Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521830 | KEH36054.1 | 80.430 | 419 | 22 | 3 | 1 | 366 | 1 | 412 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521830 | sp|Q8W4K5|VAB_ARATH | 49.573 | 117 | 50 | 3 | 244 | 359 | 372 | 480 | 3.15e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521830 | G7ZWI5 | 80.430 | 419 | 22 | 3 | 1 | 366 | 1 | 412 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa0521830 | 0.811074 | 8.395716e-51 | -8.615850e-47 |
| Msa0034700 | Msa0521830 | -0.809624 | 1.725981e-50 | -8.615850e-47 |
| Msa0072520 | Msa0521830 | 0.809436 | 1.893836e-50 | -8.615850e-47 |
| Msa0077570 | Msa0521830 | -0.804038 | 2.616387e-49 | -8.615850e-47 |
| Msa0080820 | Msa0521830 | 0.806926 | 6.489006e-50 | -8.615850e-47 |
| Msa0161930 | Msa0521830 | 0.810745 | 9.891546e-51 | -8.615850e-47 |
| Msa0173380 | Msa0521830 | 0.803225 | 3.858804e-49 | -8.615850e-47 |
| Msa0176060 | Msa0521830 | 0.815759 | 7.841638e-52 | -8.615850e-47 |
| Msa0381730 | Msa0521830 | 0.814189 | 1.749012e-51 | -8.615850e-47 |
| Msa0383560 | Msa0521830 | 0.909673 | 4.391178e-82 | -8.615850e-47 |
| Msa0384870 | Msa0521830 | 0.829225 | 5.797677e-55 | -8.615850e-47 |
| Msa0431200 | Msa0521830 | 0.820366 | 7.126047e-53 | -8.615850e-47 |
| Msa0451170 | Msa0521830 | 0.826316 | 2.900223e-54 | -8.615850e-47 |
| Msa0455970 | Msa0521830 | 0.827661 | 1.383024e-54 | -8.615850e-47 |
| Msa0457570 | Msa0521830 | 0.802618 | 5.151837e-49 | -8.615850e-47 |
| Msa0262750 | Msa0521830 | 0.806795 | 6.917011e-50 | -8.615850e-47 |
| Msa0284800 | Msa0521830 | 0.803865 | 2.841990e-49 | -8.615850e-47 |
| Msa0300470 | Msa0521830 | 0.813128 | 2.993705e-51 | -8.615850e-47 |
| Msa0314080 | Msa0521830 | 0.819254 | 1.278935e-52 | -8.615850e-47 |
| Msa0337970 | Msa0521830 | 0.818489 | 1.908426e-52 | -8.615850e-47 |
| Msa0342840 | Msa0521830 | 0.800635 | 1.313948e-48 | -8.615850e-47 |
| Msa0359010 | Msa0521830 | 0.820481 | 6.705667e-53 | -8.615850e-47 |
| Msa0486460 | Msa0521830 | 0.838494 | 2.780985e-57 | -8.615850e-47 |
| Msa0520260 | Msa0521830 | 0.816213 | 6.210441e-52 | -8.615850e-47 |
| Msa0521830 | Msa0570010 | 0.850561 | 1.567865e-60 | -8.615850e-47 |
| Msa0521830 | Msa0612520 | 0.818405 | 1.994473e-52 | -8.615850e-47 |
| Msa0521830 | Msa0619710 | 0.834098 | 3.647791e-56 | -8.615850e-47 |
| Msa0521830 | Msa0620900 | 0.839844 | 1.242560e-57 | -8.615850e-47 |
| Msa0521830 | Msa0655700 | 0.802426 | 5.642174e-49 | -8.615850e-47 |
| Msa0521830 | Msa0706150 | 0.828908 | 6.920787e-55 | -8.615850e-47 |
| Msa0521830 | Msa0856220 | 0.823415 | 1.402493e-53 | -8.615850e-47 |
| Msa0521830 | Msa0989500 | 0.807497 | 4.910208e-50 | -8.615850e-47 |
| Msa0521830 | Msa1040150 | 0.809005 | 2.343521e-50 | -8.615850e-47 |
| Msa0521830 | Msa1078820 | 0.808713 | 2.705171e-50 | -8.615850e-47 |
| Msa0521830 | Msa1123970 | 0.816173 | 6.337804e-52 | -8.615850e-47 |
| Msa0521830 | Msa1125250 | 0.828828 | 7.234263e-55 | -8.615850e-47 |
| Msa0521830 | Msa1130780 | 0.810911 | 9.106837e-51 | -8.615850e-47 |
| Msa0521830 | Msa1154320 | 0.838564 | 2.668877e-57 | -8.615850e-47 |
| Msa0521830 | Msa1166190 | 0.823830 | 1.121048e-53 | -8.615850e-47 |
| Msa0521830 | Msa1166290 | 0.823383 | 1.426482e-53 | -8.615850e-47 |
| Msa0521830 | Msa1169650 | 0.815993 | 6.952993e-52 | -8.615850e-47 |
| Msa0521830 | Msa1228580 | 0.820282 | 7.447017e-53 | -8.615850e-47 |
| Msa0521830 | Msa1228630 | 0.815792 | 7.708600e-52 | -8.615850e-47 |
| Msa0521830 | Msa1283960 | 0.805398 | 1.360899e-49 | -8.615850e-47 |
| Msa0521830 | Msa1308850 | 0.843946 | 1.024705e-58 | -8.615850e-47 |
| Msa0521830 | Msa1357070 | 0.817177 | 3.774442e-52 | -8.615850e-47 |
| Msa0521830 | Msa1383310 | 0.819553 | 1.093543e-52 | -8.615850e-47 |
| Msa0521830 | Msa1410160 | 0.817364 | 3.426748e-52 | -8.615850e-47 |
| Msa0521830 | Msa1417370 | 0.822676 | 2.085881e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521830 | MtrunA17_Chr3g0140081 | 78.684 | 380 | 21 | 3 | 40 | 366 | 1 | 373 | 0.0 | 548 |
| Msa0521830 | MtrunA17_Chr4g0019631 | 69.203 | 276 | 24 | 4 | 97 | 319 | 20 | 287 | 3.18e-105 | 311 |
| Msa0521830 | MtrunA17_Chr5g0399391 | 30.361 | 415 | 160 | 14 | 13 | 359 | 25 | 378 | 3.95e-35 | 132 |
| Msa0521830 | MtrunA17_Chr1g0185201 | 49.573 | 117 | 51 | 2 | 244 | 359 | 364 | 473 | 6.95e-31 | 122 |
| Msa0521830 | MtrunA17_Chr7g0260211 | 39.157 | 166 | 80 | 4 | 208 | 359 | 305 | 463 | 9.42e-31 | 122 |
| Msa0521830 | MtrunA17_Chr1g0166381 | 44.776 | 134 | 64 | 3 | 233 | 363 | 335 | 461 | 1.84e-28 | 115 |
| Msa0521830 | MtrunA17_Chr1g0204831 | 42.975 | 121 | 61 | 2 | 244 | 363 | 335 | 448 | 3.20e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521830 | AT4G32780.1 | 40.000 | 410 | 157 | 11 | 13 | 360 | 13 | 395 | 4.28e-63 | 207 |
| Msa0521830 | AT4G32780.2 | 40.000 | 410 | 157 | 11 | 13 | 360 | 32 | 414 | 1.08e-62 | 206 |
| Msa0521830 | AT5G43870.1 | 45.902 | 122 | 58 | 2 | 244 | 364 | 334 | 448 | 2.17e-28 | 115 |
| Msa0521830 | AT5G43870.1 | 30.769 | 182 | 67 | 8 | 33 | 167 | 22 | 191 | 2.30e-11 | 65.5 |
| Msa0521830 | AT3G22810.3 | 46.018 | 113 | 53 | 2 | 248 | 359 | 217 | 322 | 1.98e-26 | 108 |
| Msa0521830 | AT3G22810.1 | 46.018 | 113 | 53 | 2 | 248 | 359 | 355 | 460 | 3.83e-26 | 109 |
| Msa0521830 | AT3G22810.1 | 31.111 | 180 | 78 | 7 | 33 | 167 | 18 | 196 | 7.76e-12 | 67.0 |
| Msa0521830 | AT4G14740.3 | 48.673 | 113 | 50 | 2 | 248 | 359 | 221 | 326 | 8.08e-26 | 106 |
| Msa0521830 | AT4G14740.1 | 48.673 | 113 | 50 | 2 | 248 | 359 | 360 | 465 | 1.95e-25 | 107 |
| Msa0521830 | AT4G14740.1 | 29.381 | 194 | 84 | 6 | 25 | 167 | 10 | 201 | 5.70e-12 | 67.4 |
| Msa0521830 | AT4G14740.2 | 48.673 | 113 | 50 | 2 | 248 | 359 | 360 | 465 | 1.95e-25 | 107 |
| Msa0521830 | AT4G14740.2 | 29.381 | 194 | 84 | 6 | 25 | 167 | 10 | 201 | 5.70e-12 | 67.4 |
| Msa0521830 | AT3G63300.1 | 49.573 | 117 | 50 | 3 | 244 | 359 | 372 | 480 | 3.20e-25 | 107 |
| Msa0521830 | AT3G63300.2 | 51.327 | 113 | 46 | 3 | 248 | 359 | 218 | 322 | 4.08e-25 | 104 |
| Msa0521830 | AT4G17350.1 | 42.609 | 115 | 55 | 3 | 250 | 361 | 282 | 388 | 3.51e-21 | 94.4 |
| Msa0521830 | AT5G47440.1 | 41.129 | 124 | 57 | 3 | 244 | 359 | 268 | 383 | 7.53e-21 | 93.6 |
| Msa0521830 | AT4G16670.1 | 37.838 | 111 | 62 | 1 | 250 | 360 | 306 | 409 | 9.12e-18 | 84.7 |
| Msa0521830 | AT4G32780.3 | 40.881 | 159 | 75 | 5 | 13 | 167 | 32 | 175 | 7.03e-14 | 71.6 |
| Msa0521830 | AT3G22810.2 | 71.111 | 45 | 13 | 0 | 248 | 292 | 355 | 399 | 3.30e-12 | 67.8 |
| Msa0521830 | AT3G22810.2 | 30.270 | 185 | 73 | 7 | 33 | 167 | 18 | 196 | 6.92e-12 | 66.6 |
| Msa0521830 | AT4G14740.4 | 29.381 | 194 | 84 | 6 | 25 | 167 | 10 | 201 | 4.14e-12 | 67.4 |
| Msa0521830 | AT4G14740.4 | 69.565 | 46 | 14 | 0 | 248 | 293 | 360 | 405 | 1.05e-11 | 66.2 |
| Msa0521830 | AT5G43870.2 | 30.769 | 182 | 67 | 8 | 33 | 167 | 22 | 191 | 1.37e-11 | 65.9 |
| Msa0521830 | AT5G43870.2 | 62.000 | 50 | 19 | 0 | 244 | 293 | 334 | 383 | 6.04e-11 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCAAGATGTTTGCTTCTT+TGG | 0.173797 | 3_4:-74787582 | Msa0521840:three_prime_UTR |
| AAGCCATGGTAGGGTTCTTT+TGG | 0.263821 | 3_4:-74786780 | None:intergenic |
| CAATATTAATTCAAATTTGC+AGG | 0.290334 | 3_4:+74787823 | Msa0521830:CDS |
| ATAGATTCAGTTGGGGTATC+AGG | 0.319275 | 3_4:-74785844 | None:intergenic |
| TTAAGGTATGGCCTATAAAA+TGG | 0.322149 | 3_4:+74788076 | Msa0521830:intron |
| TGATACCCCAACTGAATCTA+TGG | 0.354845 | 3_4:+74785846 | Msa0521830:CDS |
| AGTCAAAACTTGCTGAGAAA+TGG | 0.357192 | 3_4:+74786467 | Msa0521830:CDS |
| GTCAAAACTTGCTGAGAAAT+GGG | 0.371194 | 3_4:+74786468 | Msa0521830:CDS |
| GCACTGGACTGTGTCTTTAG+AGG | 0.393135 | 3_4:+74787605 | Msa0521830:CDS |
| TAAAACCCTTGGTATAAAAC+TGG | 0.394669 | 3_4:-74785981 | None:intergenic |
| CGCGGCAATTCAACATGTAC+TGG | 0.395036 | 3_4:-74788262 | Msa0521840:three_prime_UTR |
| GCCGGTGGAGGTCGTAGAAT+TGG | 0.412677 | 3_4:-74785929 | None:intergenic |
| TGCTACTTTGAAGGCACGTC+TGG | 0.412837 | 3_4:+74787505 | Msa0521830:intron |
| ATGAAAAGCAAGCATATTGC+AGG | 0.418625 | 3_4:+74787972 | Msa0521830:CDS |
| AGACAAACAGTTCTGGTTAG+AGG | 0.420246 | 3_4:+74788235 | Msa0521830:CDS |
| TTTGTTTCGCTACTTTCTCT+TGG | 0.421551 | 3_4:-74786261 | None:intergenic |
| GTAAAGAAGACAAACAGTTC+TGG | 0.435761 | 3_4:+74788228 | Msa0521830:CDS |
| CTTCTCAAACGTACAAGAAA+AGG | 0.445894 | 3_4:+74787635 | Msa0521830:CDS |
| GCACGTCTGGAGAAAGGGCT+TGG | 0.450167 | 3_4:+74787518 | Msa0521830:CDS |
| TTTCCCTTCCGGGCCAAGCT+GGG | 0.455831 | 3_4:-74788130 | Msa0521840:three_prime_UTR |
| ATTGGTGCTGTGCAGTGCTT+TGG | 0.456986 | 3_4:-74785911 | None:intergenic |
| CTTTACAGGAGCTTGATAAG+AGG | 0.459858 | 3_4:+74786595 | Msa0521830:CDS |
| GGAACTCCATAGATTCAGTT+GGG | 0.462785 | 3_4:-74785852 | None:intergenic |
| TGGAGTTCCTTGCTAGATCA+TGG | 0.476162 | 3_4:+74785866 | Msa0521830:CDS |
| AGCTTGGCCCGGAAGGGAAA+AGG | 0.486161 | 3_4:+74788133 | Msa0521830:CDS |
| CCATAACAGGAGTTCTTCAC+TGG | 0.490229 | 3_4:+74787786 | Msa0521830:intron |
| TTGAAGGCACGTCTGGAGAA+AGG | 0.490313 | 3_4:+74787512 | Msa0521830:intron |
| AGCAAACATCTTGACAGCAC+TGG | 0.491176 | 3_4:+74787589 | Msa0521830:CDS |
| TTGAATATCAATGCCGGTGG+AGG | 0.500588 | 3_4:-74785941 | None:intergenic |
| AGCTGCAACTGCTGCAACAG+CGG | 0.501387 | 3_4:-74786725 | None:intergenic |
| TGAAGGCACGTCTGGAGAAA+GGG | 0.507302 | 3_4:+74787513 | Msa0521830:intron |
| ATATCCCAGCTTGGCCCGGA+AGG | 0.509324 | 3_4:+74788126 | Msa0521830:CDS |
| CACGCCGCAGTATCTGTAGT+TGG | 0.523810 | 3_4:+74786694 | Msa0521830:CDS |
| AGCGATATCCCAGCTTGGCC+CGG | 0.529305 | 3_4:+74788122 | Msa0521830:CDS |
| GACAAACAGTTCTGGTTAGA+GGG | 0.532361 | 3_4:+74788236 | Msa0521830:CDS |
| GGTGCGGCGCAAGATGATGC+AGG | 0.533572 | 3_4:-74785823 | None:intergenic |
| TTGGTATAAAACTGGTCAGA+AGG | 0.533621 | 3_4:-74785973 | None:intergenic |
| ACCAATTCTACGACCTCCAC+CGG | 0.534512 | 3_4:+74785928 | Msa0521830:CDS |
| TTTACAGGAGCTTGATAAGA+GGG | 0.537169 | 3_4:+74786596 | Msa0521830:CDS |
| TAAATGCTCAGTTCATCAGC+TGG | 0.537790 | 3_4:+74785768 | Msa0521830:CDS |
| TTGATAAGAGGGAGGACTAC+GGG | 0.539110 | 3_4:+74786607 | Msa0521830:CDS |
| CCGCACTTCTCCTCAACAGT+TGG | 0.540993 | 3_4:-74787554 | Msa0521840:three_prime_UTR |
| AGGAACTCCATAGATTCAGT+TGG | 0.556560 | 3_4:-74785853 | None:intergenic |
| CTTGATAAGAGGGAGGACTA+CGG | 0.557702 | 3_4:+74786606 | Msa0521830:CDS |
| TGCAATTGCAGCAGAAGCCA+TGG | 0.565370 | 3_4:-74786794 | None:intergenic |
| GGAATTCTGGAGAAAGTGCT+TGG | 0.567645 | 3_4:-74786439 | None:intergenic |
| TATGTTTAGCAGCTATCTAA+CGG | 0.568335 | 3_4:+74786219 | Msa0521830:intron |
| TGGTATAAAACTGGTCAGAA+GGG | 0.573962 | 3_4:-74785972 | None:intergenic |
| GGTTGAAAGATCAGAAGGAG+AGG | 0.575835 | 3_4:+74786635 | Msa0521830:CDS |
| TAAAAGTTGAATATCAATGC+CGG | 0.583139 | 3_4:-74785947 | None:intergenic |
| TTCAGTATGTTACATTGGCG+CGG | 0.587089 | 3_4:-74788280 | Msa0521840:three_prime_UTR |
| ATTGCAGCAGAAGCCATGGT+AGG | 0.594587 | 3_4:-74786790 | None:intergenic |
| TGTGCAGCGATATCCCAGCT+TGG | 0.596256 | 3_4:+74788117 | Msa0521830:CDS |
| TATCCCAGCTTGGCCCGGAA+GGG | 0.598830 | 3_4:+74788127 | Msa0521830:CDS |
| TTCAGTTGGGGTATCAGGTG+CGG | 0.602534 | 3_4:-74785839 | None:intergenic |
| AAATCAGGACTCATAATGCT+CGG | 0.604268 | 3_4:+74786668 | Msa0521830:CDS |
| TTGCAGCAGAAGCCATGGTA+GGG | 0.605912 | 3_4:-74786789 | None:intergenic |
| AAAATGGCAGATATAGTCAC+CGG | 0.606175 | 3_4:+74788092 | Msa0521830:CDS |
| GAGGGAGGACTACGGGTAGG+TGG | 0.615301 | 3_4:+74786614 | Msa0521830:CDS |
| AAGAGAAAGTAGCGAAACAA+AGG | 0.615309 | 3_4:+74786263 | Msa0521830:CDS |
| TGGGATATCGCTGCACACTC+CGG | 0.618172 | 3_4:-74788111 | Msa0521840:three_prime_UTR |
| AAAGACTCCATGATCTAGCA+AGG | 0.625812 | 3_4:-74785873 | None:intergenic |
| CTGGACTGTGTCTTTAGAGG+AGG | 0.632407 | 3_4:+74787608 | Msa0521830:CDS |
| TAGGTGGTTGAAAGATCAGA+AGG | 0.633447 | 3_4:+74786630 | Msa0521830:CDS |
| TCAAAACTTGCTGAGAAATG+GGG | 0.639012 | 3_4:+74786469 | Msa0521830:CDS |
| TACTACGATTCCAACTGTTG+AGG | 0.640288 | 3_4:+74787544 | Msa0521830:CDS |
| TAAGAGGGAGGACTACGGGT+AGG | 0.643903 | 3_4:+74786611 | Msa0521830:CDS |
| ACAGGAGCTTGATAAGAGGG+AGG | 0.655763 | 3_4:+74786599 | Msa0521830:CDS |
| AAGTTGAATATCAATGCCGG+TGG | 0.660607 | 3_4:-74785944 | None:intergenic |
| CAACCAAAAGAACCCTACCA+TGG | 0.662228 | 3_4:+74786777 | Msa0521830:CDS |
| AGATTAATAGAATTTGAATG+CGG | 0.671794 | 3_4:+74788203 | Msa0521830:CDS |
| GGAAGGGAAAAGGAAGACAA+CGG | 0.672432 | 3_4:+74788143 | Msa0521830:CDS |
| GAACTCCATAGATTCAGTTG+GGG | 0.682676 | 3_4:-74785851 | None:intergenic |
| AACACCAACTACAGATACTG+CGG | 0.695742 | 3_4:-74786698 | None:intergenic |
| CCAACTGTTGAGGAGAAGTG+CGG | 0.712451 | 3_4:+74787554 | Msa0521830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTTAGTATATATAAT+TGG | + | chr3_4:74786372-74786391 | Msa0521830:intron | 10.0% |
| !! | AAATTTATTGATATTTAAAC+TGG | + | chr3_4:74787193-74787212 | Msa0521830:intron | 10.0% |
| !! | ATAAAATACAATGAACTAAA+TGG | + | chr3_4:74787466-74787485 | Msa0521830:intron | 15.0% |
| !! | AATTAAACTGTTAGTAAACA+AGG | - | chr3_4:74787013-74787032 | None:intergenic | 20.0% |
| !!! | AATATACCAATTTTTGCTTT+TGG | + | chr3_4:74787142-74787161 | Msa0521830:intron | 20.0% |
| !! | CAAATACTCTACAAATTAAA+GGG | - | chr3_4:74787220-74787239 | None:intergenic | 20.0% |
| !! | TCAAATACTCTACAAATTAA+AGG | - | chr3_4:74787221-74787240 | None:intergenic | 20.0% |
| !! | ATTTATATAGCCATTAAAAC+TGG | - | chr3_4:74787309-74787328 | None:intergenic | 20.0% |
| !! | ATAAATTTAGTTAAGCTCAA+AGG | + | chr3_4:74787323-74787342 | Msa0521830:intron | 20.0% |
| !!! | TATGGACATTTAAAATAGTA+TGG | - | chr3_4:74787771-74787790 | Msa0521840:three_prime_UTR | 20.0% |
| !! | CAATATTAATTCAAATTTGC+AGG | + | chr3_4:74787823-74787842 | Msa0521830:CDS | 20.0% |
| !!! | AAGTTTTGTATACTGAAATT+TGG | - | chr3_4:74788026-74788045 | Msa0521840:intron | 20.0% |
| !! | AGATTAATAGAATTTGAATG+CGG | + | chr3_4:74788203-74788222 | Msa0521830:CDS | 20.0% |
| ! | TAAAAGTTGAATATCAATGC+CGG | - | chr3_4:74785950-74785969 | None:intergenic | 25.0% |
| ! | ATTTAAGAAAACGTTCTTAC+AGG | - | chr3_4:74786024-74786043 | None:intergenic | 25.0% |
| ! | TCTTAATATTGAAGAATCCT+AGG | - | chr3_4:74786134-74786153 | None:intergenic | 25.0% |
| ! | TAGGATTCTTCAATATTAAG+AGG | + | chr3_4:74786133-74786152 | Msa0521830:intron | 25.0% |
| !!! | GATAGCTTTAACTATGTTTT+TGG | + | chr3_4:74787047-74787066 | Msa0521830:intron | 25.0% |
| ! | CAAAAATTGGTATATTTGCA+GGG | - | chr3_4:74787138-74787157 | None:intergenic | 25.0% |
| ! | ATTAAGTATGAGCAATGTAA+TGG | + | chr3_4:74787365-74787384 | Msa0521830:intron | 25.0% |
| !! | CGTAAACTGATTTAAACATT+TGG | - | chr3_4:74787732-74787751 | Msa0521840:three_prime_UTR | 25.0% |
| !!! | CTATTTTAAATGTCCATAAC+AGG | + | chr3_4:74787773-74787792 | Msa0521830:intron | 25.0% |
| !!! | TGTGATTTGTTAATGAATGT+AGG | - | chr3_4:74787867-74787886 | Msa0521840:intron | 25.0% |
| !!! | AATATGCTTGCTTTTCATTT+TGG | - | chr3_4:74787970-74787989 | Msa0521840:intron | 25.0% |
| TAAAACCCTTGGTATAAAAC+TGG | - | chr3_4:74785984-74786003 | None:intergenic | 30.0% | |
| !!! | TTCCTGTTGCTTTTATGTAT+TGG | + | chr3_4:74786175-74786194 | Msa0521830:intron | 30.0% |
| AACCAATACATAAAAGCAAC+AGG | - | chr3_4:74786180-74786199 | None:intergenic | 30.0% | |
| TATGTTTAGCAGCTATCTAA+CGG | + | chr3_4:74786219-74786238 | Msa0521830:intron | 30.0% | |
| ACATGAGTAGTAAGTAAACT+AGG | - | chr3_4:74786291-74786310 | None:intergenic | 30.0% | |
| CTACTCATGTTAAACTTGTA+CGG | + | chr3_4:74786301-74786320 | Msa0521830:intron | 30.0% | |
| ATTGAGATTGCAGAAGATAT+GGG | + | chr3_4:74786847-74786866 | Msa0521830:intron | 30.0% | |
| ! | AGTCAATTGCTGTTATGATT+TGG | - | chr3_4:74786885-74786904 | None:intergenic | 30.0% |
| GCTATTAATGCAAAAACCAA+TGG | + | chr3_4:74786907-74786926 | Msa0521830:intron | 30.0% | |
| TAGAGTCATAATATCTCCAT+TGG | - | chr3_4:74786926-74786945 | None:intergenic | 30.0% | |
| GCAAAAATTGGTATATTTGC+AGG | - | chr3_4:74787139-74787158 | None:intergenic | 30.0% | |
| TAGAAATGAACTCAGTTTGT+AGG | - | chr3_4:74787411-74787430 | Msa0521840:three_prime_UTR | 30.0% | |
| TGAAGTCATTGTTACAAACA+TGG | - | chr3_4:74787679-74787698 | Msa0521840:three_prime_UTR | 30.0% | |
| TGTTACTGTAAGCAATGTTA+AGG | + | chr3_4:74788059-74788078 | Msa0521830:intron | 30.0% | |
| TTAAGGTATGGCCTATAAAA+TGG | + | chr3_4:74788076-74788095 | Msa0521830:intron | 30.0% | |
| !!! | GACTATATCTGCCATTTTAT+AGG | - | chr3_4:74788090-74788109 | Msa0521840:three_prime_UTR | 30.0% |
| TGGTATAAAACTGGTCAGAA+GGG | - | chr3_4:74785975-74785994 | None:intergenic | 35.0% | |
| TTGGTATAAAACTGGTCAGA+AGG | - | chr3_4:74785976-74785995 | None:intergenic | 35.0% | |
| !! | TTCTGACCAGTTTTATACCA+AGG | + | chr3_4:74785975-74785994 | Msa0521830:CDS | 35.0% |
| !! | TCTGACCAGTTTTATACCAA+GGG | + | chr3_4:74785976-74785995 | Msa0521830:CDS | 35.0% |
| ! | TCTTACAGGATCTTCTTTTG+AGG | - | chr3_4:74786010-74786029 | None:intergenic | 35.0% |
| TGTTGCATTGCATTGTGAAA+AGG | - | chr3_4:74786070-74786089 | None:intergenic | 35.0% | |
| ACTTCTATCTACAACGTACA+TGG | - | chr3_4:74786111-74786130 | None:intergenic | 35.0% | |
| CAGGAACACAAGACAATATT+AGG | - | chr3_4:74786161-74786180 | None:intergenic | 35.0% | |
| ! | TTTGTTTCGCTACTTTCTCT+TGG | - | chr3_4:74786264-74786283 | None:intergenic | 35.0% |
| AAGAGAAAGTAGCGAAACAA+AGG | + | chr3_4:74786263-74786282 | Msa0521830:CDS | 35.0% | |
| CATAGTAATCGTTCATATGC+AGG | + | chr3_4:74786400-74786419 | Msa0521830:intron | 35.0% | |
| !! | TTTTGACTGGAAAGGAATTC+TGG | - | chr3_4:74786455-74786474 | None:intergenic | 35.0% |
| !! | ATTTCTCAGCAAGTTTTGAC+TGG | - | chr3_4:74786468-74786487 | None:intergenic | 35.0% |
| !! | AGTCAAAACTTGCTGAGAAA+TGG | + | chr3_4:74786467-74786486 | Msa0521830:CDS | 35.0% |
| !! | GTCAAAACTTGCTGAGAAAT+GGG | + | chr3_4:74786468-74786487 | Msa0521830:CDS | 35.0% |
| !! | TCAAAACTTGCTGAGAAATG+GGG | + | chr3_4:74786469-74786488 | Msa0521830:CDS | 35.0% |
| ! | TTTTTGCTCATCAGCTTTAC+AGG | + | chr3_4:74786581-74786600 | Msa0521830:intron | 35.0% |
| TTTACAGGAGCTTGATAAGA+GGG | + | chr3_4:74786596-74786615 | Msa0521830:CDS | 35.0% | |
| AGAGGAAAAAACAGGAAATC+AGG | + | chr3_4:74786653-74786672 | Msa0521830:CDS | 35.0% | |
| AAATCAGGACTCATAATGCT+CGG | + | chr3_4:74786668-74786687 | Msa0521830:CDS | 35.0% | |
| CATTGAGATTGCAGAAGATA+TGG | + | chr3_4:74786846-74786865 | Msa0521830:intron | 35.0% | |
| GATATTATGACTCTAACAGC+CGG | + | chr3_4:74786931-74786950 | Msa0521830:intron | 35.0% | |
| CAACGACCAAAAGCAAAAAT+TGG | - | chr3_4:74787151-74787170 | None:intergenic | 35.0% | |
| ! | ATAGCCATTAAAACTGGTCT+GGG | - | chr3_4:74787303-74787322 | None:intergenic | 35.0% |
| TATAGCCATTAAAACTGGTC+TGG | - | chr3_4:74787304-74787323 | None:intergenic | 35.0% | |
| TGTCAAGATGTTTGCTTCTT+TGG | - | chr3_4:74787585-74787604 | Msa0521840:three_prime_UTR | 35.0% | |
| CTTCTCAAACGTACAAGAAA+AGG | + | chr3_4:74787635-74787654 | Msa0521830:CDS | 35.0% | |
| ACAAATCACACACGAGTTAT+TGG | + | chr3_4:74787877-74787896 | Msa0521830:intron | 35.0% | |
| CTATTCAACACAATGACTAC+AGG | + | chr3_4:74787938-74787957 | Msa0521830:intron | 35.0% | |
| ATGAAAAGCAAGCATATTGC+AGG | + | chr3_4:74787972-74787991 | Msa0521830:CDS | 35.0% | |
| CTGTAAGCAATGTTAAGGTA+TGG | + | chr3_4:74788064-74788083 | Msa0521830:intron | 35.0% | |
| AAAATGGCAGATATAGTCAC+CGG | + | chr3_4:74788092-74788111 | Msa0521830:CDS | 35.0% | |
| !! | GGCAAAAAGAGAGCATATTT+TGG | + | chr3_4:74788164-74788183 | Msa0521830:CDS | 35.0% |
| GTAAAGAAGACAAACAGTTC+TGG | + | chr3_4:74788228-74788247 | Msa0521830:CDS | 35.0% | |
| TAAATGCTCAGTTCATCAGC+TGG | + | chr3_4:74785768-74785787 | Msa0521830:CDS | 40.0% | |
| ! | ATAGATTCAGTTGGGGTATC+AGG | - | chr3_4:74785847-74785866 | None:intergenic | 40.0% |
| TGATACCCCAACTGAATCTA+TGG | + | chr3_4:74785846-74785865 | Msa0521830:CDS | 40.0% | |
| GAACTCCATAGATTCAGTTG+GGG | - | chr3_4:74785854-74785873 | None:intergenic | 40.0% | |
| GGAACTCCATAGATTCAGTT+GGG | - | chr3_4:74785855-74785874 | None:intergenic | 40.0% | |
| AGGAACTCCATAGATTCAGT+TGG | - | chr3_4:74785856-74785875 | None:intergenic | 40.0% | |
| AAAGACTCCATGATCTAGCA+AGG | - | chr3_4:74785876-74785895 | None:intergenic | 40.0% | |
| AAGTTGAATATCAATGCCGG+TGG | - | chr3_4:74785947-74785966 | None:intergenic | 40.0% | |
| !!! | TTTTGAGGCAGTAAAACCCT+TGG | - | chr3_4:74785995-74786014 | None:intergenic | 40.0% |
| ACGTTGTAGATAGAAGTCCT+AGG | + | chr3_4:74786114-74786133 | Msa0521830:intron | 40.0% | |
| !!! | TCAGCAAGTTTTGACTGGAA+AGG | - | chr3_4:74786463-74786482 | None:intergenic | 40.0% |
| CTTTACAGGAGCTTGATAAG+AGG | + | chr3_4:74786595-74786614 | Msa0521830:CDS | 40.0% | |
| TAGGTGGTTGAAAGATCAGA+AGG | + | chr3_4:74786630-74786649 | Msa0521830:CDS | 40.0% | |
| TCAGAAGGAGAGGAAAAAAC+AGG | + | chr3_4:74786645-74786664 | Msa0521830:CDS | 40.0% | |
| AACACCAACTACAGATACTG+CGG | - | chr3_4:74786701-74786720 | None:intergenic | 40.0% | |
| ! | TTGGTTGGGATTAGGCTTTT+CGG | - | chr3_4:74786764-74786783 | None:intergenic | 40.0% |
| !! | ATGGTAGGGTTCTTTTGGTT+GGG | - | chr3_4:74786778-74786797 | None:intergenic | 40.0% |
| !! | ACTTTAGAGTCTGATACCTG+TGG | - | chr3_4:74786962-74786981 | None:intergenic | 40.0% |
| !! | CTGGGGTTTGACTTTTACAT+TGG | - | chr3_4:74787285-74787304 | None:intergenic | 40.0% |
| !! | AAACCCCAGACCAGTTTTAA+TGG | + | chr3_4:74787296-74787315 | Msa0521830:intron | 40.0% |
| ! | TAGCCATTAAAACTGGTCTG+GGG | - | chr3_4:74787302-74787321 | None:intergenic | 40.0% |
| TACTACGATTCCAACTGTTG+AGG | + | chr3_4:74787544-74787563 | Msa0521830:CDS | 40.0% | |
| ! | AGACAAACAGTTCTGGTTAG+AGG | + | chr3_4:74788235-74788254 | Msa0521830:CDS | 40.0% |
| ! | GACAAACAGTTCTGGTTAGA+GGG | + | chr3_4:74788236-74788255 | Msa0521830:CDS | 40.0% |
| TGGAGTTCCTTGCTAGATCA+TGG | + | chr3_4:74785866-74785885 | Msa0521830:CDS | 45.0% | |
| TTGAATATCAATGCCGGTGG+AGG | - | chr3_4:74785944-74785963 | None:intergenic | 45.0% | |
| !! | GGAATTCTGGAGAAAGTGCT+TGG | - | chr3_4:74786442-74786461 | None:intergenic | 45.0% |
| CTTGATAAGAGGGAGGACTA+CGG | + | chr3_4:74786606-74786625 | Msa0521830:CDS | 45.0% | |
| TTGATAAGAGGGAGGACTAC+GGG | + | chr3_4:74786607-74786626 | Msa0521830:CDS | 45.0% | |
| GGTTGAAAGATCAGAAGGAG+AGG | + | chr3_4:74786635-74786654 | Msa0521830:CDS | 45.0% | |
| !! | GGGTTCTTTTGGTTGGGATT+AGG | - | chr3_4:74786772-74786791 | None:intergenic | 45.0% |
| ! | CATGGTAGGGTTCTTTTGGT+TGG | - | chr3_4:74786779-74786798 | None:intergenic | 45.0% |
| CAACCAAAAGAACCCTACCA+TGG | + | chr3_4:74786777-74786796 | Msa0521830:CDS | 45.0% | |
| ! | AAGCCATGGTAGGGTTCTTT+TGG | - | chr3_4:74786783-74786802 | None:intergenic | 45.0% |
| TGCAATCTCAATGCAGTGAG+AGG | - | chr3_4:74786839-74786858 | None:intergenic | 45.0% | |
| AGAAGATATGGGAGCTGAAC+AGG | + | chr3_4:74786858-74786877 | Msa0521830:intron | 45.0% | |
| AACTAAATGGCAGCATTGCG+AGG | + | chr3_4:74787479-74787498 | Msa0521830:intron | 45.0% | |
| AGCAAACATCTTGACAGCAC+TGG | + | chr3_4:74787589-74787608 | Msa0521830:CDS | 45.0% | |
| CCAGTGAAGAACTCCTGTTA+TGG | - | chr3_4:74787789-74787808 | Msa0521840:three_prime_UTR | 45.0% | |
| CCATAACAGGAGTTCTTCAC+TGG | + | chr3_4:74787786-74787805 | Msa0521830:intron | 45.0% | |
| ! | TTGTCTTCCTTTTCCCTTCC+GGG | - | chr3_4:74788143-74788162 | Msa0521840:three_prime_UTR | 45.0% |
| ! | GTTGTCTTCCTTTTCCCTTC+CGG | - | chr3_4:74788144-74788163 | Msa0521840:three_prime_UTR | 45.0% |
| GGAAGGGAAAAGGAAGACAA+CGG | + | chr3_4:74788143-74788162 | Msa0521830:CDS | 45.0% | |
| ! | TTCAGTTGGGGTATCAGGTG+CGG | - | chr3_4:74785842-74785861 | None:intergenic | 50.0% |
| !! | ATTGGTGCTGTGCAGTGCTT+TGG | - | chr3_4:74785914-74785933 | None:intergenic | 50.0% |
| ACCAATTCTACGACCTCCAC+CGG | + | chr3_4:74785928-74785947 | Msa0521830:CDS | 50.0% | |
| ACAGGAGCTTGATAAGAGGG+AGG | + | chr3_4:74786599-74786618 | Msa0521830:CDS | 50.0% | |
| TTGCAGCAGAAGCCATGGTA+GGG | - | chr3_4:74786792-74786811 | None:intergenic | 50.0% | |
| ATTGCAGCAGAAGCCATGGT+AGG | - | chr3_4:74786793-74786812 | None:intergenic | 50.0% | |
| TGCAATTGCAGCAGAAGCCA+TGG | - | chr3_4:74786797-74786816 | None:intergenic | 50.0% | |
| !! | TGCTACTTTGAAGGCACGTC+TGG | + | chr3_4:74787505-74787524 | Msa0521830:intron | 50.0% |
| ! | TTGAAGGCACGTCTGGAGAA+AGG | + | chr3_4:74787512-74787531 | Msa0521830:intron | 50.0% |
| ! | TGAAGGCACGTCTGGAGAAA+GGG | + | chr3_4:74787513-74787532 | Msa0521830:intron | 50.0% |
| CCAACTGTTGAGGAGAAGTG+CGG | + | chr3_4:74787554-74787573 | Msa0521830:CDS | 50.0% | |
| GCACTGGACTGTGTCTTTAG+AGG | + | chr3_4:74787605-74787624 | Msa0521830:CDS | 50.0% | |
| ! | CTGGACTGTGTCTTTAGAGG+AGG | + | chr3_4:74787608-74787627 | Msa0521830:CDS | 50.0% |
| CGCGGCAATTCAACATGTAC+TGG | - | chr3_4:74788265-74788284 | Msa0521840:three_prime_UTR | 50.0% | |
| TAAGAGGGAGGACTACGGGT+AGG | + | chr3_4:74786611-74786630 | Msa0521830:CDS | 55.0% | |
| CACGCCGCAGTATCTGTAGT+TGG | + | chr3_4:74786694-74786713 | Msa0521830:CDS | 55.0% | |
| AGCTGCAACTGCTGCAACAG+CGG | - | chr3_4:74786728-74786747 | None:intergenic | 55.0% | |
| TCTGATACCTGTGGCTGCTC+CGG | - | chr3_4:74786953-74786972 | None:intergenic | 55.0% | |
| !! | GCGAGGAGCTGCTACTTTGA+AGG | + | chr3_4:74787496-74787515 | Msa0521830:intron | 55.0% |
| CCGCACTTCTCCTCAACAGT+TGG | - | chr3_4:74787557-74787576 | Msa0521840:three_prime_UTR | 55.0% | |
| TGGGATATCGCTGCACACTC+CGG | - | chr3_4:74788114-74788133 | Msa0521840:three_prime_UTR | 55.0% | |
| TGTGCAGCGATATCCCAGCT+TGG | + | chr3_4:74788117-74788136 | Msa0521830:CDS | 55.0% | |
| GCCGGTGGAGGTCGTAGAAT+TGG | - | chr3_4:74785932-74785951 | None:intergenic | 60.0% | |
| GCACGTCTGGAGAAAGGGCT+TGG | + | chr3_4:74787518-74787537 | Msa0521830:CDS | 60.0% | |
| AGCGATATCCCAGCTTGGCC+CGG | + | chr3_4:74788122-74788141 | Msa0521830:CDS | 60.0% | |
| ATATCCCAGCTTGGCCCGGA+AGG | + | chr3_4:74788126-74788145 | Msa0521830:CDS | 60.0% | |
| TATCCCAGCTTGGCCCGGAA+GGG | + | chr3_4:74788127-74788146 | Msa0521830:CDS | 60.0% | |
| TTTCCCTTCCGGGCCAAGCT+GGG | - | chr3_4:74788133-74788152 | Msa0521840:three_prime_UTR | 60.0% | |
| ! | TTTTCCCTTCCGGGCCAAGC+TGG | - | chr3_4:74788134-74788153 | Msa0521840:three_prime_UTR | 60.0% |
| AGCTTGGCCCGGAAGGGAAA+AGG | + | chr3_4:74788133-74788152 | Msa0521830:CDS | 60.0% | |
| GGTGCGGCGCAAGATGATGC+AGG | - | chr3_4:74785826-74785845 | None:intergenic | 65.0% | |
| GAGGGAGGACTACGGGTAGG+TGG | + | chr3_4:74786614-74786633 | Msa0521830:CDS | 65.0% | |
| CTAACAGCCGGAGCAGCCAC+AGG | + | chr3_4:74786943-74786962 | Msa0521830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 74785748 | 74788301 | 74785748 | ID=Msa0521830;Name=Msa0521830 |
| chr3_4 | mRNA | 74785748 | 74788301 | 74785748 | ID=Msa0521830-mRNA-1;Parent=Msa0521830;Name=Msa0521830-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.28|0.12|1|1|1|8|0|367 |
| chr3_4 | exon | 74785748 | 74786023 | 74785748 | ID=Msa0521830-mRNA-1:exon:21280;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74786231 | 74786284 | 74786231 | ID=Msa0521830-mRNA-1:exon:21281;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74786422 | 74786490 | 74786422 | ID=Msa0521830-mRNA-1:exon:21282;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74786595 | 74786831 | 74786595 | ID=Msa0521830-mRNA-1:exon:21283;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74787518 | 74787656 | 74787518 | ID=Msa0521830-mRNA-1:exon:21284;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74787795 | 74787844 | 74787795 | ID=Msa0521830-mRNA-1:exon:21285;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74787960 | 74788017 | 74787960 | ID=Msa0521830-mRNA-1:exon:21286;Parent=Msa0521830-mRNA-1 |
| chr3_4 | exon | 74788081 | 74788301 | 74788081 | ID=Msa0521830-mRNA-1:exon:21287;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74785748 | 74786023 | 74785748 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74786231 | 74786284 | 74786231 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74786422 | 74786490 | 74786422 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74786595 | 74786831 | 74786595 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74787518 | 74787656 | 74787518 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74787795 | 74787844 | 74787795 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74787960 | 74788017 | 74787960 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| chr3_4 | CDS | 74788081 | 74788301 | 74788081 | ID=Msa0521830-mRNA-1:cds;Parent=Msa0521830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
