Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383560 | KEH36054.1 | 80.430 | 419 | 22 | 3 | 1 | 366 | 1 | 412 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383560 | sp|Q8W4K5|VAB_ARATH | 49.573 | 117 | 50 | 3 | 244 | 359 | 372 | 480 | 2.95e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383560 | G7ZWI5 | 80.430 | 419 | 22 | 3 | 1 | 366 | 1 | 412 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173380 | Msa0383560 | 0.800610 | 1.329492e-48 | -8.615850e-47 |
| Msa0221180 | Msa0383560 | 0.805355 | 1.389104e-49 | -8.615850e-47 |
| Msa0383560 | Msa0384870 | 0.811756 | 5.970310e-51 | -8.615850e-47 |
| Msa0383560 | Msa0455970 | 0.811470 | 6.889207e-51 | -8.615850e-47 |
| Msa0383560 | Msa0466520 | 0.801318 | 9.529315e-49 | -8.615850e-47 |
| Msa0383560 | Msa0486460 | 0.814993 | 1.161047e-51 | -8.615850e-47 |
| Msa0383560 | Msa0513080 | 0.807832 | 4.169785e-50 | -8.615850e-47 |
| Msa0383560 | Msa0521830 | 0.909673 | 4.391178e-82 | -8.615850e-47 |
| Msa0383560 | Msa0541740 | 0.801332 | 9.463932e-49 | -8.615850e-47 |
| Msa0383560 | Msa0557850 | 0.820655 | 6.115619e-53 | -8.615850e-47 |
| Msa0383560 | Msa0570010 | 0.805860 | 1.088811e-49 | -8.615850e-47 |
| Msa0383560 | Msa0612520 | 0.829472 | 5.050553e-55 | -8.615850e-47 |
| Msa0383560 | Msa0619710 | 0.820564 | 6.416649e-53 | -8.615850e-47 |
| Msa0383560 | Msa0620900 | 0.804524 | 2.072792e-49 | -8.615850e-47 |
| Msa0383560 | Msa0653160 | 0.802567 | 5.277311e-49 | -8.615850e-47 |
| Msa0383560 | Msa0695560 | 0.821134 | 4.745598e-53 | -8.615850e-47 |
| Msa0383560 | Msa0706150 | 0.822358 | 2.472048e-53 | -8.615850e-47 |
| Msa0383560 | Msa0856220 | 0.801510 | 8.702202e-49 | -8.615850e-47 |
| Msa0383560 | Msa0978980 | 0.816537 | 5.254816e-52 | -8.615850e-47 |
| Msa0383560 | Msa0989500 | 0.811491 | 6.818967e-51 | -8.615850e-47 |
| Msa0383560 | Msa1042300 | 0.818108 | 2.327861e-52 | -8.615850e-47 |
| Msa0383560 | Msa1111910 | 0.801479 | 8.831598e-49 | -8.615850e-47 |
| Msa0383560 | Msa1130780 | 0.837650 | 4.585368e-57 | -8.615850e-47 |
| Msa0383560 | Msa1154320 | 0.814621 | 1.403474e-51 | -8.615850e-47 |
| Msa0383560 | Msa1228630 | 0.801823 | 7.507391e-49 | -8.615850e-47 |
| Msa0383560 | Msa1231440 | 0.819501 | 1.123425e-52 | -8.615850e-47 |
| Msa0383560 | Msa1267930 | 0.800394 | 1.471375e-48 | -8.615850e-47 |
| Msa0383560 | Msa1278000 | 0.812180 | 4.826098e-51 | -8.615850e-47 |
| Msa0383560 | Msa1308850 | 0.829836 | 4.119290e-55 | -8.615850e-47 |
| Msa0383560 | Msa1341750 | 0.824450 | 8.017794e-54 | -8.615850e-47 |
| Msa0383560 | Msa1417930 | 0.823587 | 1.278502e-53 | -8.615850e-47 |
| Msa0383560 | Msa1450290 | 0.802813 | 4.695484e-49 | -8.615850e-47 |
| Msa0262750 | Msa0383560 | 0.813973 | 1.951739e-51 | -8.615850e-47 |
| Msa0300470 | Msa0383560 | 0.803730 | 3.032691e-49 | -8.615850e-47 |
| Msa0314080 | Msa0383560 | 0.804606 | 1.993132e-49 | -8.615850e-47 |
| Msa0337970 | Msa0383560 | 0.803260 | 3.795302e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383560 | MtrunA17_Chr3g0140081 | 78.947 | 380 | 20 | 3 | 40 | 366 | 1 | 373 | 0.0 | 550 |
| Msa0383560 | MtrunA17_Chr4g0019631 | 69.565 | 276 | 23 | 4 | 97 | 319 | 20 | 287 | 4.24e-106 | 313 |
| Msa0383560 | MtrunA17_Chr5g0399391 | 30.529 | 416 | 160 | 14 | 12 | 359 | 24 | 378 | 6.32e-36 | 134 |
| Msa0383560 | MtrunA17_Chr1g0185201 | 49.573 | 117 | 51 | 2 | 244 | 359 | 364 | 473 | 6.62e-31 | 122 |
