AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354650 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354650 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354650 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354650 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354650 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:+411101 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:-410160 Msa1354650:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:-410455 Msa1354650:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:+411088 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:-410701 Msa1354650:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:+410125 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:+409861 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:-410506 Msa1354650:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:-410722 Msa1354650:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:+410189 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:-410361 Msa1354650:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:-409736 Msa1354650:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:-409776 Msa1354650:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:+409693 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:+410329 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:+410456 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:-410362 Msa1354650:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:-410454 Msa1354650:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:-409783 Msa1354650:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:-410710 Msa1354650:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:-410669 Msa1354650:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:+409727 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:-410213 Msa1354650:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:+410369 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:-409730 Msa1354650:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:+410424 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:-409791 Msa1354650:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:+409717 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:-409725 Msa1354650:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:-409790 Msa1354650:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:-410931 Msa1354650:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:-411148 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:+410423 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:-409760 Msa1354650:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:+410493 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:+410109 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:+410482 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:+409772 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:-410212 Msa1354650:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:-410104 Msa1354650:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:+410360 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:-409690 Msa1354650:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:+411110 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:+410691 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:-410197 Msa1354650:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:+409734 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:-410670 Msa1354650:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:-409821 Msa1354650:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:-410686 Msa1354650:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:+409862 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:+409749 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:+409825 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:-410906 Msa1354650:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:-409729 Msa1354650:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:+409779 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:+409885 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:+410398 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:-410700 Msa1354650:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:+410126 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:+410212 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:+409824 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:+409873 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:+410902 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:-409858 Msa1354650:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:+409757 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:-409805 Msa1354650:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:+410173 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:+410174 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:-410360 Msa1354650:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:-410097 Msa1354650:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:+410457 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:+409880 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:+410383 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:-410435 Msa1354650:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:+410359 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:+409694 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:-410190 Msa1354650:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:+410418 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:+409782 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:-409859 Msa1354650:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:-410692 Msa1354650:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:+409721 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:+410714 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:+409805 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:-410416 Msa1354650:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:+409848 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:-410114 Msa1354650:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:+410164 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:+410213 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:+410182 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:-410699 Msa1354650:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:+409797 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:-409854 Msa1354650:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:-411127 Msa1354650:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:+410145 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:+410499 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:+410364 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:+410498 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:+410444 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:+410715 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:+409695 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:+411118 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:+410133 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:-410668 Msa1354650:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:+409750 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:+410151 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:-411143 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:+410419 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:+409913 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:+410097 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:-409838 Msa1354650:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:-410512 Msa1354650:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:+410205 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:+410154 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:+409696 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:+410098 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:+410517 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:-410394 Msa1354650:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:-410707 Msa1354650:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:+410127 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:-409789 Msa1354650:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:-410413 Msa1354650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0014543:409874-409893 Msa1354650:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0014543:409874-409893 Msa1354650:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0014543:409998-410017 Msa1354650:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0014543:410039-410058 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0014543:410487-410506 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0014543:409998-410017 Msa1354650:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0014543:410039-410058 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0014543:410487-410506 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0014543:409748-409767 Msa1354650:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0014543:410003-410022 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0014543:410479-410498 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0014543:410488-410507 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0014543:411114-411133 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0014543:409748-409767 Msa1354650:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0014543:410003-410022 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0014543:410479-410498 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0014543:410488-410507 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0014543:411114-411133 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0014543:409707-409726 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0014543:409712-409731 Msa1354650:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0014543:409720-409739 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0014543:409812-409831 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0014543:409812-409831 Msa1354650:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0014543:409899-409918 Msa1354650:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0014543:409906-409925 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0014543:409915-409934 Msa1354650:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0014543:409929-409948 Msa1354650:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0014543:409993-410012 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0014543:410033-410052 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0014543:410136-410155 Msa1354650:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0014543:410384-410403 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0014543:410493-410512 Msa1354650:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0014543:410681-410700 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0014543:410682-410701 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0014543:410683-410702 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0014543:410895-410914 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0014543:410984-411003 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0014543:410984-411003 Msa1354650:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0014543:411000-411019 Msa1354650:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0014543:411113-411132 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0014543:411115-411134 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0014543:411115-411134 Msa1354650:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0014543:409707-409726 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0014543:409712-409731 Msa1354650:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0014543:409720-409739 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0014543:409812-409831 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0014543:409812-409831 Msa1354650:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0014543:409899-409918 Msa1354650:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0014543:409906-409925 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0014543:409915-409934 Msa1354650:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0014543:409929-409948 Msa1354650:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0014543:409993-410012 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0014543:410033-410052 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0014543:410136-410155 Msa1354650:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0014543:410384-410403 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0014543:410493-410512 Msa1354650:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0014543:410681-410700 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0014543:410682-410701 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0014543:410683-410702 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0014543:410895-410914 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0014543:410984-411003 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0014543:410984-411003 Msa1354650:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0014543:411000-411019 Msa1354650:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0014543:411113-411132 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0014543:411115-411134 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0014543:411115-411134 Msa1354650:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0014543:409698-409717 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0014543:409765-409784 Msa1354650:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0014543:409770-409789 Msa1354650:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0014543:409775-409794 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0014543:409813-409832 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0014543:409811-409830 Msa1354650:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0014543:409817-409836 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0014543:409816-409835 Msa1354650:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0014543:409817-409836 Msa1354650:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0014543:409938-409957 Msa1354650:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0014543:409967-409986 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0014543:410135-410154 Msa1354650:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0014543:410137-410156 Msa1354650:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0014543:410218-410237 Msa1354650:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0014543:410351-410370 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0014543:410351-410370 Msa1354650:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0014543:410385-410404 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0014543:410389-410408 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0014543:410390-410409 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0014543:410389-410408 Msa1354650:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0014543:410734-410753 Msa1354650:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0014543:410844-410863 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0014543:410845-410864 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0014543:410844-410863 Msa1354650:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0014543:410845-410864 Msa1354650:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0014543:410859-410878 Msa1354650:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0014543:410983-411002 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0014543:411003-411022 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0014543:411058-411077 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0014543:411069-411088 Msa1354650:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0014543:411112-411131 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0014543:411131-411150 Msa1354650:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0014543:409698-409717 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0014543:409765-409784 Msa1354650:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0014543:409770-409789 Msa1354650:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0014543:409775-409794 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0014543:409813-409832 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0014543:409811-409830 Msa1354650:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0014543:409817-409836 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0014543:409816-409835 Msa1354650:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0014543:409817-409836 Msa1354650:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0014543:409938-409957 Msa1354650:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0014543:409967-409986 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0014543:410135-410154 Msa1354650:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0014543:410137-410156 Msa1354650:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0014543:410218-410237 Msa1354650:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0014543:410351-410370 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0014543:410351-410370 Msa1354650:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0014543:410385-410404 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0014543:410389-410408 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0014543:410390-410409 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0014543:410389-410408 Msa1354650:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0014543:410734-410753 Msa1354650:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0014543:410844-410863 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0014543:410845-410864 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0014543:410844-410863 Msa1354650:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0014543:410845-410864 Msa1354650:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0014543:410859-410878 Msa1354650:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0014543:410983-411002 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0014543:411003-411022 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0014543:411058-411077 