AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385090 MtrunA17_Chr3g0142381 99.632 543 2 0 1 543 1 543 0.0 1109
Msa0385090 MtrunA17_Chr3g0130621 31.214 346 206 10 69 405 26 348 8.32e-36 139
Msa0385090 MtrunA17_Chr3g0130621 29.739 306 187 7 30 329 94 377 2.36e-33 132
Msa0385090 MtrunA17_Chr3g0130621 28.313 332 198 11 47 365 58 362 6.44e-26 110
Msa0385090 MtrunA17_Chr8g0384631 27.941 272 174 4 43 314 37 286 9.11e-33 129
Msa0385090 MtrunA17_Chr8g0384631 28.618 304 182 10 86 379 26 304 1.46e-23 102
Msa0385090 MtrunA17_Chr8g0362061 26.343 391 226 13 40 399 269 628 1.60e-24 108
Msa0385090 MtrunA17_Chr8g0362061 27.179 195 126 5 220 404 276 464 5.16e-16 81.6
Msa0385090 MtrunA17_Chr4g0013271 26.854 391 237 15 39 406 49 413 5.09e-24 107
Msa0385090 MtrunA17_Chr4g0013271 28.409 264 156 8 58 310 173 414 5.66e-16 81.6
Msa0385090 MtrunA17_Chr1g0167471 26.873 387 231 14 39 399 257 617 1.76e-23 105
Msa0385090 MtrunA17_Chr1g0167471 25.633 316 181 13 118 405 282 571 1.90e-12 70.1
Msa0385090 MtrunA17_Chr7g0244411 26.649 379 225 14 39 392 247 597 2.86e-23 104
Msa0385090 MtrunA17_Chr7g0244411 26.692 266 159 11 47 299 361 603 1.02e-17 87.0
Msa0385090 MtrunA17_Chr7g0244411 27.083 192 124 5 220 401 255 440 2.63e-13 73.2
Msa0385090 MtrunA17_Chr1g0202151 26.579 380 231 13 43 399 266 620 4.95e-23 103
Msa0385090 MtrunA17_Chr1g0202151 25.000 192 128 5 220 401 270 455 8.87e-14 74.7
Msa0385090 MtrunA17_Chr1g0202151 27.572 243 131 9 20 244 405 620 2.46e-12 70.1
Msa0385090 MtrunA17_Chr3g0123301 29.779 272 158 8 56 310 132 387 5.65e-23 102
Msa0385090 MtrunA17_Chr3g0123301 27.742 310 182 12 114 405 150 435 2.85e-18 88.2
Msa0385090 MtrunA17_Chr3g0123301 25.000 240 153 8 52 277 306 532 2.40e-11 66.2
Msa0385090 MtrunA17_Chr3g0123301 22.034 295 177 6 47 296 189 475 7.87e-11 64.7
Msa0385090 MtrunA17_Chr3g0094741 26.649 379 225 14 47 399 310 661 1.24e-22 102
Msa0385090 MtrunA17_Chr3g0094741 25.521 192 127 4 220 401 310 495 2.29e-15 79.7
Msa0385090 MtrunA17_Chr6g0457381 30.952 252 145 9 39 289 134 357 3.78e-22 98.6
Msa0385090 MtrunA17_Chr6g0457381 26.727 333 217 10 82 405 8 322 7.85e-21 94.7
Msa0385090 MtrunA17_Chr6g0457381 26.829 369 224 13 58 401 38 385 5.47e-20 92.4
Msa0385090 MtrunA17_Chr6g0457381 27.869 305 175 11 20 311 55 327 8.89e-20 91.7
Msa0385090 MtrunA17_Chr6g0457381 27.758 281 182 7 130 405 4 268 5.30e-19 89.4
Msa0385090 MtrunA17_Chr6g0457381 32.143 196 117 7 57 244 196 383 1.08e-17 85.5
Msa0385090 MtrunA17_Chr5g0442001 26.302 384 223 15 45 399 298 650 4.73e-22 100
Msa0385090 MtrunA17_Chr5g0442001 27.027 259 155 6 41 283 397 637 5.08e-18 88.2
Msa0385090 MtrunA17_Chr5g0442001 27.083 192 124 4 220 401 300 485 1.03e-16 84.0
Msa0385090 MtrunA17_Chr6g0463421 25.459 381 236 13 42 399 262 617 7.21e-21 97.1
Msa0385090 MtrunA17_Chr6g0463421 28.646 192 121 5 220 401 267 452 1.02e-15 80.9
Msa0385090 MtrunA17_Chr7g0253611 27.719 285 153 9 47 309 177 430 8.64e-20 93.6
Msa0385090 MtrunA17_Chr7g0253611 24.107 336 183 9 75 401 151 423 3.48e-15 79.0
Msa0385090 MtrunA17_Chr3g0109811 23.016 378 242 12 45 399 293 644 7.64e-19 90.5
Msa0385090 MtrunA17_Chr3g0109811 30.126 239 138 8 198 424 279 500 7.14e-17 84.3
Msa0385090 MtrunA17_Chr5g0415871 26.257 358 214 13 65 399 53 383 9.05e-19 88.6
Msa0385090 MtrunA17_Chr5g0415871 27.138 269 161 9 78 332 15 262 7.00e-14 73.6
Msa0385090 MtrunA17_Chr7g0220131 25.854 410 227 17 43 407 42 419 2.38e-16 81.6
Msa0385090 MtrunA17_Chr7g0220131 23.836 365 217 15 80 405 24 366 3.51e-12 68.6
Msa0385090 MtrunA17_Chr3g0140201 29.339 242 134 9 61 275 102 333 1.65e-15 79.3
Msa0385090 MtrunA17_Chr7g0239601 25.434 173 114 2 105 277 32 189 6.19e-15 73.9
Msa0385090 MtrunA17_Chr7g0239601 28.495 186 119 6 224 402 32 210 1.24e-14 73.2
Msa0385090 MtrunA17_Chr7g0239601 30.939 181 107 4 65 244 44 207 2.73e-14 72.0
Msa0385090 MtrunA17_Chr2g0317861 27.152 302 182 9 20 310 182 456 4.69e-14 74.7
Msa0385090 MtrunA17_Chr3g0130871 24.925 333 208 12 95 403 15 329 2.86e-12 68.2
Msa0385090 MtrunA17_Chr3g0130871 27.165 254 137 9 47 275 74 304 7.34e-12 66.6
Msa0385090 MtrunA17_Chr5g0404371 25.962 312 138 10 61 284 121 427 4.32e-12 68.2
Msa0385090 MtrunA17_Chr3g0112381 35.922 103 62 2 45 145 27 127 1.40e-11 63.2
Msa0385090 MtrunA17_Chr7g0233601 27.715 267 162 8 57 315 151 394 2.54e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385090 AT1G19880.1 68.545 550 150 8 1 543 5 538 0.0 745
Msa0385090 AT5G63860.1 31.322 348 208 10 67 405 24 349 4.00e-34 134
Msa0385090 AT5G63860.1 27.972 286 183 5 30 314 94 357 9.33e-31 125
Msa0385090 AT5G63860.1 26.923 182 121 5 231 405 17 193 1.79e-12 70.1
Msa0385090 AT5G16040.1 27.545 334 212 11 82 405 10 323 2.72e-25 108
Msa0385090 AT5G16040.1 29.719 249 148 9 39 287 135 356 4.35e-20 92.8
Msa0385090 AT5G16040.1 27.704 379 212 16 56 401 38 387 2.27e-19 90.9
Msa0385090 AT5G16040.1 27.437 277 161 9 46 311 81 328 3.40e-19 90.1
Msa0385090 AT3G23270.1 27.273 374 221 13 43 392 238 584 1.71e-23 105
Msa0385090 AT3G23270.2 27.273 374 221 13 43 392 242 588 1.72e-23 105
Msa0385090 AT3G02510.1 25.581 387 254 11 82 457 10 373 4.87e-23 101
Msa0385090 AT3G02510.1 28.623 276 157 9 47 311 82 328 2.90e-20 93.6
Msa0385090 AT3G02510.1 28.042 378 210 16 57 401 39 387 1.35e-18 88.6
Msa0385090 AT4G14368.2 26.738 374 223 14 43 392 255 601 5.68e-23 103
Msa0385090 AT4G14368.2 27.907 215 114 7 47 244 418 608 1.79e-12 70.9
Msa0385090 AT4G14368.3 26.738 374 223 14 43 392 250 596 5.82e-23 103
Msa0385090 AT4G14368.3 27.907 215 114 7 47 244 413 603 1.85e-12 70.9
Msa0385090 AT5G11580.1 25.745 369 205 9 56 399 14 338 5.88e-23 103
Msa0385090 AT4G14368.4 26.738 374 223 14 43 392 257 603 5.90e-23 103
Msa0385090 AT4G14368.4 27.907 215 114 7 47 244 420 610 1.85e-12 70.9
Msa0385090 AT3G47660.3 26.902 368 228 12 47 399 287 628 9.94e-23 103
Msa0385090 AT3G47660.3 28.272 191 121 4 220 400 287 471 6.10e-15 78.6
Msa0385090 AT3G47660.5 26.902 368 228 12 47 399 287 628 9.94e-23 103
Msa0385090 AT3G47660.5 28.272 191 121 4 220 400 287 471 6.10e-15 78.6
Msa0385090 AT3G47660.1 26.902 368 228 12 47 399 290 631 1.09e-22 103
Msa0385090 AT3G47660.1 28.272 191 121 4 220 400 290 474 6.06e-15 78.6
Msa0385090 AT3G47660.2 26.902 368 228 12 47 399 290 631 1.10e-22 103
Msa0385090 AT3G47660.2 28.272 191 121 4 220 400 290 474 6.38e-15 78.6
Msa0385090 AT3G47660.7 26.902 368 228 12 47 399 145 486 1.72e-22 102
Msa0385090 AT3G47660.7 28.272 191 121 4 220 400 145 329 8.97e-15 78.2
Msa0385090 AT4G14368.1 26.738 374 223 14 43 392 257 603 1.78e-22 102
Msa0385090 AT4G14368.1 27.907 215 114 7 47 244 420 610 4.05e-12 69.7
Msa0385090 AT5G12350.1 25.469 373 235 11 47 399 299 648 2.78e-22 102
Msa0385090 AT5G12350.1 28.421 190 122 5 220 401 299 482 1.41e-16 84.0
Msa0385090 AT5G12350.1 28.372 215 115 6 58 256 465 656 1.08e-13 74.7
Msa0385090 AT3G47660.6 26.902 368 228 12 47 399 212 553 3.49e-22 101
Msa0385090 AT3G47660.6 28.272 191 121 4 220 400 212 396 1.29e-14 77.4
Msa0385090 AT3G47660.4 26.902 368 228 12 47 399 326 667 5.20e-22 100
Msa0385090 AT3G47660.4 28.272 191 121 4 220 400 326 510 1.70e-14 77.4
Msa0385090 AT5G16040.2 27.500 320 198 12 82 389 10 307 7.84e-22 97.4
Msa0385090 AT5G16040.2 28.400 250 143 8 46 284 81 305 7.82e-18 85.5
Msa0385090 AT5G60870.1 28.866 291 173 8 34 314 129 395 1.75e-21 97.8
Msa0385090 AT5G60870.1 25.862 348 183 11 75 405 46 335 5.75e-17 84.0
Msa0385090 AT5G60870.1 25.604 207 135 5 42 244 249 440 5.37e-12 68.6
Msa0385090 AT3G03790.1 27.056 377 204 13 47 399 174 503 2.30e-21 99.0
Msa0385090 AT3G03790.1 29.293 198 121 6 216 399 170 362 1.03e-13 74.7
Msa0385090 AT3G03790.1 26.971 241 147 7 79 310 152 372 2.13e-11 67.4
Msa0385090 AT5G19420.1 25.201 373 236 11 47 399 303 652 2.57e-21 99.0
Msa0385090 AT5G19420.1 28.421 190 122 5 220 401 303 486 1.58e-16 84.0
Msa0385090 AT3G03790.2 27.056 377 204 13 47 399 177 506 2.78e-21 99.0
Msa0385090 AT3G03790.2 29.293 198 121 6 216 399 173 365 1.06e-13 74.7
Msa0385090 AT3G03790.2 26.939 245 150 7 75 310 151 375 1.70e-11 67.8
Msa0385090 AT3G02510.3 31.660 259 143 12 31 287 72 298 2.84e-21 95.5
Msa0385090 AT3G02510.3 28.623 276 157 9 47 311 24 270 1.10e-20 94.0
Msa0385090 AT3G02510.3 27.606 355 197 15 80 401 2 329 5.95e-17 82.8
Msa0385090 AT3G02510.3 26.113 337 215 12 132 457 2 315 1.59e-14 75.5
Msa0385090 AT3G02510.3 29.592 196 123 6 57 244 139 327 3.02e-14 74.7
Msa0385090 AT5G19420.2 25.201 373 236 11 47 399 337 686 3.40e-21 98.6
Msa0385090 AT5G19420.2 28.421 190 122 5 220 401 337 520 1.80e-16 83.6
Msa0385090 AT3G03790.3 27.056 377 204 13 47 399 177 506 4.47e-21 98.2
Msa0385090 AT3G03790.3 29.293 198 121 6 216 399 173 365 1.48e-13 74.3
Msa0385090 AT3G03790.3 26.939 245 150 7 75 310 151 375 2.01e-11 67.4
Msa0385090 AT3G26100.3 30.182 275 153 10 56 310 29 284 8.06e-21 95.5
Msa0385090 AT3G26100.3 24.737 380 198 12 50 380 89 429 6.04e-15 77.4
Msa0385090 AT3G26100.4 30.182 275 153 10 56 310 29 284 8.06e-21 95.5
Msa0385090 AT3G26100.4 24.737 380 198 12 50 380 89 429 6.04e-15 77.4
Msa0385090 AT3G26100.1 30.182 275 153 10 56 310 29 284 8.06e-21 95.5
Msa0385090 AT3G26100.1 24.737 380 198 12 50 380 89 429 6.04e-15 77.4
Msa0385090 AT3G26100.5 30.182 275 153 10 56 310 129 384 8.69e-21 96.3
Msa0385090 AT3G26100.5 24.737 380 198 12 50 380 189 529 8.38e-15 77.8
Msa0385090 AT3G26100.6 30.182 275 153 10 56 310 129 384 8.69e-21 96.3
Msa0385090 AT3G26100.6 24.737 380 198 12 50 380 189 529 8.38e-15 77.8
Msa0385090 AT3G26100.2 30.182 275 153 10 56 310 129 384 8.69e-21 96.3
Msa0385090 AT3G26100.2 24.737 380 198 12 50 380 189 529 8.38e-15 77.8
Msa0385090 AT5G19420.3 25.410 366 230 11 47 392 303 645 1.52e-20 96.3
Msa0385090 AT5G19420.3 28.421 190 122 5 220 401 303 486 4.06e-16 82.4
Msa0385090 AT5G19420.3 30.814 172 96 4 77 244 500 652 3.40e-13 73.2
Msa0385090 AT5G42140.2 25.401 374 229 14 43 392 264 611 3.76e-20 95.1
Msa0385090 AT5G42140.2 25.000 192 128 5 220 401 268 453 1.49e-13 74.3
Msa0385090 AT5G42140.2 27.273 242 133 8 20 244 403 618 5.82e-12 69.3
Msa0385090 AT5G42140.1 25.401 374 229 14 43 392 264 611 3.76e-20 95.1
Msa0385090 AT5G42140.1 25.000 192 128 5 220 401 268 453 1.49e-13 74.3
Msa0385090 AT5G42140.1 27.273 242 133 8 20 244 403 618 5.82e-12 69.3
Msa0385090 AT5G60870.2 28.956 297 172 9 34 314 129 402 4.72e-20 93.6
Msa0385090 AT5G60870.2 25.862 348 183 11 75 405 46 335 9.16e-17 83.2
Msa0385090 AT3G02510.2 26.498 317 205 9 82 389 10 307 5.11e-20 91.3
Msa0385090 AT3G02510.2 29.719 249 139 8 47 284 82 305 2.57e-19 89.4
Msa0385090 AT1G76950.1 26.053 380 235 11 43 399 268 624 1.34e-19 93.6
Msa0385090 AT1G76950.1 26.562 192 126 5 220 401 272 458 3.13e-15 79.7
Msa0385090 AT1G69710.2 26.615 387 216 15 47 399 278 630 1.06e-18 90.5
Msa0385090 AT1G69710.2 27.848 237 147 6 198 424 263 485 5.23e-11 66.2
Msa0385090 AT1G69710.1 26.615 387 216 15 47 399 291 643 1.25e-18 90.5
Msa0385090 AT1G69710.1 27.848 237 147 6 198 424 276 498 5.82e-11 65.9
Msa0385090 AT3G55580.1 27.626 257 146 6 48 277 222 465 2.34e-17 85.5
Msa0385090 AT3G55580.1 28.452 239 121 7 101 310 225 442 2.34e-12 69.7
Msa0385090 AT1G65920.2 23.969 388 246 10 41 406 231 591 2.40e-17 86.3
Msa0385090 AT1G65920.1 23.969 388 246 10 41 406 277 637 3.13e-17 85.9
Msa0385090 AT1G27060.1 30.392 204 125 5 57 259 49 236 3.41e-17 84.0
Msa0385090 AT1G27060.1 26.100 341 209 10 78 405 16 326 1.07e-13 73.6
Msa0385090 AT3G15430.6 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.6 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT3G15430.4 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.4 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT3G15430.2 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.2 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT3G15430.3 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.3 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT3G15430.5 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.5 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT3G15430.1 27.007 274 171 7 44 310 204 455 3.65e-17 84.7
Msa0385090 AT3G15430.1 26.284 331 181 8 77 405 182 451 3.03e-15 79.0
Msa0385090 AT5G60870.4 25.862 348 183 11 75 405 46 335 5.79e-17 83.6
Msa0385090 AT5G60870.4 28.070 285 172 8 34 308 129 390 1.03e-16 82.8
Msa0385090 AT3G02300.2 24.528 371 225 13 71 405 25 376 1.18e-16 83.2
Msa0385090 AT3G02300.2 25.325 462 276 19 41 464 50 480 8.63e-16 80.5
Msa0385090 AT3G02300.1 24.528 371 225 13 71 405 14 365 1.19e-16 83.2
Msa0385090 AT3G02300.1 25.325 462 276 19 41 464 39 469 8.28e-16 80.5
Msa0385090 AT5G08710.1 26.154 390 238 14 42 402 65 433 8.98e-16 80.1
Msa0385090 AT5G60870.3 26.695 236 142 6 88 314 13 226 2.50e-15 77.0
Msa0385090 AT5G60870.3 25.604 207 135 5 42 244 80 271 1.81e-12 68.6
Msa0385090 AT3G53830.3 33.158 190 106 5 59 244 295 467 4.01e-15 78.2
Msa0385090 AT3G53830.3 25.070 359 175 13 45 401 203 469 4.19e-15 78.2
Msa0385090 AT3G53830.4 32.632 190 107 4 59 244 323 495 5.45e-15 78.2
Msa0385090 AT3G53830.4 25.140 358 174 13 46 401 232 497 7.56e-15 77.8
Msa0385090 AT5G48330.2 24.324 370 232 13 69 400 93 452 2.82e-12 69.3
Msa0385090 AT5G08710.2 33.051 236 138 7 82 311 54 275 7.73e-12 67.4
Msa0385090 AT3G53830.1 26.724 232 128 7 46 276 204 394 9.96e-12 67.4
Msa0385090 AT5G48330.1 23.989 371 233 13 69 400 93 453 1.03e-11 67.8
Msa0385090 AT3G53830.2 26.724 232 128 7 46 276 232 422 1.27e-11 67.4

Find 195 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTAAGTCATGACTTTC+TGG 0.129930 3_1:-88542779 None:intergenic
CTAAGCCTCTAATGGATTTA+AGG 0.137896 3_1:+88539592 Msa0385090:CDS
TAACGGTCAGAAAGTTATTT+TGG 0.174450 3_1:-88536033 None:intergenic
AACAGTGTTGCTTGTGGTTT+GGG 0.263671 3_1:+88540615 Msa0385090:intron
TAATTTCACAGAACTGTCTT+TGG 0.265905 3_1:-88538311 None:intergenic
AATATACGATGCATGGATTC+AGG 0.280176 3_1:+88539746 Msa0385090:CDS
CTCAAGTATATCCACCTTCT+TGG 0.292087 3_1:-88539950 None:intergenic
CATAACCTTAAATCCATTAG+AGG 0.299264 3_1:-88539597 None:intergenic
CGAGCAATAGCTTCCCTTGC+TGG 0.299714 3_1:+88538358 Msa0385090:CDS
AAACAAGAGTTCACCTCCTT+TGG 0.302920 3_1:-88536128 None:intergenic
CCGACACAAGACAGCGAATA+GGG 0.309068 3_1:-88537279 None:intergenic
CTTAAATCCATTAGAGGCTT+AGG 0.314409 3_1:-88539591 None:intergenic
TTAGAACTGCTGTTATTTGC+AGG 0.316206 3_1:-88542718 None:intergenic
AGGTCACCAGCCGCTGATTA+AGG 0.316326 3_1:-88542977 None:intergenic
