AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519070 MtrunA17_Chr3g0131571 95.597 159 6 1 52 209 1 159 2.85e-110 312
Msa0519070 MtrunA17_Chr5g0395851 50.000 60 24 2 106 161 181 238 8.07e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519070 AT5G51010.1 60.377 159 55 4 52 208 1 153 3.60e-60 186
Msa0519070 AT5G17170.1 41.584 101 33 5 106 201 180 259 2.03e-12 65.1

Find 68 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCAATTGCTTCATCTCTT+TGG 0.237136 3_4:-71021012 None:intergenic
AACATTCTTGTGCAAGCTAT+TGG 0.258906 3_4:-71021335 None:intergenic
AAAGAACATGAATGCATTAA+AGG 0.272507 3_4:-71021253 None:intergenic
GTTGATTAGGATGAAGTAAA+AGG 0.290725 3_4:-71020092 None:intergenic
AATCAACTACAAGTTTCTTA+TGG 0.292009 3_4:+71020108 Msa0519070:CDS
TGAGTCTGTAAGGGTGTAAT+TGG 0.306471 3_4:-71019845 None:intergenic
TAAGAAACTTGTAGTTGATT+AGG 0.306861 3_4:-71020105 None:intergenic
CCAGGGCAGAAGTATTTATC+AGG 0.317364 3_4:-71020318 None:intergenic
AAAGATGTCTTGAGAGTAGA+TGG 0.349045 3_4:-71020051 None:intergenic
TAGGATGAAGTAAAAGGTTA+AGG 0.356489 3_4:-71020086 None:intergenic
ACGACAGATATAAGCTTGTT+TGG 0.361476 3_4:-71020160 None:intergenic
ATTGAACAGATGGAACTAAA+AGG 0.366566 3_4:-71021310 None:intergenic
GTGGGAGTTGTAGTTCTTGC+AGG 0.375454 3_4:+71021158 Msa0519070:CDS
CTCCAAAGAGATGAAGCAAT+TGG 0.389726 3_4:+71021010 Msa0519070:CDS
ACTCCCACGGCAACTGCAAT+AGG 0.395621 3_4:-71021143 None:intergenic
TTGTGTGTTGTGGAAAGTTC+TGG 0.402170 3_4:-71019872 None:intergenic
TGAACAAAAGGCTTAAAGTA+TGG 0.404906 3_4:+71021439 Msa0519070:three_prime_UTR
ATCTTCGAAGATTCTTCCTC+TGG 0.407873 3_4:-71019932 None:intergenic
ATAGGGCTTAAACCTTCGTT+TGG 0.408207 3_4:-71020927 None:intergenic
AGCTACACGCATGGTAAACC+TGG 0.428236 3_4:-71020136 None:intergenic
TTTGTTGACATCTGTTGCAT+AGG 0.431914 3_4:-71020945 None:intergenic
GTTCAGTCATAGGTGGCAAC+TGG 0.435640 3_4:-71021421 None:intergenic
TTGTTGACATCTGTTGCATA+GGG 0.437509 3_4:-71020944 None:intergenic
CTTCCTCTGGCTATGAATTG+AGG 0.442929 3_4:-71019919 None:intergenic
AGATCAAAGAGAAATCAAAA+TGG 0.446891 3_4:+71019951 Msa0519070:CDS
TGTCTTGAGAGTAGATGGAT+TGG 0.449903 3_4:-71020046 None:intergenic
TTGGAGAGTGGTCGGAGGGT+AGG 0.455499 3_4:-71020027 None:intergenic
AGGATGAAGTAAAAGGTTAA+GGG 0.468286 3_4:-71020085 None:intergenic
TAGGGCTTAAACCTTCGTTT+GGG 0.473259 3_4:-71020926 None:intergenic
GCCACCTATGACTGAACAAA+AGG 0.477124 3_4:+71021427 Msa0519070:three_prime_UTR
TTATCAGGCAATTTATCAAA+GGG 0.481492 3_4:-71020303 None:intergenic
TTCTGGTGATTGAGTCTGTA+AGG 0.481972 3_4:-71019855 None:intergenic
GTGATAATCTTGTAGTGTGA+AGG 0.484953 3_4:-71019993 None:intergenic
TCCAAAGAGATGAAGCAATT+GGG 0.489224 3_4:+71021011 Msa0519070:CDS
TAGATGGATTGGAGAGTGGT+CGG 0.491971 3_4:-71020035 None:intergenic
TGATAATCTTGTAGTGTGAA+GGG 0.498122 3_4:-71019992 None:intergenic
CTTATATCTGTCGTGACTGC+GGG 0.498593 3_4:+71020169 Msa0519070:CDS
TTTATCAGGCAATTTATCAA+AGG 0.502560 3_4:-71020304 None:intergenic
GCTATTGGAAATTGAACAGA+TGG 0.508445 3_4:-71021320 None:intergenic
CAAAATGGCCTTGCAAGTGC+AGG 0.518248 3_4:+71019966 Msa0519070:CDS
AAATGAAACAGATGTTAGAA+AGG 0.526185 3_4:+71020973 Msa0519070:CDS
TGGATTGGAGAGTGGTCGGA+GGG 0.526512 3_4:-71020031 None:intergenic
CTATGAATTGAGGAAATGAA+TGG 0.528980 3_4:-71019909 None:intergenic
ACTTCCTATTGCAGTTGCCG+TGG 0.541016 3_4:+71021139 Msa0519070:CDS
CCTGATAAATACTTCTGCCC+TGG 0.541318 3_4:+71020318 Msa0519070:CDS
AAGTTTCTTATGGACCTCCC+AGG 0.547146 3_4:+71020118 Msa0519070:CDS
CTTCCTATTGCAGTTGCCGT+GGG 0.547663 3_4:+71021140 Msa0519070:CDS
GAGTGGTCGGAGGGTAGGAG+TGG 0.553144 3_4:-71020022 None:intergenic
ATCAGGCAATTTATCAAAGG+GGG 0.560795 3_4:-71020301 None:intergenic
AAGGGAGGCCTGCACTTGCA+AGG 0.564120 3_4:-71019974 None:intergenic
GCAGGTATATTTACAATGAG+AGG 0.564968 3_4:+71020277 Msa0519070:intron
GCTTATATCTGTCGTGACTG+CGG 0.577229 3_4:+71020168 Msa0519070:CDS
AAGAGAATAGTTGTGTGTTG+TGG 0.585949 3_4:-71019882 None:intergenic
CGGAGGGTAGGAGTGGCAGT+AGG 0.598226 3_4:-71020015 None:intergenic
ATGGATTGGAGAGTGGTCGG+AGG 0.602826 3_4:-71020032 None:intergenic
TTTCCTCAATTCATAGCCAG+AGG 0.625750 3_4:+71019916 Msa0519070:CDS
TTGTTTGGAAGCTACACGCA+TGG 0.631363 3_4:-71020145 None:intergenic
TTTGTGGTGCTCCCAAACGA+AGG 0.633347 3_4:+71020915 Msa0519070:CDS
TGCAAGAACTACAACTCCCA+CGG 0.635141 3_4:-71021156 None:intergenic
AGAGTAGATGGATTGGAGAG+TGG 0.641832 3_4:-71020039 None:intergenic
TGAATCCTACGTGGAAAGCG+TGG 0.643104 3_4:-71019820 None:intergenic
GGATGCCACGCTTTCCACGT+AGG 0.659184 3_4:+71019815 Msa0519070:exon
TATCAGGCAATTTATCAAAG+GGG 0.660862 3_4:-71020302 None:intergenic
TCTGGTGATTGAGTCTGTAA+GGG 0.670133 3_4:-71019854 None:intergenic
GCTACACGCATGGTAAACCT+GGG 0.677062 3_4:-71020135 None:intergenic
TAATCTTGTAGTGTGAAGGG+AGG 0.698956 3_4:-71019989 None:intergenic
ACACGCATGGTAAACCTGGG+AGG 0.732150 3_4:-71020132 None:intergenic
TAATTGGTTTGAATCCTACG+TGG 0.744336 3_4:-71019829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATATATCTTATTATT+TGG + chr3_4:71020235-71020254 Msa0519070:intron 10.0%
!! GAAATATATATCTTATTATT+TGG + chr3_4:71020235-71020254 Msa0519070:intron 10.0%
!! GAATTTGATAAATATTCATA+TGG - chr3_4:71020441-71020460 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG + chr3_4:71020445-71020464 Msa0519070:intron 15.0%
!! CATATCTATTATCTATATAT+AGG + chr3_4:71020577-71020596 Msa0519070:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG + chr3_4:71020810-71020829 Msa0519070:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG - chr3_4:71021089-71021108 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG - chr3_4:71021090-71021109 None:intergenic 15.0%
!! GAATTTGATAAATATTCATA+TGG - chr3_4:71020441-71020460 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG + chr3_4:71020445-71020464 Msa0519070:intron 15.0%
!! CATATCTATTATCTATATAT+AGG + chr3_4:71020577-71020596 Msa0519070:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG + chr3_4:71020810-71020829 Msa0519070:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG - chr3_4:71021089-71021108 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG - chr3_4:71021090-71021109 None:intergenic 15.0%
!! AAAAAGTAATGAAATTACCA+GGG - chr3_4:71020338-71020357 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG - chr3_4:71020339-71020358 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG + chr3_4:71020509-71020528 Msa0519070:intron 20.0%
!! TTATCTATATATAGGATGTA+TGG + chr3_4:71020585-71020604 Msa0519070:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG + chr3_4:71020778-71020797 Msa0519070:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG + chr3_4:71020847-71020866 Msa0519070:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG + chr3_4:71021264-71021283 Msa0519070:three_prime_UTR 20.0%
!!! CCCACTTTTTTTTTTATAAA+TGG - chr3_4:71019774-71019793 None:intergenic 20.0%
!! AAAAAGTAATGAAATTACCA+GGG - chr3_4:71020338-71020357 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG - chr3_4:71020339-71020358 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG + chr3_4:71020509-71020528 Msa0519070:intron 20.0%
!! TTATCTATATATAGGATGTA+TGG + chr3_4:71020585-71020604 Msa0519070:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG + chr3_4:71020778-71020797 Msa0519070:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG + chr3_4:71020847-71020866 Msa0519070:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG + chr3_4:71021264-71021283 Msa0519070:three_prime_UTR 20.0%
! AGATCAAAGAGAAATCAAAA+TGG + chr3_4:71019951-71019970 Msa0519070:CDS 25.0%
! TAAGAAACTTGTAGTTGATT+AGG - chr3_4:71020108-71020127 None:intergenic 25.0%
! AATCAACTACAAGTTTCTTA+TGG + chr3_4:71020108-71020127 Msa0519070:CDS 25.0%
! AAAAGAGAATGATCAAAGAA+AGG - chr3_4:71020201-71020220 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG + chr3_4:71020259-71020278 Msa0519070:intron 25.0%
! TTATCAGGCAATTTATCAAA+GGG - chr3_4:71020306-71020325 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG - chr3_4:71020307-71020326 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG - chr3_4:71020436-71020455 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG - chr3_4:71020723-71020742 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG - chr3_4:71020789-71020808 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG + chr3_4:71020819-71020838 Msa0519070:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG + chr3_4:71020848-71020867 Msa0519070:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG + chr3_4:71020973-71020992 Msa0519070:CDS 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG - chr3_4:71021085-71021104 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG + chr3_4:71021111-71021130 Msa0519070:intron 25.0%
! AAAGAACATGAATGCATTAA+AGG - chr3_4:71021256-71021275 None:intergenic 25.0%
! AGATCAAAGAGAAATCAAAA+TGG + chr3_4:71019951-71019970 Msa0519070:CDS 25.0%
! TAAGAAACTTGTAGTTGATT+AGG - chr3_4:71020108-71020127 None:intergenic 25.0%
! AATCAACTACAAGTTTCTTA+TGG + chr3_4:71020108-71020127 Msa0519070:CDS 25.0%
! AAAAGAGAATGATCAAAGAA+AGG - chr3_4:71020201-71020220 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG + chr3_4:71020259-71020278 Msa0519070:intron 25.0%
! TTATCAGGCAATTTATCAAA+GGG - chr3_4:71020306-71020325 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG - chr3_4:71020307-71020326 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG - chr3_4:71020436-71020455 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG - chr3_4:71020723-71020742 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG - chr3_4:71020789-71020808 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG + chr3_4:71020819-71020838 Msa0519070:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG + chr3_4:71020848-71020867 Msa0519070:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG + chr3_4:71020973-71020992 Msa0519070:CDS 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG - chr3_4:71021085-71021104 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG + chr3_4:71021111-71021130 Msa0519070:intron 25.0%
! AAAGAACATGAATGCATTAA+AGG - chr3_4:71021256-71021275 None:intergenic 25.0%
CTATGAATTGAGGAAATGAA+TGG - chr3_4:71019912-71019931 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG - chr3_4:71019995-71020014 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG - chr3_4:71020088-71020107 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG - chr3_4:71020089-71020108 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG - chr3_4:71020095-71020114 None:intergenic 30.0%
TATCAGGCAATTTATCAAAG+GGG - chr3_4:71020305-71020324 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG + chr3_4:71020554-71020573 Msa0519070:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG - chr3_4:71020677-71020696 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG - chr3_4:71020720-71020739 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG + chr3_4:71020882-71020901 Msa0519070:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG - chr3_4:71021045-71021064 None:intergenic 30.0%
ATTGAACAGATGGAACTAAA+AGG - chr3_4:71021313-71021332 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG + chr3_4:71021439-71021458 Msa0519070:three_prime_UTR 30.0%
CTATGAATTGAGGAAATGAA+TGG - chr3_4:71019912-71019931 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG - chr3_4:71019995-71020014 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG - chr3_4:71020088-71020107 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG - chr3_4:71020089-71020108 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG - chr3_4:71020095-71020114 None:intergenic 30.0%
TATCAGGCAATTTATCAAAG+GGG - chr3_4:71020305-71020324 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG + chr3_4:71020554-71020573 Msa0519070:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG - chr3_4:71020677-71020696 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG - chr3_4:71020720-71020739 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG + chr3_4:71020882-71020901 Msa0519070:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG - chr3_4:71021045-71021064 None:intergenic 30.0%
ATTGAACAGATGGAACTAAA+AGG - chr3_4:71021313-71021332 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG + chr3_4:71021439-71021458 Msa0519070:three_prime_UTR 30.0%
AAAAGTGGGAAAAAGTTGTG+TGG + chr3_4:71019785-71019804 Msa0519070:five_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG + chr3_4:71019786-71019805 Msa0519070:five_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG - chr3_4:71019832-71019851 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG - chr3_4:71019885-71019904 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG - chr3_4:71019996-71020015 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG - chr3_4:71020054-71020073 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG - chr3_4:71020163-71020182 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG + chr3_4:71020277-71020296 Msa0519070:intron 35.0%
ATCAGGCAATTTATCAAAGG+GGG - chr3_4:71020304-71020323 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG + chr3_4:71020368-71020387 Msa0519070:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG + chr3_4:71020621-71020640 Msa0519070:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG - chr3_4:71020674-71020693 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG - chr3_4:71020947-71020966 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG - chr3_4:71020948-71020967 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG + chr3_4:71021011-71021030 Msa0519070:CDS 35.0%
AGGAGTGAACATATTAAGCA+AGG - chr3_4:71021065-71021084 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG - chr3_4:71021323-71021342 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG - chr3_4:71021338-71021357 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG - chr3_4:71021434-71021453 None:intergenic 35.0%
AAAAGTGGGAAAAAGTTGTG+TGG + chr3_4:71019785-71019804 Msa0519070:five_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG + chr3_4:71019786-71019805 Msa0519070:five_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG - chr3_4:71019832-71019851 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG - chr3_4:71019885-71019904 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG - chr3_4:71019996-71020015 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG - chr3_4:71020054-71020073 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG - chr3_4:71020163-71020182 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG + chr3_4:71020277-71020296 Msa0519070:intron 35.0%
ATCAGGCAATTTATCAAAGG+GGG - chr3_4:71020304-71020323 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG + chr3_4:71020368-71020387 Msa0519070:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG + chr3_4:71020621-71020640 Msa0519070:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG - chr3_4:71020674-71020693 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG - chr3_4:71020947-71020966 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG - chr3_4:71020948-71020967 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG + chr3_4:71021011-71021030 Msa0519070:CDS 35.0%
AGGAGTGAACATATTAAGCA+AGG - chr3_4:71021065-71021084 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG - chr3_4:71021323-71021342 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG - chr3_4:71021338-71021357 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG - chr3_4:71021434-71021453 None:intergenic 35.0%
AAGTGGGAAAAAGTTGTGTG+GGG + chr3_4:71019787-71019806 Msa0519070:five_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG + chr3_4:71019794-71019813 Msa0519070:five_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG - chr3_4:71019848-71019867 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG - chr3_4:71019857-71019876 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG - chr3_4:71019858-71019877 None:intergenic 40.0%
TTGTGTGTTGTGGAAAGTTC+TGG - chr3_4:71019875-71019894 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG + chr3_4:71019916-71019935 Msa0519070:CDS 40.0%
ATCTTCGAAGATTCTTCCTC+TGG - chr3_4:71019935-71019954 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG - chr3_4:71019992-71020011 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG - chr3_4:71020049-71020068 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG - chr3_4:71020374-71020393 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG + chr3_4:71020371-71020390 Msa0519070:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG + chr3_4:71020604-71020623 Msa0519070:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG + chr3_4:71020641-71020660 Msa0519070:intron 40.0%
TGAATTTGACAGAATCACGG+TGG + chr3_4:71020644-71020663 Msa0519070:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG + chr3_4:71020899-71020918 Msa0519070:intron 40.0%
TAGGGCTTAAACCTTCGTTT+GGG - chr3_4:71020929-71020948 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG - chr3_4:71020930-71020949 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG + chr3_4:71021010-71021029 Msa0519070:CDS 40.0%
ACCCAATTGCTTCATCTCTT+TGG - chr3_4:71021015-71021034 None:intergenic 40.0%
AAGTGGGAAAAAGTTGTGTG+GGG + chr3_4:71019787-71019806 Msa0519070:five_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG + chr3_4:71019794-71019813 Msa0519070:five_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG - chr3_4:71019848-71019867 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG - chr3_4:71019857-71019876 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG - chr3_4:71019858-71019877 None:intergenic 40.0%
TTGTGTGTTGTGGAAAGTTC+TGG - chr3_4:71019875-71019894 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG + chr3_4:71019916-71019935 Msa0519070:CDS 40.0%
ATCTTCGAAGATTCTTCCTC+TGG - chr3_4:71019935-71019954 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG - chr3_4:71019992-71020011 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG - chr3_4:71020049-71020068 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG - chr3_4:71020374-71020393 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG + chr3_4:71020371-71020390 Msa0519070:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG + chr3_4:71020604-71020623 Msa0519070:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG + chr3_4:71020641-71020660 Msa0519070:intron 40.0%
TGAATTTGACAGAATCACGG+TGG + chr3_4:71020644-71020663 Msa0519070:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG + chr3_4:71020899-71020918 Msa0519070:intron 40.0%
TAGGGCTTAAACCTTCGTTT+GGG - chr3_4:71020929-71020948 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG - chr3_4:71020930-71020949 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG + chr3_4:71021010-71021029 Msa0519070:CDS 40.0%
ACCCAATTGCTTCATCTCTT+TGG - chr3_4:71021015-71021034 None:intergenic 40.0%
CTTCCTCTGGCTATGAATTG+AGG - chr3_4:71019922-71019941 None:intergenic 45.0%
!! TAGATGGATTGGAGAGTGGT+CGG - chr3_4:71020038-71020057 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+TGG - chr3_4:71020042-71020061 None:intergenic 45.0%
AAGTTTCTTATGGACCTCCC+AGG + chr3_4:71020118-71020137 Msa0519070:CDS 45.0%
TTGTTTGGAAGCTACACGCA+TGG - chr3_4:71020148-71020167 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG + chr3_4:71020168-71020187 Msa0519070:CDS 45.0%
CTTATATCTGTCGTGACTGC+GGG + chr3_4:71020169-71020188 Msa0519070:CDS 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG - chr3_4:71020321-71020340 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG + chr3_4:71020318-71020337 Msa0519070:CDS 45.0%
ATGAGACCAGTCTTTGTGAG+TGG - chr3_4:71020755-71020774 None:intergenic 45.0%
TGCAAGAACTACAACTCCCA+CGG - chr3_4:71021159-71021178 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG + chr3_4:71021427-71021446 Msa0519070:three_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG - chr3_4:71021431-71021450 None:intergenic 45.0%
CTTCCTCTGGCTATGAATTG+AGG - chr3_4:71019922-71019941 None:intergenic 45.0%
!! TAGATGGATTGGAGAGTGGT+CGG - chr3_4:71020038-71020057 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+TGG - chr3_4:71020042-71020061 None:intergenic 45.0%
AAGTTTCTTATGGACCTCCC+AGG + chr3_4:71020118-71020137 Msa0519070:CDS 45.0%
TTGTTTGGAAGCTACACGCA+TGG - chr3_4:71020148-71020167 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG + chr3_4:71020168-71020187 Msa0519070:CDS 45.0%
CTTATATCTGTCGTGACTGC+GGG + chr3_4:71020169-71020188 Msa0519070:CDS 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG - chr3_4:71020321-71020340 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG + chr3_4:71020318-71020337 Msa0519070:CDS 45.0%
ATGAGACCAGTCTTTGTGAG+TGG - chr3_4:71020755-71020774 None:intergenic 45.0%
TGCAAGAACTACAACTCCCA+CGG - chr3_4:71021159-71021178 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG + chr3_4:71021427-71021446 Msa0519070:three_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG - chr3_4:71021431-71021450 None:intergenic 45.0%
TGAATCCTACGTGGAAAGCG+TGG - chr3_4:71019823-71019842 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG + chr3_4:71019966-71019985 Msa0519070:CDS 50.0%
GCTACACGCATGGTAAACCT+GGG - chr3_4:71020138-71020157 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG - chr3_4:71020139-71020158 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG + chr3_4:71020660-71020679 Msa0519070:intron 50.0%
TCACTGCCACTCACAAAGAC+TGG + chr3_4:71020746-71020765 Msa0519070:intron 50.0%
TTTGTGGTGCTCCCAAACGA+AGG + chr3_4:71020915-71020934 Msa0519070:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG + chr3_4:71021139-71021158 Msa0519070:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG + chr3_4:71021140-71021159 Msa0519070:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG + chr3_4:71021158-71021177 Msa0519070:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG - chr3_4:71021424-71021443 None:intergenic 50.0%
TGAATCCTACGTGGAAAGCG+TGG - chr3_4:71019823-71019842 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG + chr3_4:71019966-71019985 Msa0519070:CDS 50.0%
GCTACACGCATGGTAAACCT+GGG - chr3_4:71020138-71020157 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG - chr3_4:71020139-71020158 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG + chr3_4:71020660-71020679 Msa0519070:intron 50.0%
TCACTGCCACTCACAAAGAC+TGG + chr3_4:71020746-71020765 Msa0519070:intron 50.0%
TTTGTGGTGCTCCCAAACGA+AGG + chr3_4:71020915-71020934 Msa0519070:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG + chr3_4:71021139-71021158 Msa0519070:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG + chr3_4:71021140-71021159 Msa0519070:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG + chr3_4:71021158-71021177 Msa0519070:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG - chr3_4:71021424-71021443 None:intergenic 50.0%
! TGGATTGGAGAGTGGTCGGA+GGG - chr3_4:71020034-71020053 None:intergenic 55.0%
!! ATGGATTGGAGAGTGGTCGG+AGG - chr3_4:71020035-71020054 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG - chr3_4:71020135-71020154 None:intergenic 55.0%
ACTCCCACGGCAACTGCAAT+AGG - chr3_4:71021146-71021165 None:intergenic 55.0%
! TGGATTGGAGAGTGGTCGGA+GGG - chr3_4:71020034-71020053 None:intergenic 55.0%
!! ATGGATTGGAGAGTGGTCGG+AGG - chr3_4:71020035-71020054 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG - chr3_4:71020135-71020154 None:intergenic 55.0%
ACTCCCACGGCAACTGCAAT+AGG - chr3_4:71021146-71021165 None:intergenic 55.0%
GGATGCCACGCTTTCCACGT+AGG + chr3_4:71019815-71019834 Msa0519070:exon 60.0%
AAGGGAGGCCTGCACTTGCA+AGG - chr3_4:71019977-71019996 None:intergenic 60.0%
TTGGAGAGTGGTCGGAGGGT+AGG - chr3_4:71020030-71020049 None:intergenic 60.0%
GGATGCCACGCTTTCCACGT+AGG + chr3_4:71019815-71019834 Msa0519070:exon 60.0%
AAGGGAGGCCTGCACTTGCA+AGG - chr3_4:71019977-71019996 None:intergenic 60.0%
TTGGAGAGTGGTCGGAGGGT+AGG - chr3_4:71020030-71020049 None:intergenic 60.0%
CGGAGGGTAGGAGTGGCAGT+AGG - chr3_4:71020018-71020037 None:intergenic 65.0%
GAGTGGTCGGAGGGTAGGAG+TGG - chr3_4:71020025-71020044 None:intergenic 65.0%
CGGAGGGTAGGAGTGGCAGT+AGG - chr3_4:71020018-71020037 None:intergenic 65.0%
GAGTGGTCGGAGGGTAGGAG+TGG - chr3_4:71020025-71020044 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 71019772 71021466 71019772 ID=Msa0519070;Name=Msa0519070
chr3_4 mRNA 71019772 71021466 71019772 ID=Msa0519070-mRNA-1;Parent=Msa0519070;Name=Msa0519070-mRNA-1;_AED=0.16;_eAED=0.16;_QI=45|1|1|1|1|1|4|255|209
chr3_4 exon 71019772 71020190 71019772 ID=Msa0519070-mRNA-1:exon:19455;Parent=Msa0519070-mRNA-1
chr3_4 exon 71020281 71020339 71020281 ID=Msa0519070-mRNA-1:exon:19456;Parent=Msa0519070-mRNA-1
chr3_4 exon 71020915 71021032 71020915 ID=Msa0519070-mRNA-1:exon:19457;Parent=Msa0519070-mRNA-1
chr3_4 exon 71021133 71021466 71021133 ID=Msa0519070-mRNA-1:exon:19458;Parent=Msa0519070-mRNA-1
chr3_4 five_prime_UTR 71019772 71019816 71019772 ID=Msa0519070-mRNA-1:five_prime_utr;Parent=Msa0519070-mRNA-1
chr3_4 CDS 71019817 71020190 71019817 ID=Msa0519070-mRNA-1:cds;Parent=Msa0519070-mRNA-1
chr3_4 CDS 71020281 71020339 71020281 ID=Msa0519070-mRNA-1:cds;Parent=Msa0519070-mRNA-1
chr3_4 CDS 71020915 71021032 71020915 ID=Msa0519070-mRNA-1:cds;Parent=Msa0519070-mRNA-1
chr3_4 CDS 71021133 71021211 71021133 ID=Msa0519070-mRNA-1:cds;Parent=Msa0519070-mRNA-1
chr3_4 three_prime_UTR 71021212 71021466 71021212 ID=Msa0519070-mRNA-1:three_prime_utr;Parent=Msa0519070-mRNA-1
Gene Sequence

>Msa0519070

ATGCCACGCTTTCCACGTAGGATTCAAACCAATTACACCCTTACAGACTCAATCACCAGAACTTTCCACAACACACAACTATTCTCTTATCTCCATTCATTTCCTCAATTCATAGCCAGAGGAAGAATCTTCGAAGATCAAAGAGAAATCAAAATGGCCTTGCAAGTGCAGGCCTCCCTTCACACTACAAGATTATCACCTACTGCCACTCCTACCCTCCGACCACTCTCCAATCCATCTACTCTCAAGACATCTTTCTTCTCTCGTTCCCTTAACCTTTTACTTCATCCTAATCAACTACAAGTTTCTTATGGACCTCCCAGGTTTACCATGCGTGTAGCTTCCAAACAAGCTTATATCTGTCGTGACTGCGGGTATATTTACAATGAGAGGACCCCCTTTGATAAATTGCCTGATAAATACTTCTGCCCTGTTTGTGGTGCTCCCAAACGAAGGTTTAAGCCCTATGCAACAGATGTCAACAAAAAAGCAAATGAAACAGATGTTAGAAAGGCAAGAAAAGCTGAACTCCAAAGAGATGAAGCAATTGGGAAAGCACTTCCTATTGCAGTTGCCGTGGGAGTTGTAGTTCTTGCAGGATTATACTTCTATCTCAACAACACATTTTAG

Protein sequence

>Msa0519070

MPRFPRRIQTNYTLTDSITRTFHNTQLFSYLHSFPQFIARGRIFEDQREIKMALQVQASLHTTRLSPTATPTLRPLSNPSTLKTSFFSRSLNLLLHPNQLQVSYGPPRFTMRVASKQAYICRDCGYIYNERTPFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDVRKARKAELQRDEAIGKALPIAVAVGVVVLAGLYFYLNNTF*