AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354520 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354520 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354520 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354520 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354520 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:+311006 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:-310065 Msa1354520:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:-310360 Msa1354520:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:+310993 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:-310606 Msa1354520:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:+310030 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:+309766 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:-310411 Msa1354520:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:-310627 Msa1354520:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:+310094 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:-310266 Msa1354520:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:-309641 Msa1354520:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:-309681 Msa1354520:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:+309598 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:+310234 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:+310361 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:-310267 Msa1354520:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:-310359 Msa1354520:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:-309688 Msa1354520:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:-310615 Msa1354520:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:-310574 Msa1354520:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:+309632 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:-310118 Msa1354520:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:+310274 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:-309635 Msa1354520:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:+310329 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:-309696 Msa1354520:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:+309622 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:-309630 Msa1354520:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:-309695 Msa1354520:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:-310836 Msa1354520:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:-311053 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:+310328 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:-309665 Msa1354520:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:+310398 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:+310014 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:+310387 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:+309677 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:-310117 Msa1354520:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:-310009 Msa1354520:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:+310265 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:-309595 Msa1354520:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:+311015 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:+310596 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:-310102 Msa1354520:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:+309639 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:-310575 Msa1354520:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:-309726 Msa1354520:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:-310591 Msa1354520:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:+309767 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:+309654 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:+309730 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:-310811 Msa1354520:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:-309634 Msa1354520:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:+309684 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:+309790 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:+310303 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:-310605 Msa1354520:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:+310031 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:+310117 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:+309729 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:+309778 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:+310807 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:-309763 Msa1354520:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:+309662 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:-309710 Msa1354520:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:+310078 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:+310079 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:-310265 Msa1354520:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:-310002 Msa1354520:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:+310362 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:+309785 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:+310288 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:-310340 Msa1354520:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:+310264 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:+309599 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:-310095 Msa1354520:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:+310323 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:+309687 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:-309764 Msa1354520:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:-310597 Msa1354520:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:+309626 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:+310619 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:+309710 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:-310321 Msa1354520:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:+309753 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:-310019 Msa1354520:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:+310069 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:+310118 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:+310087 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:-310604 Msa1354520:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:+309702 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:-309759 Msa1354520:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:-311032 Msa1354520:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:+310050 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:+310404 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:+310269 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:+310403 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:+310349 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:+310620 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:+309600 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:+311023 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:+310038 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:-310573 Msa1354520:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:+309655 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:+310056 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:-311048 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:+310324 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:+309818 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:+310002 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:-309743 Msa1354520:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:-310417 Msa1354520:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:+310110 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:+310059 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:+309601 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:+310003 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:+310422 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:-310299 Msa1354520:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:-310612 Msa1354520:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:+310032 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:-309694 Msa1354520:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:-310318 Msa1354520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0014543:309779-309798 Msa1354520:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0014543:309779-309798 Msa1354520:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0014543:309903-309922 Msa1354520:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0014543:309944-309963 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0014543:310392-310411 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0014543:309903-309922 Msa1354520:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0014543:309944-309963 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0014543:310392-310411 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0014543:309653-309672 Msa1354520:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0014543:309908-309927 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0014543:310384-310403 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0014543:310393-310412 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0014543:311019-311038 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0014543:309653-309672 Msa1354520:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0014543:309908-309927 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0014543:310384-310403 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0014543:310393-310412 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0014543:311019-311038 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0014543:309612-309631 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0014543:309617-309636 Msa1354520:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0014543:309625-309644 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0014543:309717-309736 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0014543:309717-309736 Msa1354520:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0014543:309804-309823 Msa1354520:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0014543:309811-309830 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0014543:309820-309839 Msa1354520:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0014543:309834-309853 Msa1354520:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0014543:309898-309917 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0014543:309938-309957 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0014543:310041-310060 Msa1354520:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0014543:310289-310308 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0014543:310398-310417 Msa1354520:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0014543:310586-310605 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0014543:310587-310606 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0014543:310588-310607 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0014543:310800-310819 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0014543:310889-310908 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0014543:310889-310908 Msa1354520:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0014543:310905-310924 Msa1354520:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0014543:311018-311037 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0014543:311020-311039 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0014543:311020-311039 Msa1354520:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0014543:309612-309631 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0014543:309617-309636 Msa1354520:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0014543:309625-309644 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0014543:309717-309736 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0014543:309717-309736 Msa1354520:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0014543:309804-309823 Msa1354520:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0014543:309811-309830 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0014543:309820-309839 Msa1354520:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0014543:309834-309853 Msa1354520:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0014543:309898-309917 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0014543:309938-309957 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0014543:310041-310060 Msa1354520:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0014543:310289-310308 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0014543:310398-310417 Msa1354520:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0014543:310586-310605 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0014543:310587-310606 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0014543:310588-310607 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0014543:310800-310819 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0014543:310889-310908 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0014543:310889-310908 Msa1354520:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0014543:310905-310924 Msa1354520:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0014543:311018-311037 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0014543:311020-311039 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0014543:311020-311039 Msa1354520:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0014543:309603-309622 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0014543:309670-309689 Msa1354520:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0014543:309675-309694 Msa1354520:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0014543:309680-309699 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0014543:309718-309737 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0014543:309716-309735 Msa1354520:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0014543:309722-309741 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0014543:309721-309740 Msa1354520:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0014543:309722-309741 Msa1354520:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0014543:309843-309862 Msa1354520:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0014543:309872-309891 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0014543:310040-310059 Msa1354520:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0014543:310042-310061 Msa1354520:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0014543:310123-310142 Msa1354520:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0014543:310256-310275 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0014543:310256-310275 Msa1354520:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0014543:310290-310309 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0014543:310294-310313 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0014543:310295-310314 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0014543:310294-310313 Msa1354520:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0014543:310639-310658 Msa1354520:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0014543:310749-310768 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0014543:310750-310769 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0014543:310749-310768 Msa1354520:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0014543:310750-310769 Msa1354520:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0014543:310764-310783 Msa1354520:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0014543:310888-310907 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0014543:310908-310927 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0014543:310963-310982 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0014543:310974-310993 Msa1354520:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0014543:311017-311036 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0014543:311036-311055 Msa1354520:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0014543:309603-309622 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0014543:309670-309689 Msa1354520:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0014543:309675-309694 Msa1354520:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0014543:309680-309699 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0014543:309718-309737 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0014543:309716-309735 Msa1354520:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0014543:309722-309741 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0014543:309721-309740 Msa1354520:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0014543:309722-309741 Msa1354520:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0014543:309843-309862 Msa1354520:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0014543:309872-309891 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0014543:310040-310059 Msa1354520:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0014543:310042-310061 Msa1354520:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0014543:310123-310142 Msa1354520:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0014543:310256-310275 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0014543:310256-310275 Msa1354520:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0014543:310290-310309 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0014543:310294-310313 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0014543:310295-310314 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0014543:310294-310313 Msa1354520:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0014543:310639-310658 Msa1354520:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0014543:310749-310768 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0014543:310750-310769 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0014543:310749-310768 Msa1354520:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0014543:310750-310769 Msa1354520:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0014543:310764-310783 Msa1354520:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0014543:310888-310907 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0014543:310908-310927 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0014543:310963-310982 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0014543:310974-310993 Msa1354520:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0014543:311017-311036 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0014543:311036-311055 Msa1354520:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0014543:309685-309704 Msa1354520:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0014543:309726-309745 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0014543:309723-309742 Msa1354520:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0014543:309724-309743 Msa1354520:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0014543:309988-310007 Msa1354520:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0014543:309998-310017 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0014543:309999-310018 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0014543:310130-310149 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0014543:310170-310189 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0014543:310220-310239 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0014543:310231-310250 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0014543:310257-310276 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0014543:310255-310274 Msa1354520:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0014543:310297-310316 Msa1354520:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0014543:310330-310349 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0014543:310562-310581 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0014543:310580-310599 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0014543:310615-310634 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0014543:310656-310675 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0014543:310653-310672 Msa1354520:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0014543:310701-310720 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0014543:310729-310748 Msa1354520:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0014543:310730-310749 Msa1354520:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0014543:310737-310756 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0014543:310840-310859 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0014543:310851-310870 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0014543:310851-310870 Msa1354520:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0014543:310916-310935 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0014543:310964-310983 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0014543:310979-310998 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0014543:310981-311000 Msa1354520:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0014543:309685-309704 Msa1354520:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0014543:309726-309745 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0014543:309723-309742 Msa1354520:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0014543:309724-309743 Msa1354520:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0014543:309988-310007 Msa1354520:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0014543:309998-310017 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0014543:309999-310018 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0014543:310130-310149 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0014543:310170-310189 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0014543:310220-310239 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0014543:310231-310250 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0014543:310257-310276 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0014543:310255-310274 Msa1354520:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0014543:310297-310316 Msa1354520:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0014543:310330-310349 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0014543:310562-310581 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0014543:310580-310599 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0014543:310615-310634 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0014543:310656-310675 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0014543:310653-310672 Msa1354520:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0014543:310701-310720 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0014543:310729-310748 Msa1354520:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0014543:310730-310749 Msa1354520:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0014543:310737-310756 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0014543:310840-310859 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0014543:310851-310870 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0014543:310851-310870 Msa1354520:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0014543:310916-310935 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0014543:310964-310983 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0014543:310979-310998 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0014543:310981-311000 Msa1354520:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0014543:309595-309614 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0014543:309727-309746 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0014543:309731-309750 Msa1354520:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0014543:309856-309875 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0014543:309963-309982 Msa1354520:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0014543:309964-309983 Msa1354520:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0014543:310000-310019 Msa1354520:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0014543:310003-310022 Msa1354520:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0014543:310046-310065 Msa1354520:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0014543:310106-310125 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0014543:310119-310138 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0014543:310120-310139 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0014543:310134-310153 Msa1354520:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0014543:310164-310183 Msa1354520:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0014543:310169-310188 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0014543:310169-310188 Msa1354520:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0014543:310175-310194 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0014543:310196-310215 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0014543:310198-310217 Msa1354520:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0014543:310204-310223 Msa1354520:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0014543:310214-310233 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0014543:310215-310234 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0014543:310269-310288 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0014543:310344-310363 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0014543:310349-310368 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0014543:310348-310367 Msa1354520:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0014543:310349-310368 Msa1354520:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0014543:310354-310373 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0014543:310439-310458 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0014543:310500-310519 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0014543:310498-310517 Msa1354520:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0014543:310508-310527 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0014543:310531-310550 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0014543:310539-310558 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0014543:310540-310559 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0014543:310549-310568 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0014543:310550-310569 Msa1354520:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0014543:310551-310570 Msa1354520:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0014543:310596-310615 Msa1354520:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0014543:310604-310623 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0014543:310606-310625 Msa1354520:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0014543:310616-310635 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0014543:310613-310632 Msa1354520:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0014543:310690-310709 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0014543:310714-310733 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0014543:310738-310757 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0014543:310744-310763 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0014543:310852-310871 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0014543:310852-310871 Msa1354520:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0014543:310865-310884 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0014543:310956-310975 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0014543:310980-310999 Msa1354520:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0014543:309595-309614 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0014543:309727-309746 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0014543:309731-309750 Msa1354520:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0014543:309856-309875 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0014543:309963-309982 Msa1354520:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0014543:309964-309983 Msa1354520:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0014543:310000-310019 Msa1354520:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0014543:310003-310022 Msa1354520:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0014543:310046-310065 Msa1354520:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0014543:310106-310125 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0014543:310119-310138 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0014543:310120-310139 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0014543:310134-310153 Msa1354520:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0014543:310164-310183 Msa1354520:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0014543:310169-310188 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0014543:310169-310188 Msa1354520:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0014543:310175-310194 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0014543:310196-310215 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0014543:310198-310217 Msa1354520:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0014543:310204-310223 Msa1354520:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0014543:310214-310233 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0014543:310215-310234 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0014543:310269-310288 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0014543:310344-310363 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0014543:310349-310368 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0014543:310348-310367 Msa1354520:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0014543:310349-310368 Msa1354520:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0014543:310354-310373 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0014543:310439-310458 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0014543:310500-310519 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0014543:310498-310517 Msa1354520:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0014543:310508-310527 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0014543:310531-310550 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0014543:310539-310558 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0014543:310540-310559 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0014543:310549-310568 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0014543:310550-310569 Msa1354520:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0014543:310551-310570 Msa1354520:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0014543:310596-310615 Msa1354520:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0014543:310604-310623 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0014543:310606-310625 Msa1354520:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0014543:310616-310635 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0014543:310613-310632 Msa1354520:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0014543:310690-310709 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0014543:310714-310733 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0014543:310738-310757 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0014543:310744-310763 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0014543:310852-310871 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0014543:310852-310871 Msa1354520:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0014543:310865-310884 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0014543:310956-310975 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0014543:310980-310999 Msa1354520:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0014543:309583-309602 Msa1354520:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0014543:309704-309723 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0014543:309711-309730 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0014543:309737-309756 Msa1354520:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0014543:309965-309984 Msa1354520:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0014543:310010-310029 Msa1354520:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0014543:310011-310030 Msa1354520:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0014543:310024-310043 Msa1354520:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0014543:310045-310064 Msa1354520:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0014543:310090-310109 Msa1354520:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0014543:310111-310130 Msa1354520:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0014543:310165-310184 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0014543:310163-310182 Msa1354520:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0014543:310353-310372 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0014543:310350-310369 Msa1354520:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0014543:310430-310449 Msa1354520:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0014543:310456-310475 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0014543:310454-310473 Msa1354520:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0014543:310455-310474 Msa1354520:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0014543:310497-310516 Msa1354520:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0014543:310501-310520 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0014543:310554-310573 Msa1354520:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0014543:310559-310578 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0014543:310686-310705 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0014543:310687-310706 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0014543:310688-310707 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0014543:310689-310708 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0014543:310710-310729 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0014543:310717-310736 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0014543:310770-310789 Msa1354520:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0014543:310785-310804 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0014543:310828-310847 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0014543:310856-310875 Msa1354520:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0014543:310872-310891 Msa1354520:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0014543:310919-310938 Msa1354520:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0014543:310986-311005 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0014543:310985-311004 Msa1354520:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0014543:309583-309602 Msa1354520:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0014543:309704-309723 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0014543:309711-309730 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0014543:309737-309756 Msa1354520:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0014543:309965-309984 Msa1354520:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0014543:310010-310029 Msa1354520:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0014543:310011-310030 Msa1354520:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0014543:310024-310043 Msa1354520:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0014543:310045-310064 Msa1354520:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0014543:310090-310109 Msa1354520:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0014543:310111-310130 Msa1354520:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0014543:310165-310184 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0014543:310163-310182 Msa1354520:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0014543:310353-310372 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0014543:310350-310369 Msa1354520:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0014543:310430-310449 Msa1354520:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0014543:310456-310475 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0014543:310454-310473 Msa1354520:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0014543:310455-310474 Msa1354520:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0014543:310497-310516 Msa1354520:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0014543:310501-310520 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0014543:310554-310573 Msa1354520:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0014543:310559-310578 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0014543:310686-310705 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0014543:310687-310706 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0014543:310688-310707 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0014543:310689-310708 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0014543:310710-310729 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0014543:310717-310736 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0014543:310770-310789 Msa1354520:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0014543:310785-310804 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0014543:310828-310847 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0014543:310856-310875 Msa1354520:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0014543:310872-310891 Msa1354520:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0014543:310919-310938 Msa1354520:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0014543:310986-311005 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0014543:310985-311004 Msa1354520:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0014543:309980-309999 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0014543:309981-310000 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0014543:309982-310001 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0014543:310009-310028 Msa1354520:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0014543:310018-310037 Msa1354520:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0014543:310022-310041 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0014543:310101-310120 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0014543:310148-310167 Msa1354520:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0014543:310275-310294 Msa1354520:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0014543:310315-310334 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0014543:310316-310335 Msa1354520:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0014543:310410-310429 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0014543:310411-310430 Msa1354520:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0014543:310424-310443 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0014543:310425-310444 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0014543:310429-310448 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0014543:310458-310477 Msa1354520:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0014543:310459-310478 Msa1354520:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0014543:310467-310486 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0014543:310513-310532 Msa1354520:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0014543:310524-310543 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0014543:310568-310587 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0014543:310685-310704 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0014543:310706-310725 Msa1354520:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0014543:310833-310852 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0014543:310920-310939 Msa1354520:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0014543:310950-310969 Msa1354520:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0014543:311004-311023 Msa1354520:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0014543:309980-309999 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0014543:309981-310000 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0014543:309982-310001 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0014543:310009-310028 Msa1354520:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0014543:310018-310037 Msa1354520:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0014543:310022-310041 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0014543:310101-310120 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0014543:310148-310167 Msa1354520:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0014543:310275-310294 Msa1354520:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0014543:310315-310334 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0014543:310316-310335 Msa1354520:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0014543:310410-310429 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0014543:310411-310430 Msa1354520:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0014543:310424-310443 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0014543:310425-310444 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0014543:310429-310448 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0014543:310458-310477 Msa1354520:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0014543:310459-310478 Msa1354520:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0014543:310467-310486 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0014543:310513-310532 Msa1354520:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0014543:310524-310543 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0014543:310568-310587 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0014543:310685-310704 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0014543:310706-310725 Msa1354520:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0014543:310833-310852 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0014543:310920-310939 Msa1354520:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0014543:310950-310969 Msa1354520:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0014543:311004-311023 Msa1354520:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0014543:309976-309995 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0014543:310153-310172 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0014543:310420-310439 Msa1354520:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0014543:310468-310487 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0014543:310520-310539 Msa1354520:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0014543:310668-310687 Msa1354520:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0014543:310921-310940 Msa1354520:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0014543:310931-310950 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0014543:310934-310953 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0014543:310934-310953 Msa1354520:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0014543:309976-309995 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0014543:310153-310172 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0014543:310420-310439 Msa1354520:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0014543:310468-310487 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0014543:310520-310539 Msa1354520:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0014543:310668-310687 Msa1354520:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0014543:310921-310940 Msa1354520:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0014543:310931-310950 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0014543:310934-310953 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0014543:310934-310953 Msa1354520:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0014543:310672-310691 Msa1354520:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0014543:310927-310946 Msa1354520:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0014543:310941-310960 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0014543:310992-311011 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0014543:310996-311015 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0014543:310672-310691 Msa1354520:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0014543:310927-310946 Msa1354520:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0014543:310941-310960 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0014543:310992-311011 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0014543:310996-311015 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0014543:310675-310694 Msa1354520:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0014543:310675-310694 Msa1354520:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 309576 311061 309576 ID=Msa1354520;Name=Msa1354520
tig0014543 mRNA 309576 311061 309576 ID=Msa1354520-mRNA-1;Parent=Msa1354520;Name=Msa1354520-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 311005 311061 311005 ID=Msa1354520-mRNA-1:exon:9148;Parent=Msa1354520-mRNA-1
tig0014543 exon 310812 310886 310812 ID=Msa1354520-mRNA-1:exon:9147;Parent=Msa1354520-mRNA-1
tig0014543 exon 310574 310652 310574 ID=Msa1354520-mRNA-1:exon:9146;Parent=Msa1354520-mRNA-1
tig0014543 exon 310242 310452 310242 ID=Msa1354520-mRNA-1:exon:9145;Parent=Msa1354520-mRNA-1
tig0014543 exon 310003 310147 310003 ID=Msa1354520-mRNA-1:exon:9144;Parent=Msa1354520-mRNA-1
tig0014543 exon 309576 309851 309576 ID=Msa1354520-mRNA-1:exon:9143;Parent=Msa1354520-mRNA-1
tig0014543 CDS 311005 311061 311005 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
tig0014543 CDS 310812 310886 310812 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
tig0014543 CDS 310574 310652 310574 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
tig0014543 CDS 310242 310452 310242 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
tig0014543 CDS 310003 310147 310003 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
tig0014543 CDS 309576 309851 309576 ID=Msa1354520-mRNA-1:cds;Parent=Msa1354520-mRNA-1
Gene Sequence

>Msa1354520

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354520

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*