AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973010 MtrunA17_Chr6g0451601 90.291 103 1 1 1 94 42 144 9.58e-66 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973010 AT2G04700.3 80.583 103 11 1 1 94 44 146 4.66e-59 177
Msa0973010 AT2G04700.1 80.583 103 11 1 1 94 44 146 4.66e-59 177
Msa0973010 AT2G04700.2 63.529 85 20 1 21 94 6 90 5.57e-34 112

Find 48 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGGCTGCACAAGGATTT+TGG 0.145270 6_4:-5331350 Msa0973010:CDS
TATGGGTTAGGCCATTTATA+AGG 0.223780 6_4:+5330379 None:intergenic
GAAAGCACAACAACAGAATT+TGG 0.229704 6_4:+5333586 None:intergenic
TCAGAAGAGTACTAGGTTAA+TGG 0.261179 6_4:+5333695 None:intergenic
GTGCACCCAACGAATCTTTA+TGG 0.263572 6_4:+5331738 None:intergenic
TCATCTGTGCCCCTTATAAA+TGG 0.277222 6_4:-5330390 Msa0973010:three_prime_UTR
TTTCATATCTTTATTGATAT+CGG 0.284959 6_4:-5330297 Msa0973010:three_prime_UTR
AAAAGAATGTTCCTGATTTA+CGG 0.288914 6_4:+5333450 None:intergenic
GATCTGTGACAAAGTAAGTA+TGG 0.291489 6_4:+5330361 None:intergenic
TGTTGTTGTGCTTTCAATTT+CGG 0.341397 6_4:-5333578 Msa0973010:five_prime_UTR
ATGGGTTAGGCCATTTATAA+GGG 0.373188 6_4:+5330380 None:intergenic
TCGCCGGCAAAATCGTTATC+AGG 0.384591 6_4:+5330709 None:intergenic
CAGAAGAGTACTAGGTTAAT+GGG 0.396556 6_4:+5333696 None:intergenic
GAGCAATATGCCCGTAAATC+AGG 0.400997 6_4:-5333461 Msa0973010:CDS
TACTCTTCTGAGGATGTAAC+TGG 0.405727 6_4:-5333683 Msa0973010:five_prime_UTR
AAAGAATGTTCCTGATTTAC+GGG 0.415753 6_4:+5333451 None:intergenic
TGCCTTGCAGACTATCACCT+TGG 0.428260 6_4:-5330563 Msa0973010:intron
TGGTGCTTAACCAATGCTCC+GGG 0.465259 6_4:-5333843 Msa0973010:five_prime_UTR
ATAAATCAGTTGAAATTATG+AGG 0.465770 6_4:-5333493 Msa0973010:exon
TTGGTGCTTAACCAATGCTC+CGG 0.472153 6_4:-5333844 Msa0973010:five_prime_UTR
TGACAAAGTAAGTATGGGTT+AGG 0.474066 6_4:+5330367 None:intergenic
TGAACTTTCTAAATATATAC+CGG 0.475605 6_4:-5333750 Msa0973010:five_prime_UTR
CTCTCTCTCATGGGAACACA+CGG 0.481015 6_4:+5331321 None:intergenic
CAGTGAATCACTGGCTAGAC+CGG 0.486557 6_4:+5333731 None:intergenic
AAATGAAAGTTATGAAATGA+AGG 0.495288 6_4:+5330337 None:intergenic
ATGTGCCTACCTCTCTCTCA+TGG 0.500306 6_4:+5331311 None:intergenic
GTACTAGGTTAATGGGTCAT+TGG 0.505354 6_4:+5333703 None:intergenic
AGTAACTGCTGTTGTTATCA+AGG 0.507865 6_4:-5333414 Msa0973010:intron
TTTCTATAGAAATAATGTGC+TGG 0.514454 6_4:-5333537 Msa0973010:five_prime_UTR
TGATTCTTTAATTTCATCCA+AGG 0.519163 6_4:+5330546 None:intergenic
CAGAATTACCTGTTCATCGC+CGG 0.521484 6_4:+5330693 None:intergenic
ATTTCAACTGATTTATCAGA+CGG 0.530268 6_4:+5333500 None:intergenic
TACATCCTCAGAAGAGTACT+AGG 0.535971 6_4:+5333688 None:intergenic
TAATGTGCTGGTTCTTTCAG+TGG 0.536873 6_4:-5333525 Msa0973010:five_prime_UTR
TTGGTCGATCAGTGAATCAC+TGG 0.537277 6_4:+5333722 None:intergenic
TTCAACATATATAACATTGG+TGG 0.552458 6_4:-5333660 Msa0973010:five_prime_UTR
ATCTGTGACAAAGTAAGTAT+GGG 0.563741 6_4:+5330362 None:intergenic
TGTGCCTACCTCTCTCTCAT+GGG 0.575835 6_4:+5331312 None:intergenic
GTGCTTAACCAATGCTCCGG+GGG 0.598699 6_4:-5333841 Msa0973010:five_prime_UTR
CGTGTGTTCCCATGAGAGAG+AGG 0.615907 6_4:-5331320 Msa0973010:intron
TTATGACGATAAAGCTGCTG+AGG 0.616351 6_4:-5331367 Msa0973010:CDS
TGGGTTAGGCCATTTATAAG+GGG 0.622811 6_4:+5330381 None:intergenic
TGGTTCAACATATATAACAT+TGG 0.628462 6_4:-5333663 Msa0973010:five_prime_UTR
AGAATGTTAAACAGTGCCCC+CGG 0.628467 6_4:+5333825 None:intergenic
AAAGCTGCTGAGGCTGCACA+AGG 0.634290 6_4:-5331357 Msa0973010:CDS
GGTGCTTAACCAATGCTCCG+GGG 0.647389 6_4:-5333842 Msa0973010:five_prime_UTR
ATTAACCTAGTACTCTTCTG+AGG 0.664463 6_4:-5333693 Msa0973010:five_prime_UTR
TCTCTCTCATGGGAACACAC+GGG 0.712722 6_4:+5331322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTTGTTTTTG+TGG - chr6_4:5330977-5330996 Msa0973010:intron 10.0%
!!! ATGTATTGATTTTATTAAAA+TGG - chr6_4:5333061-5333080 Msa0973010:intron 10.0%
!! ATGAAACTACAATTTATATT+TGG + chr6_4:5330783-5330802 None:intergenic 15.0%
!!! TTTTGTTTCATTTTCATAAA+CGG - chr6_4:5330917-5330936 Msa0973010:intron 15.0%
!! TTTGAAAATGTATTTATTAG+TGG - chr6_4:5331378-5331397 Msa0973010:intron 15.0%
!! TAAAATTTCATTAGATTACA+TGG - chr6_4:5332033-5332052 Msa0973010:intron 15.0%
!!! ATTTCATAACTTTCATTTTT+TGG - chr6_4:5333795-5333814 Msa0973010:five_prime_UTR 15.0%
!! TTTCATATCTTTATTGATAT+CGG - chr6_4:5333830-5333849 Msa0973010:five_prime_UTR 15.0%
!! TGAACTTTCTAAATATATAC+CGG - chr6_4:5330377-5330396 Msa0973010:three_prime_UTR 20.0%
!! ATAAATCAGTTGAAATTATG+AGG - chr6_4:5330634-5330653 Msa0973010:intron 20.0%
!!! TCGAACCTAATTTAAATTTT+TGG - chr6_4:5331585-5331604 Msa0973010:intron 20.0%
!! CCATTCCAAAAATTTAAATT+AGG + chr6_4:5331593-5331612 None:intergenic 20.0%
!!! CCTAATTTAAATTTTTGGAA+TGG - chr6_4:5331590-5331609 Msa0973010:intron 20.0%
!!! TAAATTTTTGGAATGGATAA+TGG - chr6_4:5331597-5331616 Msa0973010:intron 20.0%
!! TAGAACACTATACTAATTTA+TGG - chr6_4:5331671-5331690 Msa0973010:intron 20.0%
!! AGAACACTATACTAATTTAT+GGG - chr6_4:5331672-5331691 Msa0973010:intron 20.0%
!! ATCATAACAAAATTTACACA+GGG + chr6_4:5331936-5331955 None:intergenic 20.0%
!!! ATTTTGTGTCTTTATTCTAT+AGG - chr6_4:5332647-5332666 Msa0973010:intron 20.0%
!!! TTAAACAAACTGATATTTTC+TGG - chr6_4:5333004-5333023 Msa0973010:intron 20.0%
!!! TAAACAAACTGATATTTTCT+GGG - chr6_4:5333005-5333024 Msa0973010:intron 20.0%
!! TGAATTATAAAATACGATCA+TGG + chr6_4:5333145-5333164 None:intergenic 20.0%
!!! TAATTCATACTTTTGTTATC+AGG - chr6_4:5333158-5333177 Msa0973010:intron 20.0%
!!! AATTCATACTTTTGTTATCA+GGG - chr6_4:5333159-5333178 Msa0973010:intron 20.0%
!! TTAGTTTATATCTTGGTAAA+AGG - chr6_4:5333202-5333221 Msa0973010:intron 20.0%
!! AAATGAAAGTTATGAAATGA+AGG + chr6_4:5333793-5333812 None:intergenic 20.0%
! TGGTTCAACATATATAACAT+TGG - chr6_4:5330464-5330483 Msa0973010:three_prime_UTR 25.0%
! TTCAACATATATAACATTGG+TGG - chr6_4:5330467-5330486 Msa0973010:three_prime_UTR 25.0%
! TTTCTATAGAAATAATGTGC+TGG - chr6_4:5330590-5330609 Msa0973010:intron 25.0%
!! ATTTCAACTGATTTATCAGA+CGG + chr6_4:5330630-5330649 None:intergenic 25.0%
! AAAAGAATGTTCCTGATTTA+CGG + chr6_4:5330680-5330699 None:intergenic 25.0%
! ATTGAATTCAAAGTTGAGAA+AGG + chr6_4:5331127-5331146 None:intergenic 25.0%
! TTCAAACCATATCTGATTAA+AGG + chr6_4:5331364-5331383 None:intergenic 25.0%
! GAAAATGTATTTATTAGTGG+TGG - chr6_4:5331381-5331400 Msa0973010:intron 25.0%
! AATTCGTTGCATTTATACTT+CGG + chr6_4:5331471-5331490 None:intergenic 25.0%
!!! AATCTTCCTAAAAGTACTTT+GGG + chr6_4:5331741-5331760 None:intergenic 25.0%
!!! AAATCTTCCTAAAAGTACTT+TGG + chr6_4:5331742-5331761 None:intergenic 25.0%
!! AACGTTTCTGTTTTATATAC+AGG - chr6_4:5331773-5331792 Msa0973010:intron 25.0%
! ATCAAAACAAAATTCACACA+GGG + chr6_4:5331883-5331902 None:intergenic 25.0%
! GATCATAACAAAATTTACAC+AGG + chr6_4:5331937-5331956 None:intergenic 25.0%
!! TATTTTACGTTAAGAAACAG+AGG + chr6_4:5331959-5331978 None:intergenic 25.0%
!! CAGAAAATTTTCCTATACAT+CGG - chr6_4:5332133-5332152 Msa0973010:intron 25.0%
! AAAAGCAAATATGGAAATGA+AGG - chr6_4:5332156-5332175 Msa0973010:intron 25.0%
! AAAGCAAATATGGAAATGAA+GGG - chr6_4:5332157-5332176 Msa0973010:intron 25.0%
! CTGATAACAGATATTTACTT+TGG - chr6_4:5332313-5332332 Msa0973010:intron 25.0%
!!! TATTGTTTCTACTTTGAAAC+AGG - chr6_4:5332356-5332375 Msa0973010:intron 25.0%
!!! ATTGTTTCTACTTTGAAACA+GGG - chr6_4:5332357-5332376 Msa0973010:intron 25.0%
!!! GTAAAACAAGAAGTATTTAC+CGG + chr6_4:5332428-5332447 None:intergenic 25.0%
! TATTTAATAACACTGCAACA+AGG + chr6_4:5332450-5332469 None:intergenic 25.0%
!! TGTTTAAATTTTACTCTGCT+TGG + chr6_4:5332991-5333010 None:intergenic 25.0%
! GACTTTCTTAGTTTATATCT+TGG - chr6_4:5333195-5333214 Msa0973010:intron 25.0%
!! ATGTTATTTGTCAAGAAATG+TGG - chr6_4:5333247-5333266 Msa0973010:intron 25.0%
! TTAAGAAAACAATATTCTGG+AGG + chr6_4:5333344-5333363 None:intergenic 25.0%
! GAGTTAAGAAAACAATATTC+TGG + chr6_4:5333347-5333366 None:intergenic 25.0%
!! ATTGTTTTCTTAACTCATTG+TGG - chr6_4:5333351-5333370 Msa0973010:intron 25.0%
!!! ATCAAAATATGTTGTTTCGT+TGG + chr6_4:5333498-5333517 None:intergenic 25.0%
!!! CGAAACAACATATTTTGATT+TGG - chr6_4:5333499-5333518 Msa0973010:five_prime_UTR 25.0%
!! TGATTCTTTAATTTCATCCA+AGG + chr6_4:5333584-5333603 None:intergenic 25.0%
!!! ACTGTATCTTTTGAAAAACA+AGG - chr6_4:5333661-5333680 Msa0973010:five_prime_UTR 25.0%
!!! CTGTATCTTTTGAAAAACAA+GGG - chr6_4:5333662-5333681 Msa0973010:five_prime_UTR 25.0%
!!! GTTTGAATGTTAGTTTTCTG+TGG - chr6_4:5330518-5330537 Msa0973010:exon 30.0%
TGTTGTTGTGCTTTCAATTT+CGG - chr6_4:5330549-5330568 Msa0973010:CDS 30.0%
AAAGAATGTTCCTGATTTAC+GGG + chr6_4:5330679-5330698 None:intergenic 30.0%
ACATTTGCATCAACAACTAA+AGG + chr6_4:5330809-5330828 None:intergenic 30.0%
AATGTTGTTGAATCAAGTCT+CGG - chr6_4:5330824-5330843 Msa0973010:intron 30.0%
! CTCAAAAAACAAGTTGAGAA+AGG + chr6_4:5331167-5331186 None:intergenic 30.0%
!!! TTGTTTTTTGAGCTCTGTAT+TGG - chr6_4:5331175-5331194 Msa0973010:intron 30.0%
!! TGCTGATATATGTTTCTAGT+TGG - chr6_4:5331218-5331237 Msa0973010:intron 30.0%
!! GCTGATATATGTTTCTAGTT+GGG - chr6_4:5331219-5331238 Msa0973010:intron 30.0%
!!! ATGTTTCTAGTTGGGTTTTT+AGG - chr6_4:5331227-5331246 Msa0973010:intron 30.0%
! ACCTAGAAGTTTTACGTTAT+GGG - chr6_4:5331269-5331288 Msa0973010:intron 30.0%
AACCATATCTGATTAAAGGT+GGG + chr6_4:5331360-5331379 None:intergenic 30.0%
AAACCATATCTGATTAAAGG+TGG + chr6_4:5331361-5331380 None:intergenic 30.0%
!! ACTTCGGCACTTTAAAATTT+GGG + chr6_4:5331455-5331474 None:intergenic 30.0%
!! TACTTCGGCACTTTAAAATT+TGG + chr6_4:5331456-5331475 None:intergenic 30.0%
TAAATGCAACGAATTTGAAG+TGG - chr6_4:5331476-5331495 Msa0973010:intron 30.0%
!! GTAATACCCAAAGTACTTTT+AGG - chr6_4:5331732-5331751 Msa0973010:intron 30.0%
TAAAACAGAAACGTTGTGTT+TGG + chr6_4:5331768-5331787 None:intergenic 30.0%
ATTCAAAAATCATCTTCCCA+TGG - chr6_4:5331823-5331842 Msa0973010:intron 30.0%
GTTCAAAAAACAAGTACCAT+GGG + chr6_4:5331842-5331861 None:intergenic 30.0%
TGTTCAAAAAACAAGTACCA+TGG + chr6_4:5331843-5331862 None:intergenic 30.0%
GATCAAAACAAAATTCACAC+AGG + chr6_4:5331884-5331903 None:intergenic 30.0%
AAAACCAGAAGATCAAAACA+GGG + chr6_4:5331907-5331926 None:intergenic 30.0%
TAAAACCAGAAGATCAAAAC+AGG + chr6_4:5331908-5331927 None:intergenic 30.0%
! CAATTAGGAGCATATAAAAG+TGG + chr6_4:5331982-5332001 None:intergenic 30.0%
ACATGATCAATTGTGCAATT+AGG + chr6_4:5331997-5332016 None:intergenic 30.0%
TTCTCAGTTATGCAAATTCT+GGG + chr6_4:5332106-5332125 None:intergenic 30.0%
TTTCTCAGTTATGCAAATTC+TGG + chr6_4:5332107-5332126 None:intergenic 30.0%
!! TATTTGCTTTTCCGATGTAT+AGG + chr6_4:5332147-5332166 None:intergenic 30.0%
ATACATCGGAAAAGCAAATA+TGG - chr6_4:5332147-5332166 Msa0973010:intron 30.0%