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0014543:411069-411088 Msa1354650:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0014543:411112-411131 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0014543:411131-411150 Msa1354650:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0014543:409780-409799 Msa1354650:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0014543:409821-409840 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0014543:409818-409837 Msa1354650:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0014543:409819-409838 Msa1354650:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0014543:410083-410102 Msa1354650:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0014543:410093-410112 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0014543:410094-410113 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0014543:410225-410244 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0014543:410265-410284 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0014543:410315-410334 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0014543:410326-410345 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0014543:410352-410371 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0014543:410350-410369 Msa1354650:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0014543:410392-410411 Msa1354650:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0014543:410425-410444 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0014543:410657-410676 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0014543:410675-410694 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0014543:410710-410729 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0014543:410751-410770 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0014543:410748-410767 Msa1354650:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0014543:410796-410815 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0014543:410824-410843 Msa1354650:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0014543:410825-410844 Msa1354650:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0014543:410832-410851 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0014543:410935-410954 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0014543:410946-410965 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0014543:410946-410965 Msa1354650:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0014543:411011-411030 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0014543:411059-411078 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0014543:411074-411093 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0014543:411076-411095 Msa1354650:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0014543:409780-409799 Msa1354650:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0014543:409821-409840 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0014543:409818-409837 Msa1354650:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0014543:409819-409838 Msa1354650:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0014543:410083-410102 Msa1354650:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0014543:410093-410112 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0014543:410094-410113 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0014543:410225-410244 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0014543:410265-410284 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0014543:410315-410334 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0014543:410326-410345 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0014543:410352-410371 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0014543:410350-410369 Msa1354650:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0014543:410392-410411 Msa1354650:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0014543:410425-410444 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0014543:410657-410676 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0014543:410675-410694 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0014543:410710-410729 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0014543:410751-410770 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0014543:410748-410767 Msa1354650:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0014543:410796-410815 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0014543:410824-410843 Msa1354650:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0014543:410825-410844 Msa1354650:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0014543:410832-410851 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0014543:410935-410954 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0014543:410946-410965 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0014543:410946-410965 Msa1354650:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0014543:411011-411030 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0014543:411059-411078 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0014543:411074-411093 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0014543:411076-411095 Msa1354650:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0014543:409690-409709 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0014543:409822-409841 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0014543:409826-409845 Msa1354650:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0014543:409951-409970 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0014543:410058-410077 Msa1354650:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0014543:410059-410078 Msa1354650:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0014543:410095-410114 Msa1354650:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0014543:410098-410117 Msa1354650:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0014543:410141-410160 Msa1354650:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0014543:410201-410220 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0014543:410214-410233 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0014543:410215-410234 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0014543:410229-410248 Msa1354650:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0014543:410259-410278 Msa1354650:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0014543:410264-410283 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0014543:410264-410283 Msa1354650:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0014543:410270-410289 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0014543:410291-410310 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0014543:410293-410312 Msa1354650:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0014543:410299-410318 Msa1354650:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0014543:410309-410328 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0014543:410310-410329 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0014543:410364-410383 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0014543:410439-410458 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0014543:410444-410463 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0014543:410443-410462 Msa1354650:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0014543:410444-410463 Msa1354650:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0014543:410449-410468 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0014543:410534-410553 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0014543:410595-410614 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0014543:410593-410612 Msa1354650:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0014543:410603-410622 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0014543:410626-410645 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0014543:410634-410653 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0014543:410635-410654 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0014543:410644-410663 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0014543:410645-410664 Msa1354650:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0014543:410646-410665 Msa1354650:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0014543:410691-410710 Msa1354650:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0014543:410699-410718 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0014543:410701-410720 Msa1354650:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0014543:410711-410730 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0014543:410708-410727 Msa1354650:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0014543:410785-410804 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0014543:410809-410828 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0014543:410833-410852 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0014543:410839-410858 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0014543:410947-410966 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0014543:410947-410966 Msa1354650:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0014543:410960-410979 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0014543:411051-411070 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0014543:411075-411094 Msa1354650:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0014543:409690-409709 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0014543:409822-409841 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0014543:409826-409845 Msa1354650:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0014543:409951-409970 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0014543:410058-410077 Msa1354650:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0014543:410059-410078 Msa1354650:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0014543:410095-410114 Msa1354650:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0014543:410098-410117 Msa1354650:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0014543:410141-410160 Msa1354650:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0014543:410201-410220 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0014543:410214-410233 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0014543:410215-410234 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0014543:410229-410248 Msa1354650:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0014543:410259-410278 Msa1354650:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0014543:410264-410283 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0014543:410264-410283 Msa1354650:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0014543:410270-410289 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0014543:410291-410310 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0014543:410293-410312 Msa1354650:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0014543:410299-410318 Msa1354650:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0014543:410309-410328 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0014543:410310-410329 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0014543:410364-410383 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0014543:410439-410458 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0014543:410444-410463 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0014543:410443-410462 Msa1354650:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0014543:410444-410463 Msa1354650:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0014543:410449-410468 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0014543:410534-410553 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0014543:410595-410614 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0014543:410593-410612 Msa1354650:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0014543:410603-410622 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0014543:410626-410645 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0014543:410634-410653 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0014543:410635-410654 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0014543:410644-410663 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0014543:410645-410664 Msa1354650:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0014543:410646-410665 Msa1354650:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0014543:410691-410710 Msa1354650:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0014543:410699-410718 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0014543:410701-410720 Msa1354650:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0014543:410711-410730 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0014543:410708-410727 Msa1354650:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0014543:410785-410804 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0014543:410809-410828 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0014543:410833-410852 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0014543:410839-410858 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0014543:410947-410966 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0014543:410947-410966 Msa1354650:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0014543:410960-410979 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0014543:411051-411070 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0014543:411075-411094 Msa1354650:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0014543:409678-409697 Msa1354650:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0014543:409799-409818 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0014543:409806-409825 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0014543:409832-409851 Msa1354650:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0014543:410060-410079 Msa1354650:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0014543:410105-410124 Msa1354650:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0014543:410106-410125 Msa1354650:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0014543:410119-410138 Msa1354650:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0014543:410140-410159 Msa1354650:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0014543:410185-410204 Msa1354650:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0014543:410206-410225 Msa1354650:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0014543:410260-410279 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0014543:410258-410277 Msa1354650:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0014543:410448-410467 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0014543:410445-410464 Msa1354650:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0014543:410525-410544 Msa1354650:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0014543:410551-410570 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0014543:410549-410568 Msa1354650:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0014543:410550-410569 Msa1354650:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0014543:410592-410611 Msa1354650:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0014543:410596-410615 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0014543:410649-410668 Msa1354650:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0014543:410654-410673 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0014543:410781-410800 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0014543:410782-410801 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0014543:410783-410802 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0014543:410784-410803 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0014543:410805-410824 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0014543:410812-410831 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0014543:410865-410884 Msa1354650:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0014543:410880-410899 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0014543:410923-410942 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0014543:410951-410970 Msa1354650:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0014543:410967-410986 Msa1354650:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0014543:411014-411033 Msa1354650:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0014543:411081-411100 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0014543:411080-411099 Msa1354650:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0014543:409678-409697 Msa1354650:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0014543:409799-409818 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0014543:409806-409825 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0014543:409832-409851 Msa1354650:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0014543:410060-410079 Msa1354650:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0014543:410105-410124 Msa1354650:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0014543:410106-410125 Msa1354650:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0014543:410119-410138 Msa1354650:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0014543:410140-410159 Msa1354650:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0014543:410185-410204 Msa1354650:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0014543:410206-410225 Msa1354650:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0014543:410260-410279 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0014543:410258-410277 Msa1354650:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0014543:410448-410467 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0014543:410445-410464 Msa1354650:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0014543:410525-410544 Msa1354650:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0014543:410551-410570 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0014543:410549-410568 Msa1354650:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0014543:410550-410569 Msa1354650:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0014543:410592-410611 Msa1354650:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0014543:410596-410615 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0014543:410649-410668 Msa1354650:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0014543:410654-410673 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0014543:410781-410800 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0014543:410782-410801 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0014543:410783-410802 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0014543:410784-410803 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0014543:410805-410824 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0014543:410812-410831 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0014543:410865-410884 Msa1354650:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0014543:410880-410899 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0014543:410923-410942 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0014543:410951-410970 Msa1354650:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0014543:410967-410986 Msa1354650:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0014543:411014-411033 Msa1354650:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0014543:411081-411100 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0014543:411080-411099 Msa1354650:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0014543:410075-410094 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0014543:410076-410095 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0014543:410077-410096 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0014543:410104-410123 Msa1354650:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0014543:410113-410132 Msa1354650:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0014543:410117-410136 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0014543:410196-410215 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0014543:410243-410262 Msa1354650:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0014543:410370-410389 Msa1354650:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0014543:410410-410429 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0014543:410411-410430 Msa1354650:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0014543:410505-410524 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0014543:410506-410525 Msa1354650:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0014543:410519-410538 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0014543:410520-410539 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0014543:410524-410543 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0014543:410553-410572 Msa1354650:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0014543:410554-410573 Msa1354650:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0014543:410562-410581 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0014543:410608-410627 Msa1354650:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0014543:410619-410638 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0014543:410663-410682 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0014543:410780-410799 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0014543:410801-410820 Msa1354650:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0014543:410928-410947 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0014543:411015-411034 Msa1354650:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0014543:411045-411064 Msa1354650:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0014543:411099-411118 Msa1354650:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0014543:410075-410094 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0014543:410076-410095 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0014543:410077-410096 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0014543:410104-410123 Msa1354650:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0014543:410113-410132 Msa1354650:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0014543:410117-410136 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0014543:410196-410215 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0014543:410243-410262 Msa1354650:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0014543:410370-410389 Msa1354650:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0014543:410410-410429 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0014543:410411-410430 Msa1354650:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0014543:410505-410524 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0014543:410506-410525 Msa1354650:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0014543:410519-410538 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0014543:410520-410539 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0014543:410524-410543 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0014543:410553-410572 Msa1354650:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0014543:410554-410573 Msa1354650:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0014543:410562-410581 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0014543:410608-410627 Msa1354650:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0014543:410619-410638 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0014543:410663-410682 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0014543:410780-410799 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0014543:410801-410820 Msa1354650:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0014543:410928-410947 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0014543:411015-411034 Msa1354650:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0014543:411045-411064 Msa1354650:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0014543:411099-411118 Msa1354650:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0014543:410071-410090 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0014543:410248-410267 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0014543:410515-410534 Msa1354650:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0014543:410563-410582 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0014543:410615-410634 Msa1354650:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0014543:410763-410782 Msa1354650:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0014543:411016-411035 Msa1354650:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0014543:411026-411045 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0014543:411029-411048 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0014543:411029-411048 Msa1354650:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0014543:410071-410090 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0014543:410248-410267 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0014543:410515-410534 Msa1354650:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0014543:410563-410582 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0014543:410615-410634 Msa1354650:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0014543:410763-410782 Msa1354650:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0014543:411016-411035 Msa1354650:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0014543:411026-411045 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0014543:411029-411048 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0014543:411029-411048 Msa1354650:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0014543:410767-410786 Msa1354650:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0014543:411022-411041 Msa1354650:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0014543:411036-411055 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0014543:411087-411106 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0014543:411091-411110 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0014543:410767-410786 Msa1354650:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0014543:411022-411041 Msa1354650:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0014543:411036-411055 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0014543:411087-411106 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0014543:411091-411110 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0014543:410770-410789 Msa1354650:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0014543:410770-410789 Msa1354650:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 409671 411156 409671 ID=Msa1354650;Name=Msa1354650
tig0014543 mRNA 409671 411156 409671 ID=Msa1354650-mRNA-1;Parent=Msa1354650;Name=Msa1354650-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 411100 411156 411100 ID=Msa1354650-mRNA-1:exon:9199;Parent=Msa1354650-mRNA-1
tig0014543 exon 410907 410981 410907 ID=Msa1354650-mRNA-1:exon:9198;Parent=Msa1354650-mRNA-1
tig0014543 exon 410669 410747 410669 ID=Msa1354650-mRNA-1:exon:9197;Parent=Msa1354650-mRNA-1
tig0014543 exon 410337 410547 410337 ID=Msa1354650-mRNA-1:exon:9196;Parent=Msa1354650-mRNA-1
tig0014543 exon 410098 410242 410098 ID=Msa1354650-mRNA-1:exon:9195;Parent=Msa1354650-mRNA-1
tig0014543 exon 409671 409946 409671 ID=Msa1354650-mRNA-1:exon:9194;Parent=Msa1354650-mRNA-1
tig0014543 CDS 411100 411156 411100 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
tig0014543 CDS 410907 410981 410907 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
tig0014543 CDS 410669 410747 410669 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
tig0014543 CDS 410337 410547 410337 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
tig0014543 CDS 410098 410242 410098 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
tig0014543 CDS 409671 409946 409671 ID=Msa1354650-mRNA-1:cds;Parent=Msa1354650-mRNA-1
Gene Sequence

>Msa1354650

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354650

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*