TAAAACTCAAGTGCCTAAAA+AGG 0.316886 3_1:+88542444 Msa0385090:CDS
ACTGCTGGGCTTCCACAGTA+TGG 0.317692 3_1:+88537496 Msa0385090:CDS
TTCCACAGTATGGGCAGCTT+GGG 0.334508 3_1:+88537506 Msa0385090:CDS
ATGAGAGGAGAGAAGGAGAT+TGG 0.334653 3_1:-88535914 None:intergenic
AAACAGTGTTGCTTGTGGTT+TGG 0.350838 3_1:+88540614 Msa0385090:intron
CTTCCACAGTATGGGCAGCT+TGG 0.357567 3_1:+88537505 Msa0385090:CDS
CCGCTGATTAAGGTTCTATT+AGG 0.370665 3_1:-88542967 None:intergenic
AGGTCCTGCCGAGGGTAATT+TGG 0.372205 3_1:+88536189 Msa0385090:CDS
TGATTCCTCGTGCATAAGTT+GGG 0.374540 3_1:+88539793 Msa0385090:CDS
TGTTGTGCAGAAAGGGCAAC+TGG 0.376822 3_1:+88536624 Msa0385090:intron
GATGGAAATTCCCTAGCATT+TGG 0.384805 3_1:+88536939 Msa0385090:CDS
AGGAATCAGCCCCAACAAAA+TGG 0.390112 3_1:-88539778 None:intergenic
AGGTGGGGTTATGGTGGTTA+TGG 0.398844 3_1:+88538615 Msa0385090:intron
ATTATGATTGCTAGGACTGC+TGG 0.399237 3_1:+88537481 Msa0385090:intron
GTGAATTCTGCTTGTACTGC+AGG 0.412241 3_1:+88538877 Msa0385090:CDS
GAGATACCATTCAGCGTGAT+AGG 0.414029 3_1:+88536653 Msa0385090:CDS
AATAGCGAGGATGAAGTTAA+TGG 0.414274 3_1:+88542580 Msa0385090:CDS
CATGTGTACAGGTGGGGTTA+TGG 0.421071 3_1:+88538606 Msa0385090:intron
GATGTACCCTAAGCCTCTAA+TGG 0.423368 3_1:+88539584 Msa0385090:CDS
CTGATTCCTCGTGCATAAGT+TGG 0.424200 3_1:+88539792 Msa0385090:CDS
AACAAGAGTTCACCTCCTTT+GGG 0.425944 3_1:-88536127 None:intergenic
CCTCTGTAACAACTACAGTA+TGG 0.436175 3_1:-88536917 None:intergenic
ATTCTGTAGGCTAGGACATC+GGG 0.439491 3_1:+88538765 Msa0385090:intron
TACACATACTTCTGTCCATT+AGG 0.440187 3_1:-88539848 None:intergenic
CTGGAGGGCAGCTGTATATG+TGG 0.440860 3_1:+88539532 Msa0385090:CDS
AAAATTGTTCAAGCTGGAGC+TGG 0.440882 3_1:+88536888 Msa0385090:CDS
TAAAGAACACCGGTGATGAC+TGG 0.444787 3_1:+88539562 Msa0385090:CDS
TTCTGGCAAGGGCCGGGGTA+AGG 0.449517 3_1:+88542639 Msa0385090:CDS
AATTCTGTAGGCTAGGACAT+CGG 0.450272 3_1:+88538764 Msa0385090:intron
TATTGCTGATAGACTTGATC+AGG 0.451116 3_1:+88540668 Msa0385090:CDS
CTCTTACCAGTTGACTTCAC+TGG 0.451296 3_1:-88542748 None:intergenic
CCTGATGCAATTATTTCAGC+AGG 0.451970 3_1:+88538850 Msa0385090:CDS
ATGAAGTGAAGAGGGTGTTA+AGG 0.456364 3_1:-88535951 None:intergenic
AATTGCAATTAATAGTTAGC+TGG 0.460870 3_1:-88542837 None:intergenic
TTGAAGGGCGTTGCTATACA+TGG 0.462322 3_1:+88536442 Msa0385090:CDS
AAACTAAGTCATGACTTTCT+GGG 0.463390 3_1:-88542778 None:intergenic
TCTTCTCCAGTGAAGTCAAC+TGG 0.463789 3_1:+88542742 Msa0385090:CDS
GGGGTTATGGTGGTTATGGA+AGG 0.464165 3_1:+88538619 Msa0385090:CDS
TCAAGTATATCCACCTTCTT+GGG 0.467755 3_1:-88539949 None:intergenic
TGAAGAGGGTGTTAAGGAAA+TGG 0.468015 3_1:-88535945 None:intergenic
GAGCTGGGATACGGACCTAA+TGG 0.470385 3_1:+88539833 Msa0385090:CDS
GCCGACGAGAGGACGGAGGC+GGG 0.472359 3_1:-88536221 None:intergenic
GAGTCTGAGGGTAAAGGCTC+TGG 0.474002 3_1:+88542676 Msa0385090:CDS
TTAAATCCATTAGAGGCTTA+GGG 0.474350 3_1:-88539590 None:intergenic
GATGAGAAATGAAGTGAAGA+GGG 0.474646 3_1:-88535959 None:intergenic
AAAGGCTCTGGCCGAGGACG+TGG 0.475426 3_1:+88542688 Msa0385090:CDS
TGCCGACGAGAGGACGGAGG+CGG 0.476627 3_1:-88536222 None:intergenic
TTGTGGTTTGGGTCATTCCA+TGG 0.477559 3_1:+88540626 Msa0385090:CDS
ACCCTCAGACTCCGACACTT+TGG 0.484222 3_1:-88542665 None:intergenic
TGCGTGGCATTGGACGTTGA+AGG 0.485102 3_1:+88536426 Msa0385090:CDS
TTTGGGTCATTCCATGGTTG+TGG 0.487755 3_1:+88540632 Msa0385090:CDS
GTCTTCAGCTGTTCCCAAGA+AGG 0.489874 3_1:+88539936 Msa0385090:CDS
TCCGACACAAGACAGCGAAT+AGG 0.491538 3_1:-88537280 None:intergenic
AGATACAAAATTGTTCAAGC+TGG 0.495929 3_1:+88536882 Msa0385090:intron
TTCGTGTCATTGCGTGGCAT+TGG 0.496071 3_1:+88536416 Msa0385090:CDS
TCATGCTCAGAATGGAGAGC+TGG 0.497285 3_1:+88539817 Msa0385090:CDS
CCTGCTGAAATAATTGCATC+AGG 0.498802 3_1:-88538850 None:intergenic
GTTTGTTCCATCCAAATGCT+AGG 0.499233 3_1:-88536950 None:intergenic
ACTGTAGTTGTTACAGAGGA+TGG 0.504285 3_1:+88536921 Msa0385090:CDS
AAAAGTTCTGGCAAGGGCCG+GGG 0.506111 3_1:+88542634 Msa0385090:CDS
ACGGATCTAACGGCTAGTAT+TGG 0.506979 3_1:-88535985 None:intergenic
ATATACGATGCATGGATTCA+GGG 0.509327 3_1:+88539747 Msa0385090:CDS
CAGTATGGGCAGCTTGGGCA+TGG 0.510523 3_1:+88537511 Msa0385090:CDS
GCGTGGCATTGGACGTTGAA+GGG 0.510601 3_1:+88536427 Msa0385090:CDS
GGGAAAGATGAGAGGAGAGA+AGG 0.512060 3_1:-88535921 None:intergenic
CGATACGTTGCATCGGGCTG+CGG 0.513309 3_1:+88536253 Msa0385090:CDS
TTAATCAGCGGCTGGTGACC+TGG 0.514638 3_1:+88542979 Msa0385090:three_prime_UTR
TTCTCAAACAGTGTTGCTTG+TGG 0.516140 3_1:+88540609 Msa0385090:intron
TTAAGGTTCTATTAGGCTGA+TGG 0.516173 3_1:-88542960 None:intergenic
TTATGATTGCTAGGACTGCT+GGG 0.519649 3_1:+88537482 Msa0385090:intron
CAGAATGGAGAGCTGGGATA+CGG 0.520391 3_1:+88539824 Msa0385090:CDS
CTGCAGCTTGATACACATGA+TGG 0.522680 3_1:+88541924 Msa0385090:intron
GAGCAATAGCTTCCCTTGCT+GGG 0.523599 3_1:+88538359 Msa0385090:CDS
AGCATTCGATACGTTGCATC+GGG 0.523617 3_1:+88536247 Msa0385090:CDS
ACGAGAGGACGGAGGCGGGA+AGG 0.524041 3_1:-88536217 None:intergenic
AGTTGGCCTATCACGCTGAA+TGG 0.524912 3_1:-88536659 None:intergenic
GAAGCTATTGCTCGAGGACG+TGG 0.526893 3_1:-88538349 None:intergenic
GAAATTCCCTAGCATTTGGA+TGG 0.527337 3_1:+88536943 Msa0385090:CDS
TGAAGTTAATGGTGAGGCTG+AGG 0.529067 3_1:+88542591 Msa0385090:CDS
CCCTATTCGCTGTCTTGTGT+CGG 0.529834 3_1:+88537279 Msa0385090:CDS
GACAATGGTTTCCCCAGCAA+GGG 0.529979 3_1:-88538371 None:intergenic
CAGAAAGGGCAACTGGGTCA+TGG 0.531028 3_1:+88536631 Msa0385090:intron
TGCTGATGCCGACGAGAGGA+CGG 0.531162 3_1:-88536228 None:intergenic
GAGGGTAAAGGCTCTGGCCG+AGG 0.531410 3_1:+88542682 Msa0385090:CDS
GTGTCGGAGTCTGAGGGTAA+AGG 0.532240 3_1:+88542670 Msa0385090:CDS
TACATCAGAAGTTGAGAAGA+AGG 0.535425 3_1:+88536084 Msa0385090:CDS
GGCTGATGGAAAACTGAAGA+AGG 0.537426 3_1:-88542946 None:intergenic
AAGAAGGTGGATATACTTGA+GGG 0.539093 3_1:+88539952 Msa0385090:CDS
CAGGAGCGCGACCACGTCCT+CGG 0.540964 3_1:-88542699 None:intergenic
CTGCTGGGCTTCCACAGTAT+GGG 0.542164 3_1:+88537497 Msa0385090:CDS
TGGAGGGCAGCTGTATATGT+GGG 0.546229 3_1:+88539533 Msa0385090:CDS
ATCCAAAGTGTCGGAGTCTG+AGG 0.546995 3_1:+88542663 Msa0385090:CDS
AGATGAGAAATGAAGTGAAG+AGG 0.548620 3_1:-88535960 None:intergenic
GAGACCAAATTACCCTCGGC+AGG 0.551043 3_1:-88536193 None:intergenic
GCTAGGACATCGGGAGCAGA+AGG 0.552867 3_1:+88538774 Msa0385090:CDS
TTTGTTCCATCCAAATGCTA+GGG 0.553881 3_1:-88536949 None:intergenic
AGTTGGGGTCATGCTCAGAA+TGG 0.554049 3_1:+88539809 Msa0385090:CDS
GAGGGTGTTAAGGAAATGGC+GGG 0.554499 3_1:-88535941 None:intergenic
CAAGAAGGTGGATATACTTG+AGG 0.555096 3_1:+88539951 Msa0385090:CDS
ATAGAACCTTAATCAGCGGC+TGG 0.555756 3_1:+88542971 Msa0385090:three_prime_UTR
CGGTTGGAATATACGATGCA+TGG 0.556512 3_1:+88539739 Msa0385090:CDS
TGACAATGGTTTCCCCAGCA+AGG 0.558824 3_1:-88538372 None:intergenic
GCATGTGGAACAAATCATAC+AGG 0.562044 3_1:+88538400 Msa0385090:CDS
GTGTACAGGTGGGGTTATGG+TGG 0.562157 3_1:+88538609 Msa0385090:intron
TGGAACAAACATGGACAGCT+AGG 0.566459 3_1:+88536963 Msa0385090:CDS
GAAAGTTCAGAAACCACAGT+TGG 0.572182 3_1:-88536676 None:intergenic
GTGAAGTCAACTGGTAAGAG+AGG 0.577873 3_1:+88542751 Msa0385090:CDS
AAATTGTTCAAGCTGGAGCT+GGG 0.578150 3_1:+88536889 Msa0385090:CDS
ACACTTTGGATGCCTTACCC+CGG 0.579617 3_1:-88542651 None:intergenic
GATATCGTTGGTCGTCGCAA+AGG 0.579977 3_1:+88536169 Msa0385090:CDS
CATGCTCAGAATGGAGAGCT+GGG 0.581451 3_1:+88539818 Msa0385090:CDS
ACCATTGTCAAGGTGGCATG+TGG 0.582156 3_1:+88538385 Msa0385090:CDS
AAACATGGACAGCTAGGTTC+CGG 0.582193 3_1:+88536969 Msa0385090:CDS
TGTGAAAATGACGGATCTAA+CGG 0.582429 3_1:-88535995 None:intergenic
TCCCGCCTCCGTCCTCTCGT+CGG 0.582568 3_1:+88536220 Msa0385090:CDS
TGAAGGGCGTTGCTATACAT+GGG 0.582917 3_1:+88536443 Msa0385090:CDS
AAGCTGACAGCTCAAAGAAG+AGG 0.584051 3_1:+88542497 Msa0385090:CDS
TCCACATGCCACCTTGACAA+TGG 0.585101 3_1:-88538386 None:intergenic
TGCTGGGGAAACCATTGTCA+AGG 0.586213 3_1:+88538375 Msa0385090:CDS
TCGTCGCAAAGGTCCTGCCG+AGG 0.586450 3_1:+88536180 Msa0385090:CDS
CGAATGCTGATGCCGACGAG+AGG 0.587089 3_1:-88536232 None:intergenic
AGAAGTTGAGAAGAAGGTCG+AGG 0.591344 3_1:+88536090 Msa0385090:CDS
AGGGTACATCCAGTCATCAC+CGG 0.591794 3_1:-88539571 None:intergenic
CAGCATTCGATACGTTGCAT+CGG 0.592841 3_1:+88536246 Msa0385090:CDS
GAAGGGCGTTGCTATACATG+GGG 0.593326 3_1:+88536444 Msa0385090:CDS
GAAATGGCGGGAAAGATGAG+AGG 0.594991 3_1:-88535929 None:intergenic
TATACGATGCATGGATTCAG+GGG 0.595200 3_1:+88539748 Msa0385090:CDS
AGACATTTCACCGTTCACTC+CGG 0.598445 3_1:-88536062 None:intergenic
AGAGGGTGTTAAGGAAATGG+CGG 0.600012 3_1:-88535942 None:intergenic
GTGTGGCTATCTTCAGTCGA+AGG 0.600472 3_1:+88537337 Msa0385090:CDS
CTCAGAAGAAGAGCAAGAAG+AGG 0.602271 3_1:+88542543 Msa0385090:CDS
GAGAATCAAGCTCCCAAAGG+AGG 0.604298 3_1:+88536115 Msa0385090:CDS
CGTCGCAAAGGTCCTGCCGA+GGG 0.610410 3_1:+88536181 Msa0385090:CDS
TGCTCTATCAACCACAACCA+TGG 0.611530 3_1:-88540643 None:intergenic
TTCATCAATAACATCTCACC+AGG 0.612461 3_1:-88542997 None:intergenic
TTCAGCTGTTCCCAAGAAGG+TGG 0.612636 3_1:+88539939 Msa0385090:CDS
GTTACTCTCGCCGGAGTGAA+CGG 0.612669 3_1:+88536052 Msa0385090:five_prime_UTR
GCCACGTGCTGGGATATCGT+TGG 0.616073 3_1:+88536157 Msa0385090:CDS
CGACACAAGACAGCGAATAG+GGG 0.616819 3_1:-88537278 None:intergenic
GTTCACTCCGGCGAGAGTAA+CGG 0.618782 3_1:-88536050 None:intergenic
GATTCCTCGTGCATAAGTTG+GGG 0.619534 3_1:+88539794 Msa0385090:CDS
TTGAGGGTATGCATGTAATG+AGG 0.620851 3_1:+88539968 Msa0385090:CDS
GCAGTGGCGGTGGATAAGAA+TGG 0.625432 3_1:+88538495 Msa0385090:intron
CGAGGATGAAGTTAATGGTG+AGG 0.626334 3_1:+88542585 Msa0385090:CDS
AGGAGAGACCAAATTACCCT+CGG 0.628341 3_1:-88536197 None:intergenic
GCAAGGGAAGCTATTGCTCG+AGG 0.628727 3_1:-88538355 None:intergenic
GGGTAAGGCATCCAAAGTGT+CGG 0.631380 3_1:+88542654 Msa0385090:CDS
TGCCCAAGCTGCCCATACTG+TGG 0.634362 3_1:-88537508 None:intergenic
TGCAGCTTCGTGTCATTGCG+TGG 0.634876 3_1:+88536410 Msa0385090:intron
GTTGTGCAGAAAGGGCAACT+GGG 0.636990 3_1:+88536625 Msa0385090:intron
ACACATGATGGCAAAGCTGT+TGG 0.637999 3_1:+88541936 Msa0385090:CDS
TCCAAAGTGTCGGAGTCTGA+GGG 0.639192 3_1:+88542664 Msa0385090:CDS
GCATTTGGATGGAACAAACA+TGG 0.639496 3_1:+88536954 Msa0385090:CDS
AGCAATAGCTTCCCTTGCTG+GGG 0.642390 3_1:+88538360 Msa0385090:CDS
TTTCTGACCGTTACTCTCGC+CGG 0.643681 3_1:+88536043 Msa0385090:five_prime_UTR
GATGGCAAAGCTGTTGGTGA+AGG 0.646025 3_1:+88541942 Msa0385090:CDS
GAAGAGAATCAAGCTCCCAA+AGG 0.653323 3_1:+88536112 Msa0385090:CDS
CCATACTGTAGTTGTTACAG+AGG 0.653376 3_1:+88536917 Msa0385090:CDS
TTTCGTAGCAACTCAAAATG+CGG 0.654154 3_1:+88542813 Msa0385090:three_prime_UTR
CCTAATAGAACCTTAATCAG+CGG 0.662077 3_1:+88542967 Msa0385090:three_prime_UTR
GAAGTTACATATGCTACATG+TGG 0.662656 3_1:+88537301 Msa0385090:CDS
GTTACATATGCTACATGTGG+TGG 0.668990 3_1:+88537304 Msa0385090:CDS
TGGGGAAACCATTGTCAAGG+TGG 0.671803 3_1:+88538378 Msa0385090:CDS
TCAGCGTGATAGGCCAACTG+TGG 0.672141 3_1:+88536663 Msa0385090:CDS
GCTGAAATAATTGCATCAGG+AGG 0.676604 3_1:-88538847 None:intergenic
GGAGGGCAGCTGTATATGTG+GGG 0.682771 3_1:+88539534 Msa0385090:CDS
TGGGGCAAAATAAAGAACAC+CGG 0.685495 3_1:+88539552 Msa0385090:CDS
TGAAGAAAGTGACAATAGCG+AGG 0.689085 3_1:+88542567 Msa0385090:CDS
TGATGCCGACGAGAGGACGG+AGG 0.696844 3_1:-88536225 None:intergenic
GAGGTTAAAACATCACGTGG+TGG 0.705714 3_1:+88542610 Msa0385090:CDS
TATTCGTGAAAATATCAACA+CGG 0.705910 3_1:-88538813 None:intergenic
GTGAAAATATCAACACGGCG+TGG 0.706015 3_1:-88538808 None:intergenic
ATACGATGCATGGATTCAGG+GGG 0.708960 3_1:+88539749 Msa0385090:CDS
GCTGAGGTTAAAACATCACG+TGG 0.716701 3_1:+88542607 Msa0385090:CDS
GATGTTATTGATGAAACTTG+AGG 0.723067 3_1:+88543005 Msa0385090:three_prime_UTR
ACCAACGATATCCCAGCACG+TGG 0.723780 3_1:-88536158 None:intergenic
ATGACCCCAACTTATGCACG+AGG 0.724767 3_1:-88539798 None:intergenic
GATACTACTACAGTGAGGTG+CGG 0.727168 3_1:-88535882 None:intergenic
AAGGGCGTTGCTATACATGG+GGG 0.736643 3_1:+88536445 Msa0385090:CDS
TGGGCATGGAACAGATAACG+AGG 0.759223 3_1:+88537525 Msa0385090:CDS
GCGCAGATACTACTACAGTG+AGG 0.793093 3_1:-88535887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATAAAAAAAAA+AGG - chr3_1:88538746-88538765 None:intergenic 0.0%
!!! TAGTTTTAGATATATATTAT+TGG + chr3_1:88537847-88537866 Msa0385090:intron 10.0%
!! TATAGAAAACAAAAATAATA+AGG - chr3_1:88538474-88538493 None:intergenic 10.0%
!! TTTATAAAATAAAATTCTGT+AGG + chr3_1:88538752-88538771 Msa0385090:intron 10.0%
!!! TCTTTTTAAAAAGAAAAATT+GGG + chr3_1:88539190-88539209 Msa0385090:intron 10.0%
!!! GAAATTTTTATTAATTTAAG+TGG + chr3_1:88539219-88539238 Msa0385090:intron 10.0%
!! AAATATATAATACTTTAATC+AGG - chr3_1:88539705-88539724 None:intergenic 10.0%
!! TTATATACACTTAATAAAAT+TGG - chr3_1:88540239-88540258 None:intergenic 10.0%
!! AAAAAAGATATATATAAGTT+AGG - chr3_1:88541898-88541917 None:intergenic 10.0%
!! TTAGAAAGAAAAATTGAATT+AGG + chr3_1:88535844-88535863 Msa0385090:five_prime_UTR 15.0%
!! TAGAAAGAAAAATTGAATTA+GGG + chr3_1:88535845-88535864 Msa0385090:five_prime_UTR 15.0%
!! AAAAAAATATGTGAAAATGA+CGG - chr3_1:88536007-88536026 None:intergenic 15.0%
!! AGAAACAATAACAATATAAA+TGG - chr3_1:88537183-88537202 None:intergenic 15.0%
!!! TTTTTTAAATTATGATTGCT+AGG + chr3_1:88537473-88537492 Msa0385090:intron 15.0%
!! AAATTACAAAACAATCAATT+AGG + chr3_1:88537902-88537921 Msa0385090:intron 15.0%
!! GATAATATGCTTAAATATAA+AGG + chr3_1:88538108-88538127 Msa0385090:intron 15.0%
!! TTATAAAAAAAAAAGGTAGT+TGG - chr3_1:88538739-88538758 None:intergenic 15.0%
!!! CTCTTTTTAAAAAGAAAAAT+TGG + chr3_1:88539189-88539208 Msa0385090:intron 15.0%
!! GGTAAAAATTTATATGTAAA+AGG - chr3_1:88539418-88539437 None:intergenic 15.0%
!! TAATAATGAAAAGTTATTAG+TGG + chr3_1:88541682-88541701 Msa0385090:intron 15.0%
!! AATAATGAAAAGTTATTAGT+GGG + chr3_1:88541683-88541702 Msa0385090:intron 15.0%
!!! TATTTTTCTTTTACAAGTTA+AGG + chr3_1:88542196-88542215 Msa0385090:intron 15.0%
!! AAAAATTAAAACAACAGAAT+GGG - chr3_1:88543031-88543050 None:intergenic 15.0%
!! AAAAAATTAAAACAACAGAA+TGG - chr3_1:88543032-88543051 None:intergenic 15.0%
!!! TGTTTGTGTTTTCAATTTTA+TGG + chr3_1:88536789-88536808 Msa0385090:intron 20.0%
!! TGACAAGAAATAATAACAAA+AGG - chr3_1:88536833-88536852 None:intergenic 20.0%
!! ACAGATTATTCTGTAAAATT+AGG + chr3_1:88537015-88537034 Msa0385090:intron 20.0%
!! CATTATTCAAATTCAAACAT+GGG - chr3_1:88537709-88537728 None:intergenic 20.0%
!! ACATTATTCAAATTCAAACA+TGG - chr3_1:88537710-88537729 None:intergenic 20.0%
!! TAGATATATATTATTGGACA+AGG + chr3_1:88537853-88537872 Msa0385090:intron 20.0%
!!! GCATGAACATATATTTTTTA+TGG - chr3_1:88538009-88538028 None:intergenic 20.0%
