AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1391260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391260 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1391260 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1391260 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1391260 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1391260 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0021410:+115622 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0021410:-114681 Msa1391260:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0021410:-114976 Msa1391260:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0021410:+115609 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0021410:-115222 Msa1391260:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0021410:+114646 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0021410:+114382 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0021410:-115027 Msa1391260:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0021410:-115243 Msa1391260:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0021410:+114710 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0021410:-114882 Msa1391260:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0021410:-114257 Msa1391260:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0021410:-114297 Msa1391260:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0021410:+114214 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0021410:+114850 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0021410:+114977 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0021410:-114883 Msa1391260:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0021410:-114975 Msa1391260:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0021410:-114304 Msa1391260:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0021410:-115231 Msa1391260:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0021410:-115190 Msa1391260:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0021410:+114248 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0021410:-114734 Msa1391260:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0021410:+114890 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0021410:-114251 Msa1391260:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0021410:+114945 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0021410:-114312 Msa1391260:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0021410:+114238 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0021410:-114246 Msa1391260:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0021410:-114311 Msa1391260:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0021410:-115452 Msa1391260:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0021410:-115669 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0021410:+114944 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0021410:-114281 Msa1391260:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0021410:+115014 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0021410:+114630 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0021410:+115003 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0021410:+114293 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0021410:-114733 Msa1391260:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0021410:-114625 Msa1391260:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0021410:+114881 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0021410:-114211 Msa1391260:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0021410:+115631 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0021410:+115212 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0021410:-114718 Msa1391260:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0021410:+114255 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0021410:-115191 Msa1391260:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0021410:-114342 Msa1391260:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0021410:-115207 Msa1391260:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0021410:+114383 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0021410:+114270 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0021410:+114346 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0021410:-115427 Msa1391260:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0021410:-114250 Msa1391260:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0021410:+114300 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0021410:+114406 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0021410:+114919 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0021410:-115221 Msa1391260:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0021410:+114647 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0021410:+114733 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0021410:+114345 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0021410:+114394 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0021410:+115423 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0021410:-114379 Msa1391260:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0021410:+114278 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0021410:-114326 Msa1391260:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0021410:+114694 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0021410:+114695 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0021410:-114881 Msa1391260:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0021410:-114618 Msa1391260:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0021410:+114978 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0021410:+114401 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0021410:+114904 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0021410:-114956 Msa1391260:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0021410:+114880 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0021410:+114215 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0021410:-114711 Msa1391260:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0021410:+114939 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0021410:+114303 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0021410:-114380 Msa1391260:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0021410:-115213 Msa1391260:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0021410:+114242 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0021410:+115235 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0021410:+114326 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0021410:-114937 Msa1391260:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0021410:+114369 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0021410:-114635 Msa1391260:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0021410:+114685 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0021410:+114734 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0021410:+114703 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0021410:-115220 Msa1391260:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0021410:+114318 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0021410:-114375 Msa1391260:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0021410:-115648 Msa1391260:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0021410:+114666 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0021410:+115020 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0021410:+114885 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0021410:+115019 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0021410:+114965 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0021410:+115236 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0021410:+114216 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0021410:+115639 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0021410:+114654 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0021410:-115189 Msa1391260:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0021410:+114271 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0021410:+114672 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0021410:-115664 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0021410:+114940 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0021410:+114434 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0021410:+114618 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0021410:-114359 Msa1391260:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0021410:-115033 Msa1391260:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0021410:+114726 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0021410:+114675 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0021410:+114217 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0021410:+114619 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0021410:+115038 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0021410:-114915 Msa1391260:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0021410:-115228 Msa1391260:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0021410:+114648 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0021410:-114310 Msa1391260:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0021410:-114934 Msa1391260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0021410:114395-114414 Msa1391260:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0021410:114395-114414 