| Msa0383560 | MtrunA17_Chr7g0260211 | 39.157 | 166 | 80 | 4 | 208 | 359 | 305 | 463 | 9.42e-31 | 122 |
| Msa0383560 | MtrunA17_Chr1g0166381 | 44.776 | 134 | 64 | 3 | 233 | 363 | 335 | 461 | 1.74e-28 | 115 |
| Msa0383560 | MtrunA17_Chr1g0204831 | 42.975 | 121 | 61 | 2 | 244 | 363 | 335 | 448 | 3.46e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383560 | AT4G32780.1 | 40.000 | 410 | 157 | 11 | 13 | 360 | 13 | 395 | 1.62e-63 | 208 |
| Msa0383560 | AT4G32780.2 | 40.000 | 410 | 157 | 11 | 13 | 360 | 32 | 414 | 2.65e-63 | 208 |
| Msa0383560 | AT5G43870.1 | 45.902 | 122 | 58 | 2 | 244 | 364 | 334 | 448 | 2.13e-28 | 115 |
| Msa0383560 | AT5G43870.1 | 31.319 | 182 | 66 | 8 | 33 | 167 | 22 | 191 | 4.76e-12 | 67.4 |
| Msa0383560 | AT3G22810.3 | 46.018 | 113 | 53 | 2 | 248 | 359 | 217 | 322 | 1.81e-26 | 108 |
| Msa0383560 | AT3G22810.1 | 46.018 | 113 | 53 | 2 | 248 | 359 | 355 | 460 | 3.58e-26 | 109 |
| Msa0383560 | AT3G22810.1 | 30.811 | 185 | 72 | 7 | 33 | 167 | 18 | 196 | 1.71e-12 | 68.9 |
| Msa0383560 | AT4G14740.3 | 48.673 | 113 | 50 | 2 | 248 | 359 | 221 | 326 | 7.68e-26 | 106 |
| Msa0383560 | AT4G14740.1 | 48.673 | 113 | 50 | 2 | 248 | 359 | 360 | 465 | 1.85e-25 | 107 |
| Msa0383560 | AT4G14740.1 | 29.897 | 194 | 83 | 6 | 25 | 167 | 10 | 201 | 1.25e-12 | 69.3 |
| Msa0383560 | AT4G14740.2 | 48.673 | 113 | 50 | 2 | 248 | 359 | 360 | 465 | 1.85e-25 | 107 |
| Msa0383560 | AT4G14740.2 | 29.897 | 194 | 83 | 6 | 25 | 167 | 10 | 201 | 1.25e-12 | 69.3 |
| Msa0383560 | AT3G63300.1 | 49.573 | 117 | 50 | 3 | 244 | 359 | 372 | 480 | 3.00e-25 | 107 |
| Msa0383560 | AT3G63300.2 | 51.327 | 113 | 46 | 3 | 248 | 359 | 218 | 322 | 3.37e-25 | 104 |
| Msa0383560 | AT4G17350.1 | 42.609 | 115 | 55 | 3 | 250 | 361 | 282 | 388 | 3.38e-21 | 94.4 |
| Msa0383560 | AT5G47440.1 | 41.129 | 124 | 57 | 3 | 244 | 359 | 268 | 383 | 8.37e-21 | 93.2 |
| Msa0383560 | AT4G16670.1 | 37.838 | 111 | 62 | 1 | 250 | 360 | 306 | 409 | 8.78e-18 | 84.7 |
| Msa0383560 | AT4G32780.3 | 40.881 | 159 | 75 | 5 | 13 | 167 | 32 | 175 | 3.05e-14 | 72.8 |
| Msa0383560 | AT4G14740.4 | 29.897 | 194 | 83 | 6 | 25 | 167 | 10 | 201 | 8.62e-13 | 69.7 |
| Msa0383560 | AT4G14740.4 | 69.565 | 46 | 14 | 0 | 248 | 293 | 360 | 405 | 9.97e-12 | 66.2 |
| Msa0383560 | AT3G22810.2 | 30.811 | 185 | 72 | 7 | 33 | 167 | 18 | 196 | 1.55e-12 | 68.9 |
| Msa0383560 | AT3G22810.2 | 71.111 | 45 | 13 | 0 | 248 | 292 | 355 | 399 | 2.98e-12 | 67.8 |
| Msa0383560 | AT5G43870.2 | 31.319 | 182 | 66 | 8 | 33 | 167 | 22 | 191 | 3.08e-12 | 67.8 |
| Msa0383560 | AT5G43870.2 | 62.000 | 50 | 19 | 0 | 244 | 293 | 334 | 383 | 5.93e-11 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCAAGATGTTTGCTTCTT+TGG | 0.173797 | 3_1:-86475990 | Msa0383570:three_prime_UTR |
| AAGCCATGGTAGGGTTCTTT+TGG | 0.263821 | 3_1:-86475191 | None:intergenic |
| CAATATTAATTCAAATTTGC+AGG | 0.290334 | 3_1:+86476231 | Msa0383560:CDS |
| ATAGATTCAGTTGGGGTATC+AGG | 0.319275 | 3_1:-86474255 | None:intergenic |
| TTAAGGTATGGCCTATAAAA+TGG | 0.322149 | 3_1:+86476484 | Msa0383560:intron |
| TGATACCCCAACTGAATCTA+TGG | 0.354845 | 3_1:+86474257 | Msa0383560:CDS |
| AGTCAAAACTTGCTGAGAAA+TGG | 0.357192 | 3_1:+86474878 | Msa0383560:CDS |
| GTCAAAACTTGCTGAGAAAT+GGG | 0.371194 | 3_1:+86474879 | Msa0383560:CDS |
| GCACTGGACTGTGTCTTTAG+AGG | 0.393135 | 3_1:+86476013 | Msa0383560:CDS |
| TAAAACCCTTGGTATAAAAC+TGG | 0.394669 | 3_1:-86474392 | None:intergenic |
| CGCGGCAATTCAACATGTAC+TGG | 0.395036 | 3_1:-86476670 | Msa0383570:three_prime_UTR |
| GCCGGTGGAGGTCGTAGAAT+TGG | 0.412677 | 3_1:-86474340 | None:intergenic |
| TGCTACTTTGAAGGCACGTC+TGG | 0.412837 | 3_1:+86475913 | Msa0383560:intron |
| ATGAAAAGCAAGCATATTGC+AGG | 0.418625 | 3_1:+86476380 | Msa0383560:CDS |
| TTTGTTTCGCTACTTTCTCT+TGG | 0.421551 | 3_1:-86474672 | None:intergenic |
| GGACAAACAGTTCTGGTTAG+AGG | 0.430777 | 3_1:+86476643 | Msa0383560:CDS |
| CTTCTCAAACGTACAAGAAA+AGG | 0.445894 | 3_1:+86476043 | Msa0383560:CDS |
| GCACGTCTGGAGAAAGGGCT+TGG | 0.450167 | 3_1:+86475926 | Msa0383560:CDS |
| GTAAAGAGGACAAACAGTTC+TGG | 0.451439 | 3_1:+86476636 | Msa0383560:CDS |
| TTTCCCTTCCGGGCCAAGCT+GGG | 0.455831 | 3_1:-86476538 | Msa0383570:three_prime_UTR |
| ATTGGTGCTGTGCAGTGCTT+TGG | 0.456986 | 3_1:-86474322 | None:intergenic |
| CTTTACAGGAGCTTGATAAG+AGG | 0.459858 | 3_1:+86475006 | Msa0383560:CDS |
| GGAACTCCATAGATTCAGTT+GGG | 0.462785 | 3_1:-86474263 | None:intergenic |
| TGGAGTTCCTTGCTAGATCA+TGG | 0.476162 | 3_1:+86474277 | Msa0383560:CDS |
| AGCTTGGCCCGGAAGGGAAA+AGG | 0.486161 | 3_1:+86476541 | Msa0383560:CDS |
| CAATAACAGGAGTTCTTCAC+TGG | 0.490229 | 3_1:+86476194 | Msa0383560:intron |
| TTGAAGGCACGTCTGGAGAA+AGG | 0.490313 | 3_1:+86475920 | Msa0383560:intron |
| AGCAAACATCTTGACAGCAC+TGG | 0.491176 | 3_1:+86475997 | Msa0383560:CDS |
| TTGAATATCAATGCCGGTGG+AGG | 0.500588 | 3_1:-86474352 | None:intergenic |
| AGCTGCAACTGCTGCAACAG+CGG | 0.501387 | 3_1:-86475136 | None:intergenic |
| TGAAGGCACGTCTGGAGAAA+GGG | 0.507302 | 3_1:+86475921 | Msa0383560:intron |
| ATATCCCAGCTTGGCCCGGA+AGG | 0.509324 | 3_1:+86476534 | Msa0383560:CDS |
| CACGCCGCAGTATCTGTAGT+TGG | 0.523810 | 3_1:+86475105 | Msa0383560:CDS |
| AGCGATATCCCAGCTTGGCC+CGG | 0.529305 | 3_1:+86476530 | Msa0383560:CDS |
| GGTGCGGCGCAAGATGATGC+AGG | 0.533572 | 3_1:-86474234 | None:intergenic |
| TTGGTATAAAACTGGTCAGA+AGG | 0.533621 | 3_1:-86474384 | None:intergenic |
| ACCAATTCTACGACCTCCAC+CGG | 0.534512 | 3_1:+86474339 | Msa0383560:CDS |
| ATTTGAATGCGGAAGTAAAG+AGG | 0.536918 | 3_1:+86476622 | Msa0383560:CDS |
| TTTACAGGAGCTTGATAAGA+GGG | 0.537169 | 3_1:+86475007 | Msa0383560:CDS |
| TAAATGCTCAGTTCTTCAGC+TGG | 0.537790 | 3_1:+86474179 | Msa0383560:CDS |
| TTGATAAGAGGGAGGACTAC+GGG | 0.539110 | 3_1:+86475018 | Msa0383560:CDS |
| GACAAACAGTTCTGGTTAGA+GGG | 0.540714 | 3_1:+86476644 | Msa0383560:CDS |
| CCGCACTTCTCCTCAACAGT+TGG | 0.540993 | 3_1:-86475962 | Msa0383570:three_prime_UTR |
| AGGAACTCCATAGATTCAGT+TGG | 0.556560 | 3_1:-86474264 | None:intergenic |
| CTTGATAAGAGGGAGGACTA+CGG | 0.557702 | 3_1:+86475017 | Msa0383560:CDS |
| TGCAATTGCAGCAGAAGCCA+TGG | 0.565370 | 3_1:-86475205 | None:intergenic |
| GGAATTCTGGAGAAAGTGCT+TGG | 0.567645 | 3_1:-86474850 | None:intergenic |
| TATGTTTAGCAGCTATCTAA+CGG | 0.568335 | 3_1:+86474630 | Msa0383560:intron |
| TGGTATAAAACTGGTCAGAA+GGG | 0.573962 | 3_1:-86474383 | None:intergenic |
| GGTTGAAAGATCAGAAGGAG+AGG | 0.575835 | 3_1:+86475046 | Msa0383560:CDS |
| TAAAAGTTGAATATCAATGC+CGG | 0.583139 | 3_1:-86474358 | None:intergenic |
| TTCAGTATGTTACATTGGCG+CGG | 0.587089 | 3_1:-86476688 | Msa0383570:three_prime_UTR |
| ATTGCAGCAGAAGCCATGGT+AGG | 0.594587 | 3_1:-86475201 | None:intergenic |
| TGTGCAGCGATATCCCAGCT+TGG | 0.596256 | 3_1:+86476525 | Msa0383560:CDS |
| TATCCCAGCTTGGCCCGGAA+GGG | 0.598830 | 3_1:+86476535 | Msa0383560:CDS |
| TTCAGTTGGGGTATCAGGTG+CGG | 0.602534 | 3_1:-86474250 | None:intergenic |
| TTGCAGCAGAAGCCATGGTA+GGG | 0.605912 | 3_1:-86475200 | None:intergenic |
| AAAATGGCAGATATAGTCAC+CGG | 0.606175 | 3_1:+86476500 | Msa0383560:CDS |
| GAGGGAGGACTACGGGTAGG+TGG | 0.615301 | 3_1:+86475025 | Msa0383560:CDS |
| AAGAGAAAGTAGCGAAACAA+AGG | 0.615309 | 3_1:+86474674 | Msa0383560:CDS |
| TGGGATATCGCTGCACACTC+CGG | 0.618172 | 3_1:-86476519 | Msa0383570:three_prime_UTR |
| AAAGACTCCATGATCTAGCA+AGG | 0.625812 | 3_1:-86474284 | None:intergenic |
| CTGGACTGTGTCTTTAGAGG+AGG | 0.632407 | 3_1:+86476016 | Msa0383560:CDS |
| TAGGTGGTTGAAAGATCAGA+AGG | 0.633447 | 3_1:+86475041 | Msa0383560:CDS |
| TCAAAACTTGCTGAGAAATG+GGG | 0.639012 | 3_1:+86474880 | Msa0383560:CDS |
| TACTACGATTCCAACTGTTG+AGG | 0.640288 | 3_1:+86475952 | Msa0383560:CDS |
| TAAGAGGGAGGACTACGGGT+AGG | 0.643903 | 3_1:+86475022 | Msa0383560:CDS |
| ACAGGAGCTTGATAAGAGGG+AGG | 0.655763 | 3_1:+86475010 | Msa0383560:CDS |
| AAGTTGAATATCAATGCCGG+TGG | 0.660607 | 3_1:-86474355 | None:intergenic |
| CAACCAAAAGAACCCTACCA+TGG | 0.662228 | 3_1:+86475188 | Msa0383560:CDS |
| AGATTAATAGAATTTGAATG+CGG | 0.671794 | 3_1:+86476611 | Msa0383560:CDS |
| GGAAGGGAAAAGGAAGACAA+CGG | 0.672432 | 3_1:+86476551 | Msa0383560:CDS |
| GAACTCCATAGATTCAGTTG+GGG | 0.682676 | 3_1:-86474262 | None:intergenic |
| AACACCAACTACAGATACTG+CGG | 0.695742 | 3_1:-86475109 | None:intergenic |
| CCAACTGTTGAGGAGAAGTG+CGG | 0.712451 | 3_1:+86475962 | Msa0383560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTTAGTATATATAAT+TGG | + | chr3_1:86474783-86474802 | Msa0383560:intron | 10.0% |
| !! | AAATTTATTGATATTTAAAC+TGG | + | chr3_1:86475601-86475620 | Msa0383560:intron | 10.0% |
| !! | ATAAAATACAATGAACTAAA+TGG | + | chr3_1:86475874-86475893 | Msa0383560:intron | 15.0% |
| !!! | TATTGACATTTAAAATAGTA+TGG | - | chr3_1:86476179-86476198 | Msa0383570:three_prime_UTR | 15.0% |
| !! | AATTAAACTGTTAGTAAACA+AGG | - | chr3_1:86475424-86475443 | None:intergenic | 20.0% |
| !!! | AATATACCAATTTTTGCTTT+TGG | + | chr3_1:86475550-86475569 | Msa0383560:intron | 20.0% |
| !! | CAAATACTCTACAAATTAAA+GGG | - | chr3_1:86475628-86475647 | None:intergenic | 20.0% |
| !! | TCAAATACTCTACAAATTAA+AGG | - | chr3_1:86475629-86475648 | None:intergenic | 20.0% |
| !! | ATTTATATAGCCATTAAAAC+TGG | - | chr3_1:86475717-86475736 | None:intergenic | 20.0% |
| !! | ATAAATTTAGTTAAGCTCAA+AGG | + | chr3_1:86475731-86475750 | Msa0383560:intron | 20.0% |
| !!! | CTATTTTAAATGTCAATAAC+AGG | + | chr3_1:86476181-86476200 | Msa0383560:intron | 20.0% |
| !! | CAATATTAATTCAAATTTGC+AGG | + | chr3_1:86476231-86476250 | Msa0383560:CDS | 20.0% |
| !!! | AAGTTTTGTATACTGAAATT+TGG | - | chr3_1:86476434-86476453 | Msa0383570:intron | 20.0% |
| !! | AGATTAATAGAATTTGAATG+CGG | + | chr3_1:86476611-86476630 | Msa0383560:CDS | 20.0% |
| ! | TAAAAGTTGAATATCAATGC+CGG | - | chr3_1:86474361-86474380 | None:intergenic | 25.0% |
| ! | ATTTAAGAAAACGTTCTTAC+AGG | - | chr3_1:86474435-86474454 | None:intergenic | 25.0% |
| ! | TCTTAATATTGAAGAATCCT+AGG | - | chr3_1:86474545-86474564 | None:intergenic | 25.0% |
| ! | TAGGATTCTTCAATATTAAG+AGG | + | chr3_1:86474544-86474563 | Msa0383560:intron | 25.0% |
| !!! | GATAGCTTTAACTATGTTTT+TGG | + | chr3_1:86475458-86475477 | Msa0383560:intron | 25.0% |
| ! | CAAAAATTGGTATATTTGCA+GGG | - | chr3_1:86475546-86475565 | None:intergenic | 25.0% |
| ! | ATTAAGTATGAGCAATGTAA+TGG | + | chr3_1:86475773-86475792 | Msa0383560:intron | 25.0% |
| !! | CGTAAACTGATTTAAACATT+TGG | - | chr3_1:86476140-86476159 | Msa0383570:three_prime_UTR | 25.0% |
| !!! | TGTGATTTGTTAATGAATGT+AGG | - | chr3_1:86476275-86476294 | Msa0383570:intron | 25.0% |
| !!! | AATATGCTTGCTTTTCATTT+TGG | - | chr3_1:86476378-86476397 | Msa0383570:intron | 25.0% |
| TAAAACCCTTGGTATAAAAC+TGG | - | chr3_1:86474395-86474414 | None:intergenic | 30.0% | |
| !!! | TTCCTGTTGCTTTTATGTAT+TGG | + | chr3_1:86474586-86474605 | Msa0383560:intron | 30.0% |
| AACCAATACATAAAAGCAAC+AGG | - | chr3_1:86474591-86474610 | None:intergenic | 30.0% | |
| TATGTTTAGCAGCTATCTAA+CGG | + | chr3_1:86474630-86474649 | Msa0383560:intron | 30.0% | |
| ACATGAGTAGTAAGTAAACT+AGG | - | chr3_1:86474702-86474721 | None:intergenic | 30.0% | |
| CTACTCATGTTAAACTTGTA+CGG | + | chr3_1:86474712-86474731 | Msa0383560:intron | 30.0% | |
| ATTGAGATTGCAGAAGATAT+GGG | + | chr3_1:86475258-86475277 | Msa0383560:intron | 30.0% | |
| ! | AGTCAATTGCTGTTATGATT+TGG | - | chr3_1:86475296-86475315 | None:intergenic | 30.0% |
| GCTATTAATGCAAAAACCAA+TGG | + | chr3_1:86475318-86475337 | Msa0383560:intron | 30.0% | |
| TAGAGTCATAATATCTCCAT+TGG | - | chr3_1:86475337-86475356 | None:intergenic | 30.0% | |
| GCAAAAATTGGTATATTTGC+AGG | - | chr3_1:86475547-86475566 | None:intergenic | 30.0% | |
| TAGAAATGAACTCAGTTTGT+AGG | - | chr3_1:86475819-86475838 | Msa0383570:three_prime_UTR | 30.0% | |
| TGAAGTCATTGTTACAAACA+TGG | - | chr3_1:86476087-86476106 | Msa0383570:three_prime_UTR | 30.0% | |
| TGTTACTGTAAGCAATGTTA+AGG | + | chr3_1:86476467-86476486 | Msa0383560:intron | 30.0% | |
| TTAAGGTATGGCCTATAAAA+TGG | + | chr3_1:86476484-86476503 | Msa0383560:intron | 30.0% | |
| !!! | GACTATATCTGCCATTTTAT+AGG | - | chr3_1:86476498-86476517 | Msa0383570:three_prime_UTR | 30.0% |
| TGGTATAAAACTGGTCAGAA+GGG | - | chr3_1:86474386-86474405 | None:intergenic | 35.0% | |
| TTGGTATAAAACTGGTCAGA+AGG | - | chr3_1:86474387-86474406 | None:intergenic | 35.0% | |
| !! | TTCTGACCAGTTTTATACCA+AGG | + | chr3_1:86474386-86474405 | Msa0383560:CDS | 35.0% |
| !! | TCTGACCAGTTTTATACCAA+GGG | + | chr3_1:86474387-86474406 | Msa0383560:CDS | 35.0% |
| ! | TCTTACAGGATCTTCTTTTG+AGG | - | chr3_1:86474421-86474440 | None:intergenic | 35.0% |
| TGTTGCATTGCATTGTGAAA+AGG | - | chr3_1:86474481-86474500 | None:intergenic | 35.0% | |
| CAGGAACACAAGACAATATT+AGG | - | chr3_1:86474572-86474591 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGCTACTTTCTCT+TGG | - | chr3_1:86474675-86474694 | None:intergenic | 35.0% |
| AAGAGAAAGTAGCGAAACAA+AGG | + | chr3_1:86474674-86474693 | Msa0383560:CDS | 35.0% | |
| CTTAGTAATCGTTCATATGC+AGG | + | chr3_1:86474811-86474830 | Msa0383560:intron | 35.0% | |
| !! | TTTTGACTGGAAAGGAATTC+TGG | - | chr3_1:86474866-86474885 | None:intergenic | 35.0% |
| !! | ATTTCTCAGCAAGTTTTGAC+TGG | - | chr3_1:86474879-86474898 | None:intergenic | 35.0% |
| !! | AGTCAAAACTTGCTGAGAAA+TGG | + | chr3_1:86474878-86474897 | Msa0383560:CDS | 35.0% |
| !! | GTCAAAACTTGCTGAGAAAT+GGG | + | chr3_1:86474879-86474898 | Msa0383560:CDS | 35.0% |
| !! | TCAAAACTTGCTGAGAAATG+GGG | + | chr3_1:86474880-86474899 | Msa0383560:CDS | 35.0% |
| ! | TTTTTGCTCATCAGCTTTAC+AGG | + | chr3_1:86474992-86475011 | Msa0383560:intron | 35.0% |
| TTTACAGGAGCTTGATAAGA+GGG | + | chr3_1:86475007-86475026 | Msa0383560:CDS | 35.0% | |
| AGAGGAAAAAACAGGAAATC+AGG | + | chr3_1:86475064-86475083 | Msa0383560:CDS | 35.0% | |
| CATTGAGATTGCAGAAGATA+TGG | + | chr3_1:86475257-86475276 | Msa0383560:intron | 35.0% | |
| GATATTATGACTCTAACAGC+CGG | + | chr3_1:86475342-86475361 | Msa0383560:intron | 35.0% | |
| CAACGACCAAAAGCAAAAAT+TGG | - | chr3_1:86475559-86475578 | None:intergenic | 35.0% | |
| ! | ATAGCCATTAAAACTGGTCT+GGG | - | chr3_1:86475711-86475730 | None:intergenic | 35.0% |
| TATAGCCATTAAAACTGGTC+TGG | - | chr3_1:86475712-86475731 | None:intergenic | 35.0% | |
| TGTCAAGATGTTTGCTTCTT+TGG | - | chr3_1:86475993-86476012 | Msa0383570:three_prime_UTR | 35.0% | |
| CTTCTCAAACGTACAAGAAA+AGG | + | chr3_1:86476043-86476062 | Msa0383560:CDS | 35.0% | |
| ACAAATCACACACGAGTTAT+TGG | + | chr3_1:86476285-86476304 | Msa0383560:intron | 35.0% | |
| CTATTCAACACAATGACTAC+AGG | + | chr3_1:86476346-86476365 | Msa0383560:intron | 35.0% | |
| ATGAAAAGCAAGCATATTGC+AGG | + | chr3_1:86476380-86476399 | Msa0383560:CDS | 35.0% | |
| CTGTAAGCAATGTTAAGGTA+TGG | + | chr3_1:86476472-86476491 | Msa0383560:intron | 35.0% | |
| AAAATGGCAGATATAGTCAC+CGG | + | chr3_1:86476500-86476519 | Msa0383560:CDS | 35.0% | |
| !! | GGCAAAAAGAGAGCATATTT+TGG | + | chr3_1:86476572-86476591 | Msa0383560:CDS | 35.0% |
| ATTTGAATGCGGAAGTAAAG+AGG | + | chr3_1:86476622-86476641 | Msa0383560:CDS | 35.0% | |
| TAAATGCTCAGTTCTTCAGC+TGG | + | chr3_1:86474179-86474198 | Msa0383560:CDS | 40.0% | |
| ! | ATAGATTCAGTTGGGGTATC+AGG | - | chr3_1:86474258-86474277 | None:intergenic | 40.0% |
| TGATACCCCAACTGAATCTA+TGG | + | chr3_1:86474257-86474276 | Msa0383560:CDS | 40.0% | |
| GAACTCCATAGATTCAGTTG+GGG | - | chr3_1:86474265-86474284 | None:intergenic | 40.0% | |
| GGAACTCCATAGATTCAGTT+GGG | - | chr3_1:86474266-86474285 | None:intergenic | 40.0% | |
| AGGAACTCCATAGATTCAGT+TGG | - | chr3_1:86474267-86474286 | None:intergenic | 40.0% | |
| AAAGACTCCATGATCTAGCA+AGG | - | chr3_1:86474287-86474306 | None:intergenic | 40.0% | |
| AAGTTGAATATCAATGCCGG+TGG | - | chr3_1:86474358-86474377 | None:intergenic | 40.0% | |
| !!! | TTTTGAGGCAGTAAAACCCT+TGG | - | chr3_1:86474406-86474425 | None:intergenic | 40.0% |
| ACTTCTATCTACAGCGTACA+TGG | - | chr3_1:86474522-86474541 | None:intergenic | 40.0% | |
| !!! | TCAGCAAGTTTTGACTGGAA+AGG | - | chr3_1:86474874-86474893 | None:intergenic | 40.0% |
| CTTTACAGGAGCTTGATAAG+AGG | + | chr3_1:86475006-86475025 | Msa0383560:CDS | 40.0% | |
| TAGGTGGTTGAAAGATCAGA+AGG | + | chr3_1:86475041-86475060 | Msa0383560:CDS | 40.0% | |
| TCAGAAGGAGAGGAAAAAAC+AGG | + | chr3_1:86475056-86475075 | Msa0383560:CDS | 40.0% | |
| AACACCAACTACAGATACTG+CGG | - | chr3_1:86475112-86475131 | None:intergenic | 40.0% | |
| ! | TTGGTTGGGATTAGGCTTTT+CGG | - | chr3_1:86475175-86475194 | None:intergenic | 40.0% |
| !! | ATGGTAGGGTTCTTTTGGTT+GGG | - | chr3_1:86475189-86475208 | None:intergenic | 40.0% |
| !! | ACTTTAGAGTCTGATACCTG+TGG | - | chr3_1:86475373-86475392 | None:intergenic | 40.0% |
| !! | CTGGGGTTTGACTTTTACAT+TGG | - | chr3_1:86475693-86475712 | None:intergenic | 40.0% |
| !! | AAACCCCAGACCAGTTTTAA+TGG | + | chr3_1:86475704-86475723 | Msa0383560:intron | 40.0% |
| ! | TAGCCATTAAAACTGGTCTG+GGG | - | chr3_1:86475710-86475729 | None:intergenic | 40.0% |
| TACTACGATTCCAACTGTTG+AGG | + | chr3_1:86475952-86475971 | Msa0383560:CDS | 40.0% | |
| CAATAACAGGAGTTCTTCAC+TGG | + | chr3_1:86476194-86476213 | Msa0383560:intron | 40.0% | |
| GTAAAGAGGACAAACAGTTC+TGG | + | chr3_1:86476636-86476655 | Msa0383560:CDS | 40.0% | |
| ! | GACAAACAGTTCTGGTTAGA+GGG | + | chr3_1:86476644-86476663 | Msa0383560:CDS | 40.0% |
| TGGAGTTCCTTGCTAGATCA+TGG | + | chr3_1:86474277-86474296 | Msa0383560:CDS | 45.0% | |
| TTGAATATCAATGCCGGTGG+AGG | - | chr3_1:86474355-86474374 | None:intergenic | 45.0% | |
| ACGCTGTAGATAGAAGTCCT+AGG | + | chr3_1:86474525-86474544 | Msa0383560:intron | 45.0% | |
| !! | GGAATTCTGGAGAAAGTGCT+TGG | - | chr3_1:86474853-86474872 | None:intergenic | 45.0% |
| CTTGATAAGAGGGAGGACTA+CGG | + | chr3_1:86475017-86475036 | Msa0383560:CDS | 45.0% | |
| TTGATAAGAGGGAGGACTAC+GGG | + | chr3_1:86475018-86475037 | Msa0383560:CDS | 45.0% | |
| GGTTGAAAGATCAGAAGGAG+AGG | + | chr3_1:86475046-86475065 | Msa0383560:CDS | 45.0% | |
| !! | GGGTTCTTTTGGTTGGGATT+AGG | - | chr3_1:86475183-86475202 | None:intergenic | 45.0% |
| ! | CATGGTAGGGTTCTTTTGGT+TGG | - | chr3_1:86475190-86475209 | None:intergenic | 45.0% |
| CAACCAAAAGAACCCTACCA+TGG | + | chr3_1:86475188-86475207 | Msa0383560:CDS | 45.0% | |
| ! | AAGCCATGGTAGGGTTCTTT+TGG | - | chr3_1:86475194-86475213 | None:intergenic | 45.0% |
| TGCAATCTCAATGCAGTGAG+AGG | - | chr3_1:86475250-86475269 | None:intergenic | 45.0% | |
| AGAAGATATGGGAGCTGAAC+AGG | + | chr3_1:86475269-86475288 | Msa0383560:intron | 45.0% | |
| AACTAAATGGCAGCATTGCG+AGG | + | chr3_1:86475887-86475906 | Msa0383560:intron | 45.0% | |
| AGCAAACATCTTGACAGCAC+TGG | + | chr3_1:86475997-86476016 | Msa0383560:CDS | 45.0% | |
| ! | TTGTCTTCCTTTTCCCTTCC+GGG | - | chr3_1:86476551-86476570 | Msa0383570:three_prime_UTR | 45.0% |
| ! | GTTGTCTTCCTTTTCCCTTC+CGG | - | chr3_1:86476552-86476571 | Msa0383570:three_prime_UTR | 45.0% |
| GGAAGGGAAAAGGAAGACAA+CGG | + | chr3_1:86476551-86476570 | Msa0383560:CDS | 45.0% | |
| ! | GGACAAACAGTTCTGGTTAG+AGG | + | chr3_1:86476643-86476662 | Msa0383560:CDS | 45.0% |
| ! | TTCAGTTGGGGTATCAGGTG+CGG | - | chr3_1:86474253-86474272 | None:intergenic | 50.0% |
| !! | ATTGGTGCTGTGCAGTGCTT+TGG | - | chr3_1:86474325-86474344 | None:intergenic | 50.0% |
| ACCAATTCTACGACCTCCAC+CGG | + | chr3_1:86474339-86474358 | Msa0383560:CDS | 50.0% | |
| ACAGGAGCTTGATAAGAGGG+AGG | + | chr3_1:86475010-86475029 | Msa0383560:CDS | 50.0% | |
| TTGCAGCAGAAGCCATGGTA+GGG | - | chr3_1:86475203-86475222 | None:intergenic | 50.0% | |
| ATTGCAGCAGAAGCCATGGT+AGG | - | chr3_1:86475204-86475223 | None:intergenic | 50.0% | |
| TGCAATTGCAGCAGAAGCCA+TGG | - | chr3_1:86475208-86475227 | None:intergenic | 50.0% | |
| !! | TGCTACTTTGAAGGCACGTC+TGG | + | chr3_1:86475913-86475932 | Msa0383560:intron | 50.0% |
| ! | TTGAAGGCACGTCTGGAGAA+AGG | + | chr3_1:86475920-86475939 | Msa0383560:intron | 50.0% |
| ! | TGAAGGCACGTCTGGAGAAA+GGG | + | chr3_1:86475921-86475940 | Msa0383560:intron | 50.0% |
| CCAACTGTTGAGGAGAAGTG+CGG | + | chr3_1:86475962-86475981 | Msa0383560:CDS | 50.0% | |
| GCACTGGACTGTGTCTTTAG+AGG | + | chr3_1:86476013-86476032 | Msa0383560:CDS | 50.0% | |
| ! | CTGGACTGTGTCTTTAGAGG+AGG | + | chr3_1:86476016-86476035 | Msa0383560:CDS | 50.0% |
| CGCGGCAATTCAACATGTAC+TGG | - | chr3_1:86476673-86476692 | Msa0383570:three_prime_UTR | 50.0% | |
| TAAGAGGGAGGACTACGGGT+AGG | + | chr3_1:86475022-86475041 | Msa0383560:CDS | 55.0% | |
| CACGCCGCAGTATCTGTAGT+TGG | + | chr3_1:86475105-86475124 | Msa0383560:CDS | 55.0% | |
| AGCTGCAACTGCTGCAACAG+CGG | - | chr3_1:86475139-86475158 | None:intergenic | 55.0% | |
| TCTGATACCTGTGGCTGCTC+CGG | - | chr3_1:86475364-86475383 | None:intergenic | 55.0% | |
| !! | GCGAGGAGCTGCTACTTTGA+AGG | + | chr3_1:86475904-86475923 | Msa0383560:intron | 55.0% |
| CCGCACTTCTCCTCAACAGT+TGG | - | chr3_1:86475965-86475984 | Msa0383570:three_prime_UTR | 55.0% | |
| TGGGATATCGCTGCACACTC+CGG | - | chr3_1:86476522-86476541 | Msa0383570:three_prime_UTR | 55.0% | |
| TGTGCAGCGATATCCCAGCT+TGG | + | chr3_1:86476525-86476544 | Msa0383560:CDS | 55.0% | |
| GCCGGTGGAGGTCGTAGAAT+TGG | - | chr3_1:86474343-86474362 | None:intergenic | 60.0% | |
| GCACGTCTGGAGAAAGGGCT+TGG | + | chr3_1:86475926-86475945 | Msa0383560:CDS | 60.0% | |
| AGCGATATCCCAGCTTGGCC+CGG | + | chr3_1:86476530-86476549 | Msa0383560:CDS | 60.0% | |
| ATATCCCAGCTTGGCCCGGA+AGG | + | chr3_1:86476534-86476553 | Msa0383560:CDS | 60.0% | |
| TATCCCAGCTTGGCCCGGAA+GGG | + | chr3_1:86476535-86476554 | Msa0383560:CDS | 60.0% | |
| TTTCCCTTCCGGGCCAAGCT+GGG | - | chr3_1:86476541-86476560 | Msa0383570:three_prime_UTR | 60.0% | |
| ! | TTTTCCCTTCCGGGCCAAGC+TGG | - | chr3_1:86476542-86476561 | Msa0383570:three_prime_UTR | 60.0% |
| AGCTTGGCCCGGAAGGGAAA+AGG | + | chr3_1:86476541-86476560 | Msa0383560:CDS | 60.0% | |
| GGTGCGGCGCAAGATGATGC+AGG | - | chr3_1:86474237-86474256 | None:intergenic | 65.0% | |
| GAGGGAGGACTACGGGTAGG+TGG | + | chr3_1:86475025-86475044 | Msa0383560:CDS | 65.0% | |
| CTAACAGCCGGAGCAGCCAC+AGG | + | chr3_1:86475354-86475373 | Msa0383560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86474159 | 86476709 | 86474159 | ID=Msa0383560;Name=Msa0383560 |
| chr3_1 | mRNA | 86474159 | 86476709 | 86474159 | ID=Msa0383560-mRNA-1;Parent=Msa0383560;Name=Msa0383560-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.28|0.12|1|1|1|8|0|367 |
| chr3_1 | exon | 86474159 | 86474434 | 86474159 | ID=Msa0383560-mRNA-1:exon:22869;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86474642 | 86474695 | 86474642 | ID=Msa0383560-mRNA-1:exon:22870;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86474833 | 86474901 | 86474833 | ID=Msa0383560-mRNA-1:exon:22871;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86475006 | 86475242 | 86475006 | ID=Msa0383560-mRNA-1:exon:22872;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86475926 | 86476064 | 86475926 | ID=Msa0383560-mRNA-1:exon:22873;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86476203 | 86476252 | 86476203 | ID=Msa0383560-mRNA-1:exon:22874;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86476368 | 86476425 | 86476368 | ID=Msa0383560-mRNA-1:exon:22875;Parent=Msa0383560-mRNA-1 |
| chr3_1 | exon | 86476489 | 86476709 | 86476489 | ID=Msa0383560-mRNA-1:exon:22876;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86474159 | 86474434 | 86474159 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86474642 | 86474695 | 86474642 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86474833 | 86474901 | 86474833 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86475006 | 86475242 | 86475006 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86475926 | 86476064 | 86475926 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86476203 | 86476252 | 86476203 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86476368 | 86476425 | 86476368 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| chr3_1 | CDS | 86476489 | 86476709 | 86476489 | ID=Msa0383560-mRNA-1:cds;Parent=Msa0383560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