!! ATACAAACATGTATTATCAT+GGG - chr3_1:88538235-88538254 None:intergenic 20.0%
!! ATAAGGAATAGTAATATACA+AGG - chr3_1:88538457-88538476 None:intergenic 20.0%
!! TTTAAAAAGAAAAATTGGGA+AGG + chr3_1:88539194-88539213 Msa0385090:intron 20.0%
!! TTAAAAAGAAAAATTGGGAA+GGG + chr3_1:88539195-88539214 Msa0385090:intron 20.0%
!! ATGAATTATTTATCAAACCA+TGG - chr3_1:88539630-88539649 None:intergenic 20.0%
!!! ATATTTATTTTGGTAAACAG+CGG + chr3_1:88539719-88539738 Msa0385090:intron 20.0%
!! AATGTAGAAATTGAATCTAT+TGG + chr3_1:88540122-88540141 Msa0385090:intron 20.0%
!! ATGTAGAAATTGAATCTATT+GGG + chr3_1:88540123-88540142 Msa0385090:intron 20.0%
!!! TTTTTTATATAACAATGGAC+TGG + chr3_1:88540262-88540281 Msa0385090:intron 20.0%
!!! CATGATTTTGAAAATTTAGT+GGG + chr3_1:88540285-88540304 Msa0385090:intron 20.0%
!!! ATGATTTTGAAAATTTAGTG+GGG + chr3_1:88540286-88540305 Msa0385090:intron 20.0%
!!! GATAAGTAGTTGTTTATTTT+TGG - chr3_1:88540490-88540509 None:intergenic 20.0%
!!! ATTGTCTGATATTATGTTTT+AGG + chr3_1:88540767-88540786 Msa0385090:intron 20.0%
!! CTATTGGATAAGAAATAATA+GGG + chr3_1:88541533-88541552 Msa0385090:intron 20.0%
!! TCTATCTCTTGAATAAATTT+GGG + chr3_1:88541591-88541610 Msa0385090:intron 20.0%
!!! TTTTTAAGAGTATGTTTCAA+TGG + chr3_1:88542152-88542171 Msa0385090:intron 20.0%
!!! TGTTAATTTGTGTTTTTTGA+GGG - chr3_1:88542358-88542377 None:intergenic 20.0%
!!! TTTAAATTGTAACCCTTTTT+TGG + chr3_1:88542879-88542898 Msa0385090:three_prime_UTR 20.0%
!! TAGGCTATGTTTCATTTTAA+TGG + chr3_1:88537034-88537053 Msa0385090:intron 25.0%
!! GGTTTCTGAAAATTGTATTA+AGG + chr3_1:88537376-88537395 Msa0385090:intron 25.0%
! AATAATGTTATCCATTGTTG+AGG + chr3_1:88537722-88537741 Msa0385090:intron 25.0%
! ATATATATTATTGGACAAGG+AGG + chr3_1:88537856-88537875 Msa0385090:intron 25.0%
! TGAAATAAACTCATTCTACA+AGG - chr3_1:88538084-88538103 None:intergenic 25.0%
! AAAGAAAAAATAAAATGCCC+AGG - chr3_1:88538153-88538172 None:intergenic 25.0%
! CATACAAACATGTATTATCA+TGG - chr3_1:88538236-88538255 None:intergenic 25.0%
! ATAATACATGTTTGTATGTG+TGG + chr3_1:88538238-88538257 Msa0385090:intron 25.0%
!!! TTTTTGTTTTCTATATGCAG+TGG + chr3_1:88538479-88538498 Msa0385090:intron 25.0%
! AATTTGAGAATCCAAATTTG+AGG - chr3_1:88538687-88538706 None:intergenic 25.0%
! CAAATTTGGATTCTCAAATT+CGG + chr3_1:88538687-88538706 Msa0385090:intron 25.0%
! AAAATAAAATTCTGTAGGCT+AGG + chr3_1:88538757-88538776 Msa0385090:intron 25.0%
! TATTCGTGAAAATATCAACA+CGG - chr3_1:88538816-88538835 None:intergenic 25.0%
!!! GTGAACATTTTTTGAAAAGT+AGG - chr3_1:88538939-88538958 None:intergenic 25.0%
! AAATGATACTGATATCATGA+GGG + chr3_1:88539123-88539142 Msa0385090:intron 25.0%
! CATAATTCCTCAATAGTTAT+GGG - chr3_1:88539169-88539188 None:intergenic 25.0%
! GAAGGATATAAAAAAATGGT+CGG - chr3_1:88539439-88539458 None:intergenic 25.0%
! GCTTGAAGGATATAAAAAAA+TGG - chr3_1:88539443-88539462 None:intergenic 25.0%
! TGCTATATATAAAATACGTC+AGG + chr3_1:88539649-88539668 Msa0385090:intron 25.0%
!! AATCATAGTGTTGCTAAAAA+GGG - chr3_1:88539879-88539898 None:intergenic 25.0%
!! AAATCATAGTGTTGCTAAAA+AGG - chr3_1:88539880-88539899 None:intergenic 25.0%
! TTTCTACATTTGATAAGTTG+AGG - chr3_1:88540112-88540131 None:intergenic 25.0%
! ATTCAGTAGTTGAATTGTAA+TGG - chr3_1:88540164-88540183 None:intergenic 25.0%
!!! GCATGATTTTGAAAATTTAG+TGG + chr3_1:88540284-88540303 Msa0385090:intron 25.0%
! AGAATGTGAACATTCAAAAA+TGG - chr3_1:88540357-88540376 None:intergenic 25.0%
! TATAAACTGAAGATACTAAG+TGG - chr3_1:88540385-88540404 None:intergenic 25.0%
! TAGTATCTTCAGTTTATAAC+TGG + chr3_1:88540387-88540406 Msa0385090:intron 25.0%
!!! TAAGATTCTTTTTCAACAAG+AGG - chr3_1:88540544-88540563 None:intergenic 25.0%
! AGATCAATTCTCATTTATGT+CGG - chr3_1:88540576-88540595 None:intergenic 25.0%
!! CATCTGATTTAGTATGTTTT+AGG + chr3_1:88540803-88540822 Msa0385090:intron 25.0%
!!! TGAATCTTTTTTCACAATGA+TGG + chr3_1:88540847-88540866 Msa0385090:intron 25.0%
! ATTGATTAAAGTAAGTGTAG+CGG + chr3_1:88541034-88541053 Msa0385090:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr3_1:88541150-88541169 Msa0385090:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr3_1:88541332-88541351 None:intergenic 25.0%
!! CCTATTATTTCTTATCCAAT+AGG - chr3_1:88541535-88541554 None:intergenic 25.0%
! CCTATTGGATAAGAAATAAT+AGG + chr3_1:88541532-88541551 Msa0385090:intron 25.0%
!! AAATAATAGGGATTGCTATT+GGG + chr3_1:88541545-88541564 Msa0385090:intron 25.0%
! GTCTATCTCTTGAATAAATT+TGG + chr3_1:88541590-88541609 Msa0385090:intron 25.0%
!!! TAATAATTTTCTAGAGTGAC+TGG + chr3_1:88541713-88541732 Msa0385090:intron 25.0%
!!! AATAATTTTCTAGAGTGACT+GGG + chr3_1:88541714-88541733 Msa0385090:intron 25.0%
! TTGAGACAACTATTATTAAC+TGG - chr3_1:88542017-88542036 None:intergenic 25.0%
! TTGAGACAACTATTATTAAC+TGG - chr3_1:88542017-88542036 None:intergenic 25.0%
!! AATTTTTCCGATCTTTTTGT+TGG + chr3_1:88542117-88542136 Msa0385090:intron 25.0%
!!! CTCCTGATTTTTTAAAATCT+CGG + chr3_1:88542285-88542304 Msa0385090:intron 25.0%
!!! ATCCGAGATTTTAAAAAATC+AGG - chr3_1:88542290-88542309 None:intergenic 25.0%
!!! CTGTTAATTTGTGTTTTTTG+AGG - chr3_1:88542359-88542378 None:intergenic 25.0%
! AAAAACACAAATTAACAGTC+TGG + chr3_1:88542361-88542380 Msa0385090:intron 25.0%
! AATTGCAATTAATAGTTAGC+TGG - chr3_1:88542840-88542859 None:intergenic 25.0%
! TAACGGTCAGAAAGTTATTT+TGG - chr3_1:88536036-88536055 None:intergenic 30.0%
ATGAAATTGTTGTGCAGAAA+GGG + chr3_1:88536617-88536636 Msa0385090:intron 30.0%
CAAACATAAACATGTATGCA+AGG - chr3_1:88536775-88536794 None:intergenic 30.0%
AGATACAAAATTGTTCAAGC+TGG + chr3_1:88536882-88536901 Msa0385090:intron 30.0%
TTAATGTTCAAAGTTGACCT+GGG + chr3_1:88538133-88538152 Msa0385090:intron 30.0%
TAATTTCACAGAACTGTCTT+TGG - chr3_1:88538314-88538333 None:intergenic 30.0%
ATATTGAGCTAAGACACTAA+AGG - chr3_1:88538542-88538561 None:intergenic 30.0%
! AATTTGAGGTTCACAAAACA+TGG - chr3_1:88538673-88538692 None:intergenic 30.0%
! TGTTTTGTGAACCTCAAATT+TGG + chr3_1:88538673-88538692 Msa0385090:intron 30.0%
AGTTACACTCAAAAGGAATA+GGG - chr3_1:88538714-88538733 None:intergenic 30.0%
AAGTTACACTCAAAAGGAAT+AGG - chr3_1:88538715-88538734 None:intergenic 30.0%
TAACAGATGCATTATCAGAA+AGG - chr3_1:88539015-88539034 None:intergenic 30.0%
GATATCATGATCCTATTTCA+TGG + chr3_1:88539050-88539069 Msa0385090:intron 30.0%
ATAGAATACAGCCATGAAAT+AGG - chr3_1:88539064-88539083 None:intergenic 30.0%
TAACAGATGCATTATCAGAA+AGG - chr3_1:88539015-88539034 None:intergenic 30.0%
CAAATGATACTGATATCATG+AGG + chr3_1:88539122-88539141 Msa0385090:intron 30.0%
GCATAATTCCTCAATAGTTA+TGG - chr3_1:88539170-88539189 None:intergenic 30.0%
CAAATTATATCGTAGCTTGA+AGG - chr3_1:88539457-88539476 None:intergenic 30.0%
AAATTATAGCGTGCTGAATA+GGG - chr3_1:88539493-88539512 None:intergenic 30.0%
!! GGTTTATTTTTCATTTCAGC+TGG + chr3_1:88539513-88539532 Msa0385090:intron 30.0%
!! TTATTTTTCATTTCAGCTGG+AGG + chr3_1:88539516-88539535 Msa0385090:intron 30.0%
! TATTTTTCATTTCAGCTGGA+GGG + chr3_1:88539517-88539536 Msa0385090:intron 30.0%
TTAAATCCATTAGAGGCTTA+GGG - chr3_1:88539593-88539612 None:intergenic 30.0%
CATAACCTTAAATCCATTAG+AGG - chr3_1:88539600-88539619 None:intergenic 30.0%
! TAAGGTTATGCTTTATTCCA+TGG + chr3_1:88539610-88539629 Msa0385090:intron 30.0%
ATTCAGAAATTGCTTAGTAG+TGG + chr3_1:88540001-88540020 Msa0385090:intron 30.0%
! GTTTTCTTCTGTTGAACTTT+TGG - chr3_1:88540057-88540076 None:intergenic 30.0%
TCAACAGAAGAAAACTTTCA+AGG + chr3_1:88540062-88540081 Msa0385090:intron 30.0%
ATGTGAACATTCAAAAATGG+AGG - chr3_1:88540354-88540373 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr3_1:88541146-88541165 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+AGG - chr3_1:88541216-88541235 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + chr3_1:88541217-88541236 Msa0385090:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr3_1:88541275-88541294 None:intergenic 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - chr3_1:88541285-88541304 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG + chr3_1:88541283-88541302 Msa0385090:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr3_1:88541292-88541311 Msa0385090:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr3_1:88541336-88541355 Msa0385090:intron 30.0%
GAAATAATAGGGATTGCTAT+TGG + chr3_1:88541544-88541563 Msa0385090:intron 30.0%
TTACTAAGAGATAGCTTAAC+TGG - chr3_1:88541809-88541828 None:intergenic 30.0%
! TACATTTAGAACTTCTCCAA+TGG - chr3_1:88541837-88541856 None:intergenic 30.0%
CGGAAAAATTCATCTACAAT+TGG - chr3_1:88542107-88542126 None:intergenic 30.0%
TGAACATCCAACAAAAAGAT+CGG - chr3_1:88542127-88542146 None:intergenic 30.0%
! TTAAGAGTATGTTTCAATGG+AGG + chr3_1:88542155-88542174 Msa0385090:intron 30.0%
!! TTTCAATGGAGGTTTTTAGA+GGG + chr3_1:88542166-88542185 Msa0385090:intron 30.0%
!!! GTTTTTTGAGGGTTTTGAAA+GGG - chr3_1:88542347-88542366 None:intergenic 30.0%
!!! TGTTTTTTGAGGGTTTTGAA+AGG - chr3_1:88542348-88542367 None:intergenic 30.0%
TAAAACTCAAGTGCCTAAAA+AGG + chr3_1:88542444-88542463 Msa0385090:CDS 30.0%
AAACTAAGTCATGACTTTCT+GGG - chr3_1:88542781-88542800 None:intergenic 30.0%
AAAACTAAGTCATGACTTTC+TGG - chr3_1:88542782-88542801 None:intergenic 30.0%
!!! GTCATGACTTAGTTTTTAGT+TGG + chr3_1:88542786-88542805 Msa0385090:exon 30.0%
!!! AGGCTTAAGTTTTTTGTGAA+GGG + chr3_1:88542909-88542928 Msa0385090:three_prime_UTR 30.0%
GATGTTATTGATGAAACTTG+AGG + chr3_1:88543005-88543024 Msa0385090:three_prime_UTR 30.0%
GATGAGAAATGAAGTGAAGA+GGG - chr3_1:88535962-88535981 None:intergenic 35.0%
AGATGAGAAATGAAGTGAAG+AGG - chr3_1:88535963-88535982 None:intergenic 35.0%
!! TGTGAAAATGACGGATCTAA+CGG - chr3_1:88535998-88536017 None:intergenic 35.0%
TACATCAGAAGTTGAGAAGA+AGG + chr3_1:88536084-88536103 Msa0385090:CDS 35.0%
!!! TGTTGTGTTGATTTTTTCCG+TGG + chr3_1:88536377-88536396 Msa0385090:intron 35.0%
TAATGAGGTATATGACTGTG+AGG + chr3_1:88536470-88536489 Msa0385090:intron 35.0%
CATGAAATTGTTGTGCAGAA+AGG + chr3_1:88536616-88536635 Msa0385090:intron 35.0%
CTGAACTTTCAAAGTGAGTT+TGG + chr3_1:88536689-88536708 Msa0385090:intron 35.0%
TTTGTTCCATCCAAATGCTA+GGG - chr3_1:88536952-88536971 None:intergenic 35.0%
! TATCTTAGGCTTGGTTTAGA+TGG + chr3_1:88537092-88537111 Msa0385090:intron 35.0%
TTAGATGGTTACATGGTTGA+TGG + chr3_1:88537107-88537126 Msa0385090:intron 35.0%
TGGTAAATAGTGCAATGCAA+TGG + chr3_1:88537139-88537158 Msa0385090:intron 35.0%
GAAGTTACATATGCTACATG+TGG + chr3_1:88537301-88537320 Msa0385090:CDS 35.0%
GAAGGATCTTCTATACTGTA+TGG + chr3_1:88537355-88537374 Msa0385090:intron 35.0%
AGAACAGATATCCATGATCA+CGG - chr3_1:88537418-88537437 None:intergenic 35.0%
!! TGATAGTATTTGTTGTCCCA+AGG + chr3_1:88537573-88537592 Msa0385090:intron 35.0%
CCAATTAGCATCTGATCAAT+CGG - chr3_1:88537617-88537636 None:intergenic 35.0%
CGATTGATCAGATGCTAATT+GGG + chr3_1:88537615-88537634 Msa0385090:intron 35.0%
GATTGATCAGATGCTAATTG+GGG + chr3_1:88537616-88537635 Msa0385090:intron 35.0%
TGAGCTCAATGGTAATTCAA+TGG - chr3_1:88537648-88537667 None:intergenic 35.0%
! AACTGATGCATTGACAACAA+CGG - chr3_1:88537796-88537815 None:intergenic 35.0%
AAAAACGCAAGAGAAAAGGA+TGG - chr3_1:88537961-88537980 None:intergenic 35.0%
! ATCCTTTTCTCTTGCGTTTT+TGG + chr3_1:88537960-88537979 Msa0385090:intron 35.0%
ATCCAAAAACGCAAGAGAAA+AGG - chr3_1:88537965-88537984 None:intergenic 35.0%
TCTGATGCTCATATTTCATG+AGG - chr3_1:88538031-88538050 None:intergenic 35.0%
GTTAATGTTCAAAGTTGACC+TGG + chr3_1:88538132-88538151 Msa0385090:intron 35.0%
! TTGTTTTCTATATGCAGTGG+CGG + chr3_1:88538482-88538501 Msa0385090:intron 35.0%
! CTTGTGTTATTCATGTGTAC+AGG + chr3_1:88538595-88538614 Msa0385090:intron 35.0%
TGTTATTCATGTGTACAGGT+GGG + chr3_1:88538599-88538618 Msa0385090:intron 35.0%
!!! TTGGTTGGTAGTTTTCAGAT+TGG + chr3_1:88538642-88538661 Msa0385090:intron 35.0%
!!! TGGTTGGTAGTTTTCAGATT+GGG + chr3_1:88538643-88538662 Msa0385090:intron 35.0%
GTTGGAAAGTTACACTCAAA+AGG - chr3_1:88538721-88538740 None:intergenic 35.0%
TAGTTATGGGCTTGAAACAT+TGG - chr3_1:88539156-88539175 None:intergenic 35.0%
TTTCAAGCCCATAACTATTG+AGG + chr3_1:88539159-88539178 Msa0385090:intron 35.0%
GCATCAAATTCCTACACTTA+AGG - chr3_1:88539334-88539353 None:intergenic 35.0%
CAAATTATAGCGTGCTGAAT+AGG - chr3_1:88539494-88539513 None:intergenic 35.0%
CTATTCAGCACGCTATAATT+TGG + chr3_1:88539492-88539511 Msa0385090:intron 35.0%
CTTAAATCCATTAGAGGCTT+AGG - chr3_1:88539594-88539613 None:intergenic 35.0%
!! CTAAGCCTCTAATGGATTTA+AGG + chr3_1:88539592-88539611 Msa0385090:CDS 35.0%
CAGGATGAAGAAGTAAATGA+AGG - chr3_1:88539686-88539705 None:intergenic 35.0%
!!! TTATTTTGGTAAACAGCGGT+TGG + chr3_1:88539723-88539742 Msa0385090:intron 35.0%
AATATACGATGCATGGATTC+AGG + chr3_1:88539746-88539765 Msa0385090:CDS 35.0%
ATATACGATGCATGGATTCA+GGG + chr3_1:88539747-88539766 Msa0385090:CDS 35.0%
TACACATACTTCTGTCCATT+AGG - chr3_1:88539851-88539870 None:intergenic 35.0%
TCAAGTATATCCACCTTCTT+GGG - chr3_1:88539952-88539971 None:intergenic 35.0%
AAGAAGGTGGATATACTTGA+GGG + chr3_1:88539952-88539971 Msa0385090:CDS 35.0%
ACAAATCTGTGTGCATGTAT+GGG - chr3_1:88540320-88540339 None:intergenic 35.0%
AGAAAGTCTTGGGGAAAAAA+TGG - chr3_1:88540457-88540476 None:intergenic 35.0%
!!! CGCTTTGAAATAGCTTCTTT+TGG - chr3_1:88540512-88540531 None:intergenic 35.0%
TATTGCTGATAGACTTGATC+AGG + chr3_1:88540668-88540687 Msa0385090:CDS 35.0%
TCATTGCACTGAATTCACAA+AGG + chr3_1:88540736-88540755 Msa0385090:intron 35.0%
CATTGCACTGAATTCACAAA+GGG + chr3_1:88540737-88540756 Msa0385090:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr3_1:88541139-88541158 Msa0385090:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr3_1:88541159-88541178 Msa0385090:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr3_1:88541164-88541183 Msa0385090:intron 35.0%
!! CTTCTAACAAAGGCATCTAA+GGG - chr3_1:88541206-88541225 None:intergenic 35.0%
!! TCTTCTAACAAAGGCATCTA+AGG - chr3_1:88541207-88541226 None:intergenic 35.0%
TAGAAGAGTAGATCAAATGG+AGG + chr3_1:88541220-88541239 Msa0385090:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr3_1:88541297-88541316 None:intergenic 35.0%
GCTACATGCTATTACAATGT+GGG - chr3_1:88541498-88541517 None:intergenic 35.0%
!! TCTCTTAGTAAGAGTACCAT+TGG + chr3_1:88541818-88541837 Msa0385090:intron 35.0%
ATAGTTGTCTCAAATGCATC+AGG + chr3_1:88542024-88542043 Msa0385090:intron 35.0%
ATAGTTGTCTCAAATGCATC+AGG + chr3_1:88542024-88542043 Msa0385090:intron 35.0%
!! GTTTCAATGGAGGTTTTTAG+AGG + chr3_1:88542165-88542184 Msa0385090:intron 35.0%
!! TTCAATGGAGGTTTTTAGAG+GGG + chr3_1:88542167-88542186 Msa0385090:intron 35.0%
!!! AGGCACTTGAGTTTTATTCA+CGG - chr3_1:88542440-88542459 None:intergenic 35.0%
!!! TTTGCAGTTGCACCTTTTTT+TGG - chr3_1:88542475-88542494 None:intergenic 35.0%
AATAGCGAGGATGAAGTTAA+TGG + chr3_1:88542580-88542599 Msa0385090:CDS 35.0%
! TTAGAACTGCTGTTATTTGC+AGG - chr3_1:88542721-88542740 None:intergenic 35.0%
TTTCGTAGCAACTCAAAATG+CGG + chr3_1:88542813-88542832 Msa0385090:three_prime_UTR 35.0%
!!! AACCCTTTTTTGGAATGTAG+AGG + chr3_1:88542889-88542908 Msa0385090:three_prime_UTR 35.0%
AGCCTCTACATTCCAAAAAA+GGG - chr3_1:88542894-88542913 None:intergenic 35.0%
AAGCCTCTACATTCCAAAAA+AGG - chr3_1:88542895-88542914 None:intergenic 35.0%
!!! GAGGCTTAAGTTTTTTGTGA+AGG + chr3_1:88542908-88542927 Msa0385090:three_prime_UTR 35.0%
!!! CTTAAGTTTTTTGTGAAGGG+AGG + chr3_1:88542912-88542931 Msa0385090:three_prime_UTR 35.0%
!! TTTTTGTGAAGGGAGGTATA+CGG + chr3_1:88542919-88542938 Msa0385090:three_prime_UTR 35.0%
TTAAGGTTCTATTAGGCTGA+TGG - chr3_1:88542963-88542982 None:intergenic 35.0%
CCTAATAGAACCTTAATCAG+CGG + chr3_1:88542967-88542986 Msa0385090:three_prime_UTR 35.0%
TTCATCAATAACATCTCACC+AGG - chr3_1:88543000-88543019 None:intergenic 35.0%
!! TGAAGAGGGTGTTAAGGAAA+TGG - chr3_1:88535948-88535967 None:intergenic 40.0%
!! ATGAAGTGAAGAGGGTGTTA+AGG - chr3_1:88535954-88535973 None:intergenic 40.0%
AACAAGAGTTCACCTCCTTT+GGG - chr3_1:88536130-88536149 None:intergenic 40.0%
AAACAAGAGTTCACCTCCTT+TGG - chr3_1:88536131-88536150 None:intergenic 40.0%
GAAAGTTCAGAAACCACAGT+TGG - chr3_1:88536679-88536698 None:intergenic 40.0%
AAAATTGTTCAAGCTGGAGC+TGG + chr3_1:88536888-88536907 Msa0385090:CDS 40.0%
AAATTGTTCAAGCTGGAGCT+GGG + chr3_1:88536889-88536908 Msa0385090:CDS 40.0%
CCTCTGTAACAACTACAGTA+TGG - chr3_1:88536920-88536939 None:intergenic 40.0%
CCATACTGTAGTTGTTACAG+AGG + chr3_1:88536917-88536936 Msa0385090:CDS 40.0%
ACTGTAGTTGTTACAGAGGA+TGG + chr3_1:88536921-88536940 Msa0385090:CDS 40.0%
GATGGAAATTCCCTAGCATT+TGG + chr3_1:88536939-88536958 Msa0385090:CDS 40.0%
GAAATTCCCTAGCATTTGGA+TGG + chr3_1:88536943-88536962 Msa0385090:CDS 40.0%
GTTTGTTCCATCCAAATGCT+AGG - chr3_1:88536953-88536972 None:intergenic 40.0%
GCATTTGGATGGAACAAACA+TGG + chr3_1:88536954-88536973 Msa0385090:CDS 40.0%
! CATACCAGTTTTTGCAGAAC+CGG - chr3_1:88536991-88537010 None:intergenic 40.0%
GATCCATGCATGCATATCTT+AGG + chr3_1:88537078-88537097 Msa0385090:intron 40.0%
AAGCCTAAGATATGCATGCA+TGG - chr3_1:88537084-88537103 None:intergenic 40.0%
ATGCATGCATATCTTAGGCT+TGG + chr3_1:88537083-88537102 Msa0385090:intron 40.0%
GCTTGGTTTAGATGGTTACA+TGG + chr3_1:88537100-88537119 Msa0385090:intron 40.0%
GTTACATATGCTACATGTGG+TGG + chr3_1:88537304-88537323 Msa0385090:CDS 40.0%
TGATTCTCTATCCGTGATCA+TGG + chr3_1:88537404-88537423 Msa0385090:intron 40.0%
ATTATGATTGCTAGGACTGC+TGG + chr3_1:88537481-88537500 Msa0385090:intron 40.0%
TTATGATTGCTAGGACTGCT+GGG + chr3_1:88537482-88537501 Msa0385090:intron 40.0%
CAGATAACGAGGTATGATTG+AGG + chr3_1:88537536-88537555 Msa0385090:intron 40.0%
AGTTAAGACACTCACACCTT+GGG - chr3_1:88537592-88537611 None:intergenic 40.0%
AAGTTAAGACACTCACACCT+TGG - chr3_1:88537593-88537612 None:intergenic 40.0%
CCGATTGATCAGATGCTAAT+TGG + chr3_1:88537614-88537633 Msa0385090:intron 40.0%
GAAAGCTAGTATGAGCTCAA+TGG - chr3_1:88537659-88537678 None:intergenic 40.0%
!! TTGAGCTCATACTAGCTTTC+AGG + chr3_1:88537659-88537678 Msa0385090:intron 40.0%
!! TGAGCTCATACTAGCTTTCA+GGG + chr3_1:88537660-88537679 Msa0385090:intron 40.0%
ATGTTATCCATTGTTGAGGC+AGG + chr3_1:88537726-88537745 Msa0385090:intron 40.0%
!! GCGTTTTTGGATCATTTGAG+TGG + chr3_1:88537973-88537992 Msa0385090:intron 40.0%
AGACGAATATCAAGCGATCA+TGG + chr3_1:88538048-88538067 Msa0385090:intron 40.0%
GACGAATATCAAGCGATCAT+GGG + chr3_1:88538049-88538068 Msa0385090:intron 40.0%
GCATGTGGAACAAATCATAC+AGG + chr3_1:88538400-88538419 Msa0385090:CDS 40.0%
! GTGTTATTCATGTGTACAGG+TGG + chr3_1:88538598-88538617 Msa0385090:intron 40.0%
GTTATTCATGTGTACAGGTG+GGG + chr3_1:88538600-88538619 Msa0385090:intron 40.0%
TTATGGTGGTTATGGAAGGT+TGG + chr3_1:88538623-88538642 Msa0385090:intron 40.0%
AATTCTGTAGGCTAGGACAT+CGG + chr3_1:88538764-88538783 Msa0385090:intron 40.0%
GCTGAAATAATTGCATCAGG+AGG - chr3_1:88538850-88538869 None:intergenic 40.0%
CCTGCTGAAATAATTGCATC+AGG - chr3_1:88538853-88538872 None:intergenic 40.0%
CCTGATGCAATTATTTCAGC+AGG + chr3_1:88538850-88538869 Msa0385090:CDS 40.0%
CATCTCTAACACACATTCTC+TGG + chr3_1:88538912-88538931 Msa0385090:intron 40.0%
AATATGACGTGCCTCTTTCA+TGG + chr3_1:88538960-88538979 Msa0385090:intron 40.0%
GATACTGATATCATGAGGGT+TGG + chr3_1:88539127-88539146 Msa0385090:intron 40.0%
!! AGCTTAGCCTTAGAAACTCT+AGG - chr3_1:88539293-88539312 None:intergenic 40.0%
! ACTTAAGGTGCTAGCTCAAT+GGG - chr3_1:88539319-88539338 None:intergenic 40.0%
TGGGGCAAAATAAAGAACAC+CGG + chr3_1:88539552-88539571 Msa0385090:CDS 40.0%
TATACGATGCATGGATTCAG+GGG + chr3_1:88539748-88539767 Msa0385090:CDS 40.0%
TGATTCCTCGTGCATAAGTT+GGG + chr3_1:88539793-88539812 Msa0385090:CDS 40.0%
CTCAAGTATATCCACCTTCT+TGG - chr3_1:88539953-88539972 None:intergenic 40.0%
CAAGAAGGTGGATATACTTG+AGG + chr3_1:88539951-88539970 Msa0385090:CDS 40.0%
! TTGAGGGTATGCATGTAATG+AGG + chr3_1:88539968-88539987 Msa0385090:CDS 40.0%
CAGAAATTGCTTAGTAGTGG+AGG + chr3_1:88540004-88540023 Msa0385090:intron 40.0%
CAAATCTGTGTGCATGTATG+GGG - chr3_1:88540319-88540338 None:intergenic 40.0%
GACAAATCTGTGTGCATGTA+TGG - chr3_1:88540321-88540340 None:intergenic 40.0%
AGCTTACTGAGAAAGTCTTG+GGG - chr3_1:88540466-88540485 None:intergenic 40.0%
CAGCTTACTGAGAAAGTCTT+GGG - chr3_1:88540467-88540486 None:intergenic 40.0%
!! TTCTCAAACAGTGTTGCTTG+TGG + chr3_1:88540609-88540628 Msa0385090:intron 40.0%
!! AAACAGTGTTGCTTGTGGTT+TGG + chr3_1:88540614-88540633 Msa0385090:intron 40.0%
!! AACAGTGTTGCTTGTGGTTT+GGG + chr3_1:88540615-88540634 Msa0385090:intron 40.0%
!! GCTTGTGATTCTGAGATGAT+AGG - chr3_1:88540710-88540729 None:intergenic 40.0%
ATGAACAAACTGACGAGAGA+AGG - chr3_1:88540944-88540963 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG + chr3_1:88541087-88541106 Msa0385090:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr3_1:88541245-88541264 Msa0385090:intron 40.0%
! CAACGAGTTGGATCCAAATA+TGG + chr3_1:88541316-88541335 Msa0385090:intron 40.0%
! AAGCCTTATCCCACTAAGTT+GGG - chr3_1:88541385-88541404 None:intergenic 40.0%
TGTACGAAACTGACTGTCAT+TGG + chr3_1:88541448-88541467 Msa0385090:intron 40.0%
CGCTACATGCTATTACAATG+TGG - chr3_1:88541499-88541518 None:intergenic 40.0%
! CGTTGATTAGCTACTCCTAT+TGG + chr3_1:88541517-88541536 Msa0385090:intron 40.0%
!!! ATTTTCTAGAGTGACTGGGT+TGG + chr3_1:88541718-88541737 Msa0385090:intron 40.0%
GGAGTGAATGAGTGCTTATT+AGG + chr3_1:88541739-88541758 Msa0385090:intron 40.0%
!! TTTTGAAAGGGAGTCTTGGA+GGG - chr3_1:88542335-88542354 None:intergenic 40.0%
CAACGAAATCAGTACCAGTT+TGG - chr3_1:88542394-88542413 None:intergenic 40.0%
AACTCAAGTGCCTAAAAAGG+CGG + chr3_1:88542447-88542466 Msa0385090:CDS 40.0%
!!! TTTTTTGGTGCCGCCTTTTT+AGG - chr3_1:88542460-88542479 None:intergenic 40.0%
AAAAAGGCGGCACCAAAAAA+AGG + chr3_1:88542460-88542479 Msa0385090:CDS 40.0%