Msa1391260:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0021410:114519-114538 Msa1391260:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0021410:114560-114579 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0021410:115008-115027 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0021410:114519-114538 Msa1391260:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0021410:114560-114579 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0021410:115008-115027 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0021410:114269-114288 Msa1391260:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0021410:114524-114543 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0021410:115000-115019 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0021410:115009-115028 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0021410:115635-115654 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0021410:114269-114288 Msa1391260:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0021410:114524-114543 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0021410:115000-115019 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0021410:115009-115028 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0021410:115635-115654 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0021410:114228-114247 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0021410:114233-114252 Msa1391260:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0021410:114241-114260 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0021410:114333-114352 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0021410:114333-114352 Msa1391260:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0021410:114420-114439 Msa1391260:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0021410:114427-114446 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0021410:114436-114455 Msa1391260:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0021410:114450-114469 Msa1391260:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0021410:114514-114533 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0021410:114554-114573 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0021410:114657-114676 Msa1391260:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0021410:114905-114924 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0021410:115014-115033 Msa1391260:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0021410:115202-115221 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0021410:115203-115222 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0021410:115204-115223 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0021410:115416-115435 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0021410:115505-115524 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0021410:115505-115524 Msa1391260:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0021410:115521-115540 Msa1391260:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0021410:115634-115653 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0021410:115636-115655 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0021410:115636-115655 Msa1391260:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0021410:114228-114247 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0021410:114233-114252 Msa1391260:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0021410:114241-114260 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0021410:114333-114352 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0021410:114333-114352 Msa1391260:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0021410:114420-114439 Msa1391260:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0021410:114427-114446 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0021410:114436-114455 Msa1391260:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0021410:114450-114469 Msa1391260:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0021410:114514-114533 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0021410:114554-114573 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0021410:114657-114676 Msa1391260:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0021410:114905-114924 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0021410:115014-115033 Msa1391260:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0021410:115202-115221 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0021410:115203-115222 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0021410:115204-115223 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0021410:115416-115435 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0021410:115505-115524 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0021410:115505-115524 Msa1391260:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0021410:115521-115540 Msa1391260:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0021410:115634-115653 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0021410:115636-115655 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0021410:115636-115655 Msa1391260:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0021410:114219-114238 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0021410:114286-114305 Msa1391260:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0021410:114291-114310 Msa1391260:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0021410:114296-114315 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0021410:114334-114353 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0021410:114332-114351 Msa1391260:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0021410:114338-114357 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0021410:114337-114356 Msa1391260:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0021410:114338-114357 Msa1391260:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0021410:114459-114478 Msa1391260:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0021410:114488-114507 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0021410:114656-114675 Msa1391260:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0021410:114658-114677 Msa1391260:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0021410:114739-114758 Msa1391260:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0021410:114872-114891 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0021410:114872-114891 Msa1391260:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0021410:114906-114925 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0021410:114910-114929 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0021410:114911-114930 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0021410:114910-114929 Msa1391260:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0021410:115255-115274 Msa1391260:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0021410:115365-115384 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0021410:115366-115385 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0021410:115365-115384 Msa1391260:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0021410:115366-115385 Msa1391260:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0021410:115380-115399 Msa1391260:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0021410:115504-115523 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0021410:115524-115543 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0021410:115579-115598 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0021410:115590-115609 Msa1391260:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0021410:115633-115652 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0021410:115652-115671 Msa1391260:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0021410:114219-114238 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0021410:114286-114305 Msa1391260:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0021410:114291-114310 Msa1391260:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0021410:114296-114315 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0021410:114334-114353 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0021410:114332-114351 Msa1391260:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0021410:114338-114357 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0021410:114337-114356 Msa1391260:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0021410:114338-114357 Msa1391260:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0021410:114459-114478 Msa1391260:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0021410:114488-114507 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0021410:114656-114675 Msa1391260:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0021410:114658-114677 Msa1391260:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0021410:114739-114758 Msa1391260:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0021410:114872-114891 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0021410:114872-114891 Msa1391260:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0021410:114906-114925 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0021410:114910-114929 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0021410:114911-114930 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0021410:114910-114929 Msa1391260:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0021410:115255-115274 Msa1391260:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0021410:115365-115384 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0021410:115366-115385 