AlfalfaGEDB | Msa1087070

M. sativa cultivar zhongmu-4 / Msa1087070

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087070	AES86353.1	96.591	88	0	1	1	85	288	375	1.16e-47	165

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087070	G7JVL6	96.591	88	0	1	1	85	288	375	5.53e-48	165

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1087070	0.863479	2.418196e-64	-8.615850e-47
Msa0002690	Msa1087070	0.810015	1.422245e-50	-8.615850e-47
Msa0002700	Msa1087070	0.802759	4.816961e-49	-8.615850e-47
Msa0004180	Msa1087070	0.830792	2.405930e-55	-8.615850e-47
Msa0007810	Msa1087070	0.801384	9.237799e-49	-8.615850e-47
Msa0011410	Msa1087070	0.821463	3.983896e-53	-8.615850e-47
Msa0011440	Msa1087070	0.843510	1.340533e-58	-8.615850e-47
Msa0011450	Msa1087070	0.838674	2.499821e-57	-8.615850e-47
Msa0013270	Msa1087070	-0.806079	9.790270e-50	-8.615850e-47
Msa0016380	Msa1087070	0.816495	5.370956e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 40 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTAAGGGTTCCTCCGCA+AGG	0.559471	7_2:+87698954	None:intergenic
AACCTTGCGGAGGAACCCTT+AGG	0.515988	7_2:-87698956	Msa1087070:CDS
AACGAAGTACCCGCGCGAGC+AGG	0.426901	7_2:+87698861	None:intergenic
ACCTAGCCTCCTCCGTCCCT+CGG	0.407009	7_2:-87699072	Msa1087070:intron
ACGAAGTACCCGCGCGAGCA+GGG	0.565436	7_2:+87698862	None:intergenic
ACGCCTTTCGGCCTGATCTT+AGG	0.275595	7_2:-87699002	Msa1087070:CDS
ACTACCCCTTGTTGGTCCCG+AGG	0.625318	7_2:+87699055	None:intergenic
AGGCCCTGACTCACCCTCCG+TGG	0.655611	7_2:-87698982	Msa1087070:CDS
AGGCCGAAAGGCGTAGTCGA+TGG	0.572797	7_2:+87699011	None:intergenic
AGGCGTAGTCGATGGACAAC+AGG	0.473069	7_2:+87699019	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTACCCTGAAAAAACA+GGG	-	chr7_2:87699159-87699178	Msa1087070:intron	35.0%
TTCTTACCCTGAAAAAACAG+GGG	-	chr7_2:87699160-87699179	Msa1087070:intron	35.0%
TTGAACCGATAACCATCTTT+CGG	-	chr7_2:87699196-87699215	Msa1087070:intron	35.0%
CGACTGTTTACCAAAAACAC+AGG	+	chr7_2:87698883-87698902	None:intergenic	40.0%
TCGAACGACCTTCAACAAAA+GGG	+	chr7_2:87699055-87699074	None:intergenic	40.0%
CCTTCTTACCCTGAAAAAAC+AGG	-	chr7_2:87699158-87699177	Msa1087070:intron	40.0%
GTTAGCCGAAAGATGGTTAT+CGG	+	chr7_2:87699204-87699223	None:intergenic	40.0%
CAAAATAGCCCCGTAACTTC+GGG	+	chr7_2:87698953-87698972	None:intergenic	45.0%
GCAAAATAGCCCCGTAACTT+CGG	+	chr7_2:87698954-87698973	None:intergenic	45.0%
GGTAGGTAGAGAATACCTAG+GGG	+	chr7_2:87699005-87699024	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	87698857	87699459	87698857	ID=Msa1087070;Name=Msa1087070
chr7_2	mRNA	87698857	87699459	87698857	ID=Msa1087070-mRNA-1;Parent=Msa1087070;Name=Msa1087070-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|1\|0\|0\|2\|0\|85
chr7_2	exon	87699434	87699459	87699434	ID=Msa1087070-mRNA-1:exon:24009;Parent=Msa1087070-mRNA-1
chr7_2	exon	87698857	87699088	87698857	ID=Msa1087070-mRNA-1:exon:24008;Parent=Msa1087070-mRNA-1
chr7_2	CDS	87699434	87699459	87699434	ID=Msa1087070-mRNA-1:cds;Parent=Msa1087070-mRNA-1
chr7_2	CDS	87698857	87699088	87698857	ID=Msa1087070-mRNA-1:cds;Parent=Msa1087070-mRNA-1

Gene Sequence	>Msa1087070 ATGGTCTTACGACTTTGCGGAGACCTCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCAACCCTGCTCGCGCGGGTACTTCGTTCTAA
Protein sequence	>Msa1087070 MVLRLCGDLLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSNPARAGTSF*