Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500720 | XP_024633847.1 | 97.783 | 406 | 9 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500720 | G7J6B6 | 97.783 | 406 | 9 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa0500720 | -0.814240 | 1.703788e-51 | -8.615850e-47 |
| Msa0015460 | Msa0500720 | 0.808029 | 3.784905e-50 | -8.615850e-47 |
| Msa0043730 | Msa0500720 | 0.812488 | 4.133618e-51 | -8.615850e-47 |
| Msa0052030 | Msa0500720 | 0.809783 | 1.595318e-50 | -8.615850e-47 |
| Msa0061150 | Msa0500720 | 0.829718 | 4.400873e-55 | -8.615850e-47 |
| Msa0091570 | Msa0500720 | 0.805323 | 1.410905e-49 | -8.615850e-47 |
| Msa0096940 | Msa0500720 | -0.827572 | 1.453194e-54 | -8.615850e-47 |
| Msa0105700 | Msa0500720 | 0.818892 | 1.546510e-52 | -8.615850e-47 |
| Msa0107280 | Msa0500720 | 0.803151 | 3.997794e-49 | -8.615850e-47 |
| Msa0109590 | Msa0500720 | 0.801318 | 9.528840e-49 | -8.615850e-47 |
| Msa0115270 | Msa0500720 | 0.803607 | 3.216021e-49 | -8.615850e-47 |
| Msa0115390 | Msa0500720 | 0.802574 | 5.259830e-49 | -8.615850e-47 |
| Msa0118540 | Msa0500720 | 0.815466 | 9.114619e-52 | -8.615850e-47 |
| Msa0129190 | Msa0500720 | -0.810182 | 1.308827e-50 | -8.615850e-47 |
| Msa0130520 | Msa0500720 | 0.812327 | 4.482776e-51 | -8.615850e-47 |
| Msa0140390 | Msa0500720 | 0.822477 | 2.319859e-53 | -8.615850e-47 |
| Msa0144970 | Msa0500720 | -0.825005 | 5.934404e-54 | -8.615850e-47 |
| Msa0148120 | Msa0500720 | 0.805469 | 1.315087e-49 | -8.615850e-47 |
| Msa0152170 | Msa0500720 | 0.823186 | 1.586076e-53 | -8.615850e-47 |
| Msa0172780 | Msa0500720 | 0.802308 | 5.965577e-49 | -8.615850e-47 |
| Msa0176330 | Msa0500720 | 0.802819 | 4.680490e-49 | -8.615850e-47 |
| Msa0178990 | Msa0500720 | 0.807297 | 5.415356e-50 | -8.615850e-47 |
| Msa0183590 | Msa0500720 | 0.801232 | 9.921064e-49 | -8.615850e-47 |
| Msa0186310 | Msa0500720 | 0.817417 | 3.334509e-52 | -8.615850e-47 |
| Msa0226890 | Msa0500720 | 0.813102 | 3.034101e-51 | -8.615850e-47 |
| Msa0365490 | Msa0500720 | 0.801760 | 7.734550e-49 | -8.615850e-47 |
| Msa0372340 | Msa0500720 | 0.833719 | 4.538756e-56 | -8.615850e-47 |
| Msa0377530 | Msa0500720 | 0.822172 | 2.730350e-53 | -8.615850e-47 |
| Msa0380040 | Msa0500720 | 0.853782 | 1.902964e-61 | -8.615850e-47 |
| Msa0384540 | Msa0500720 | 0.809089 | 2.248322e-50 | -8.615850e-47 |
| Msa0388840 | Msa0500720 | 0.802787 | 4.753931e-49 | -8.615850e-47 |
| Msa0389810 | Msa0500720 | 0.845956 | 2.937622e-59 | -8.615850e-47 |
| Msa0394340 | Msa0500720 | 0.844656 | 6.604420e-59 | -8.615850e-47 |
| Msa0404000 | Msa0500720 | 0.800437 | 1.442199e-48 | -8.615850e-47 |
| Msa0404030 | Msa0500720 | 0.816563 | 5.184390e-52 | -8.615850e-47 |
| Msa0429290 | Msa0500720 | 0.838147 | 3.417322e-57 | -8.615850e-47 |
| Msa0429950 | Msa0500720 | 0.958037 | 6.316660e-116 | -8.615850e-47 |
| Msa0433530 | Msa0500720 | 0.816720 | 4.781187e-52 | -8.615850e-47 |
| Msa0436190 | Msa0500720 | 0.818200 | 2.219217e-52 | -8.615850e-47 |
| Msa0442200 | Msa0500720 | 0.827203 | 1.781533e-54 | -8.615850e-47 |
| Msa0442850 | Msa0500720 | 0.804439 | 2.159194e-49 | -8.615850e-47 |
| Msa0468130 | Msa0500720 | 0.846721 | 1.817654e-59 | -8.615850e-47 |
| Msa0473240 | Msa0500720 | 0.826007 | 3.435664e-54 | -8.615850e-47 |
| Msa0475240 | Msa0500720 | 0.801062 | 1.074697e-48 | -8.615850e-47 |
| Msa0475580 | Msa0500720 | 0.839890 | 1.208512e-57 | -8.615850e-47 |
| Msa0477260 | Msa0500720 | 0.821891 | 3.171759e-53 | -8.615850e-47 |
| Msa0244270 | Msa0500720 | 0.803041 | 4.213100e-49 | -8.615850e-47 |
| Msa0256330 | Msa0500720 | 0.810414 | 1.166689e-50 | -8.615850e-47 |
| Msa0295330 | Msa0500720 | 0.814027 | 1.899059e-51 | -8.615850e-47 |
| Msa0306710 | Msa0500720 | 0.803830 | 2.890153e-49 | -8.615850e-47 |
| Msa0307470 | Msa0500720 | 0.812353 | 4.424971e-51 | -8.615850e-47 |
| Msa0340690 | Msa0500720 | 0.805826 | 1.106765e-49 | -8.615850e-47 |
| Msa0340710 | Msa0500720 | 0.812573 | 3.961634e-51 | -8.615850e-47 |
| Msa0344830 | Msa0500720 | 0.826881 | 2.126212e-54 | -8.615850e-47 |
| Msa0347360 | Msa0500720 | 0.809085 | 2.252759e-50 | -8.615850e-47 |
| Msa0347610 | Msa0500720 | 0.842356 | 2.718069e-58 | -8.615850e-47 |
| Msa0358170 | Msa0500720 | 0.809656 | 1.699003e-50 | -8.615850e-47 |
| Msa0488270 | Msa0500720 | 0.812031 | 5.201329e-51 | -8.615850e-47 |
| Msa0489610 | Msa0500720 | 0.856433 | 3.227509e-62 | -8.615850e-47 |
| Msa0500720 | Msa0517490 | 0.837159 | 6.127668e-57 | -8.615850e-47 |
| Msa0500720 | Msa0519220 | 0.850249 | 1.918180e-60 | -8.615850e-47 |
| Msa0500720 | Msa0524600 | 0.818181 | 2.241167e-52 | -8.615850e-47 |
| Msa0500720 | Msa0526410 | 0.819721 | 1.000740e-52 | -8.615850e-47 |
| Msa0500720 | Msa0530850 | 0.803446 | 3.472713e-49 | -8.615850e-47 |
| Msa0500720 | Msa0532540 | 0.812272 | 4.609406e-51 | -8.615850e-47 |
| Msa0500720 | Msa0534410 | 0.808576 | 2.893386e-50 | -8.615850e-47 |
| Msa0500720 | Msa0540070 | 0.804263 | 2.349607e-49 | -8.615850e-47 |
| Msa0500720 | Msa0545080 | 0.835043 | 2.111384e-56 | -8.615850e-47 |
| Msa0500720 | Msa0553220 | -0.824579 | 7.477477e-54 | -8.615850e-47 |
| Msa0500720 | Msa0562440 | 0.841173 | 5.579910e-58 | -8.615850e-47 |
| Msa0500720 | Msa0570330 | 0.806675 | 7.330238e-50 | -8.615850e-47 |
| Msa0500720 | Msa0577120 | 0.806746 | 7.081191e-50 | -8.615850e-47 |
| Msa0500720 | Msa0585900 | 0.809860 | 1.535751e-50 | -8.615850e-47 |
| Msa0500720 | Msa0587030 | 0.808302 | 3.311247e-50 | -8.615850e-47 |
| Msa0500720 | Msa0588240 | 0.812729 | 3.662412e-51 | -8.615850e-47 |
| Msa0500720 | Msa0589390 | 0.818958 | 1.493618e-52 | -8.615850e-47 |
| Msa0500720 | Msa0590650 | 0.810322 | 1.220997e-50 | -8.615850e-47 |
| Msa0500720 | Msa0591770 | 0.805952 | 1.041103e-49 | -8.615850e-47 |
| Msa0500720 | Msa0626850 | 0.801578 | 8.429888e-49 | -8.615850e-47 |
| Msa0500720 | Msa0629650 | 0.811570 | 6.553104e-51 | -8.615850e-47 |
| Msa0500720 | Msa0638280 | 0.812871 | 3.408288e-51 | -8.615850e-47 |
| Msa0500720 | Msa0641670 | 0.804419 | 2.179626e-49 | -8.615850e-47 |
| Msa0500720 | Msa0650190 | 0.805520 | 1.283247e-49 | -8.615850e-47 |
| Msa0500720 | Msa0654010 | 0.803236 | 3.838581e-49 | -8.615850e-47 |
| Msa0500720 | Msa0660300 | 0.830433 | 2.944974e-55 | -8.615850e-47 |
| Msa0500720 | Msa0661710 | 0.820034 | 8.490033e-53 | -8.615850e-47 |
| Msa0500720 | Msa0664970 | 0.833646 | 4.732417e-56 | -8.615850e-47 |
| Msa0500720 | Msa0673470 | 0.802479 | 5.501619e-49 | -8.615850e-47 |
| Msa0500720 | Msa0692110 | 0.840276 | 9.587572e-58 | -8.615850e-47 |
| Msa0500720 | Msa0696420 | 0.823451 | 1.375746e-53 | -8.615850e-47 |
| Msa0500720 | Msa0704730 | 0.805542 | 1.269632e-49 | -8.615850e-47 |
| Msa0500720 | Msa0711490 | 0.800039 | 1.737836e-48 | -8.615850e-47 |
| Msa0500720 | Msa0722920 | 0.807682 | 4.485962e-50 | -8.615850e-47 |
| Msa0500720 | Msa0723110 | 0.803654 | 3.144919e-49 | -8.615850e-47 |
| Msa0500720 | Msa0723130 | 0.850937 | 1.229018e-60 | -8.615850e-47 |
| Msa0500720 | Msa0743260 | 0.822487 | 2.307843e-53 | -8.615850e-47 |
| Msa0500720 | Msa0747260 | 0.812663 | 3.786375e-51 | -8.615850e-47 |
| Msa0500720 | Msa0748070 | 0.802754 | 4.828510e-49 | -8.615850e-47 |
| Msa0500720 | Msa0766310 | 0.801414 | 9.104691e-49 | -8.615850e-47 |
| Msa0500720 | Msa0775260 | 0.806279 | 8.885096e-50 | -8.615850e-47 |
| Msa0500720 | Msa0782490 | 0.803850 | 2.863784e-49 | -8.615850e-47 |
| Msa0500720 | Msa0784860 | 0.829635 | 4.609484e-55 | -8.615850e-47 |
| Msa0500720 | Msa0792090 | 0.814710 | 1.341240e-51 | -8.615850e-47 |
| Msa0500720 | Msa0793380 | 0.814408 | 1.564442e-51 | -8.615850e-47 |
| Msa0500720 | Msa0804230 | 0.803545 | 3.312615e-49 | -8.615850e-47 |
| Msa0500720 | Msa0870150 | 0.828160 | 1.049249e-54 | -8.615850e-47 |
| Msa0500720 | Msa0874500 | 0.803770 | 2.974634e-49 | -8.615850e-47 |
| Msa0500720 | Msa0874570 | 0.807851 | 4.131172e-50 | -8.615850e-47 |
| Msa0500720 | Msa0874670 | 0.816014 | 6.878939e-52 | -8.615850e-47 |
| Msa0500720 | Msa0935850 | 0.872441 | 3.173055e-67 | -8.615850e-47 |
| Msa0500720 | Msa0937330 | 0.845224 | 4.639474e-59 | -8.615850e-47 |
| Msa0500720 | Msa0944550 | 0.814395 | 1.574647e-51 | -8.615850e-47 |
| Msa0500720 | Msa0951400 | 0.808660 | 2.777512e-50 | -8.615850e-47 |
| Msa0500720 | Msa0974630 | 0.835783 | 1.372048e-56 | -8.615850e-47 |
| Msa0500720 | Msa0976250 | 0.819955 | 8.847223e-53 | -8.615850e-47 |
| Msa0500720 | Msa0982270 | 0.841732 | 3.975776e-58 | -8.615850e-47 |
| Msa0500720 | Msa0992490 | -0.817142 | 3.844214e-52 | -8.615850e-47 |
| Msa0500720 | Msa0996170 | 0.811953 | 5.409429e-51 | -8.615850e-47 |
| Msa0500720 | Msa1001580 | 0.806774 | 6.986051e-50 | -8.615850e-47 |
| Msa0500720 | Msa1012660 | 0.812403 | 4.314047e-51 | -8.615850e-47 |
| Msa0500720 | Msa1012830 | 0.849026 | 4.210122e-60 | -8.615850e-47 |
| Msa0500720 | Msa1023180 | 0.813680 | 2.264629e-51 | -8.615850e-47 |
| Msa0500720 | Msa1026760 | 0.819210 | 1.308976e-52 | -8.615850e-47 |
| Msa0500720 | Msa1026790 | 0.823056 | 1.700555e-53 | -8.615850e-47 |
| Msa0500720 | Msa1029080 | -0.820073 | 8.317123e-53 | -8.615850e-47 |
| Msa0500720 | Msa1037420 | 0.818568 | 1.831854e-52 | -8.615850e-47 |
| Msa0500720 | Msa1043050 | 0.817073 | 3.984527e-52 | -8.615850e-47 |
| Msa0500720 | Msa1047400 | 0.812749 | 3.624517e-51 | -8.615850e-47 |
| Msa0500720 | Msa1077670 | 0.805973 | 1.030583e-49 | -8.615850e-47 |
| Msa0500720 | Msa1085920 | 0.826486 | 2.642430e-54 | -8.615850e-47 |
| Msa0500720 | Msa1094430 | 0.821798 | 3.332818e-53 | -8.615850e-47 |
| Msa0500720 | Msa1095480 | 0.811302 | 7.492741e-51 | -8.615850e-47 |
| Msa0500720 | Msa1109570 | 0.811848 | 5.700287e-51 | -8.615850e-47 |
| Msa0500720 | Msa1136540 | 0.806584 | 7.662435e-50 | -8.615850e-47 |
| Msa0500720 | Msa1150710 | 0.808434 | 3.103041e-50 | -8.615850e-47 |
| Msa0500720 | Msa1156170 | -0.807141 | 5.844005e-50 | -8.615850e-47 |
| Msa0500720 | Msa1171870 | 0.808832 | 2.550946e-50 | -8.615850e-47 |
| Msa0500720 | Msa1172400 | 0.802910 | 4.482915e-49 | -8.615850e-47 |
| Msa0500720 | Msa1211000 | 0.816167 | 6.357742e-52 | -8.615850e-47 |
| Msa0500720 | Msa1217430 | -0.810211 | 1.290141e-50 | -8.615850e-47 |
| Msa0500720 | Msa1217830 | 0.803395 | 3.558253e-49 | -8.615850e-47 |
| Msa0500720 | Msa1233890 | 0.800225 | 1.592643e-48 | -8.615850e-47 |
| Msa0500720 | Msa1259400 | 0.806916 | 6.518517e-50 | -8.615850e-47 |
| Msa0500720 | Msa1267260 | 0.807054 | 6.096870e-50 | -8.615850e-47 |
| Msa0500720 | Msa1271210 | 0.814178 | 1.758626e-51 | -8.615850e-47 |
| Msa0500720 | Msa1272570 | 0.808082 | 3.688012e-50 | -8.615850e-47 |
| Msa0500720 | Msa1276440 | 0.815137 | 1.078241e-51 | -8.615850e-47 |
| Msa0500720 | Msa1300350 | -0.806962 | 6.376165e-50 | -8.615850e-47 |
| Msa0500720 | Msa1306430 | 0.808587 | 2.879044e-50 | -8.615850e-47 |
| Msa0500720 | Msa1306750 | 0.835529 | 1.591615e-56 | -8.615850e-47 |
| Msa0500720 | Msa1306760 | 0.800936 | 1.140433e-48 | -8.615850e-47 |
| Msa0500720 | Msa1307740 | 0.845948 | 2.953524e-59 | -8.615850e-47 |
| Msa0500720 | Msa1315110 | 0.805137 | 1.543539e-49 | -8.615850e-47 |
| Msa0500720 | Msa1348600 | 0.829361 | 5.373440e-55 | -8.615850e-47 |
| Msa0500720 | Msa1348950 | 0.808538 | 2.948412e-50 | -8.615850e-47 |
| Msa0500720 | Msa1359630 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0500720 | Msa1362880 | 0.818040 | 2.412074e-52 | -8.615850e-47 |
| Msa0500720 | Msa1369530 | 0.815021 | 1.144316e-51 | -8.615850e-47 |
| Msa0500720 | Msa1396830 | 0.803968 | 2.705470e-49 | -8.615850e-47 |
| Msa0500720 | Msa1419960 | 0.801736 | 7.822919e-49 | -8.615850e-47 |
| Msa0500720 | Msa1427230 | 0.804063 | 2.585973e-49 | -8.615850e-47 |
| Msa0500720 | Msa1438700 | 0.821360 | 4.209395e-53 | -8.615850e-47 |
| Msa0500720 | Msa1448630 | 0.816458 | 5.473047e-52 | -8.615850e-47 |
| Msa0500720 | Msa1450180 | 0.811084 | 8.355333e-51 | -8.615850e-47 |
| Msa0500720 | Msa1451620 | -0.803251 | 3.810414e-49 | -8.615850e-47 |
| Msa0500720 | Msa1452470 | 0.824666 | 7.133223e-54 | -8.615850e-47 |
| Msa0500720 | Msa1455490 | 0.812602 | 3.903414e-51 | -8.615850e-47 |
| Msa0500720 | Msa1460830 | 0.804014 | 2.646730e-49 | -8.615850e-47 |
| Msa0500720 | Msa1465960 | 0.839811 | 1.267315e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500720 | MtrunA17_Chr3g0133761 | 97.783 | 406 | 9 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Msa0500720 | MtrunA17_Chr4g0045091 | 48.276 | 406 | 200 | 6 | 5 | 406 | 11 | 410 | 1.38e-127 | 374 |
| Msa0500720 | MtrunA17_Chr5g0404441 | 23.022 | 278 | 176 | 6 | 24 | 271 | 139 | 408 | 5.43e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500720 | AT5G44250.1 | 54.479 | 413 | 171 | 7 | 1 | 406 | 1 | 403 | 5.92e-154 | 441 |
| Msa0500720 | AT2G15695.1 | 46.588 | 425 | 196 | 9 | 5 | 406 | 4 | 420 | 4.17e-130 | 381 |
| Msa0500720 | AT5G44250.2 | 52.244 | 312 | 132 | 8 | 102 | 406 | 1 | 302 | 1.04e-103 | 309 |
Find 109 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTAAAGACTGTATTTC+TGG | 0.115235 | 3_4:+41286261 | Msa0500720:CDS |
| CTTAACCCAACCATTATTTA+AGG | 0.118119 | 3_4:+41283295 | Msa0500720:five_prime_UTR |
| GTCGTTTGGCCTCTTATTTC+AGG | 0.166399 | 3_4:-41287526 | None:intergenic |
| TTTCCTTTGTTCCAGATAAT+TGG | 0.211588 | 3_4:+41285702 | Msa0500720:intron |
| GCAAGAATTGTGGCTTTATC+AGG | 0.230117 | 3_4:-41284896 | None:intergenic |
| TGCAAAAGCTTGTATGTTAA+AGG | 0.287646 | 3_4:+41285580 | Msa0500720:CDS |
| ATCCACCAAGATTTGCTTCA+TGG | 0.298508 | 3_4:+41286370 | Msa0500720:CDS |
| AACTGCCTTGCCAAGGATTT+CGG | 0.314879 | 3_4:-41287038 | None:intergenic |
| AAGATTTGAAGACGAGATAC+TGG | 0.321454 | 3_4:+41287084 | Msa0500720:CDS |
| GGTTTGGTGGTAGATATTAT+TGG | 0.332978 | 3_4:+41283551 | Msa0500720:CDS |
| AACAACCTCAACTAGTTTCC+AGG | 0.333050 | 3_4:+41287165 | Msa0500720:CDS |
| TTGTATGTTAAAGGTTCTTC+AGG | 0.335530 | 3_4:+41285589 | Msa0500720:CDS |
| GTTTGGTGGTAGATATTATT+GGG | 0.338411 | 3_4:+41283552 | Msa0500720:CDS |
| ATATGCAGGTGCTGAAAATT+AGG | 0.346502 | 3_4:+41285522 | Msa0500720:intron |
| TTTATGTGGAAAATCGTATA+GGG | 0.346874 | 3_4:-41283438 | None:intergenic |
| TCCCAATCCTCGACTGTCTT+GGG | 0.350284 | 3_4:-41287361 | None:intergenic |
| TTGAAAATTTATTAAATGTT+CGG | 0.353515 | 3_4:+41283484 | Msa0500720:five_prime_UTR |
| ATCAACGCAAATGGGGTTCT+TGG | 0.367337 | 3_4:+41287313 | Msa0500720:CDS |
| ATCTCTACTCTTCTCTTGGT+TGG | 0.375249 | 3_4:+41283668 | Msa0500720:CDS |
| CGTCCGAGCATCAACGCAAA+TGG | 0.384206 | 3_4:+41287304 | Msa0500720:CDS |
| CAAGAAACAACCTTAAATAA+TGG | 0.385390 | 3_4:-41283305 | None:intergenic |
| ATTCAAATCTGTTGAGGAAA+AGG | 0.398136 | 3_4:-41286425 | None:intergenic |
| GTCCGAGCATCAACGCAAAT+GGG | 0.398716 | 3_4:+41287305 | Msa0500720:CDS |
| GGAGTGTGAAACACATAATA+TGG | 0.404992 | 3_4:+41285728 | Msa0500720:CDS |
| GTGGATCTCTACTCTTCTCT+TGG | 0.413753 | 3_4:+41283664 | Msa0500720:CDS |
| CCCCAAGACAGTCGAGGATT+GGG | 0.422191 | 3_4:+41287360 | Msa0500720:CDS |
| GAGGGAATTTACAAGTCGTT+TGG | 0.422916 | 3_4:-41287540 | None:intergenic |
| AACAACCTTAAATAATGGTT+GGG | 0.434124 | 3_4:-41283300 | None:intergenic |
| AAATCACTAGTAAAATCAAC+TGG | 0.445291 | 3_4:-41286303 | None:intergenic |
| CCTTTGTTCCAGATAATTGG+TGG | 0.445347 | 3_4:+41285705 | Msa0500720:intron |
| ATCCCAATCCTCGACTGTCT+TGG | 0.451738 | 3_4:-41287362 | None:intergenic |
| TCCCCAAGACAGTCGAGGAT+TGG | 0.456587 | 3_4:+41287359 | Msa0500720:CDS |
| TGTACAATTCAAGCAGGAAA+TGG | 0.456697 | 3_4:-41287607 | None:intergenic |
| TGCGTTGATGCTCGGACGGG+TGG | 0.459759 | 3_4:-41287299 | None:intergenic |
| AAATTTGAAACAACTTCAAA+AGG | 0.460042 | 3_4:-41286645 | None:intergenic |
| AATCGCAGCGTGCAGAGTAT+TGG | 0.468481 | 3_4:+41286445 | Msa0500720:CDS |
| AAACAACCTTAAATAATGGT+TGG | 0.475627 | 3_4:-41283301 | None:intergenic |
| CAGTCGAGGATTGGGATGTC+AGG | 0.477065 | 3_4:+41287368 | Msa0500720:CDS |
| GAATTTGTCTCCTAGTTCAA+TGG | 0.477213 | 3_4:+41287210 | Msa0500720:CDS |
| ACCCCATTTGCGTTGATGCT+CGG | 0.485276 | 3_4:-41287307 | None:intergenic |
| CGTATAGGGTTGAAGAATTG+AGG | 0.485580 | 3_4:-41283424 | None:intergenic |
| GCAATCCATGAAGCAAATCT+TGG | 0.486555 | 3_4:-41286375 | None:intergenic |
| TTCAAATCTGTTGAGGAAAA+GGG | 0.487836 | 3_4:-41286424 | None:intergenic |
| ATTGCCAATGGCATAGCATC+TGG | 0.497699 | 3_4:+41286393 | Msa0500720:CDS |
| TTCTTAGCTGCTTACAGTGG+TGG | 0.506203 | 3_4:-41286481 | None:intergenic |
| GACGAGATACTGGGCATAGA+GGG | 0.506350 | 3_4:+41287094 | Msa0500720:CDS |
| CCTTGGCGGAGATGTCAAAC+TGG | 0.512208 | 3_4:+41286686 | Msa0500720:CDS |
| ATAGCAGTTTCATATTCATC+CGG | 0.512962 | 3_4:-41287013 | None:intergenic |
| CTTTGTTCCAGATAATTGGT+GGG | 0.515096 | 3_4:+41285706 | Msa0500720:intron |
| CATTTGCGTTGATGCTCGGA+CGG | 0.515549 | 3_4:-41287303 | None:intergenic |
| GCTTTCCTCAGCTCAGAGAA+AGG | 0.520012 | 3_4:-41287139 | None:intergenic |
| ACTGCTATCACCGAAATCCT+TGG | 0.520140 | 3_4:+41287028 | Msa0500720:CDS |
| ATATTATTGGGGAAGAAGAA+AGG | 0.523616 | 3_4:+41283564 | Msa0500720:CDS |
| AGACGAGATACTGGGCATAG+AGG | 0.526916 | 3_4:+41287093 | Msa0500720:CDS |
| ATTTGCGTTGATGCTCGGAC+GGG | 0.528746 | 3_4:-41287302 | None:intergenic |
| TTCCATCGACTAAAAGACCT+TGG | 0.530048 | 3_4:+41286669 | Msa0500720:CDS |
| GAGTTTCAATCTTGTTGTGA+TGG | 0.530542 | 3_4:+41283224 | Msa0500720:five_prime_UTR |
| TCGTGATACTCCATTGAACT+AGG | 0.530731 | 3_4:-41287220 | None:intergenic |
| GAGTAATGTGATTGAGAAGC+TGG | 0.532872 | 3_4:+41287584 | Msa0500720:three_prime_UTR |
| TATCACGATGATAAAGATGT+TGG | 0.537975 | 3_4:+41287235 | Msa0500720:CDS |
| CAGGACTATTATCTGGTACA+AGG | 0.538017 | 3_4:+41287407 | Msa0500720:CDS |
| GGATAGTTGTGGTGTTTGCA+TGG | 0.544147 | 3_4:+41283608 | Msa0500720:CDS |
| TTTGTTCCAGATAATTGGTG+GGG | 0.545379 | 3_4:+41285707 | Msa0500720:intron |
| ACTAGTAAAATCAACTGGAC+AGG | 0.545468 | 3_4:-41286298 | None:intergenic |
| CAAGAATTGTGGCTTTATCA+GGG | 0.554383 | 3_4:-41284895 | None:intergenic |
| AAATACAGTCTTTAACAAGC+TGG | 0.554977 | 3_4:-41286257 | None:intergenic |
| TTTGCTTCATGGATTGCCAA+TGG | 0.557728 | 3_4:+41286381 | Msa0500720:CDS |
| CCCAATCCTCGACTGTCTTG+GGG | 0.558714 | 3_4:-41287360 | None:intergenic |
| ATCCATGAAGCAAATCTTGG+TGG | 0.558816 | 3_4:-41286372 | None:intergenic |
| GAGATGTCAAACTGGTAAAG+TGG | 0.559575 | 3_4:+41286694 | Msa0500720:CDS |
| ACATATTGAGAAATTGAGAA+TGG | 0.561373 | 3_4:-41283705 | None:intergenic |
| AAAGCATTTGATGAGATATG+TGG | 0.562448 | 3_4:+41283645 | Msa0500720:CDS |
| AAGACCAGATGCTATGCCAT+TGG | 0.564508 | 3_4:-41286397 | None:intergenic |
| TCTGTAGCAGATGAACGAAA+AGG | 0.568832 | 3_4:+41287259 | Msa0500720:CDS |
| AGGAAGCACGAAAACGAGGT+TGG | 0.571360 | 3_4:-41283334 | None:intergenic |
| AATATCAACAGCAAGAATTG+TGG | 0.572618 | 3_4:-41284906 | None:intergenic |
| ACAACCTCAACTAGTTTCCA+GGG | 0.574936 | 3_4:+41287166 | Msa0500720:CDS |
| TAAAATGCATCCGACGCTCA+AGG | 0.583132 | 3_4:+41287452 | Msa0500720:CDS |
| GCGTTGATGCTCGGACGGGT+GGG | 0.583643 | 3_4:-41287298 | None:intergenic |
| CTAGGAGACAAATTCTCACT+CGG | 0.584986 | 3_4:-41287202 | None:intergenic |
| TAGATTGTGAGAAAGCGAAT+GGG | 0.585596 | 3_4:+41283587 | Msa0500720:CDS |
| TGGAGTTCCTCTCCTCATGT+AGG | 0.587941 | 3_4:+41286714 | Msa0500720:CDS |
| GTAGATTGTGAGAAAGCGAA+TGG | 0.588482 | 3_4:+41283586 | Msa0500720:CDS |
| TATTCTAAATGAACTAGTTG+AGG | 0.588736 | 3_4:+41284925 | Msa0500720:CDS |
| AAATTGCAACTGCCTTGCCA+AGG | 0.588829 | 3_4:-41287045 | None:intergenic |
| CCAGTTTGACATCTCCGCCA+AGG | 0.589341 | 3_4:-41286686 | None:intergenic |
| TCGGAGCAACAGCAAAACCC+TGG | 0.590217 | 3_4:-41287183 | None:intergenic |
| GTGGTAGAACCTGAAATAAG+AGG | 0.593905 | 3_4:+41287517 | Msa0500720:three_prime_UTR |
| AGTAACTGTACAATTCAAGC+AGG | 0.597709 | 3_4:-41287613 | None:intergenic |
| CATCGACTAAAAGACCTTGG+CGG | 0.597851 | 3_4:+41286672 | Msa0500720:CDS |
| AGATTTGAAGACGAGATACT+GGG | 0.597865 | 3_4:+41287085 | Msa0500720:CDS |
| TGTGACACTTTCAAAACAGA+TGG | 0.600394 | 3_4:-41286348 | None:intergenic |
| GCTGCGATTCAAATCTGTTG+AGG | 0.620937 | 3_4:-41286431 | None:intergenic |
| CTGATCCTTTCTCTGAGCTG+AGG | 0.621628 | 3_4:+41287134 | Msa0500720:CDS |
| GTGACTGATATCACTGTGAC+AGG | 0.622359 | 3_4:+41287665 | Msa0500720:three_prime_UTR |
| TATCACCGAAATCCTTGGCA+AGG | 0.640870 | 3_4:+41287033 | Msa0500720:CDS |
| AATGTTACAACCTTGAGCGT+CGG | 0.641835 | 3_4:-41287462 | None:intergenic |
| TCCGAGCATCAACGCAAATG+GGG | 0.642055 | 3_4:+41287306 | Msa0500720:CDS |
| TTGTGTCCCCAAGACAGTCG+AGG | 0.643365 | 3_4:+41287354 | Msa0500720:CDS |
| GTGACACTTTCAAAACAGAT+GGG | 0.646924 | 3_4:-41286347 | None:intergenic |
| TTTGGTGGTAGATATTATTG+GGG | 0.651148 | 3_4:+41283553 | Msa0500720:CDS |
| ATACTGACCTACATGAGGAG+AGG | 0.654599 | 3_4:-41286721 | None:intergenic |
| GTTAAGGAAGCACGAAAACG+AGG | 0.657118 | 3_4:-41283338 | None:intergenic |
| AAAACCCTGGAAACTAGTTG+AGG | 0.669085 | 3_4:-41287170 | None:intergenic |
| TCAAGATACTGACCTACATG+AGG | 0.682155 | 3_4:-41286726 | None:intergenic |
| ATACAAGTTTGAATCTGATG+TGG | 0.699426 | 3_4:+41287498 | Msa0500720:three_prime_UTR |
| GAAAGCGAATGGGATAGTTG+TGG | 0.713351 | 3_4:+41283597 | Msa0500720:CDS |
| GACTATTATCTGGTACAAGG+AGG | 0.724614 | 3_4:+41287410 | Msa0500720:CDS |
| GTTTGCATGGATGTCAAGTG+AGG | 0.735962 | 3_4:+41283621 | Msa0500720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTATTTCTTCTATT+GGG | - | chr3_4:41283193-41283212 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTCTTCTAT+TGG | - | chr3_4:41283194-41283213 | None:intergenic | 10.0% |
| !! | GAAGAAATAAAAAATAATAA+TGG | + | chr3_4:41283197-41283216 | Msa0500720:five_prime_UTR | 10.0% |
| !!! | CATTTAATAAATTTTCAAAT+GGG | - | chr3_4:41283482-41283501 | None:intergenic | 10.0% |
| !!! | ACATTTAATAAATTTTCAAA+TGG | - | chr3_4:41283483-41283502 | None:intergenic | 10.0% |
| !! | TTGAAAATTTATTAAATGTT+CGG | + | chr3_4:41283484-41283503 | Msa0500720:five_prime_UTR | 10.0% |
| !!! | TTTATTTACATTTTTACCAT+TGG | + | chr3_4:41285643-41285662 | Msa0500720:intron | 15.0% |
| !!! | TAGTATTTTATTTGTGTTTT+AGG | + | chr3_4:41286098-41286117 | Msa0500720:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTGAAC+AGG | - | chr3_4:41286169-41286188 | None:intergenic | 15.0% |
| !!! | AAATTTTACTTGAATATGTT+AGG | + | chr3_4:41286974-41286993 | Msa0500720:intron | 15.0% |
| !!! | TGAAAAATTCGATTTTTATG+TGG | - | chr3_4:41283455-41283474 | None:intergenic | 20.0% |
| !!! | ATTTTTTGAAAAGTATCACT+TGG | + | chr3_4:41284463-41284482 | Msa0500720:intron | 20.0% |
| !! | TTGTGCACATTAATTTAAAT+AGG | + | chr3_4:41284648-41284667 | Msa0500720:intron | 20.0% |
| !! | TGTGCACATTAATTTAAATA+GGG | + | chr3_4:41284649-41284668 | Msa0500720:intron | 20.0% |
| !!! | ACATTTTTTAAAATGTCCTT+CGG | - | chr3_4:41284688-41284707 | None:intergenic | 20.0% |
| !! | CAAATTTAGCTAAAAATGTT+AGG | - | chr3_4:41284715-41284734 | None:intergenic | 20.0% |
| !!! | TTTAGACATTTTCTAATCAA+CGG | - | chr3_4:41285129-41285148 | None:intergenic | 20.0% |
| !! | CTAAGTAAGTATAGATTAAT+TGG | + | chr3_4:41285192-41285211 | Msa0500720:intron | 20.0% |
| !!! | AACTATATGAGCAATTTTTT+TGG | - | chr3_4:41285229-41285248 | None:intergenic | 20.0% |
| !! | ATCATTTAAATTATGAAGCA+TGG | - | chr3_4:41285920-41285939 | None:intergenic | 20.0% |
| !!! | TTTCCCTTTACTAATTATTT+TGG | + | chr3_4:41285945-41285964 | Msa0500720:intron | 20.0% |
| !! | TGTCCAAAATAATTAGTAAA+GGG | - | chr3_4:41285951-41285970 | None:intergenic | 20.0% |
| !! | TTGTCCAAAATAATTAGTAA+AGG | - | chr3_4:41285952-41285971 | None:intergenic | 20.0% |
| !!! | AAATTTGAAACAACTTCAAA+AGG | - | chr3_4:41286648-41286667 | None:intergenic | 20.0% |
| !!! | CAATCTAAAGTACAAAATTA+CGG | - | chr3_4:41286814-41286833 | None:intergenic | 20.0% |
| !!! | ATGAACGAATGTAATTTTTA+TGG | + | chr3_4:41286923-41286942 | Msa0500720:intron | 20.0% |
| !! | AGATTTCAAGATATGTTTTG+AGG | - | chr3_4:41283260-41283279 | None:intergenic | 25.0% |
| ! | AACAACCTTAAATAATGGTT+GGG | - | chr3_4:41283303-41283322 | None:intergenic | 25.0% |
| ! | AAACAACCTTAAATAATGGT+TGG | - | chr3_4:41283304-41283323 | None:intergenic | 25.0% |
| ! | CAAGAAACAACCTTAAATAA+TGG | - | chr3_4:41283308-41283327 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTGCTGATGTTA+AGG | - | chr3_4:41283357-41283376 | None:intergenic | 25.0% |
| ! | TTTATGTGGAAAATCGTATA+GGG | - | chr3_4:41283441-41283460 | None:intergenic | 25.0% |
| !! | TTTTATGTGGAAAATCGTAT+AGG | - | chr3_4:41283442-41283461 | None:intergenic | 25.0% |
| !!! | TTTTGTAGTGTTGAAAAAGA+AGG | + | chr3_4:41283518-41283537 | Msa0500720:five_prime_UTR | 25.0% |
| ! | TTGAAAAAGAAGGAAAATGT+GGG | + | chr3_4:41283528-41283547 | Msa0500720:exon | 25.0% |
| ! | ACATATTGAGAAATTGAGAA+TGG | - | chr3_4:41283708-41283727 | None:intergenic | 25.0% |
| ! | AAATCCATGTCTTGTAAAAT+TGG | - | chr3_4:41283827-41283846 | None:intergenic | 25.0% |
| ! | AAATTGAAGCAAAAGAGAAT+TGG | + | chr3_4:41283966-41283985 | Msa0500720:intron | 25.0% |
| ! | CAAACATAAAACAATTATCC+TGG | - | chr3_4:41284103-41284122 | None:intergenic | 25.0% |
| ! | TTCAAAAACCTATAAAGCAA+AGG | - | chr3_4:41284187-41284206 | None:intergenic | 25.0% |
| !! | TTAACATGGACCTTTTTAAA+AGG | + | chr3_4:41284431-41284450 | Msa0500720:intron | 25.0% |
| !!! | TTATAGCAAGCCTTTTAAAA+AGG | - | chr3_4:41284444-41284463 | None:intergenic | 25.0% |
| ! | TATAAAGAAGGCTGTTAAAT+AGG | - | chr3_4:41284497-41284516 | None:intergenic | 25.0% |
| ! | ATTAGTCAACATAAAGACAT+AGG | - | chr3_4:41284555-41284574 | None:intergenic | 25.0% |
| !! | TATGTCTTTATGTTGACTAA+TGG | + | chr3_4:41284554-41284573 | Msa0500720:intron | 25.0% |
| !! | ATGTCTTTATGTTGACTAAT+GGG | + | chr3_4:41284555-41284574 | Msa0500720:intron | 25.0% |
| !!! | CATTTTTTAAAATGTCCTTC+GGG | - | chr3_4:41284687-41284706 | None:intergenic | 25.0% |
| !!! | ATTTGCTTTTAAGAAATCCT+TGG | + | chr3_4:41284730-41284749 | Msa0500720:intron | 25.0% |
| ! | GCTTATTAACTAAATAAGCT+AGG | - | chr3_4:41284756-41284775 | None:intergenic | 25.0% |
| ! | TGTTAAGTTCAATATCCATA+GGG | - | chr3_4:41284853-41284872 | None:intergenic | 25.0% |
| ! | ATGTTAAGTTCAATATCCAT+AGG | - | chr3_4:41284854-41284873 | None:intergenic | 25.0% |
| ! | TATTCTAAATGAACTAGTTG+AGG | + | chr3_4:41284925-41284944 | Msa0500720:CDS | 25.0% |
| ! | AATTTACACTAAAATGAGTC+TGG | + | chr3_4:41285058-41285077 | Msa0500720:intron | 25.0% |
| !! | TTAGACATTTTCTAATCAAC+GGG | - | chr3_4:41285128-41285147 | None:intergenic | 25.0% |
| !!! | TCTTCAGGTATTTTAACTAT+AGG | + | chr3_4:41285604-41285623 | Msa0500720:intron | 25.0% |
| !! | CACATAATATGGTATGTTTT+CGG | + | chr3_4:41285739-41285758 | Msa0500720:intron | 25.0% |
| ! | ATCCTCAAATAAATTGCTAA+AGG | - | chr3_4:41285765-41285784 | None:intergenic | 25.0% |
| ! | TTTAAATTATGAAGCATGGA+TGG | - | chr3_4:41285916-41285935 | None:intergenic | 25.0% |
| ! | AAATCACTAGTAAAATCAAC+TGG | - | chr3_4:41286306-41286325 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTACTAGTGATT+TGG | + | chr3_4:41286305-41286324 | Msa0500720:CDS | 25.0% |
| !!! | GTTGATTTTACTAGTGATTT+GGG | + | chr3_4:41286306-41286325 | Msa0500720:CDS | 25.0% |
| !! | AAAAAATGGAGGTAATTTGT+TGG | - | chr3_4:41286528-41286547 | None:intergenic | 25.0% |
| !!! | AAATTACCTCCATTTTTTTG+AGG | + | chr3_4:41286530-41286549 | Msa0500720:intron | 25.0% |
| ! | TCTGAACAAAAAATGAGATA+CGG | - | chr3_4:41286609-41286628 | None:intergenic | 25.0% |
| ! | TAATTATGCATAATAGTGCA+CGG | + | chr3_4:41286750-41286769 | Msa0500720:intron | 25.0% |
| !! | ATGCATTTTATAGGATTGAA+AGG | - | chr3_4:41287442-41287461 | None:intergenic | 25.0% |
| CTTAACCCAACCATTATTTA+AGG | + | chr3_4:41283295-41283314 | Msa0500720:five_prime_UTR | 30.0% | |
| TTGAGGAAGAAAAAGAAGAA+GGG | - | chr3_4:41283410-41283429 | None:intergenic | 30.0% | |
| ATTGAGGAAGAAAAAGAAGA+AGG | - | chr3_4:41283411-41283430 | None:intergenic | 30.0% | |
| GTTGAAAAAGAAGGAAAATG+TGG | + | chr3_4:41283527-41283546 | Msa0500720:exon | 30.0% | |
| TGAAAAAGAAGGAAAATGTG+GGG | + | chr3_4:41283529-41283548 | Msa0500720:exon | 30.0% | |
| ! | GTTTGGTGGTAGATATTATT+GGG | + | chr3_4:41283552-41283571 | Msa0500720:CDS | 30.0% |
| ! | TTTGGTGGTAGATATTATTG+GGG | + | chr3_4:41283553-41283572 | Msa0500720:CDS | 30.0% |
| ATATTATTGGGGAAGAAGAA+AGG | + | chr3_4:41283564-41283583 | Msa0500720:CDS | 30.0% | |
| ! | AAAGCATTTGATGAGATATG+TGG | + | chr3_4:41283645-41283664 | Msa0500720:CDS | 30.0% |
| TAGTTGTAAATGCCTGATAA+GGG | + | chr3_4:41283770-41283789 | Msa0500720:intron | 30.0% | |
| ! | ACTACCAATTTTACAAGACA+TGG | + | chr3_4:41283820-41283839 | Msa0500720:intron | 30.0% |
| CATAAAACAATTATCCTGGA+TGG | - | chr3_4:41284099-41284118 | None:intergenic | 30.0% | |
| AACTTCATGAAGCTAATATG+CGG | - | chr3_4:41284138-41284157 | None:intergenic | 30.0% | |
| TAGCTTCATGAAGTTTGATT+AGG | + | chr3_4:41284143-41284162 | Msa0500720:intron | 30.0% | |
| TCATGAAGTTTGATTAGGAT+TGG | + | chr3_4:41284148-41284167 | Msa0500720:intron | 30.0% | |
| AGACAATACTATTTGTTTGC+TGG | + | chr3_4:41284209-41284228 | Msa0500720:intron | 30.0% | |
| TAGTCTCTATACTGTATAGA+TGG | - | chr3_4:41284309-41284328 | None:intergenic | 30.0% | |
| ! | GTTGGCTTATTTACTTAACA+TGG | + | chr3_4:41284417-41284436 | Msa0500720:intron | 30.0% |
| TATTTAGTTAATAAGCCGAG+AGG | + | chr3_4:41284760-41284779 | Msa0500720:intron | 30.0% | |
| AATATCAACAGCAAGAATTG+TGG | - | chr3_4:41284909-41284928 | None:intergenic | 30.0% | |
| GAAAAAGATGCAAAGACAAT+GGG | - | chr3_4:41285554-41285573 | None:intergenic | 30.0% | |
| AGAAAAAGATGCAAAGACAA+TGG | - | chr3_4:41285555-41285574 | None:intergenic | 30.0% | |
| ! | ATTGTCTTTGCATCTTTTTC+TGG | + | chr3_4:41285554-41285573 | Msa0500720:CDS | 30.0% |
| TGCAAAAGCTTGTATGTTAA+AGG | + | chr3_4:41285580-41285599 | Msa0500720:CDS | 30.0% | |
| TTGTATGTTAAAGGTTCTTC+AGG | + | chr3_4:41285589-41285608 | Msa0500720:CDS | 30.0% | |
| TTTCCTTTGTTCCAGATAAT+TGG | + | chr3_4:41285702-41285721 | Msa0500720:intron | 30.0% | |
| TCATGTTTATATGTGAAACG+AGG | + | chr3_4:41285865-41285884 | Msa0500720:intron | 30.0% | |
| TGGCTTATAACTAGAAAAAC+CGG | - | chr3_4:41286049-41286068 | None:intergenic | 30.0% | |
| !!! | TTTTTCTAGTTATAAGCCAG+CGG | + | chr3_4:41286050-41286069 | Msa0500720:intron | 30.0% |
| !!! | TTTTTTTGTGAACAGGAACT+TGG | - | chr3_4:41286162-41286181 | None:intergenic | 30.0% |
| ! | CTTAATTTTTGTCATTGCAC+AGG | + | chr3_4:41286227-41286246 | Msa0500720:intron | 30.0% |
| AAATACAGTCTTTAACAAGC+TGG | - | chr3_4:41286260-41286279 | None:intergenic | 30.0% | |
| CTTGTTAAAGACTGTATTTC+TGG | + | chr3_4:41286261-41286280 | Msa0500720:CDS | 30.0% | |
| TTCAAATCTGTTGAGGAAAA+GGG | - | chr3_4:41286427-41286446 | None:intergenic | 30.0% | |
| ATTCAAATCTGTTGAGGAAA+AGG | - | chr3_4:41286428-41286447 | None:intergenic | 30.0% | |
| AAGATACCTCAAAAAAATGG+AGG | - | chr3_4:41286539-41286558 | None:intergenic | 30.0% | |
| GTCAAGATACCTCAAAAAAA+TGG | - | chr3_4:41286542-41286561 | None:intergenic | 30.0% | |
| TCTTGACATATCTGCTTATT+AGG | + | chr3_4:41286555-41286574 | Msa0500720:intron | 30.0% | |
| CTGAACAAAAAATGAGATAC+GGG | - | chr3_4:41286608-41286627 | None:intergenic | 30.0% | |
| !!! | TTCGTTTATGCTAGTTTTCT+TGG | + | chr3_4:41286851-41286870 | Msa0500720:intron | 30.0% |
| ATGATTCGTTGTGCAAAAAT+TGG | + | chr3_4:41286879-41286898 | Msa0500720:intron | 30.0% | |
| TTCGTTCATTACAATTTCCA+TGG | - | chr3_4:41286912-41286931 | None:intergenic | 30.0% | |
| ATAGCAGTTTCATATTCATC+CGG | - | chr3_4:41287016-41287035 | None:intergenic | 30.0% | |
| !!! | CTTCAAATCTTCTGTTTTTG+TGG | - | chr3_4:41287075-41287094 | None:intergenic | 30.0% |
| TATCACGATGATAAAGATGT+TGG | + | chr3_4:41287235-41287254 | Msa0500720:CDS | 30.0% | |
| AAAAATGCAGGACTATTATC+TGG | + | chr3_4:41287400-41287419 | Msa0500720:CDS | 30.0% | |
| ATACAAGTTTGAATCTGATG+TGG | + | chr3_4:41287498-41287517 | Msa0500720:three_prime_UTR | 30.0% | |
| AATTAAAAAGACAGCTGAGA+GGG | - | chr3_4:41287561-41287580 | None:intergenic | 30.0% | |
| TAATTAAAAAGACAGCTGAG+AGG | - | chr3_4:41287562-41287581 | None:intergenic | 30.0% | |
| ! | GAGTTTCAATCTTGTTGTGA+TGG | + | chr3_4:41283224-41283243 | Msa0500720:five_prime_UTR | 35.0% |
| GAAAAAGAAGGAAAATGTGG+GGG | + | chr3_4:41283530-41283549 | Msa0500720:exon | 35.0% | |
| !! | GGTTTGGTGGTAGATATTAT+TGG | + | chr3_4:41283551-41283570 | Msa0500720:CDS | 35.0% |
| TAGATTGTGAGAAAGCGAAT+GGG | + | chr3_4:41283587-41283606 | Msa0500720:CDS | 35.0% | |
| GTAGTTGTAAATGCCTGATA+AGG | + | chr3_4:41283769-41283788 | Msa0500720:intron | 35.0% | |
| AGCAAAAGAGAATTGGTGAA+TGG | + | chr3_4:41283973-41283992 | Msa0500720:intron | 35.0% | |
| ACTCGTATGTCTATTAGTAC+TGG | + | chr3_4:41284012-41284031 | Msa0500720:intron | 35.0% | |
| ! | TCTATTAGTACTGGACATTG+TGG | + | chr3_4:41284021-41284040 | Msa0500720:intron | 35.0% |
| AAGATTGAAGCCTGATTACA+AGG | + | chr3_4:41284060-41284079 | Msa0500720:intron | 35.0% | |
| ACAGTATAGAGACTATACTG+TGG | + | chr3_4:41284314-41284333 | Msa0500720:intron | 35.0% | |
| TTACACATCTCACTGTATAC+CGG | + | chr3_4:41284341-41284360 | Msa0500720:intron | 35.0% | |
| CTAAGCCTTACCTTAAAACA+GGG | + | chr3_4:41284395-41284414 | Msa0500720:intron | 35.0% | |
| ! | AATAAGCCAACCCTGTTTTA+AGG | - | chr3_4:41284408-41284427 | None:intergenic | 35.0% |
| GCAAGGTCTTACTATAAAGA+AGG | - | chr3_4:41284509-41284528 | None:intergenic | 35.0% | |
| TAACTAAATAAGCTAGGCCA+AGG | - | chr3_4:41284750-41284769 | None:intergenic | 35.0% | |
| ATTATTCCTTACTTGCCTCT+CGG | - | chr3_4:41284778-41284797 | None:intergenic | 35.0% | |
| AGTTCAATATCCATAGGGAT+GGG | - | chr3_4:41284848-41284867 | None:intergenic | 35.0% | |
| AAGTTCAATATCCATAGGGA+TGG | - | chr3_4:41284849-41284868 | None:intergenic | 35.0% | |
| !! | CAAGAATTGTGGCTTTATCA+GGG | - | chr3_4:41284898-41284917 | None:intergenic | 35.0% |
| TGACTGATCTACAAAATGGA+AGG | - | chr3_4:41284967-41284986 | None:intergenic | 35.0% | |
| AGACTGACTGATCTACAAAA+TGG | - | chr3_4:41284971-41284990 | None:intergenic | 35.0% | |
| ! | ATTTTCCTTGCATGCTAAAG+TGG | + | chr3_4:41285015-41285034 | Msa0500720:intron | 35.0% |
| TCAGTGTTCTACAGTTTCTA+CGG | + | chr3_4:41285368-41285387 | Msa0500720:intron | 35.0% | |
| ! | CTGCTATTTGTTCAATATGC+AGG | + | chr3_4:41285508-41285527 | Msa0500720:intron | 35.0% |
| !! | ATATGCAGGTGCTGAAAATT+AGG | + | chr3_4:41285522-41285541 | Msa0500720:intron | 35.0% |
| CTTTGTTCCAGATAATTGGT+GGG | + | chr3_4:41285706-41285725 | Msa0500720:intron | 35.0% | |
| TTTGTTCCAGATAATTGGTG+GGG | + | chr3_4:41285707-41285726 | Msa0500720:intron | 35.0% | |
| GGAGTGTGAAACACATAATA+TGG | + | chr3_4:41285728-41285747 | Msa0500720:CDS | 35.0% | |
| GGCCTTTAGCAATTTATTTG+AGG | + | chr3_4:41285760-41285779 | Msa0500720:intron | 35.0% | |
| TAAATGACCAAAAAACCCAG+CGG | + | chr3_4:41286010-41286029 | Msa0500720:intron | 35.0% | |
| AAATACTAAAATACCCCCAG+CGG | - | chr3_4:41286086-41286105 | None:intergenic | 35.0% | |
| ACTAGTAAAATCAACTGGAC+AGG | - | chr3_4:41286301-41286320 | None:intergenic | 35.0% | |
| GTGACACTTTCAAAACAGAT+GGG | - | chr3_4:41286350-41286369 | None:intergenic | 35.0% | |
| TGTGACACTTTCAAAACAGA+TGG | - | chr3_4:41286351-41286370 | None:intergenic | 35.0% | |
| AAATTACGGCACGAGTTATT+AGG | - | chr3_4:41286800-41286819 | None:intergenic | 35.0% | |
| !!! | CAAATCTTCTGTTTTTGTGG+CGG | - | chr3_4:41287072-41287091 | None:intergenic | 35.0% |
| AAGATTTGAAGACGAGATAC+TGG | + | chr3_4:41287084-41287103 | Msa0500720:CDS | 35.0% | |
| AGATTTGAAGACGAGATACT+GGG | + | chr3_4:41287085-41287104 | Msa0500720:CDS | 35.0% | |
| GAATTTGTCTCCTAGTTCAA+TGG | + | chr3_4:41287210-41287229 | Msa0500720:CDS | 35.0% | |
| AGGTCGAATTCAAAAAATGC+AGG | + | chr3_4:41287388-41287407 | Msa0500720:CDS | 35.0% | |
| TGTACAATTCAAGCAGGAAA+TGG | - | chr3_4:41287610-41287629 | None:intergenic | 35.0% | |
| AGTAACTGTACAATTCAAGC+AGG | - | chr3_4:41287616-41287635 | None:intergenic | 35.0% | |
| CGTATAGGGTTGAAGAATTG+AGG | - | chr3_4:41283427-41283446 | None:intergenic | 40.0% | |
| GTAGATTGTGAGAAAGCGAA+TGG | + | chr3_4:41283586-41283605 | Msa0500720:CDS | 40.0% | |
| ATCTCTACTCTTCTCTTGGT+TGG | + | chr3_4:41283668-41283687 | Msa0500720:CDS | 40.0% | |
| ! | TGCCTGATAAGGGTTGATTT+AGG | + | chr3_4:41283780-41283799 | Msa0500720:intron | 40.0% |
| CACCTAAATCAACCCTTATC+AGG | - | chr3_4:41283785-41283804 | None:intergenic | 40.0% | |
| ! | CTGATAAGGGTTGATTTAGG+TGG | + | chr3_4:41283783-41283802 | Msa0500720:intron | 40.0% |
| ! | TAAGGGTTGATTTAGGTGGA+TGG | + | chr3_4:41283787-41283806 | Msa0500720:intron | 40.0% |
| TACTGGACATTGTGGTTTAC+TGG | + | chr3_4:41284029-41284048 | Msa0500720:intron | 40.0% | |
| ACTGGACATTGTGGTTTACT+GGG | + | chr3_4:41284030-41284049 | Msa0500720:intron | 40.0% | |
| CTAATATGCGGTGGTTTCTT+CGG | - | chr3_4:41284126-41284145 | None:intergenic | 40.0% | |
| TTCATGAAGCTAATATGCGG+TGG | - | chr3_4:41284135-41284154 | None:intergenic | 40.0% | |
| CAGTTGTGCCTTTGCTTTAT+AGG | + | chr3_4:41284176-41284195 | Msa0500720:intron | 40.0% | |
| !! | TTGGTAATGGAAAATGCCTC+TGG | - | chr3_4:41284247-41284266 | None:intergenic | 40.0% |
| ! | CATCGAGTTGCAATTGGTAA+TGG | - | chr3_4:41284260-41284279 | None:intergenic | 40.0% |
| ! | AACAGACATCGAGTTGCAAT+TGG | - | chr3_4:41284266-41284285 | None:intergenic | 40.0% |
| CACTGTATACCGGATGATTA+CGG | + | chr3_4:41284351-41284370 | Msa0500720:intron | 40.0% | |
| ACTGTATACCGGATGATTAC+GGG | + | chr3_4:41284352-41284371 | Msa0500720:intron | 40.0% | |
| GCTAAGCCTTACCTTAAAAC+AGG | + | chr3_4:41284394-41284413 | Msa0500720:intron | 40.0% | |
| ACCTTGCCTATCTCCAAATA+GGG | + | chr3_4:41284522-41284541 | Msa0500720:intron | 40.0% | |
| CTAATGCCCTATTTGGAGAT+AGG | - | chr3_4:41284531-41284550 | None:intergenic | 40.0% | |
| ! | CTATCTCCAAATAGGGCATT+AGG | + | chr3_4:41284529-41284548 | Msa0500720:intron | 40.0% |
| !! | GCAAGAATTGTGGCTTTATC+AGG | - | chr3_4:41284899-41284918 | None:intergenic | 40.0% |
| CAGTCAGTCTGAATTCAAGT+CGG | + | chr3_4:41284981-41285000 | Msa0500720:intron | 40.0% | |
| ATAGACCACTTTAGCATGCA+AGG | - | chr3_4:41285023-41285042 | None:intergenic | 40.0% | |
| AGAGCATAGTTAGTACAGCT+AGG | + | chr3_4:41285169-41285188 | Msa0500720:intron | 40.0% | |
| TATAGTAGTTGTGCTTGTGC+AGG | - | chr3_4:41285275-41285294 | None:intergenic | 40.0% | |
| ! | GTCTTTGCATCTTTTTCTGG+TGG | + | chr3_4:41285557-41285576 | Msa0500720:CDS | 40.0% |
| CCAGAATTAAGAGCTCTTAC+AGG | - | chr3_4:41285669-41285688 | None:intergenic | 40.0% | |
| CCTGTAAGAGCTCTTAATTC+TGG | + | chr3_4:41285666-41285685 | Msa0500720:intron | 40.0% | |
| ! | CCACCAATTATCTGGAACAA+AGG | - | chr3_4:41285708-41285727 | None:intergenic | 40.0% |
| CCTTTGTTCCAGATAATTGG+TGG | + | chr3_4:41285705-41285724 | Msa0500720:intron | 40.0% | |
| ! | ATCCACCAAGATTTGCTTCA+TGG | + | chr3_4:41286370-41286389 | Msa0500720:CDS | 40.0% |
| ATCCATGAAGCAAATCTTGG+TGG | - | chr3_4:41286375-41286394 | None:intergenic | 40.0% | |
| GCAATCCATGAAGCAAATCT+TGG | - | chr3_4:41286378-41286397 | None:intergenic | 40.0% | |
| ! | TTTGCTTCATGGATTGCCAA+TGG | + | chr3_4:41286381-41286400 | Msa0500720:CDS | 40.0% |
| GTATTCTTAGCTGCTTACAG+TGG | - | chr3_4:41286487-41286506 | None:intergenic | 40.0% | |
| ! | CTTTTTGTTGCAGAGTATGC+AGG | + | chr3_4:41286581-41286600 | Msa0500720:intron | 40.0% |
| ! | TTCCATCGACTAAAAGACCT+TGG | + | chr3_4:41286669-41286688 | Msa0500720:CDS | 40.0% |
| GAGATGTCAAACTGGTAAAG+TGG | + | chr3_4:41286694-41286713 | Msa0500720:CDS | 40.0% | |
| TCAAGATACTGACCTACATG+AGG | - | chr3_4:41286729-41286748 | None:intergenic | 40.0% | |
| AGTGCACGGATGAGATAATA+AGG | + | chr3_4:41286764-41286783 | Msa0500720:intron | 40.0% | |
| CAAAAATTGGTGTGCAACCA+TGG | + | chr3_4:41286892-41286911 | Msa0500720:intron | 40.0% | |
| TTTATGGCATGCATGTACAG+AGG | + | chr3_4:41286939-41286958 | Msa0500720:intron | 40.0% | |
| !! | AGGTCATTTTCGTCATCATC+CGG | + | chr3_4:41286994-41287013 | Msa0500720:intron | 40.0% |
| ! | AACAACCTCAACTAGTTTCC+AGG | + | chr3_4:41287165-41287184 | Msa0500720:CDS | 40.0% |
| ! | ACAACCTCAACTAGTTTCCA+GGG | + | chr3_4:41287166-41287185 | Msa0500720:CDS | 40.0% |
| AAAACCCTGGAAACTAGTTG+AGG | - | chr3_4:41287173-41287192 | None:intergenic | 40.0% | |
| CTAGGAGACAAATTCTCACT+CGG | - | chr3_4:41287205-41287224 | None:intergenic | 40.0% | |
| TCGTGATACTCCATTGAACT+AGG | - | chr3_4:41287223-41287242 | None:intergenic | 40.0% | |
| TCTGTAGCAGATGAACGAAA+AGG | + | chr3_4:41287259-41287278 | Msa0500720:CDS | 40.0% | |
| CAGGACTATTATCTGGTACA+AGG | + | chr3_4:41287407-41287426 | Msa0500720:CDS | 40.0% | |
| GACTATTATCTGGTACAAGG+AGG | + | chr3_4:41287410-41287429 | Msa0500720:CDS | 40.0% | |
| AATGTTACAACCTTGAGCGT+CGG | - | chr3_4:41287465-41287484 | None:intergenic | 40.0% | |
| GTGGTAGAACCTGAAATAAG+AGG | + | chr3_4:41287517-41287536 | Msa0500720:three_prime_UTR | 40.0% | |
| GAGGGAATTTACAAGTCGTT+TGG | - | chr3_4:41287543-41287562 | None:intergenic | 40.0% | |
| GAGTAATGTGATTGAGAAGC+TGG | + | chr3_4:41287584-41287603 | Msa0500720:three_prime_UTR | 40.0% | |
| ! | GTTAAGGAAGCACGAAAACG+AGG | - | chr3_4:41283341-41283360 | None:intergenic | 45.0% |
| AGAAGGAAAATGTGGGGGTT+TGG | + | chr3_4:41283535-41283554 | Msa0500720:exon | 45.0% | |
| GAAAGCGAATGGGATAGTTG+TGG | + | chr3_4:41283597-41283616 | Msa0500720:CDS | 45.0% | |
| GGATAGTTGTGGTGTTTGCA+TGG | + | chr3_4:41283608-41283627 | Msa0500720:CDS | 45.0% | |
| GTTTGCATGGATGTCAAGTG+AGG | + | chr3_4:41283621-41283640 | Msa0500720:CDS | 45.0% | |
| GTGGATCTCTACTCTTCTCT+TGG | + | chr3_4:41283664-41283683 | Msa0500720:CDS | 45.0% | |
| TTGAAGCCTGATTACAAGGC+AGG | + | chr3_4:41284064-41284083 | Msa0500720:intron | 45.0% | |
| TGAAGCCTGATTACAAGGCA+GGG | + | chr3_4:41284065-41284084 | Msa0500720:intron | 45.0% | |
| ! | GTAATGGAAAATGCCTCTGG+TGG | - | chr3_4:41284244-41284263 | None:intergenic | 45.0% |
| CATTTCCACCCGTAATCATC+CGG | - | chr3_4:41284363-41284382 | None:intergenic | 45.0% | |
| GCCTTACCTTAAAACAGGGT+TGG | + | chr3_4:41284399-41284418 | Msa0500720:intron | 45.0% | |
| !!! | GCCAACCCTGTTTTAAGGTA+AGG | - | chr3_4:41284403-41284422 | None:intergenic | 45.0% |
| GACCTTGCCTATCTCCAAAT+AGG | + | chr3_4:41284521-41284540 | Msa0500720:intron | 45.0% | |
| CATAGGCCTAATGCCCTATT+TGG | - | chr3_4:41284538-41284557 | None:intergenic | 45.0% | |
| AATAAGCCGAGAGGCAAGTA+AGG | + | chr3_4:41284769-41284788 | Msa0500720:intron | 45.0% | |
| TAAGAGCTCTTACAGGCCAA+TGG | - | chr3_4:41285662-41285681 | None:intergenic | 45.0% | |
| TGAAGCATGGATGGCAAGTT+GGG | - | chr3_4:41285907-41285926 | None:intergenic | 45.0% | |
| ATGAAGCATGGATGGCAAGT+TGG | - | chr3_4:41285908-41285927 | None:intergenic | 45.0% | |
| !!! | TTAACTGCCGCTGGGTTTTT+TGG | - | chr3_4:41286020-41286039 | None:intergenic | 45.0% |
| ATTGCCAATGGCATAGCATC+TGG | + | chr3_4:41286393-41286412 | Msa0500720:CDS | 45.0% | |
| AAGACCAGATGCTATGCCAT+TGG | - | chr3_4:41286400-41286419 | None:intergenic | 45.0% | |
| GCTGCGATTCAAATCTGTTG+AGG | - | chr3_4:41286434-41286453 | None:intergenic | 45.0% | |
| TTCTTAGCTGCTTACAGTGG+TGG | - | chr3_4:41286484-41286503 | None:intergenic | 45.0% | |
| ! | CATCGACTAAAAGACCTTGG+CGG | + | chr3_4:41286672-41286691 | Msa0500720:CDS | 45.0% |
| ATACTGACCTACATGAGGAG+AGG | - | chr3_4:41286724-41286743 | None:intergenic | 45.0% | |
| ACTGCTATCACCGAAATCCT+TGG | + | chr3_4:41287028-41287047 | Msa0500720:CDS | 45.0% | |
| TATCACCGAAATCCTTGGCA+AGG | + | chr3_4:41287033-41287052 | Msa0500720:CDS | 45.0% | |
| AACTGCCTTGCCAAGGATTT+CGG | - | chr3_4:41287041-41287060 | None:intergenic | 45.0% | |
| AAATTGCAACTGCCTTGCCA+AGG | - | chr3_4:41287048-41287067 | None:intergenic | 45.0% | |
| ATCAACGCAAATGGGGTTCT+TGG | + | chr3_4:41287313-41287332 | Msa0500720:CDS | 45.0% | |
| !!! | GAGCGTCGGATGCATTTTAT+AGG | - | chr3_4:41287451-41287470 | None:intergenic | 45.0% |
| TAAAATGCATCCGACGCTCA+AGG | + | chr3_4:41287452-41287471 | Msa0500720:CDS | 45.0% | |
| ! | GTCGTTTGGCCTCTTATTTC+AGG | - | chr3_4:41287529-41287548 | None:intergenic | 45.0% |
| GTGACTGATATCACTGTGAC+AGG | + | chr3_4:41287665-41287684 | Msa0500720:three_prime_UTR | 45.0% | |
| ! | AGGAAGCACGAAAACGAGGT+TGG | - | chr3_4:41283337-41283356 | None:intergenic | 50.0% |
| AGGAAAATGTGGGGGTTTGG+TGG | + | chr3_4:41283538-41283557 | Msa0500720:exon | 50.0% | |
| GAAGCCTGATTACAAGGCAG+GGG | + | chr3_4:41284066-41284085 | Msa0500720:intron | 50.0% | |
| CTGATTACAAGGCAGGGGAT+GGG | + | chr3_4:41284071-41284090 | Msa0500720:intron | 50.0% | |
| CTGGTTGAAATAGCCACCAG+AGG | + | chr3_4:41284228-41284247 | Msa0500720:intron | 50.0% | |
| GTATACCGGATGATTACGGG+TGG | + | chr3_4:41284355-41284374 | Msa0500720:intron | 50.0% | |
| AGGTAAGGCTTAGCCTAACG+TGG | - | chr3_4:41284388-41284407 | None:intergenic | 50.0% | |
| GCCCTATTTGGAGATAGGCA+AGG | - | chr3_4:41284526-41284545 | None:intergenic | 50.0% | |
| AATGAGCCAAGTGGCTCACT+GGG | - | chr3_4:41284825-41284844 | None:intergenic | 50.0% | |
| TTGGCTCATTCCCATCCCTA+TGG | + | chr3_4:41284835-41284854 | Msa0500720:intron | 50.0% | |
| CACACTCCCCACCAATTATC+TGG | - | chr3_4:41285716-41285735 | None:intergenic | 50.0% | |
| GAAGCATGGATGGCAAGTTG+GGG | - | chr3_4:41285906-41285925 | None:intergenic | 50.0% | |
| AGCGGTAGTTAACTACCGCT+GGG | + | chr3_4:41286068-41286087 | Msa0500720:intron | 50.0% | |
| AATCGCAGCGTGCAGAGTAT+TGG | + | chr3_4:41286445-41286464 | Msa0500720:CDS | 50.0% | |
| ! | CGCCAAGGTCTTTTAGTCGA+TGG | - | chr3_4:41286674-41286693 | None:intergenic | 50.0% |
| TGGAGTTCCTCTCCTCATGT+AGG | + | chr3_4:41286714-41286733 | Msa0500720:CDS | 50.0% | |
| AGACGAGATACTGGGCATAG+AGG | + | chr3_4:41287093-41287112 | Msa0500720:CDS | 50.0% | |
| GACGAGATACTGGGCATAGA+GGG | + | chr3_4:41287094-41287113 | Msa0500720:CDS | 50.0% | |
| CTGATCCTTTCTCTGAGCTG+AGG | + | chr3_4:41287134-41287153 | Msa0500720:CDS | 50.0% | |
| GCTTTCCTCAGCTCAGAGAA+AGG | - | chr3_4:41287142-41287161 | None:intergenic | 50.0% | |
| ! | ATTTGCGTTGATGCTCGGAC+GGG | - | chr3_4:41287305-41287324 | None:intergenic | 50.0% |
| ! | CATTTGCGTTGATGCTCGGA+CGG | - | chr3_4:41287306-41287325 | None:intergenic | 50.0% |
| GTCCGAGCATCAACGCAAAT+GGG | + | chr3_4:41287305-41287324 | Msa0500720:CDS | 50.0% | |
| TCCGAGCATCAACGCAAATG+GGG | + | chr3_4:41287306-41287325 | Msa0500720:CDS | 50.0% | |
| ! | ACCCCATTTGCGTTGATGCT+CGG | - | chr3_4:41287310-41287329 | None:intergenic | 50.0% |
| TCCCAATCCTCGACTGTCTT+GGG | - | chr3_4:41287364-41287383 | None:intergenic | 50.0% | |
| ATCCCAATCCTCGACTGTCT+TGG | - | chr3_4:41287365-41287384 | None:intergenic | 50.0% | |
| CCATCCCCTGCCTTGTAATC+AGG | - | chr3_4:41284073-41284092 | None:intergenic | 55.0% | |
| CCTGATTACAAGGCAGGGGA+TGG | + | chr3_4:41284070-41284089 | Msa0500720:intron | 55.0% | |
| GGGTGGAAATGAGCCACGTT+AGG | + | chr3_4:41284372-41284391 | Msa0500720:intron | 55.0% | |
| ATGAGCCAAGTGGCTCACTG+GGG | - | chr3_4:41284824-41284843 | None:intergenic | 55.0% | |
| GAATGAGCCAAGTGGCTCAC+TGG | - | chr3_4:41284826-41284845 | None:intergenic | 55.0% | |
| AGGGATGGGAATGAGCCAAG+TGG | - | chr3_4:41284834-41284853 | None:intergenic | 55.0% | |
| CAGCGGTAGTTAACTACCGC+TGG | - | chr3_4:41286067-41286086 | None:intergenic | 55.0% | |
| CAGCGGTAGTTAACTACCGC+TGG | + | chr3_4:41286067-41286086 | Msa0500720:intron | 55.0% | |
| GCGGTAGTTAACTACCGCTG+GGG | + | chr3_4:41286069-41286088 | Msa0500720:intron | 55.0% | |
| CGGTAGTTAACTACCGCTGG+GGG | + | chr3_4:41286070-41286089 | Msa0500720:intron | 55.0% | |
| CCAGTTTGACATCTCCGCCA+AGG | - | chr3_4:41286689-41286708 | None:intergenic | 55.0% | |
| CCTTGGCGGAGATGTCAAAC+TGG | + | chr3_4:41286686-41286705 | Msa0500720:CDS | 55.0% | |
| TCGGAGCAACAGCAAAACCC+TGG | - | chr3_4:41287186-41287205 | None:intergenic | 55.0% | |
| CGTCCGAGCATCAACGCAAA+TGG | + | chr3_4:41287304-41287323 | Msa0500720:CDS | 55.0% | |
| TTGTGTCCCCAAGACAGTCG+AGG | + | chr3_4:41287354-41287373 | Msa0500720:CDS | 55.0% | |
| TCCCCAAGACAGTCGAGGAT+TGG | + | chr3_4:41287359-41287378 | Msa0500720:CDS | 55.0% | |
| CCCAATCCTCGACTGTCTTG+GGG | - | chr3_4:41287363-41287382 | None:intergenic | 55.0% | |
| CCCCAAGACAGTCGAGGATT+GGG | + | chr3_4:41287360-41287379 | Msa0500720:CDS | 55.0% | |
| CAGTCGAGGATTGGGATGTC+AGG | + | chr3_4:41287368-41287387 | Msa0500720:CDS | 55.0% | |
| CATAGCCCCAGTGAGCCACT+TGG | + | chr3_4:41284816-41284835 | Msa0500720:intron | 60.0% | |
| GGCAGCAGTTAACTGCCGCT+GGG | - | chr3_4:41286028-41286047 | None:intergenic | 60.0% | |
| CAGCGGCAGTTAACTGCTGC+CGG | + | chr3_4:41286027-41286046 | Msa0500720:intron | 60.0% | |
| ! | GCAGGGGATGGGTTCCATCC+AGG | + | chr3_4:41284082-41284101 | Msa0500720:intron | 65.0% |
| GGGTGACTCGTCGATCCCGA+AGG | + | chr3_4:41284669-41284688 | Msa0500720:intron | 65.0% | |
| CGGCAGCAGTTAACTGCCGC+TGG | - | chr3_4:41286029-41286048 | None:intergenic | 65.0% | |
| ! | GCGTTGATGCTCGGACGGGT+GGG | - | chr3_4:41287301-41287320 | None:intergenic | 65.0% |
| ! | TGCGTTGATGCTCGGACGGG+TGG | - | chr3_4:41287302-41287321 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41283184 | 41287748 | 41283184 | ID=Msa0500720;Name=Msa0500720 |
| chr3_4 | mRNA | 41283184 | 41287748 | 41283184 | ID=Msa0500720-mRNA-1;Parent=Msa0500720;Name=Msa0500720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=360|1|1|1|1|1|7|268|406 |
| chr3_4 | exon | 41283184 | 41283725 | 41283184 | ID=Msa0500720-mRNA-1:exon:8554;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41284889 | 41284946 | 41284889 | ID=Msa0500720-mRNA-1:exon:8555;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41285530 | 41285610 | 41285530 | ID=Msa0500720-mRNA-1:exon:8556;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41285717 | 41285749 | 41285717 | ID=Msa0500720-mRNA-1:exon:8557;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41286249 | 41286488 | 41286249 | ID=Msa0500720-mRNA-1:exon:8558;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41286594 | 41286735 | 41286594 | ID=Msa0500720-mRNA-1:exon:8559;Parent=Msa0500720-mRNA-1 |
| chr3_4 | exon | 41286996 | 41287748 | 41286996 | ID=Msa0500720-mRNA-1:exon:8560;Parent=Msa0500720-mRNA-1 |
| chr3_4 | five_prime_UTR | 41283184 | 41283543 | 41283184 | ID=Msa0500720-mRNA-1:five_prime_utr;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41283544 | 41283725 | 41283544 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41284889 | 41284946 | 41284889 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41285530 | 41285610 | 41285530 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41285717 | 41285749 | 41285717 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41286249 | 41286488 | 41286249 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41286594 | 41286735 | 41286594 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | CDS | 41286996 | 41287480 | 41286996 | ID=Msa0500720-mRNA-1:cds;Parent=Msa0500720-mRNA-1 |
| chr3_4 | three_prime_UTR | 41287481 | 41287748 | 41287481 | ID=Msa0500720-mRNA-1:three_prime_utr;Parent=Msa0500720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