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0021410:115365-115384 Msa1391260:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0021410:115366-115385 Msa1391260:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0021410:115380-115399 Msa1391260:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0021410:115504-115523 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0021410:115524-115543 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0021410:115579-115598 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0021410:115590-115609 Msa1391260:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0021410:115633-115652 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0021410:115652-115671 Msa1391260:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0021410:114301-114320 Msa1391260:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0021410:114342-114361 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0021410:114339-114358 Msa1391260:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0021410:114340-114359 Msa1391260:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0021410:114604-114623 Msa1391260:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0021410:114614-114633 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0021410:114615-114634 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0021410:114746-114765 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0021410:114786-114805 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0021410:114836-114855 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0021410:114847-114866 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0021410:114873-114892 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0021410:114871-114890 Msa1391260:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0021410:114913-114932 Msa1391260:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0021410:114946-114965 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0021410:115178-115197 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0021410:115196-115215 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0021410:115231-115250 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0021410:115272-115291 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0021410:115269-115288 Msa1391260:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0021410:115317-115336 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0021410:115345-115364 Msa1391260:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0021410:115346-115365 Msa1391260:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0021410:115353-115372 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0021410:115456-115475 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0021410:115467-115486 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0021410:115467-115486 Msa1391260:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0021410:115532-115551 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0021410:115580-115599 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0021410:115595-115614 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0021410:115597-115616 Msa1391260:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0021410:114301-114320 Msa1391260:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0021410:114342-114361 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0021410:114339-114358 Msa1391260:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0021410:114340-114359 Msa1391260:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0021410:114604-114623 Msa1391260:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0021410:114614-114633 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0021410:114615-114634 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0021410:114746-114765 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0021410:114786-114805 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0021410:114836-114855 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0021410:114847-114866 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0021410:114873-114892 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0021410:114871-114890 Msa1391260:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0021410:114913-114932 Msa1391260:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0021410:114946-114965 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0021410:115178-115197 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0021410:115196-115215 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0021410:115231-115250 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0021410:115272-115291 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0021410:115269-115288 Msa1391260:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0021410:115317-115336 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0021410:115345-115364 Msa1391260:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0021410:115346-115365 Msa1391260:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0021410:115353-115372 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0021410:115456-115475 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0021410:115467-115486 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0021410:115467-115486 Msa1391260:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0021410:115532-115551 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0021410:115580-115599 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0021410:115595-115614 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0021410:115597-115616 Msa1391260:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0021410:114211-114230 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0021410:114343-114362 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0021410:114347-114366 Msa1391260:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0021410:114472-114491 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0021410:114579-114598 Msa1391260:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0021410:114580-114599 Msa1391260:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0021410:114616-114635 Msa1391260:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0021410:114619-114638 Msa1391260:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0021410:114662-114681 Msa1391260:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0021410:114722-114741 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0021410:114735-114754 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0021410:114736-114755 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0021410:114750-114769 Msa1391260:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0021410:114780-114799 Msa1391260:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0021410:114785-114804 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0021410:114785-114804 Msa1391260:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0021410:114791-114810 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0021410:114812-114831 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0021410:114814-114833 Msa1391260:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0021410:114820-114839 Msa1391260:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0021410:114830-114849 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0021410:114831-114850 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0021410:114885-114904 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0021410:114960-114979 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0021410:114965-114984 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0021410:114964-114983 Msa1391260:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0021410:114965-114984 Msa1391260:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0021410:114970-114989 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0021410:115055-115074 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0021410:115116-115135 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0021410:115114-115133 Msa1391260:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0021410:115124-115143 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0021410:115147-115166 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0021410:115155-115174 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0021410:115156-115175 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0021410:115165-115184 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0021410:115166-115185 Msa1391260:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0021410:115167-115186 Msa1391260:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0021410:115212-115231 Msa1391260:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0021410:115220-115239 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0021410:115222-115241 Msa1391260:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0021410:115232-115251 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0021410:115229-115248 Msa1391260:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0021410:115306-115325 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0021410:115330-115349 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0021410:115354-115373 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0021410:115360-115379 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0021410:115468-115487 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0021410:115468-115487 