! AAGTTCGAAAATGAGTTTTC+CGG - chr6_4:5332228-5332247 Msa0973010:intron 30.0%
AAAATTATGCTACGCTATAG+TGG + chr6_4:5332493-5332512 None:intergenic 30.0%
TTGTACTAAATAGCATATCG+CGG + chr6_4:5332533-5332552 None:intergenic 30.0%
AGTACAAAATGTTGTGCAAT+AGG - chr6_4:5332546-5332565 Msa0973010:intron 30.0%
ACAAAATTGTCTTTGCAACA+AGG + chr6_4:5332634-5332653 None:intergenic 30.0%
TGTCTTTATTCTATAGGTTC+TGG - chr6_4:5332653-5332672 Msa0973010:intron 30.0%
! ATCCAAAATCACTGTGTTTT+AGG - chr6_4:5332735-5332754 Msa0973010:intron 30.0%
TGATAAATTAAGGTCTGAGA+AGG + chr6_4:5332868-5332887 None:intergenic 30.0%
GCTTCGAACATGATAAATTA+AGG + chr6_4:5332878-5332897 None:intergenic 30.0%
! AATATCAGTGTCATTAATCG+CGG + chr6_4:5333033-5333052 None:intergenic 30.0%
! GTTTGATACAGTTGTTTCAT+AGG + chr6_4:5333109-5333128 None:intergenic 30.0%
ATAAACTAAGAAAGTCACTC+AGG + chr6_4:5333191-5333210 None:intergenic 30.0%
GTTTATATCTTGGTAAAAGG+CGG - chr6_4:5333205-5333224 Msa0973010:intron 30.0%
!!! TGTGGTTTTGTTTGATAGAA+AGG - chr6_4:5333369-5333388 Msa0973010:intron 30.0%
ATCTGTGACAAAGTAAGTAT+GGG + chr6_4:5333768-5333787 None:intergenic 30.0%
!! CAGAAGAGTACTAGGTTAAT+GGG + chr6_4:5330434-5330453 None:intergenic 35.0%
!! TCAGAAGAGTACTAGGTTAA+TGG + chr6_4:5330435-5330454 None:intergenic 35.0%
ATTAACCTAGTACTCTTCTG+AGG - chr6_4:5330434-5330453 Msa0973010:three_prime_UTR 35.0%
! GAAAGCACAACAACAGAATT+TGG + chr6_4:5330544-5330563 None:intergenic 35.0%
!! ACATTCTTTTGTGCTGACAA+AGG - chr6_4:5330690-5330709 Msa0973010:intron 35.0%
AGTAACTGCTGTTGTTATCA+AGG - chr6_4:5330713-5330732 Msa0973010:CDS 35.0%
! ATTTTGTTGAACGTGAGTCA+TGG - chr6_4:5330871-5330890 Msa0973010:intron 35.0%
! TTTTGTTGAACGTGAGTCAT+GGG - chr6_4:5330872-5330891 Msa0973010:intron 35.0%
CATGGGAGATTCATTATTGT+TGG - chr6_4:5330889-5330908 Msa0973010:intron 35.0%
AAAGTTGAGAAAGGACAATC+TGG + chr6_4:5331118-5331137 None:intergenic 35.0%
!! CTGTATTGGTTTCAGATGTT+AGG - chr6_4:5331189-5331208 Msa0973010:intron 35.0%
! GACCTAGAAGTTTTACGTTA+TGG - chr6_4:5331268-5331287 Msa0973010:intron 35.0%
! CCTAGAAGTTTTACGTTATG+GGG - chr6_4:5331270-5331289 Msa0973010:intron 35.0%
! CTAGAAGTTTTACGTTATGG+GGG - chr6_4:5331271-5331290 Msa0973010:intron 35.0%
!! GGCACTTTAAAATTTGGGTA+GGG + chr6_4:5331450-5331469 None:intergenic 35.0%
ATCCTGTAATACATTGACGA+TGG - chr6_4:5331562-5331581 Msa0973010:intron 35.0%
AAACCAGAAGATCAAAACAG+GGG + chr6_4:5331906-5331925 None:intergenic 35.0%
! TGGTTTGAAATGCTGAATGT+TGG - chr6_4:5332053-5332072 Msa0973010:intron 35.0%
TCATCCCAGCATATCAAAAT+CGG + chr6_4:5332199-5332218 None:intergenic 35.0%
!! TTCTACTTTGAAACAGGGTT+TGG - chr6_4:5332362-5332381 Msa0973010:intron 35.0%
TTTGGATAGCAGAAAATAGC+AGG + chr6_4:5332598-5332617 None:intergenic 35.0%
! CAAGGCAGTGTTATCAATTT+TGG + chr6_4:5332616-5332635 None:intergenic 35.0%
TGGCAATGTGGTTGTATATT+AGG - chr6_4:5332673-5332692 Msa0973010:intron 35.0%
! GTGATTTTGGATGTAAGCTT+AGG + chr6_4:5332727-5332746 None:intergenic 35.0%
! TGCCTAAAACACAGTGATTT+TGG + chr6_4:5332740-5332759 None:intergenic 35.0%
GAAACAACTGTATCAAACAG+AGG - chr6_4:5333111-5333130 Msa0973010:intron 35.0%
TGAAAAACAAGGGAAGAGAA+AGG - chr6_4:5333672-5333691 Msa0973010:five_prime_UTR 35.0%
!! ATGGGTTAGGCCATTTATAA+GGG + chr6_4:5333750-5333769 None:intergenic 35.0%
!! TATGGGTTAGGCCATTTATA+AGG + chr6_4:5333751-5333770 None:intergenic 35.0%
TGACAAAGTAAGTATGGGTT+AGG + chr6_4:5333763-5333782 None:intergenic 35.0%
GATCTGTGACAAAGTAAGTA+TGG + chr6_4:5333769-5333788 None:intergenic 35.0%
! GTACTAGGTTAATGGGTCAT+TGG + chr6_4:5330427-5330446 None:intergenic 40.0%
!! TACATCCTCAGAAGAGTACT+AGG + chr6_4:5330442-5330461 None:intergenic 40.0%
! TACTCTTCTGAGGATGTAAC+TGG - chr6_4:5330444-5330463 Msa0973010:three_prime_UTR 40.0%
!! TAATGTGCTGGTTCTTTCAG+TGG - chr6_4:5330602-5330621 Msa0973010:intron 40.0%
AGTAATCCAAGTAGCAGCTA+GGG + chr6_4:5331063-5331082 None:intergenic 40.0%
TAGTAATCCAAGTAGCAGCT+AGG + chr6_4:5331064-5331083 None:intergenic 40.0%
! CAAGTTGAGAAAGGACAATC+TGG + chr6_4:5331158-5331177 None:intergenic 40.0%
CCCCATAACGTAAAACTTCT+AGG + chr6_4:5331273-5331292 None:intergenic 40.0%
GTCCCACCTTTAATCAGATA+TGG - chr6_4:5331355-5331374 Msa0973010:CDS 40.0%
CCATTACCAAAACTCGCTTA+TGG + chr6_4:5331417-5331436 None:intergenic 40.0%
!! CCATAAGCGAGTTTTGGTAA+TGG - chr6_4:5331414-5331433 Msa0973010:intron 40.0%
!! CGGCACTTTAAAATTTGGGT+AGG + chr6_4:5331451-5331470 None:intergenic 40.0%
GACCATCGTCAATGTATTAC+AGG + chr6_4:5331567-5331586 None:intergenic 40.0%
GCTGACCATAAAGATTCGTT+GGG - chr6_4:5332384-5332403 Msa0973010:intron 40.0%
!! CAAGAAGTATTTACCGGCAA+GGG + chr6_4:5332422-5332441 None:intergenic 40.0%
!! ACAAGAAGTATTTACCGGCA+AGG + chr6_4:5332423-5332442 None:intergenic 40.0%
! TTCTATAGGTTCTGGCAATG+TGG - chr6_4:5332661-5332680 Msa0973010:intron 40.0%
TTATGACGATAAAGCTGCTG+AGG - chr6_4:5332760-5332779 Msa0973010:intron 40.0%
! GAGTGAGAAAAAGCATGCAA+TGG + chr6_4:5333399-5333418 None:intergenic 40.0%
!! ACTCCTGATAACGATTTTGC+CGG - chr6_4:5333415-5333434 Msa0973010:CDS 40.0%
TCATCTGTGCCCCTTATAAA+TGG - chr6_4:5333737-5333756 Msa0973010:five_prime_UTR 40.0%
! TGGGTTAGGCCATTTATAAG+GGG + chr6_4:5333749-5333768 None:intergenic 40.0%
AGAATGTTAAACAGTGCCCC+CGG + chr6_4:5330305-5330324 None:intergenic 45.0%
TTGGTCGATCAGTGAATCAC+TGG + chr6_4:5330408-5330427 None:intergenic 45.0%
GAGCAATATGCCCGTAAATC+AGG - chr6_4:5330666-5330685 Msa0973010:intron 45.0%
TTATACCCCTAGCTGCTACT+TGG - chr6_4:5331054-5331073 Msa0973010:intron 45.0%
GTAATCCAAGTAGCAGCTAG+GGG + chr6_4:5331062-5331081 None:intergenic 45.0%
! TCCTCTCCATAAGCGAGTTT+TGG - chr6_4:5331408-5331427 Msa0973010:intron 45.0%
ACCAAAACTCGCTTATGGAG+AGG + chr6_4:5331412-5331431 None:intergenic 45.0%
!!! GTTTTGGTAATGGCCGAGTT+AGG - chr6_4:5331424-5331443 Msa0973010:intron 45.0%
AATTTGGGTAGGGCCTAACT+CGG + chr6_4:5331440-5331459 None:intergenic 45.0%
TCTACGTCTATCACTGTGGT+GGG + chr6_4:5331521-5331540 None:intergenic 45.0%
ATCTACGTCTATCACTGTGG+TGG + chr6_4:5331522-5331541 None:intergenic 45.0%
CAGATCTACGTCTATCACTG+TGG + chr6_4:5331525-5331544 None:intergenic 45.0%
!!! GATCCCCTGTTTTGATCTTC+TGG - chr6_4:5331900-5331919 Msa0973010:intron 45.0%
TTGATCATGTGTCAAGCACG+AGG - chr6_4:5332007-5332026 Msa0973010:intron 45.0%
!!! AACCGCCGATTTTGATATGC+TGG - chr6_4:5332191-5332210 Msa0973010:intron 45.0%
!!! ACCGCCGATTTTGATATGCT+GGG - chr6_4:5332192-5332211 Msa0973010:intron 45.0%
TCCCAGCATATCAAAATCGG+CGG + chr6_4:5332196-5332215 None:intergenic 45.0%
TCCGGATTGTCGTTGTTGAT+AGG - chr6_4:5332246-5332265 Msa0973010:intron 45.0%
GCCTATCAACAACGACAATC+CGG + chr6_4:5332250-5332269 None:intergenic 45.0%
GGCTGACCATAAAGATTCGT+TGG - chr6_4:5332383-5332402 Msa0973010:intron 45.0%
GTGCACCCAACGAATCTTTA+TGG + chr6_4:5332392-5332411 None:intergenic 45.0%
AGCATATCGCGGAACAAAAG+CGG + chr6_4:5332522-5332541 None:intergenic 45.0%
CAGAATTACCTGTTCATCGC+CGG + chr6_4:5333437-5333456 None:intergenic 45.0%
ATCCAAGGTGATAGTCTGCA+AGG + chr6_4:5333569-5333588 None:intergenic 45.0%
!!! TAAAATGTTAAAAATTATTT+TGG + chr6_4:5330328-5330347 None:intergenic 5.0%
TGGTGCTTAACCAATGCTCC+GGG - chr6_4:5330284-5330303 Msa0973010:three_prime_UTR 50.0%
! CAGTGAATCACTGGCTAGAC+CGG + chr6_4:5330399-5330418 None:intergenic 50.0%
TACGTCTATCACTGTGGTGG+GGG + chr6_4:5331519-5331538 None:intergenic 50.0%
CTACGTCTATCACTGTGGTG+GGG + chr6_4:5331520-5331539 None:intergenic 50.0%
! CTGAGGCTGCACAAGGATTT+TGG - chr6_4:5332777-5332796 Msa0973010:intron 50.0%
TCTCTCTCATGGGAACACAC+GGG + chr6_4:5332808-5332827 None:intergenic 50.0%
CTCTCTCTCATGGGAACACA+CGG + chr6_4:5332809-5332828 None:intergenic 50.0%
TGTTCCCATGAGAGAGAGGT+AGG - chr6_4:5332811-5332830 Msa0973010:intron 50.0%
TGTGCCTACCTCTCTCTCAT+GGG + chr6_4:5332818-5332837 None:intergenic 50.0%
ATGTGCCTACCTCTCTCTCA+TGG + chr6_4:5332819-5332838 None:intergenic 50.0%
GGTAGGCACATCTTTACTGC+TGG - chr6_4:5332828-5332847 Msa0973010:intron 50.0%
TCGCCGGCAAAATCGTTATC+AGG + chr6_4:5333421-5333440 None:intergenic 50.0%
TGCCTTGCAGACTATCACCT+TGG - chr6_4:5333564-5333583 Msa0973010:five_prime_UTR 50.0%
GGTGCTTAACCAATGCTCCG+GGG - chr6_4:5330285-5330304 Msa0973010:three_prime_UTR 55.0%
GTGCTTAACCAATGCTCCGG+GGG - chr6_4:5330286-5330305 Msa0973010:three_prime_UTR 55.0%
ATTTACCGGCAAGGGCAGAG+TGG + chr6_4:5332414-5332433 None:intergenic 55.0%
AAAGCTGCTGAGGCTGCACA+AGG - chr6_4:5332770-5332789 Msa0973010:intron 55.0%
CGTGTGTTCCCATGAGAGAG+AGG - chr6_4:5332807-5332826 Msa0973010:intron 55.0%
! CGATTTTGCCGGCGATGAAC+AGG - chr6_4:5333426-5333445 Msa0973010:CDS 55.0%
AAACAGTGCCCCCGGAGCAT+TGG + chr6_4:5330297-5330316 None:intergenic 60.0%
GTGCACCACTCTGCCCTTGC+CGG - chr6_4:5332406-5332425 Msa0973010:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5330284 5333865 5330284 ID=Msa0973010;Name=Msa0973010
chr6_4 mRNA 5330284 5333865 5330284 ID=Msa0973010-mRNA-1;Parent=Msa0973010;Name=Msa0973010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=367|0.75|0.8|1|0.75|0.8|5|247|94
chr6_4 exon 5330284 5330575 5330284 ID=Msa0973010-mRNA-1:exon:2294;Parent=Msa0973010-mRNA-1
chr6_4 exon 5330702 5330762 5330702 ID=Msa0973010-mRNA-1:exon:2293;Parent=Msa0973010-mRNA-1
chr6_4 exon 5331321 5331392 5331321 ID=Msa0973010-mRNA-1:exon:2292;Parent=Msa0973010-mRNA-1
chr6_4 exon 5331749 5331771 5331749 ID=Msa0973010-mRNA-1:exon:2291;Parent=Msa0973010-mRNA-1
chr6_4 exon 5333415 5333865 5333415 ID=Msa0973010-mRNA-1:exon:2290;Parent=Msa0973010-mRNA-1
chr6_4 five_prime_UTR 5333499 5333865 5333499 ID=Msa0973010-mRNA-1:five_prime_utr;Parent=Msa0973010-mRNA-1
chr6_4 CDS 5333415 5333498 5333415 ID=Msa0973010-mRNA-1:cds;Parent=Msa0973010-mRNA-1
chr6_4 CDS 5331749 5331771 5331749 ID=Msa0973010-mRNA-1:cds;Parent=Msa0973010-mRNA-1
chr6_4 CDS 5331321 5331392 5331321 ID=Msa0973010-mRNA-1:cds;Parent=Msa0973010-mRNA-1
chr6_4 CDS 5330702 5330762 5330702 ID=Msa0973010-mRNA-1:cds;Parent=Msa0973010-mRNA-1
chr6_4 CDS 5330531 5330575 5330531 ID=Msa0973010-mRNA-1:cds;Parent=Msa0973010-mRNA-1
chr6_4 three_prime_UTR 5330284 5330530 5330284 ID=Msa0973010-mRNA-1:three_prime_utr;Parent=Msa0973010-mRNA-1
Gene Sequence

>Msa0973010

ATGAGGAAGTTCTCAGAGCAATATGCCCGTAAATCAGGAACATTCTTTTGTGCTGACAAAGGAGTAACTGCTGTTGTTATCAAGGGTTTGGCTGACCATAAAGATTCGCATTATGACGATAAAGCTGCTGAGGCTGCACAAGGATTTTGGAATTGCCCGTGTGTTCCCATGAGAGAGAGAAAGGAGTGCCATTGCATGCTTTTTCTCACTCCTGATAACGATTTTGCCGGCGATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCAAATATGTAA

Protein sequence

>Msa0973010

MRKFSEQYARKSGTFFCADKGVTAVVIKGLADHKDSHYDDKAAEAAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGDEQTITLDEIKESTANM*