147030 | Msa0382510:CDS |
| TACCAACTCCAGGGCAGTTA+CGG | 0.416240 | 3_1:+85146847 | None:intergenic |
| AAAATTGAAGGCTCTTACTC+TGG | 0.417528 | 3_1:-85146949 | Msa0382510:CDS |
| TATGGCACTCTTCCAATTGT+AGG | 0.418212 | 3_1:+85147018 | None:intergenic |
| CACAATTGATGGAGCAGCCT+TGG | 0.432002 | 3_1:+85147043 | None:intergenic |
| AACTAACGTCGCTCACAATT+GGG | 0.438220 | 3_1:-85147184 | Msa0382510:CDS |
| ATTGACAGTTCAGAGTTGTA+TGG | 0.439830 | 3_1:-85145761 | Msa0382510:three_prime_UTR |
| CTTACTCTGGTAAGCTGCTA+CGG | 0.439956 | 3_1:-85146936 | Msa0382510:CDS |
| ACAAGCTTGTGGAACATCTC+TGG | 0.440119 | 3_1:-85146338 | Msa0382510:CDS |
| GTTCGTGATCAGGGAATTGC+TGG | 0.441466 | 3_1:-85147389 | Msa0382510:CDS |
| CATCACCCAGAATCCTTTCT+CGG | 0.442853 | 3_1:+85147229 | None:intergenic |
| CAACCACTCTGGACAAACTT+TGG | 0.444390 | 3_1:+85145902 | None:intergenic |
| GGCTTGATCGAGATTGCTAA+TGG | 0.449362 | 3_1:-85147611 | Msa0382510:CDS |
| AAAAGCAGCATCCCGTCAAC+AGG | 0.451130 | 3_1:+85146072 | None:intergenic |
| TGCATCGGTGATTGCACACT+CGG | 0.454668 | 3_1:+85146527 | None:intergenic |
| ATCGATAACTCAGTCAGATT+CGG | 0.457316 | 3_1:+85147506 | None:intergenic |
| ACATCAGTCAAGGCACGATC+TGG | 0.458394 | 3_1:+85147713 | None:intergenic |
| AAACCGTGGTGCAAAATTGA+AGG | 0.459034 | 3_1:-85146961 | Msa0382510:CDS |
| AATCAAGAATTTGGTGATGA+AGG | 0.460069 | 3_1:-85147851 | Msa0382510:CDS |
| TGAACAGGACTCCACGAGTA+AGG | 0.461905 | 3_1:+85146493 | None:intergenic |
| GAGTGTGCAATCACCGATGC+AGG | 0.462800 | 3_1:-85146525 | Msa0382510:CDS |
| GACACCGGCAACCCCAAATT+GGG | 0.463002 | 3_1:+85146989 | None:intergenic |
| CAGGTTTCCTTATAATTGAA+AGG | 0.463848 | 3_1:-85146122 | Msa0382510:three_prime_UTR |
| ATCTCAAAGAGGCATTCATC+AGG | 0.464081 | 3_1:+85148007 | None:intergenic |
| GATCAAGCCTTTGTCACTAA+TGG | 0.465229 | 3_1:+85147625 | None:intergenic |
| GATAACAAAATCACATAAGC+TGG | 0.467001 | 3_1:+85145793 | None:intergenic |
| TCGTGGAGTCCTGTTCAATC+TGG | 0.467985 | 3_1:-85146487 | Msa0382510:CDS |
| GATAATAAAATCTGGAGAGC+AGG | 0.468463 | 3_1:+85146255 | None:intergenic |
| TGTTCTGTACGCGATGTTTG+TGG | 0.469452 | 3_1:-85145847 | Msa0382510:three_prime_UTR |
| TATTGGACAATATGGCTTTG+TGG | 0.469637 | 3_1:-85147288 | Msa0382510:CDS |
| GGTTGCCTGAAGGACAAGAT+AGG | 0.472680 | 3_1:-85147976 | Msa0382510:CDS |
| AGCCCAATATCTGTTACTCC+AGG | 0.474848 | 3_1:+85147155 | None:intergenic |
| GGATTCTGGGTGATGGGTAA+TGG | 0.476172 | 3_1:-85147221 | Msa0382510:CDS |
| AATGTCCCATTTGACTTCAG+TGG | 0.477222 | 3_1:-85148076 | Msa0382510:CDS |
| TTTCTCCACTGAAGTCAAAT+GGG | 0.478494 | 3_1:+85148071 | None:intergenic |
| TAGAAGCGTGAGCCAGCGCT+TGG | 0.480253 | 3_1:+85147934 | None:intergenic |
| AGGCTATCTTTCTCGAAGCT+TGG | 0.481683 | 3_1:-85147831 | Msa0382510:CDS |
| CATAATATAACTAGTACAAA+GGG | 0.483698 | 3_1:+85145565 | None:intergenic |
| TTATCAATCCGTAACTGCCC+TGG | 0.487556 | 3_1:-85146855 | Msa0382510:CDS |
| TTGGGTAATGTTAATCTAAG+TGG | 0.488310 | 3_1:-85146705 | Msa0382510:CDS |
| AAAGTACATCCAGATTGAAC+AGG | 0.488581 | 3_1:+85146478 | None:intergenic |
| GATTGAACAACTGTATGCTC+TGG | 0.488817 | 3_1:+85146155 | None:intergenic |
| GTCTGTAAGCATATTCTTGA+CGG | 0.492252 | 3_1:+85148122 | None:intergenic |
| CTATCTTTCTCGAAGCTTGG+AGG | 0.492264 | 3_1:-85147828 | Msa0382510:CDS |
| TTGACAGTTCAGAGTTGTAT+GGG | 0.494960 | 3_1:-85145760 | Msa0382510:three_prime_UTR |
| CAGAAGAAACCTCAAAGAAG+AGG | 0.495710 | 3_1:+85148903 | None:intergenic |
| GGGCTTGAAGCTGTAGGAAA+GGG | 0.497092 | 3_1:-85147137 | Msa0382510:CDS |
| CCAGAAAGAAACCTAAATTC+AGG | 0.498677 | 3_1:+85146011 | None:intergenic |
| TCATAATATAACTAGTACAA+AGG | 0.502352 | 3_1:+85145564 | None:intergenic |
| GGTCTCAAGGCAGTTGCTCA+TGG | 0.502544 | 3_1:-85147689 | Msa0382510:CDS |
| CCCCAAATTGGGTAATCCTA+TGG | 0.504344 | 3_1:+85147000 | None:intergenic |
| TACCTTAACCCGAAGGAGGC+GGG | 0.504347 | 3_1:-85148163 | Msa0382510:CDS |
| TGTCACCGAGAAAGGATTCT+GGG | 0.505645 | 3_1:-85147234 | Msa0382510:CDS |
| ACGTTAGTTGCTGCAGTGCA+TGG | 0.507163 | 3_1:+85147198 | None:intergenic |
| AAAGCCTTGTCAGAAATTGT+TGG | 0.508372 | 3_1:+85147551 | None:intergenic |
| ATCCGTAACTGCCCTGGAGT+TGG | 0.514000 | 3_1:-85146849 | Msa0382510:CDS |
| CGAGAAAGGATTCTGGGTGA+TGG | 0.515420 | 3_1:-85147228 | Msa0382510:CDS |
| GTGCTTCTGTATCCAAGCGC+TGG | 0.517996 | 3_1:-85147946 | Msa0382510:CDS |
| CTTTCTCGGTGACATTTGGA+AGG | 0.518084 | 3_1:+85147243 | None:intergenic |
| AGAGTAAAATTACCAACTCC+AGG | 0.518751 | 3_1:+85146837 | None:intergenic |
| ATTCTGCGGTATAGATATCA+AGG | 0.518800 | 3_1:+85146286 | None:intergenic |
| GGGATTTCTGCCCTTACTCG+TGG | 0.522818 | 3_1:-85146504 | Msa0382510:CDS |
| TGGGTTAACACCAACCACTC+TGG | 0.534760 | 3_1:+85145891 | None:intergenic |
| CAAAGTTTGTCCAGAGTGGT+TGG | 0.534976 | 3_1:-85145901 | Msa0382510:three_prime_UTR |
| GGTTTATTTCACTGCTTCAG+AGG | 0.535734 | 3_1:-85146740 | Msa0382510:CDS |
| AATGTATCAGAACATGAAAG+TGG | 0.536150 | 3_1:+85149117 | None:intergenic |
| TGAAGCAGTGAAATAAACCC+TGG | 0.539869 | 3_1:+85146744 | None:intergenic |
| AGACTAGCTGCCATTGCTGT+TGG | 0.540189 | 3_1:-85147785 | Msa0382510:CDS |
| TGTCCTAGCATCGGTAATGA+AGG | 0.540249 | 3_1:-85147476 | Msa0382510:CDS |
| TTGGGTACATTGAGTGTGAC+AGG | 0.543357 | 3_1:+85149085 | None:intergenic |
| TTGGGTCCATCAGTTATCGG+TGG | 0.543420 | 3_1:-85146211 | Msa0382510:three_prime_UTR |
| TGTGACATCCTCTTCTGAGC+AGG | 0.543791 | 3_1:-85146312 | Msa0382510:exon |
| TATCTTTCTCGAAGCTTGGA+GGG | 0.544169 | 3_1:-85147827 | Msa0382510:CDS |
| AAATTGTTGGCAACTTGCAT+AGG | 0.545096 | 3_1:+85147564 | None:intergenic |
| ATATCTATACCGCAGAATCT+GGG | 0.545719 | 3_1:-85146281 | Msa0382510:three_prime_UTR |
| TGGGTCCATCAGTTATCGGT+GGG | 0.548492 | 3_1:-85146210 | Msa0382510:three_prime_UTR |
| GTCTGACATGGAGATACTGC+TGG | 0.549571 | 3_1:+85146888 | None:intergenic |
| GGGGCCTTTAGTCTTCTCTA+GGG | 0.551404 | 3_1:-85145740 | Msa0382510:three_prime_UTR |
| CAACGCAAGTTCTGGAAACA+AGG | 0.552191 | 3_1:-85147882 | Msa0382510:CDS |
| TCTTGAATTGATTGGACTTG+AGG | 0.552643 | 3_1:-85146778 | Msa0382510:CDS |
| TTACTCTGGTAAGCTGCTAC+GGG | 0.552800 | 3_1:-85146935 | Msa0382510:CDS |
| TACAGACTGCTGTGAAAACA+CGG | 0.555367 | 3_1:+85145925 | None:intergenic |
| TGTCCTGGAGTTCGTGATCA+GGG | 0.555690 | 3_1:-85147398 | Msa0382510:CDS |
| ATCTTTCTCGAAGCTTGGAG+GGG | 0.555765 | 3_1:-85147826 | Msa0382510:CDS |
| GTACCTTAACCCGAAGGAGG+CGG | 0.556569 | 3_1:-85148164 | Msa0382510:CDS |
| GTGCATTTCTGTCAGACAAT+GGG | 0.557102 | 3_1:-85147079 | Msa0382510:CDS |
| TAATGGTTGTCATCAGATAG+AGG | 0.558248 | 3_1:-85147594 | Msa0382510:CDS |
| TGGGCTTGAAGCTGTAGGAA+AGG | 0.558947 | 3_1:-85147138 | Msa0382510:CDS |
| AACACGGGAACAACGAAACA+TGG | 0.559424 | 3_1:+85145941 | None:intergenic |
| GAGAGAGACCCTATGAGATA+GGG | 0.561488 | 3_1:+85148971 | None:intergenic |
| CTTGACTGATGTAGGTCTCA+AGG | 0.565875 | 3_1:-85147702 | Msa0382510:CDS |
| AATTCAAGACACTGAAGCAT+AGG | 0.567525 | 3_1:+85146792 | None:intergenic |
| GAGTGAAAGACTTCAGAGAA+GGG | 0.568710 | 3_1:+85147663 | None:intergenic |
| GAGAAAGGATTCTGGGTGAT+GGG | 0.569849 | 3_1:-85147227 | Msa0382510:CDS |
| AGAAGAAACCTCAAAGAAGA+GGG | 0.570422 | 3_1:+85148904 | None:intergenic |
| GTTAAGGATTGTCAAAGGTG+TGG | 0.573378 | 3_1:+85149031 | None:intergenic |
| TGCATCAATCTGACAGATGT+AGG | 0.573775 | 3_1:-85146681 | Msa0382510:CDS |
| ATTCCCTGATCACGAACTCC+AGG | 0.574036 | 3_1:+85147395 | None:intergenic |
| ATGTATCAGAACATGAAAGT+GGG | 0.574854 | 3_1:+85149118 | None:intergenic |
| GATATTGGGCTTGAAGCTGT+AGG | 0.576495 | 3_1:-85147143 | Msa0382510:CDS |
| CAAGACCCACCGATAACTGA+TGG | 0.577463 | 3_1:+85146205 | None:intergenic |
| AGAGTGAAAGACTTCAGAGA+AGG | 0.580309 | 3_1:+85147662 | None:intergenic |
| TGTGCATTTCTGTCAGACAA+TGG | 0.584416 | 3_1:-85147080 | Msa0382510:CDS |
| AAATTGGGTGATTCCCTCGA+GGG | 0.585090 | 3_1:-85146405 | Msa0382510:CDS |
| ATTGTCTGCAATTGCTGTCA+AGG | 0.587916 | 3_1:+85146578 | None:intergenic |
| AGATTGTGTGCCAACAGCAA+TGG | 0.591886 | 3_1:+85147775 | None:intergenic |
| GAACAGGACTCCACGAGTAA+GGG | 0.593363 | 3_1:+85146494 | None:intergenic |
| TTTCTCGGTGACATTTGGAA+GGG | 0.597962 | 3_1:+85147244 | None:intergenic |
| GTTGCTACCATTAGTGACAA+AGG | 0.599127 | 3_1:-85147632 | Msa0382510:CDS |
| AAAACCCTAGAGAAGACTAA+AGG | 0.599294 | 3_1:+85145736 | None:intergenic |
| CAAGGCTACCTGCTCAGAAG+AGG | 0.600220 | 3_1:+85146304 | None:intergenic |
| CCGCACAGTTAACAAGCTTG+TGG | 0.604170 | 3_1:-85146349 | Msa0382510:CDS |
| GATCGTGCCTTGACTGATGT+AGG | 0.605270 | 3_1:-85147710 | Msa0382510:CDS |
| CCATAGGATTACCCAATTTG+GGG | 0.605745 | 3_1:-85147000 | Msa0382510:CDS |
| GTTGCCAACAATTTCTGACA+AGG | 0.608947 | 3_1:-85147555 | Msa0382510:CDS |
| CATTACATAACATAAGATAG+AGG | 0.609972 | 3_1:+85145601 | None:intergenic |
| AAGGGCAGAAATCCCTGCAT+CGG | 0.611779 | 3_1:+85146512 | None:intergenic |
| ATTTCTGTCAGACAATGGGC+TGG | 0.612009 | 3_1:-85147075 | Msa0382510:CDS |
| TGAAGGTTAAGGATTGTCAA+AGG | 0.615682 | 3_1:+85149026 | None:intergenic |
| TACAATTGGAAGAGTGCCAT+AGG | 0.616497 | 3_1:-85147016 | Msa0382510:CDS |
| CTTGAGGGAATAACAGACCC+AGG | 0.616547 | 3_1:-85146762 | Msa0382510:CDS |
| ATCCTTAGAAGGTTGCCTGA+AGG | 0.616856 | 3_1:-85147986 | Msa0382510:CDS |
| ATAGAGTCATGTCCTAGCAT+CGG | 0.621372 | 3_1:-85147485 | Msa0382510:CDS |
| CGAACAATGCAACTTGACCA+TGG | 0.623330 | 3_1:+85146650 | None:intergenic |
| GAAGCAGTGAAATAAACCCT+GGG | 0.624828 | 3_1:+85146745 | None:intergenic |
| ACCACGGTTTAAAATGACAC+CGG | 0.630252 | 3_1:+85146974 | None:intergenic |
| ACCTTCTAAGGATCTCAAAG+AGG | 0.631936 | 3_1:+85147996 | None:intergenic |
| AGTGTGCAATCACCGATGCA+GGG | 0.633058 | 3_1:-85146524 | Msa0382510:CDS |
| TCTCTGAGAACATAGTTACT+GGG | 0.633267 | 3_1:-85146035 | Msa0382510:three_prime_UTR |
| GCCCAATATCTGTTACTCCA+GGG | 0.638985 | 3_1:+85147156 | None:intergenic |
| AATGACGAAATTGTCTGACA+TGG | 0.645410 | 3_1:+85146876 | None:intergenic |
| GTCGATGTACCTTAACCCGA+AGG | 0.647280 | 3_1:-85148170 | Msa0382510:CDS |
| CTTGAGACCTACATCAGTCA+AGG | 0.649066 | 3_1:+85147703 | None:intergenic |
| TGTATCAGAACATGAAAGTG+GGG | 0.652634 | 3_1:+85149119 | None:intergenic |
| AGACCTTCATTACCGATGCT+AGG | 0.654284 | 3_1:+85147473 | None:intergenic |
| AGCAGGCTACCCAGATTCTG+CGG | 0.661774 | 3_1:+85146272 | None:intergenic |
| GAGTAAAATTACCAACTCCA+GGG | 0.662405 | 3_1:+85146838 | None:intergenic |
| GCAAGTTCTGGAAACAAGGA+CGG | 0.662723 | 3_1:-85147878 | Msa0382510:CDS |
| GCATAGGACAGAGCTTCCCA+AGG | 0.666207 | 3_1:+85146808 | None:intergenic |
| TGACAGTTCAGAGTTGTATG+GGG | 0.667130 | 3_1:-85145759 | Msa0382510:three_prime_UTR |
| GTACCAAAGTTTGTCCAGAG+TGG | 0.668797 | 3_1:-85145905 | Msa0382510:three_prime_UTR |
| TTGAGGGAATAACAGACCCA+GGG | 0.669478 | 3_1:-85146761 | Msa0382510:CDS |
| GATGTACCTTAACCCGAAGG+AGG | 0.670839 | 3_1:-85148167 | Msa0382510:CDS |
| CCACAAGCTTGTTAACTGTG+CGG | 0.680303 | 3_1:+85146349 | None:intergenic |
| GCTGTTGGCACACAATCTCG+AGG | 0.687326 | 3_1:-85147770 | Msa0382510:CDS |
| AAAATTGGGTGATTCCCTCG+AGG | 0.689356 | 3_1:-85146406 | Msa0382510:CDS |
| ACAGACTGCTGTGAAAACAC+GGG | 0.689596 | 3_1:+85145926 | None:intergenic |
| ACGGGAACAACGAAACATGG+TGG | 0.725413 | 3_1:+85145944 | None:intergenic |
| GTTGGCACACAATCTCGAGG+AGG | 0.726557 | 3_1:-85147767 | Msa0382510:CDS |
| TGGGCTGGTATCGTTCACCA+AGG | 0.727978 | 3_1:-85147060 | Msa0382510:CDS |
| ATAGATCAAAGAACAACACA+AGG | 0.730025 | 3_1:+85148859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGAAAATTAATGAATAA+TGG | - | chr3_1:85149092-85149111 | Msa0382510:five_prime_UTR | 10.0% |
| !!! | TATGATTTCTATTTTAGTTT+TGG | - | chr3_1:85145974-85145993 | Msa0382510:three_prime_UTR | 15.0% |
| !!! | TTTTGAGATAGTATATAATT+TGG | - | chr3_1:85146057-85146076 | Msa0382510:three_prime_UTR | 15.0% |
| !!! | GTCAATTTAATTTTTTTGTT+TGG | - | chr3_1:85146301-85146320 | Msa0382510:exon | 15.0% |
| !!! | GGTAATTAAATCTACTTTTT+TGG | - | chr3_1:85145995-85146014 | Msa0382510:three_prime_UTR | 20.0% |
| !!! | AATTAAATCTACTTTTTTGG+TGG | - | chr3_1:85145998-85146017 | Msa0382510:three_prime_UTR | 20.0% |
| !!! | ACGATAAAAGATAATTTTGT+TGG | - | chr3_1:85146112-85146131 | Msa0382510:three_prime_UTR | 20.0% |
| !!! | TAGTTGTTATATGTATTTTG+TGG | - | chr3_1:85146135-85146154 | Msa0382510:three_prime_UTR | 20.0% |
| !!! | AGTTGTTATATGTATTTTGT+GGG | - | chr3_1:85146136-85146155 | Msa0382510:three_prime_UTR | 20.0% |
| !! | TTATATAATACTCATTCATG+TGG | - | chr3_1:85146348-85146367 | Msa0382510:CDS | 20.0% |
| !!! | AATCTGTTGAAAGTTTTTTT+TGG | - | chr3_1:85148541-85148560 | Msa0382510:intron | 20.0% |
| !! | CATAATATAACTAGTACAAA+GGG | + | chr3_1:85149077-85149096 | None:intergenic | 20.0% |
| !! | TCATAATATAACTAGTACAA+AGG | + | chr3_1:85149078-85149097 | None:intergenic | 20.0% |
| !! | TCAGTATGCAATAAAATATA+TGG | + | chr3_1:85149140-85149159 | None:intergenic | 20.0% |
| ! | TGAAAAAAGAAGAGATTGTT+GGG | + | chr3_1:85145575-85145594 | None:intergenic | 25.0% |
| ! | AAAAATGAAAGTGAAGGTTA+AGG | + | chr3_1:85145627-85145646 | None:intergenic | 25.0% |
| ! | AGAGAAAAAAATGAAAGTGA+AGG | + | chr3_1:85145633-85145652 | None:intergenic | 25.0% |
| ! | TTCATGTTTCATCTGATTAT+TGG | - | chr3_1:85145849-85145868 | Msa0382510:three_prime_UTR | 25.0% |
| !! | ATATGTCTAGTTATGTGTTT+TGG | - | chr3_1:85146279-85146298 | Msa0382510:three_prime_UTR | 25.0% |
| !!! | AGGACAGTTTTTAATTGATA+CGG | + | chr3_1:85147227-85147246 | None:intergenic | 25.0% |
| !!! | TGTCAGCTTTTTTAGAATAA+TGG | + | chr3_1:85147293-85147312 | None:intergenic | 25.0% |
| ! | AAACCTTAATGGTTGTAAAA+AGG | - | chr3_1:85148026-85148045 | Msa0382510:CDS | 25.0% |
| !!! | TTGTCTGCTTTGAAAAAATT+GGG | - | chr3_1:85148219-85148238 | Msa0382510:intron | 25.0% |
| !! | TTTTATATTTAATCCCTCGA+GGG | + | chr3_1:85148250-85148269 | None:intergenic | 25.0% |
| !! | TTTTTATATTTAATCCCTCG+AGG | + | chr3_1:85148251-85148270 | None:intergenic | 25.0% |
| !!! | TGTTCAATCTTTATTTTTGC+AGG | - | chr3_1:85148498-85148517 | Msa0382510:intron | 25.0% |
| ! | CAGATTTCCTTTCAATTATA+AGG | + | chr3_1:85148527-85148546 | None:intergenic | 25.0% |
| !!! | CTTATGTGATTTTGTTATCT+TGG | - | chr3_1:85148850-85148869 | Msa0382510:exon | 25.0% |
| ! | AAGAAGCCTAAAAAAAACTA+GGG | + | chr3_1:85148995-85149014 | None:intergenic | 25.0% |
| ! | AAAGAAGCCTAAAAAAAACT+AGG | + | chr3_1:85148996-85149015 | None:intergenic | 25.0% |
| ! | CATTACATAACATAAGATAG+AGG | + | chr3_1:85149041-85149060 | None:intergenic | 25.0% |
| !!! | TGAATAATGGTTTGTACTTT+TGG | - | chr3_1:85149105-85149124 | Msa0382510:five_prime_UTR | 25.0% |
| ATGTATCAGAACATGAAAGT+GGG | + | chr3_1:85145524-85145543 | None:intergenic | 30.0% | |
| AATGTATCAGAACATGAAAG+TGG | + | chr3_1:85145525-85145544 | None:intergenic | 30.0% | |
| GTGAAAAAAGAAGAGATTGT+TGG | + | chr3_1:85145576-85145595 | None:intergenic | 30.0% | |
| !! | TCAAAGGTGTGGTTTTTATT+GGG | + | chr3_1:85145600-85145619 | None:intergenic | 30.0% |
| TGAGATAGGGCAAAAAAAAA+GGG | + | chr3_1:85145658-85145677 | None:intergenic | 30.0% | |
| ATGAGATAGGGCAAAAAAAA+AGG | + | chr3_1:85145659-85145678 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGCCCTATCTCAT+AGG | - | chr3_1:85145659-85145678 | Msa0382510:three_prime_UTR | 30.0% |
| !!! | TTTTTTTGCCCTATCTCATA+GGG | - | chr3_1:85145660-85145679 | Msa0382510:three_prime_UTR | 30.0% |
| ATAGATCAAAGAACAACACA+AGG | + | chr3_1:85145783-85145802 | None:intergenic | 30.0% | |
| TGCTCAAAATTCATTTGTGT+TGG | - | chr3_1:85146247-85146266 | Msa0382510:three_prime_UTR | 30.0% | |
| !! | AATCAAGAATTTGGTGATGA+AGG | - | chr3_1:85146788-85146807 | Msa0382510:CDS | 30.0% |
| GTATCAATTAAAAACTGTCC+TGG | - | chr3_1:85147226-85147245 | Msa0382510:CDS | 30.0% | |
| ! | TAATGGATGCTGAACATAAT+AGG | + | chr3_1:85147276-85147295 | None:intergenic | 30.0% |
| ! | AGCTGAAAGTTTTTCACATT+TGG | + | chr3_1:85147532-85147551 | None:intergenic | 30.0% |
| TAGATTAACATTACCCAAAC+TGG | + | chr3_1:85147932-85147951 | None:intergenic | 30.0% | |
| TTGGGTAATGTTAATCTAAG+TGG | - | chr3_1:85147934-85147953 | Msa0382510:CDS | 30.0% | |
| CTTAATGGTTGTAAAAAGGT+CGG | - | chr3_1:85148030-85148049 | Msa0382510:CDS | 30.0% | |
| TTAATGGTTGTAAAAAGGTC+GGG | - | chr3_1:85148031-85148050 | Msa0382510:CDS | 30.0% | |
| !! | CTTGTCTGCTTTGAAAAAAT+TGG | - | chr3_1:85148218-85148237 | Msa0382510:intron | 30.0% |
| CCAACACTGATAATAAAATC+TGG | + | chr3_1:85148395-85148414 | None:intergenic | 30.0% | |
| ! | CCAGATTTTATTATCAGTGT+TGG | - | chr3_1:85148392-85148411 | Msa0382510:intron | 30.0% |
| CAGGTTTCCTTATAATTGAA+AGG | - | chr3_1:85148517-85148536 | Msa0382510:intron | 30.0% | |
| GTTCAAATACGCGAAAAATT+GGG | + | chr3_1:85148770-85148789 | None:intergenic | 30.0% | |
| AGTTCAAATACGCGAAAAAT+TGG | + | chr3_1:85148771-85148790 | None:intergenic | 30.0% | |
| GATAACAAAATCACATAAGC+TGG | + | chr3_1:85148849-85148868 | None:intergenic | 30.0% | |
| AAAAAAACAATCCTTCCCAA+GGG | + | chr3_1:85148964-85148983 | None:intergenic | 30.0% | |
| TGTATCAGAACATGAAAGTG+GGG | + | chr3_1:85145523-85145542 | None:intergenic | 35.0% | |
| !! | GTCAAAGGTGTGGTTTTTAT+TGG | + | chr3_1:85145601-85145620 | None:intergenic | 35.0% |
| TGAAGGTTAAGGATTGTCAA+AGG | + | chr3_1:85145616-85145635 | None:intergenic | 35.0% | |
| ! | TTCTTTTTCCCTCTTCTTTG+AGG | - | chr3_1:85145727-85145746 | Msa0382510:three_prime_UTR | 35.0% |
| AGAAGAAACCTCAAAGAAGA+GGG | + | chr3_1:85145738-85145757 | None:intergenic | 35.0% | |
| ! | TCTAAAGTTCTCAGCTTTAC+CGG | - | chr3_1:85145810-85145829 | Msa0382510:three_prime_UTR | 35.0% |
| !! | TTACCGGTAAGCTTTTGATT+TGG | - | chr3_1:85145826-85145845 | Msa0382510:three_prime_UTR | 35.0% |
| GAACCAAATCAAAAGCTTAC+CGG | + | chr3_1:85145832-85145851 | None:intergenic | 35.0% | |
| !! | ACTCATTCATGTGGTTTTAC+TGG | - | chr3_1:85146357-85146376 | Msa0382510:CDS | 35.0% |
| TGAGAAATCAAACACACACA+AGG | + | chr3_1:85146423-85146442 | None:intergenic | 35.0% | |
| ! | TTGTGTGTGTTTGATTTCTC+AGG | - | chr3_1:85146422-85146441 | Msa0382510:CDS | 35.0% |
| ! | GTGATGATTTTTGTACTGGA+AGG | - | chr3_1:85146447-85146466 | Msa0382510:CDS | 35.0% |
| GTCTGTAAGCATATTCTTGA+CGG | + | chr3_1:85146520-85146539 | None:intergenic | 35.0% | |
| TTTCTCCACTGAAGTCAAAT+GGG | + | chr3_1:85146571-85146590 | None:intergenic | 35.0% | |
| ! | TTTTCTCCACTGAAGTCAAA+TGG | + | chr3_1:85146572-85146591 | None:intergenic | 35.0% |
| TTGACTTCAGTGGAGAAAAA+TGG | - | chr3_1:85146573-85146592 | Msa0382510:CDS | 35.0% | |
| TTAGGGAAGCTTTCAATTCA+TGG | - | chr3_1:85146896-85146915 | Msa0382510:CDS | 35.0% | |
| ! | TCTGAAGTCTTTCACTCTTT+GGG | - | chr3_1:85146982-85147001 | Msa0382510:CDS | 35.0% |
| TAATGGTTGTCATCAGATAG+AGG | - | chr3_1:85147045-85147064 | Msa0382510:CDS | 35.0% | |
| AAATTGTTGGCAACTTGCAT+AGG | + | chr3_1:85147078-85147097 | None:intergenic | 35.0% | |
| ! | AAAGCCTTGTCAGAAATTGT+TGG | + | chr3_1:85147091-85147110 | None:intergenic | 35.0% |
| ATCGATAACTCAGTCAGATT+CGG | + | chr3_1:85147136-85147155 | None:intergenic | 35.0% | |
| AATGAAGGTCTACATGCTAT+TGG | - | chr3_1:85147178-85147197 | Msa0382510:CDS | 35.0% | |
| GAAAGTTGTGTCCAAATCTA+AGG | - | chr3_1:85147200-85147219 | Msa0382510:CDS | 35.0% | |
| ATTGATACGGACCTTAGATT+TGG | + | chr3_1:85147214-85147233 | None:intergenic | 35.0% | |
| GATTACTCACTAGCAGTTAT+TGG | - | chr3_1:85147334-85147353 | Msa0382510:CDS | 35.0% | |
| CTAGCAGTTATTGGACAATA+TGG | - | chr3_1:85147343-85147362 | Msa0382510:CDS | 35.0% | |
| ! | TATTGGACAATATGGCTTTG+TGG | - | chr3_1:85147351-85147370 | Msa0382510:CDS | 35.0% |
| TGAAAAACTTTCAGCTTCGT+AGG | - | chr3_1:85147536-85147555 | Msa0382510:CDS | 35.0% | |
| AATTGTAGGCTCACAATTGA+TGG | + | chr3_1:85147610-85147629 | None:intergenic | 35.0% | |
| ATCAATTGTGAGCCTACAAT+TGG | - | chr3_1:85147609-85147628 | Msa0382510:CDS | 35.0% | |
| AAAATTGAAGGCTCTTACTC+TGG | - | chr3_1:85147690-85147709 | Msa0382510:CDS | 35.0% | |
| AATGACGAAATTGTCTGACA+TGG | + | chr3_1:85147766-85147785 | None:intergenic | 35.0% | |
| GAGTAAAATTACCAACTCCA+GGG | + | chr3_1:85147804-85147823 | None:intergenic | 35.0% | |
| AGAGTAAAATTACCAACTCC+AGG | + | chr3_1:85147805-85147824 | None:intergenic | 35.0% | |
| ! | AATTTTACTCTCAACGTCCT+TGG | - | chr3_1:85147814-85147833 | Msa0382510:CDS | 35.0% |
| ! | ATTTTACTCTCAACGTCCTT+GGG | - | chr3_1:85147815-85147834 | Msa0382510:CDS | 35.0% |
| AATTCAAGACACTGAAGCAT+AGG | + | chr3_1:85147850-85147869 | None:intergenic | 35.0% | |
| CTTCAGTGTCTTGAATTGAT+TGG | - | chr3_1:85147853-85147872 | Msa0382510:CDS | 35.0% | |
| TCTTGAATTGATTGGACTTG+AGG | - | chr3_1:85147861-85147880 | Msa0382510:CDS | 35.0% | |
| CTTGAATTGATTGGACTTGA+GGG | - | chr3_1:85147862-85147881 | Msa0382510:CDS | 35.0% | |
| ! | CGACCTTTTTACAACCATTA+AGG | + | chr3_1:85148032-85148051 | None:intergenic | 35.0% |
| TAATGGTTGTAAAAAGGTCG+GGG | - | chr3_1:85148032-85148051 | Msa0382510:CDS | 35.0% | |
| AAAGTACATCCAGATTGAAC+AGG | + | chr3_1:85148164-85148183 | None:intergenic | 35.0% | |
| CAATCTGGATGTACTTTCTT+TGG | - | chr3_1:85148167-85148186 | Msa0382510:CDS | 35.0% | |
| ATTCTGCGGTATAGATATCA+AGG | + | chr3_1:85148356-85148375 | None:intergenic | 35.0% | |
| ATATCTATACCGCAGAATCT+GGG | - | chr3_1:85148358-85148377 | Msa0382510:intron | 35.0% | |
| GATAATAAAATCTGGAGAGC+AGG | + | chr3_1:85148387-85148406 | None:intergenic | 35.0% | |
| !!! | TTTTATTATCAGTGTTGGCG+AGG | - | chr3_1:85148397-85148416 | Msa0382510:intron | 35.0% |
| !!! | TTTTTGGGTCCATCAGTTAT+CGG | - | chr3_1:85148425-85148444 | Msa0382510:intron | 35.0% |
| !!! | TTTTTTTGGCATCCTGTTGA+CGG | - | chr3_1:85148555-85148574 | Msa0382510:intron | 35.0% |
| ! | ATCTCTGAGAACATAGTTAC+TGG | - | chr3_1:85148603-85148622 | Msa0382510:intron | 35.0% |
| ! | TCTCTGAGAACATAGTTACT+GGG | - | chr3_1:85148604-85148623 | Msa0382510:intron | 35.0% |
| CCAGAAAGAAACCTAAATTC+AGG | + | chr3_1:85148631-85148650 | None:intergenic | 35.0% | |
| ! | CCTGAATTTAGGTTTCTTTC+TGG | - | chr3_1:85148628-85148647 | Msa0382510:intron | 35.0% |
| ! | TTTAGGTTTCTTTCTGGTGT+TGG | - | chr3_1:85148634-85148653 | Msa0382510:intron | 35.0% |
| ATTGACAGTTCAGAGTTGTA+TGG | - | chr3_1:85148878-85148897 | Msa0382510:five_prime_UTR | 35.0% | |
| TTGACAGTTCAGAGTTGTAT+GGG | - | chr3_1:85148879-85148898 | Msa0382510:five_prime_UTR | 35.0% | |
| AAAACCCTAGAGAAGACTAA+AGG | + | chr3_1:85148906-85148925 | None:intergenic | 35.0% | |
| !!! | TTTAGTCTTCTCTAGGGTTT+TGG | - | chr3_1:85148905-85148924 | Msa0382510:five_prime_UTR | 35.0% |
| GAAAAAAACAATCCTTCCCA+AGG | + | chr3_1:85148965-85148984 | None:intergenic | 35.0% | |
| !!! | ACCAAGCCCTAGTTTTTTTT+AGG | - | chr3_1:85148986-85149005 | Msa0382510:five_prime_UTR | 35.0% |
| GTTAAGGATTGTCAAAGGTG+TGG | + | chr3_1:85145611-85145630 | None:intergenic | 40.0% | |
| CAGAAGAAACCTCAAAGAAG+AGG | + | chr3_1:85145739-85145758 | None:intergenic | 40.0% | |
| ! | TGTGTGTTTGATTTCTCAGG+AGG | - | chr3_1:85146425-85146444 | Msa0382510:CDS | 40.0% |
| ! | GGAGGTGATGATTTTTGTAC+TGG | - | chr3_1:85146443-85146462 | Msa0382510:CDS | 40.0% |
| !! | AAGCGAGATCTCTTTTGAAG+AGG | + | chr3_1:85146542-85146561 | None:intergenic | 40.0% |
| ! | AATGTCCCATTTGACTTCAG+TGG | - | chr3_1:85146563-85146582 | Msa0382510:CDS | 40.0% |
| !! | ATCTCAAAGAGGCATTCATC+AGG | + | chr3_1:85146635-85146654 | None:intergenic | 40.0% |
| ! | ACCTTCTAAGGATCTCAAAG+AGG | + | chr3_1:85146646-85146665 | None:intergenic | 40.0% |
| GTTGCTGCAGATTTCATTCT+TGG | + | chr3_1:85146741-85146760 | None:intergenic | 40.0% | |
| GACGGTGACAATCAAGAATT+TGG | - | chr3_1:85146779-85146798 | Msa0382510:CDS | 40.0% | |
| TATCTTTCTCGAAGCTTGGA+GGG | - | chr3_1:85146812-85146831 | Msa0382510:CDS | 40.0% | |
| GAGTGAAAGACTTCAGAGAA+GGG | + | chr3_1:85146979-85146998 | None:intergenic | 40.0% | |
| AGAGTGAAAGACTTCAGAGA+AGG | + | chr3_1:85146980-85146999 | None:intergenic | 40.0% | |
| !! | CTCTGAAGTCTTTCACTCTT+TGG | - | chr3_1:85146981-85147000 | Msa0382510:CDS | 40.0% |
| GTTGCTACCATTAGTGACAA+AGG | - | chr3_1:85147007-85147026 | Msa0382510:CDS | 40.0% | |
| GATCAAGCCTTTGTCACTAA+TGG | + | chr3_1:85147017-85147036 | None:intergenic | 40.0% | |
| GTTGCCAACAATTTCTGACA+AGG | - | chr3_1:85147084-85147103 | Msa0382510:CDS | 40.0% | |
| ATAGAGTCATGTCCTAGCAT+CGG | - | chr3_1:85147154-85147173 | Msa0382510:CDS | 40.0% | |
| TTTCTCGGTGACATTTGGAA+GGG | + | chr3_1:85147398-85147417 | None:intergenic | 40.0% | |
| AATCCTTTCTCGGTGACATT+TGG | + | chr3_1:85147403-85147422 | None:intergenic | 40.0% | |
| AACTAACGTCGCTCACAATT+GGG | - | chr3_1:85147455-85147474 | Msa0382510:CDS | 40.0% | |
| TGTGCATTTCTGTCAGACAA+TGG | - | chr3_1:85147559-85147578 | Msa0382510:CDS | 40.0% | |
| GTGCATTTCTGTCAGACAAT+GGG | - | chr3_1:85147560-85147579 | Msa0382510:CDS | 40.0% | |
| TATGGCACTCTTCCAATTGT+AGG | + | chr3_1:85147624-85147643 | None:intergenic | 40.0% | |
| !! | TACAATTGGAAGAGTGCCAT+AGG | - | chr3_1:85147623-85147642 | Msa0382510:CDS | 40.0% |
| TGCCATAGGATTACCCAATT+TGG | - | chr3_1:85147637-85147656 | Msa0382510:CDS | 40.0% | |
| GCCATAGGATTACCCAATTT+GGG | - | chr3_1:85147638-85147657 | Msa0382510:CDS | 40.0% | |
| CCATAGGATTACCCAATTTG+GGG | - | chr3_1:85147639-85147658 | Msa0382510:CDS | 40.0% | |
| ! | ACCACGGTTTAAAATGACAC+CGG | + | chr3_1:85147668-85147687 | None:intergenic | 40.0% |
| AAACCGTGGTGCAAAATTGA+AGG | - | chr3_1:85147678-85147697 | Msa0382510:CDS | 40.0% | |
| GAAGCAGTGAAATAAACCCT+GGG | + | chr3_1:85147897-85147916 | None:intergenic | 40.0% | |
| TGAAGCAGTGAAATAAACCC+TGG | + | chr3_1:85147898-85147917 | None:intergenic | 40.0% | |
| GGTTTATTTCACTGCTTCAG+AGG | - | chr3_1:85147899-85147918 | Msa0382510:CDS | 40.0% | |
| TGCATCAATCTGACAGATGT+AGG | - | chr3_1:85147958-85147977 | Msa0382510:CDS | 40.0% | |
| !! | AGATGTAGGAGTTTTGTCCA+TGG | - | chr3_1:85147972-85147991 | Msa0382510:CDS | 40.0% |
| AAGTTGCATTGTTCGACTCT+TGG | - | chr3_1:85147997-85148016 | Msa0382510:CDS | 40.0% | |
| ! | CTTGGAGTGCTAAACCTTAA+TGG | - | chr3_1:85148015-85148034 | Msa0382510:CDS | 40.0% |
| ATTGTCTGCAATTGCTGTCA+AGG | + | chr3_1:85148064-85148083 | None:intergenic | 40.0% | |
| GATATCTATACCGCAGAATC+TGG | - | chr3_1:85148357-85148376 | Msa0382510:intron | 40.0% | |
| !! | TGCTCTGGAAAAAGAGAACT+GGG | + | chr3_1:85148472-85148491 | None:intergenic | 40.0% |
| !! | ATGCTCTGGAAAAAGAGAAC+TGG | + | chr3_1:85148473-85148492 | None:intergenic | 40.0% |
| GATTGAACAACTGTATGCTC+TGG | + | chr3_1:85148487-85148506 | None:intergenic | 40.0% | |
| !!! | TTTTTTGGCATCCTGTTGAC+GGG | - | chr3_1:85148556-85148575 | Msa0382510:intron | 40.0% |
| AGTTACTGGGTCCTGAATTT+AGG | - | chr3_1:85148617-85148636 | Msa0382510:intron | 40.0% | |
| AAATGGCGCGAAAAAACATC+AGG | + | chr3_1:85148662-85148681 | None:intergenic | 40.0% | |
| !! | TTTTTCGCGCCATTTTGCAT+CGG | - | chr3_1:85148667-85148686 | Msa0382510:intron | 40.0% |
| TACAGACTGCTGTGAAAACA+CGG | + | chr3_1:85148717-85148736 | None:intergenic | 40.0% | |
| TGACAGTTCAGAGTTGTATG+GGG | - | chr3_1:85148880-85148899 | Msa0382510:five_prime_UTR | 40.0% | |
| ! | TCGCAACAATCTTTTTCCCT+TGG | - | chr3_1:85148945-85148964 | Msa0382510:five_prime_UTR | 40.0% |
| ! | CGCAACAATCTTTTTCCCTT+GGG | - | chr3_1:85148946-85148965 | Msa0382510:five_prime_UTR | 40.0% |
| ! | ACAATCTTTTTCCCTTGGGA+AGG | - | chr3_1:85148950-85148969 | Msa0382510:five_prime_UTR | 40.0% |
| GCCTAAAAAAAACTAGGGCT+TGG | + | chr3_1:85148990-85149009 | None:intergenic | 40.0% | |
| TTGGGTACATTGAGTGTGAC+AGG | + | chr3_1:85145557-85145576 | None:intergenic | 45.0% | |
| GAGAGAGACCCTATGAGATA+GGG | + | chr3_1:85145671-85145690 | None:intergenic | 45.0% | |
| AGAGAGAGACCCTATGAGAT+AGG | + | chr3_1:85145672-85145691 | None:intergenic | 45.0% | |
| !! | GCCTCTTTGAGATCCTTAGA+AGG | - | chr3_1:85146642-85146661 | Msa0382510:CDS | 45.0% |
| ATCCTTAGAAGGTTGCCTGA+AGG | - | chr3_1:85146653-85146672 | Msa0382510:CDS | 45.0% | |
| AAGCTCCTATCTTGTCCTTC+AGG | + | chr3_1:85146671-85146690 | None:intergenic | 45.0% | |
| !! | CAACGCAAGTTCTGGAAACA+AGG | - | chr3_1:85146757-85146776 | Msa0382510:CDS | 45.0% |
| !! | GCAAGTTCTGGAAACAAGGA+CGG | - | chr3_1:85146761-85146780 | Msa0382510:CDS | 45.0% |
| AGGCTATCTTTCTCGAAGCT+TGG | - | chr3_1:85146808-85146827 | Msa0382510:CDS | 45.0% | |
| CTATCTTTCTCGAAGCTTGG+AGG | - | chr3_1:85146811-85146830 | Msa0382510:CDS | 45.0% | |
| ATCTTTCTCGAAGCTTGGAG+GGG | - | chr3_1:85146813-85146832 | Msa0382510:CDS | 45.0% | |
| AGATTGTGTGCCAACAGCAA+TGG | + | chr3_1:85146867-85146886 | None:intergenic | 45.0% | |
| ACACAATCTCGAGGAGGATT+AGG | - | chr3_1:85146878-85146897 | Msa0382510:CDS | 45.0% | |
| CACAATCTCGAGGAGGATTA+GGG | - | chr3_1:85146879-85146898 | Msa0382510:CDS | 45.0% | |
| CTTGAGACCTACATCAGTCA+AGG | + | chr3_1:85146939-85146958 | None:intergenic | 45.0% | |
| CTTGACTGATGTAGGTCTCA+AGG | - | chr3_1:85146937-85146956 | Msa0382510:CDS | 45.0% | |
| GGCTTGATCGAGATTGCTAA+TGG | - | chr3_1:85147028-85147047 | Msa0382510:CDS | 45.0% | |
| !! | TGTCCTAGCATCGGTAATGA+AGG | - | chr3_1:85147163-85147182 | Msa0382510:CDS | 45.0% |
| AGACCTTCATTACCGATGCT+AGG | + | chr3_1:85147169-85147188 | None:intergenic | 45.0% | |
| CTTTCTCGGTGACATTTGGA+AGG | + | chr3_1:85147399-85147418 | None:intergenic | 45.0% | |
| CTTCCAAATGTCACCGAGAA+AGG | - | chr3_1:85147397-85147416 | Msa0382510:CDS | 45.0% | |
| ATGTCACCGAGAAAGGATTC+TGG | - | chr3_1:85147404-85147423 | Msa0382510:CDS | 45.0% | |
| TGTCACCGAGAAAGGATTCT+GGG | - | chr3_1:85147405-85147424 | Msa0382510:CDS | 45.0% | |
| CATCACCCAGAATCCTTTCT+CGG | + | chr3_1:85147413-85147432 | None:intergenic | 45.0% | |
| GAGAAAGGATTCTGGGTGAT+GGG | - | chr3_1:85147412-85147431 | Msa0382510:CDS | 45.0% | |
| CAACTAACGTCGCTCACAAT+TGG | - | chr3_1:85147454-85147473 | Msa0382510:CDS | 45.0% | |
| TGCCCTGGAGTAACAGATAT+TGG | - | chr3_1:85147481-85147500 | Msa0382510:CDS | 45.0% | |
| GCCCTGGAGTAACAGATATT+GGG | - | chr3_1:85147482-85147501 | Msa0382510:CDS | 45.0% | |
| GCCCAATATCTGTTACTCCA+GGG | + | chr3_1:85147486-85147505 | None:intergenic | 45.0% | |
| AGCCCAATATCTGTTACTCC+AGG | + | chr3_1:85147487-85147506 | None:intergenic | 45.0% | |
| GATATTGGGCTTGAAGCTGT+AGG | - | chr3_1:85147496-85147515 | Msa0382510:CDS | 45.0% | |
| ATTTCTGTCAGACAATGGGC+TGG | - | chr3_1:85147564-85147583 | Msa0382510:CDS | 45.0% | |
| CCCCAAATTGGGTAATCCTA+TGG | + | chr3_1:85147642-85147661 | None:intergenic | 45.0% | |
| ! | ATTACCCAATTTGGGGTTGC+CGG | - | chr3_1:85147646-85147665 | Msa0382510:CDS | 45.0% |
| ! | GAGCCTTCAATTTTGCACCA+CGG | + | chr3_1:85147684-85147703 | None:intergenic | 45.0% |
| CTTACTCTGGTAAGCTGCTA+CGG | - | chr3_1:85147703-85147722 | Msa0382510:CDS | 45.0% | |
| TTACTCTGGTAAGCTGCTAC+GGG | - | chr3_1:85147704-85147723 | Msa0382510:CDS | 45.0% | |
| TTATCAATCCGTAACTGCCC+TGG | - | chr3_1:85147784-85147803 | Msa0382510:CDS | 45.0% | |
| TTGAGGGAATAACAGACCCA+GGG | - | chr3_1:85147878-85147897 | Msa0382510:CDS | 45.0% | |
| TTCACTGCTTCAGAGGTCTA+AGG | - | chr3_1:85147906-85147925 | Msa0382510:CDS | 45.0% | |
| CGAACAATGCAACTTGACCA+TGG | + | chr3_1:85147992-85148011 | None:intergenic | 45.0% | |
| CTGGATGTACTTTCTTTGGC+AGG | - | chr3_1:85148171-85148190 | Msa0382510:CDS | 45.0% | |
| TTCTTTGGCAGGTTGCTCAT+TGG | - | chr3_1:85148182-85148201 | Msa0382510:CDS | 45.0% | |
| AAAATTGGGTGATTCCCTCG+AGG | - | chr3_1:85148233-85148252 | Msa0382510:intron | 45.0% | |
| AAATTGGGTGATTCCCTCGA+GGG | - | chr3_1:85148234-85148253 | Msa0382510:intron | 45.0% | |
| !! | CCACAAGCTTGTTAACTGTG+CGG | + | chr3_1:85148293-85148312 | None:intergenic | 45.0% |
| ACAAGCTTGTGGAACATCTC+TGG | - | chr3_1:85148301-85148320 | Msa0382510:intron | 45.0% | |
| ! | TGTTGGCGAGGTAGTGTTTT+TGG | - | chr3_1:85148409-85148428 | Msa0382510:intron | 45.0% |
| ! | GTTGGCGAGGTAGTGTTTTT+GGG | - | chr3_1:85148410-85148429 | Msa0382510:intron | 45.0% |
| GTGGCAAAACCGATGCAAAA+TGG | + | chr3_1:85148679-85148698 | None:intergenic | 45.0% | |
| AACACGGGAACAACGAAACA+TGG | + | chr3_1:85148701-85148720 | None:intergenic | 45.0% | |
| ACAGACTGCTGTGAAAACAC+GGG | + | chr3_1:85148716-85148735 | None:intergenic | 45.0% | |
| GTACCAAAGTTTGTCCAGAG+TGG | - | chr3_1:85148734-85148753 | Msa0382510:intron | 45.0% | |
| CAACCACTCTGGACAAACTT+TGG | + | chr3_1:85148740-85148759 | None:intergenic | 45.0% | |
| CAAAGTTTGTCCAGAGTGGT+TGG | - | chr3_1:85148738-85148757 | Msa0382510:intron | 45.0% | |
| TGTTCTGTACGCGATGTTTG+TGG | - | chr3_1:85148792-85148811 | Msa0382510:intron | 45.0% | |
| !! | TGTGGTCGCAGTTTTAGTCA+AGG | - | chr3_1:85148810-85148829 | Msa0382510:intron | 45.0% |
| !! | GTGGTCGCAGTTTTAGTCAA+GGG | - | chr3_1:85148811-85148830 | Msa0382510:intron | 45.0% |
| !! | TGGTCGCAGTTTTAGTCAAG+GGG | - | chr3_1:85148812-85148831 | Msa0382510:intron | 45.0% |
| GTCGATGTACCTTAACCCGA+AGG | - | chr3_1:85146469-85146488 | Msa0382510:CDS | 50.0% | |
| GATGTACCTTAACCCGAAGG+AGG | - | chr3_1:85146472-85146491 | Msa0382510:CDS | 50.0% | |
| GTCCTTCAGGCAACCTTCTA+AGG | + | chr3_1:85146658-85146677 | None:intergenic | 50.0% | |
| GGTTGCCTGAAGGACAAGAT+AGG | - | chr3_1:85146663-85146682 | Msa0382510:CDS | 50.0% | |
| ATCTGCAGCAACGCAAGTTC+TGG | - | chr3_1:85146749-85146768 | Msa0382510:CDS | 50.0% | |
| TCGAAGCTTGGAGGGGAAAA+AGG | - | chr3_1:85146820-85146839 | Msa0382510:CDS | 50.0% | |
| ! | AGACTAGCTGCCATTGCTGT+TGG | - | chr3_1:85146854-85146873 | Msa0382510:CDS | 50.0% |
| ACATCAGTCAAGGCACGATC+TGG | + | chr3_1:85146929-85146948 | None:intergenic | 50.0% | |
| GATCGTGCCTTGACTGATGT+AGG | - | chr3_1:85146929-85146948 | Msa0382510:CDS | 50.0% | |
| TGTCCTGGAGTTCGTGATCA+GGG | - | chr3_1:85147241-85147260 | Msa0382510:CDS | 50.0% | |
| ATTCCCTGATCACGAACTCC+AGG | + | chr3_1:85147247-85147266 | None:intergenic | 50.0% | |
| GTTCGTGATCAGGGAATTGC+TGG | - | chr3_1:85147250-85147269 | Msa0382510:CDS | 50.0% | |
| CGAGAAAGGATTCTGGGTGA+TGG | - | chr3_1:85147411-85147430 | Msa0382510:CDS | 50.0% | |
| !! | GGATTCTGGGTGATGGGTAA+TGG | - | chr3_1:85147418-85147437 | Msa0382510:CDS | 50.0% |
| ACGTTAGTTGCTGCAGTGCA+TGG | + | chr3_1:85147444-85147463 | None:intergenic | 50.0% | |
| TGGGCTTGAAGCTGTAGGAA+AGG | - | chr3_1:85147501-85147520 | Msa0382510:CDS | 50.0% | |
| GGGCTTGAAGCTGTAGGAAA+GGG | - | chr3_1:85147502-85147521 | Msa0382510:CDS | 50.0% | |
| CACAATTGATGGAGCAGCCT+TGG | + | chr3_1:85147599-85147618 | None:intergenic | 50.0% | |
| !!! | GCCGGTGTCATTTTAAACCG+TGG | - | chr3_1:85147664-85147683 | Msa0382510:CDS | 50.0% |
| GTCTGACATGGAGATACTGC+TGG | + | chr3_1:85147754-85147773 | None:intergenic | 50.0% | |
| TACCAACTCCAGGGCAGTTA+CGG | + | chr3_1:85147795-85147814 | None:intergenic | 50.0% | |
| CTTGAGGGAATAACAGACCC+AGG | - | chr3_1:85147877-85147896 | Msa0382510:CDS | 50.0% | |
| ! | TCAGAGGTCTAAGGCCAGTT+TGG | - | chr3_1:85147915-85147934 | Msa0382510:CDS | 50.0% |
| ! | CAGAGGTCTAAGGCCAGTTT+GGG | - | chr3_1:85147916-85147935 | Msa0382510:CDS | 50.0% |
| ! | TGCATCGGTGATTGCACACT+CGG | + | chr3_1:85148115-85148134 | None:intergenic | 50.0% |
| AGTGTGCAATCACCGATGCA+GGG | - | chr3_1:85148115-85148134 | Msa0382510:CDS | 50.0% | |
| AAGGGCAGAAATCCCTGCAT+CGG | + | chr3_1:85148130-85148149 | None:intergenic | 50.0% | |
| GAACAGGACTCCACGAGTAA+GGG | + | chr3_1:85148148-85148167 | None:intergenic | 50.0% | |
| TGAACAGGACTCCACGAGTA+AGG | + | chr3_1:85148149-85148168 | None:intergenic | 50.0% | |
| TCGTGGAGTCCTGTTCAATC+TGG | - | chr3_1:85148152-85148171 | Msa0382510:CDS | 50.0% | |
| CCGCACAGTTAACAAGCTTG+TGG | - | chr3_1:85148290-85148309 | Msa0382510:intron | 50.0% | |
| TGTGACATCCTCTTCTGAGC+AGG | - | chr3_1:85148327-85148346 | Msa0382510:intron | 50.0% | |
| TTGGGTCCATCAGTTATCGG+TGG | - | chr3_1:85148428-85148447 | Msa0382510:intron | 50.0% | |
| TGGGTCCATCAGTTATCGGT+GGG | - | chr3_1:85148429-85148448 | Msa0382510:intron | 50.0% | |
| CAAGACCCACCGATAACTGA+TGG | + | chr3_1:85148437-85148456 | None:intergenic | 50.0% | |
| CATCAGTTATCGGTGGGTCT+TGG | - | chr3_1:85148435-85148454 | Msa0382510:intron | 50.0% | |
| AAAAGCAGCATCCCGTCAAC+AGG | + | chr3_1:85148570-85148589 | None:intergenic | 50.0% | |
| ACGGGAACAACGAAACATGG+TGG | + | chr3_1:85148698-85148717 | None:intergenic | 50.0% | |
| TGGGTTAACACCAACCACTC+TGG | + | chr3_1:85148751-85148770 | None:intergenic | 50.0% | |
| ! | TGGGGCCTTTAGTCTTCTCT+AGG | - | chr3_1:85148898-85148917 | Msa0382510:five_prime_UTR | 50.0% |
| ! | GGGGCCTTTAGTCTTCTCTA+GGG | - | chr3_1:85148899-85148918 | Msa0382510:five_prime_UTR | 50.0% |
| GTACCTTAACCCGAAGGAGG+CGG | - | chr3_1:85146475-85146494 | Msa0382510:CDS | 55.0% | |
| TACCTTAACCCGAAGGAGGC+GGG | - | chr3_1:85146476-85146495 | Msa0382510:CDS | 55.0% | |
| AAGAAGAGACCCGCCTCCTT+CGG | + | chr3_1:85146488-85146507 | None:intergenic | 55.0% | |
| GCGGGTCTCTTCTTGTCTCT+TGG | - | chr3_1:85146494-85146513 | Msa0382510:CDS | 55.0% | |
| GTGCTTCTGTATCCAAGCGC+TGG | - | chr3_1:85146693-85146712 | Msa0382510:CDS | 55.0% | |
| GCTGTTGGCACACAATCTCG+AGG | - | chr3_1:85146869-85146888 | Msa0382510:CDS | 55.0% | |
| GTTGGCACACAATCTCGAGG+AGG | - | chr3_1:85146872-85146891 | Msa0382510:CDS | 55.0% | |
| GGTCTCAAGGCAGTTGCTCA+TGG | - | chr3_1:85146950-85146969 | Msa0382510:CDS | 55.0% | |
| CTGTCCTGGAGTTCGTGATC+AGG | - | chr3_1:85147240-85147259 | Msa0382510:CDS | 55.0% | |
| !! | TGGGCTGGTATCGTTCACCA+AGG | - | chr3_1:85147579-85147598 | Msa0382510:CDS | 55.0% |
| GACACCGGCAACCCCAAATT+GGG | + | chr3_1:85147653-85147672 | None:intergenic | 55.0% | |
| TGACACCGGCAACCCCAAAT+TGG | + | chr3_1:85147654-85147673 | None:intergenic | 55.0% | |
| ATCCGTAACTGCCCTGGAGT+TGG | - | chr3_1:85147790-85147809 | Msa0382510:CDS | 55.0% | |
| GCATAGGACAGAGCTTCCCA+AGG | + | chr3_1:85147834-85147853 | None:intergenic | 55.0% | |
| GAGTGTGCAATCACCGATGC+AGG | - | chr3_1:85148114-85148133 | Msa0382510:CDS | 55.0% | |
| GGGATTTCTGCCCTTACTCG+TGG | - | chr3_1:85148135-85148154 | Msa0382510:CDS | 55.0% | |
| CAAGGCTACCTGCTCAGAAG+AGG | + | chr3_1:85148338-85148357 | None:intergenic | 55.0% | |
| AGCAGGCTACCCAGATTCTG+CGG | + | chr3_1:85148370-85148389 | None:intergenic | 55.0% | |
| AGAAGAGACCCGCCTCCTTC+GGG | + | chr3_1:85146487-85146506 | None:intergenic | 60.0% | |
| ! | TAGAAGCGTGAGCCAGCGCT+TGG | + | chr3_1:85146708-85146727 | None:intergenic | 60.0% |
| CTCACAATTGGGCTGTGCCC+TGG | - | chr3_1:85147466-85147485 | Msa0382510:CDS | 60.0% | |
| ! | GACCCGCCTCCTTCGGGTTA+AGG | + | chr3_1:85146481-85146500 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85145489 | 85149172 | 85145489 | ID=Msa0382510;Name=Msa0382510 |
| chr3_1 | mRNA | 85145489 | 85149172 | 85145489 | ID=Msa0382510-mRNA-1;Parent=Msa0382510;Name=Msa0382510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=318|1|1|1|1|1|2|828|641 |
| chr3_1 | exon | 85145489 | 85148217 | 85145489 | ID=Msa0382510-mRNA-1:exon:22282;Parent=Msa0382510-mRNA-1 |
| chr3_1 | exon | 85148830 | 85149172 | 85148830 | ID=Msa0382510-mRNA-1:exon:22281;Parent=Msa0382510-mRNA-1 |
| chr3_1 | five_prime_UTR | 85148855 | 85149172 | 85148855 | ID=Msa0382510-mRNA-1:five_prime_utr;Parent=Msa0382510-mRNA-1 |
| chr3_1 | CDS | 85148830 | 85148854 | 85148830 | ID=Msa0382510-mRNA-1:cds;Parent=Msa0382510-mRNA-1 |
| chr3_1 | CDS | 85146317 | 85148217 | 85146317 | ID=Msa0382510-mRNA-1:cds;Parent=Msa0382510-mRNA-1 |
| chr3_1 | three_prime_UTR | 85145489 | 85146316 | 85145489 | ID=Msa0382510-mRNA-1:three_prime_utr;Parent=Msa0382510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