Msa1391260:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0021410:115481-115500 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0021410:115572-115591 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0021410:115596-115615 Msa1391260:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0021410:114211-114230 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0021410:114343-114362 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0021410:114347-114366 Msa1391260:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0021410:114472-114491 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0021410:114579-114598 Msa1391260:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0021410:114580-114599 Msa1391260:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0021410:114616-114635 Msa1391260:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0021410:114619-114638 Msa1391260:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0021410:114662-114681 Msa1391260:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0021410:114722-114741 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0021410:114735-114754 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0021410:114736-114755 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0021410:114750-114769 Msa1391260:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0021410:114780-114799 Msa1391260:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0021410:114785-114804 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0021410:114785-114804 Msa1391260:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0021410:114791-114810 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0021410:114812-114831 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0021410:114814-114833 Msa1391260:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0021410:114820-114839 Msa1391260:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0021410:114830-114849 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0021410:114831-114850 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0021410:114885-114904 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0021410:114960-114979 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0021410:114965-114984 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0021410:114964-114983 Msa1391260:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0021410:114965-114984 Msa1391260:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0021410:114970-114989 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0021410:115055-115074 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0021410:115116-115135 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0021410:115114-115133 Msa1391260:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0021410:115124-115143 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0021410:115147-115166 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0021410:115155-115174 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0021410:115156-115175 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0021410:115165-115184 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0021410:115166-115185 Msa1391260:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0021410:115167-115186 Msa1391260:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0021410:115212-115231 Msa1391260:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0021410:115220-115239 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0021410:115222-115241 Msa1391260:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0021410:115232-115251 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0021410:115229-115248 Msa1391260:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0021410:115306-115325 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0021410:115330-115349 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0021410:115354-115373 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0021410:115360-115379 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0021410:115468-115487 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0021410:115468-115487 Msa1391260:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0021410:115481-115500 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0021410:115572-115591 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0021410:115596-115615 Msa1391260:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0021410:114199-114218 Msa1391260:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0021410:114320-114339 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0021410:114327-114346 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0021410:114353-114372 Msa1391260:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0021410:114581-114600 Msa1391260:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0021410:114626-114645 Msa1391260:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0021410:114627-114646 Msa1391260:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0021410:114640-114659 Msa1391260:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0021410:114661-114680 Msa1391260:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0021410:114706-114725 Msa1391260:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0021410:114727-114746 Msa1391260:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0021410:114781-114800 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0021410:114779-114798 Msa1391260:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0021410:114969-114988 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0021410:114966-114985 Msa1391260:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0021410:115046-115065 Msa1391260:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0021410:115072-115091 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0021410:115070-115089 Msa1391260:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0021410:115071-115090 Msa1391260:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0021410:115113-115132 Msa1391260:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0021410:115117-115136 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0021410:115170-115189 Msa1391260:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0021410:115175-115194 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0021410:115302-115321 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0021410:115303-115322 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0021410:115304-115323 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0021410:115305-115324 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0021410:115326-115345 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0021410:115333-115352 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0021410:115386-115405 Msa1391260:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0021410:115401-115420 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0021410:115444-115463 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0021410:115472-115491 Msa1391260:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0021410:115488-115507 Msa1391260:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0021410:115535-115554 Msa1391260:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0021410:115602-115621 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0021410:115601-115620 Msa1391260:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0021410:114199-114218 Msa1391260:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0021410:114320-114339 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0021410:114327-114346 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0021410:114353-114372 Msa1391260:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0021410:114581-114600 Msa1391260:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0021410:114626-114645 Msa1391260:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0021410:114627-114646 Msa1391260:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0021410:114640-114659 Msa1391260:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0021410:114661-114680 Msa1391260:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0021410:114706-114725 Msa1391260:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0021410:114727-114746 Msa1391260:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0021410:114781-114800 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0021410:114779-114798 Msa1391260:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0021410:114969-114988 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0021410:114966-114985 Msa1391260:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0021410:115046-115065 Msa1391260:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0021410:115072-115091 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0021410:115070-115089 Msa1391260:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0021410:115071-115090 Msa1391260:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0021410:115113-115132 Msa1391260:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0021410:115117-115136 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0021410:115170-115189 Msa1391260:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0021410:115175-115194 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0021410:115302-115321 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0021410:115303-115322 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0021410:115304-115323 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0021410:115305-115324 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0021410:115326-115345 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0021410:115333-115352 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0021410:115386-115405 Msa1391260:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0021410:115401-115420 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0021410:115444-115463 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0021410:115472-115491 Msa1391260:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0021410:115488-115507 Msa1391260:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0021410:115535-115554 Msa1391260:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0021410:115602-115621 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0021410:115601-115620 Msa1391260:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0021410:114596-114615 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0021410:114597-114616 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0021410:114598-114617 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0021410:114625-114644 Msa1391260:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0021410:114634-114653 Msa1391260:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0021410:114638-114657 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0021410:114717-114736 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0021410:114764-114783 Msa1391260:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0021410:114891-114910 Msa1391260:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0021410:114931-114950 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0021410:114932-114951 Msa1391260:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0021410:115026-115045 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0021410:115027-115046 Msa1391260:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0021410:115040-115059 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0021410:115041-115060 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0021410:115045-115064 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0021410:115074-115093 Msa1391260:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0021410:115075-115094 Msa1391260:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0021410:115083-115102 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0021410:115129-115148 Msa1391260:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0021410:115140-115159 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0021410:115184-115203 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0021410:115301-115320 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0021410:115322-115341 Msa1391260:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0021410:115449-115468 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0021410:115536-115555 Msa1391260:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0021410:115566-115585 Msa1391260:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0021410:115620-115639 Msa1391260:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0021410:114596-114615 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0021410:114597-114616 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0021410:114598-114617 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0021410:114625-114644 Msa1391260:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0021410:114634-114653 Msa1391260:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0021410:114638-114657 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0021410:114717-114736 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0021410:114764-114783 Msa1391260:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0021410:114891-114910 Msa1391260:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0021410:114931-114950 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0021410:114932-114951 Msa1391260:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0021410:115026-115045 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0021410:115027-115046 Msa1391260:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0021410:115040-115059 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0021410:115041-115060 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0021410:115045-115064 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0021410:115074-115093 Msa1391260:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0021410:115075-115094 Msa1391260:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0021410:115083-115102 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0021410:115129-115148 Msa1391260:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0021410:115140-115159 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0021410:115184-115203 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0021410:115301-115320 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0021410:115322-115341 Msa1391260:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0021410:115449-115468 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0021410:115536-115555 Msa1391260:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0021410:115566-115585 Msa1391260:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0021410:115620-115639 Msa1391260:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0021410:114592-114611 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0021410:114769-114788 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0021410:115036-115055 Msa1391260:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0021410:115084-115103 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0021410:115136-115155 Msa1391260:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0021410:115284-115303 Msa1391260:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0021410:115537-115556 Msa1391260:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0021410:115547-115566 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0021410:115550-115569 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0021410:115550-115569 Msa1391260:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0021410:114592-114611 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0021410:114769-114788 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0021410:115036-115055 Msa1391260:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0021410:115084-115103 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0021410:115136-115155 Msa1391260:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0021410:115284-115303 Msa1391260:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0021410:115537-115556 Msa1391260:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0021410:115547-115566 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0021410:115550-115569 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0021410:115550-115569 Msa1391260:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0021410:115288-115307 Msa1391260:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0021410:115543-115562 Msa1391260:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0021410:115557-115576 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0021410:115608-115627 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0021410:115612-115631 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0021410:115288-115307 Msa1391260:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0021410:115543-115562 Msa1391260:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0021410:115557-115576 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0021410:115608-115627 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0021410:115612-115631 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0021410:115291-115310 Msa1391260:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0021410:115291-115310 Msa1391260:intron 80.0%
Chromosome Type Strat End Strand Name
tig0021410 gene 114192 115677 114192 ID=Msa1391260;Name=Msa1391260
tig0021410 mRNA 114192 115677 114192 ID=Msa1391260-mRNA-1;Parent=Msa1391260;Name=Msa1391260-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0021410 exon 115621 115677 115621 ID=Msa1391260-mRNA-1:exon:12562;Parent=Msa1391260-mRNA-1
tig0021410 exon 115428 115502 115428 ID=Msa1391260-mRNA-1:exon:12561;Parent=Msa1391260-mRNA-1
tig0021410 exon 115190 115268 115190 ID=Msa1391260-mRNA-1:exon:12560;Parent=Msa1391260-mRNA-1
tig0021410 exon 114858 115068 114858 ID=Msa1391260-mRNA-1:exon:12559;Parent=Msa1391260-mRNA-1
tig0021410 exon 114619 114763 114619 ID=Msa1391260-mRNA-1:exon:12558;Parent=Msa1391260-mRNA-1
tig0021410 exon 114192 114467 114192 ID=Msa1391260-mRNA-1:exon:12557;Parent=Msa1391260-mRNA-1
tig0021410 CDS 115621 115677 115621 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
tig0021410 CDS 115428 115502 115428 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
tig0021410 CDS 115190 115268 115190 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
tig0021410 CDS 114858 115068 114858 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
tig0021410 CDS 114619 114763 114619 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
tig0021410 CDS 114192 114467 114192 ID=Msa1391260-mRNA-1:cds;Parent=Msa1391260-mRNA-1
Gene Sequence

>Msa1391260

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1391260

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*