TGAAGAAAGTGACAATAGCG+AGG + chr3_1:88542567-88542586 Msa0385090:CDS 40.0%
! CCGCTGATTAAGGTTCTATT+AGG - chr3_1:88542970-88542989 None:intergenic 40.0%
GATACTACTACAGTGAGGTG+CGG - chr3_1:88535885-88535904 None:intergenic 45.0%
ATGAGAGGAGAGAAGGAGAT+TGG - chr3_1:88535917-88535936 None:intergenic 45.0%
!! AGAGGGTGTTAAGGAAATGG+CGG - chr3_1:88535945-88535964 None:intergenic 45.0%
ACGGATCTAACGGCTAGTAT+TGG - chr3_1:88535988-88536007 None:intergenic 45.0%
AGACATTTCACCGTTCACTC+CGG - chr3_1:88536065-88536084 None:intergenic 45.0%
AGAAGTTGAGAAGAAGGTCG+AGG + chr3_1:88536090-88536109 Msa0385090:CDS 45.0%
GAAGAGAATCAAGCTCCCAA+AGG + chr3_1:88536112-88536131 Msa0385090:CDS 45.0%
!!! GGAGGTGAACTCTTGTTTTG+TGG + chr3_1:88536133-88536152 Msa0385090:CDS 45.0%
AGGAGAGACCAAATTACCCT+CGG - chr3_1:88536200-88536219 None:intergenic 45.0%
CAGCATTCGATACGTTGCAT+CGG + chr3_1:88536246-88536265 Msa0385090:CDS 45.0%
AGCATTCGATACGTTGCATC+GGG + chr3_1:88536247-88536266 Msa0385090:CDS 45.0%
!! TTGAAGGGCGTTGCTATACA+TGG + chr3_1:88536442-88536461 Msa0385090:CDS 45.0%
!! TGAAGGGCGTTGCTATACAT+GGG + chr3_1:88536443-88536462 Msa0385090:CDS 45.0%
GAGATACCATTCAGCGTGAT+AGG + chr3_1:88536653-88536672 Msa0385090:CDS 45.0%
TGGAACAAACATGGACAGCT+AGG + chr3_1:88536963-88536982 Msa0385090:CDS 45.0%
AAACATGGACAGCTAGGTTC+CGG + chr3_1:88536969-88536988 Msa0385090:CDS 45.0%
!! GATGGTTACATGGTTGATGG+TGG + chr3_1:88537110-88537129 Msa0385090:intron 45.0%
!! ATGGTTGATGGTGGAGTGAA+TGG + chr3_1:88537119-88537138 Msa0385090:intron 45.0%
ATCAGATGCTAATTGGGGCT+GGG + chr3_1:88537621-88537640 Msa0385090:intron 45.0%
AAATGAGCCTGCCTCAACAA+TGG - chr3_1:88537736-88537755 None:intergenic 45.0%
! TTTTCTATATGCAGTGGCGG+TGG + chr3_1:88538485-88538504 Msa0385090:intron 45.0%
ATTCTGTAGGCTAGGACATC+GGG + chr3_1:88538765-88538784 Msa0385090:intron 45.0%
GTGAAAATATCAACACGGCG+TGG - chr3_1:88538811-88538830 None:intergenic 45.0%
GTGAATTCTGCTTGTACTGC+AGG + chr3_1:88538877-88538896 Msa0385090:CDS 45.0%
! CATTTTACAACCGACCACGA+GGG + chr3_1:88539252-88539271 Msa0385090:intron 45.0%
AGTTTGAATTCCCTCGTGGT+CGG - chr3_1:88539265-88539284 None:intergenic 45.0%
CTCAGCACCTAGAGTTTCTA+AGG + chr3_1:88539283-88539302 Msa0385090:intron 45.0%
! CACTTAAGGTGCTAGCTCAA+TGG - chr3_1:88539320-88539339 None:intergenic 45.0%
TGAGCTAGCACCTTAAGTGT+AGG + chr3_1:88539321-88539340 Msa0385090:intron 45.0%
TAAAGAACACCGGTGATGAC+TGG + chr3_1:88539562-88539581 Msa0385090:CDS 45.0%
GATGTACCCTAAGCCTCTAA+TGG + chr3_1:88539584-88539603 Msa0385090:CDS 45.0%
CGGTTGGAATATACGATGCA+TGG + chr3_1:88539739-88539758 Msa0385090:CDS 45.0%
ATACGATGCATGGATTCAGG+GGG + chr3_1:88539749-88539768 Msa0385090:CDS 45.0%
! GGGGTATGCACCATTTTGTT+GGG + chr3_1:88539768-88539787 Msa0385090:CDS 45.0%
! GGGTATGCACCATTTTGTTG+GGG + chr3_1:88539769-88539788 Msa0385090:CDS 45.0%
AGGAATCAGCCCCAACAAAA+TGG - chr3_1:88539781-88539800 None:intergenic 45.0%
CTGATTCCTCGTGCATAAGT+TGG + chr3_1:88539792-88539811 Msa0385090:CDS 45.0%
GATTCCTCGTGCATAAGTTG+GGG + chr3_1:88539794-88539813 Msa0385090:CDS 45.0%
GGAACAGCTGAAGACCTAAA+GGG - chr3_1:88539931-88539950 None:intergenic 45.0%
GCAGCTTACTGAGAAAGTCT+TGG - chr3_1:88540468-88540487 None:intergenic 45.0%
! TTGTGGTTTGGGTCATTCCA+TGG + chr3_1:88540626-88540645 Msa0385090:CDS 45.0%
TTTGGGTCATTCCATGGTTG+TGG + chr3_1:88540632-88540651 Msa0385090:CDS 45.0%
TGCTCTATCAACCACAACCA+TGG - chr3_1:88540646-88540665 None:intergenic 45.0%
! AAGTAAGTGTAGCGGAGATG+TGG + chr3_1:88541042-88541061 Msa0385090:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG + chr3_1:88541076-88541095 Msa0385090:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG + chr3_1:88541081-88541100 Msa0385090:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr3_1:88541112-88541131 Msa0385090:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr3_1:88541113-88541132 Msa0385090:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr3_1:88541114-88541133 Msa0385090:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr3_1:88541229-88541248 Msa0385090:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr3_1:88541239-88541258 Msa0385090:intron 45.0%
GGATTTAGAGGTCAACGAGT+TGG + chr3_1:88541304-88541323 Msa0385090:intron 45.0%
! CTTATCCCACTAAGTTGGGT+CGG - chr3_1:88541381-88541400 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+TGG - chr3_1:88541386-88541405 None:intergenic 45.0%
CAACTTAGTGGGATAAGGCT+TGG + chr3_1:88541384-88541403 Msa0385090:intron 45.0%
AGAGTAAGTGATGTGACTCG+TGG + chr3_1:88541780-88541799 Msa0385090:intron 45.0%
GAGTAAGTGATGTGACTCGT+GGG + chr3_1:88541781-88541800 Msa0385090:intron 45.0%
AGTAAGTGATGTGACTCGTG+GGG + chr3_1:88541782-88541801 Msa0385090:intron 45.0%
CTGCAGCTTGATACACATGA+TGG + chr3_1:88541924-88541943 Msa0385090:intron 45.0%
ACACATGATGGCAAAGCTGT+TGG + chr3_1:88541936-88541955 Msa0385090:CDS 45.0%
!!! GTTTTGAAAGGGAGTCTTGG+AGG - chr3_1:88542336-88542355 None:intergenic 45.0%
!!! AGGGTTTTGAAAGGGAGTCT+TGG - chr3_1:88542339-88542358 None:intergenic 45.0%
TTTCGTTGTGTTCTTGCTGC+AGG + chr3_1:88542406-88542425 Msa0385090:intron 45.0%
AAGCTGACAGCTCAAAGAAG+AGG + chr3_1:88542497-88542516 Msa0385090:CDS 45.0%
CTCAGAAGAAGAGCAAGAAG+AGG + chr3_1:88542543-88542562 Msa0385090:CDS 45.0%
CGAGGATGAAGTTAATGGTG+AGG + chr3_1:88542585-88542604 Msa0385090:CDS 45.0%
TGAAGTTAATGGTGAGGCTG+AGG + chr3_1:88542591-88542610 Msa0385090:CDS 45.0%
GCTGAGGTTAAAACATCACG+TGG + chr3_1:88542607-88542626 Msa0385090:CDS 45.0%
GAGGTTAAAACATCACGTGG+TGG + chr3_1:88542610-88542629 Msa0385090:CDS 45.0%
! TCACGTGGTGGAAAAAGTTC+TGG + chr3_1:88542622-88542641 Msa0385090:CDS 45.0%
! TGGTGGAAAAAGTTCTGGCA+AGG + chr3_1:88542627-88542646 Msa0385090:CDS 45.0%
! GGTGGAAAAAGTTCTGGCAA+GGG + chr3_1:88542628-88542647 Msa0385090:CDS 45.0%
TCTTCTCCAGTGAAGTCAAC+TGG + chr3_1:88542742-88542761 Msa0385090:CDS 45.0%
! CTCTTACCAGTTGACTTCAC+TGG - chr3_1:88542751-88542770 None:intergenic 45.0%
GTGAAGTCAACTGGTAAGAG+AGG + chr3_1:88542751-88542770 Msa0385090:CDS 45.0%
GGCTGATGGAAAACTGAAGA+AGG - chr3_1:88542949-88542968 None:intergenic 45.0%
ATAGAACCTTAATCAGCGGC+TGG + chr3_1:88542971-88542990 Msa0385090:three_prime_UTR 45.0%
!!! AAAGTATTATATATTTATTT+TGG + chr3_1:88539709-88539728 Msa0385090:intron 5.0%
!!! AATATTTTTTTATATAACAA+TGG + chr3_1:88540257-88540276 Msa0385090:intron 5.0%
GCGCAGATACTACTACAGTG+AGG - chr3_1:88535890-88535909 None:intergenic 50.0%
GGGAAAGATGAGAGGAGAGA+AGG - chr3_1:88535924-88535943 None:intergenic 50.0%
! GAAATGGCGGGAAAGATGAG+AGG - chr3_1:88535932-88535951 None:intergenic 50.0%
!! GAGGGTGTTAAGGAAATGGC+GGG - chr3_1:88535944-88535963 None:intergenic 50.0%
TTTCTGACCGTTACTCTCGC+CGG + chr3_1:88536043-88536062 Msa0385090:five_prime_UTR 50.0%
GAGAATCAAGCTCCCAAAGG+AGG + chr3_1:88536115-88536134 Msa0385090:CDS 50.0%
GATATCGTTGGTCGTCGCAA+AGG + chr3_1:88536169-88536188 Msa0385090:CDS 50.0%
AGCTGCATTCATCGCAACCA+CGG - chr3_1:88536397-88536416 None:intergenic 50.0%
! TTCGTGTCATTGCGTGGCAT+TGG + chr3_1:88536416-88536435 Msa0385090:CDS 50.0%
!! GAAGGGCGTTGCTATACATG+GGG + chr3_1:88536444-88536463 Msa0385090:CDS 50.0%
!! AAGGGCGTTGCTATACATGG+GGG + chr3_1:88536445-88536464 Msa0385090:CDS 50.0%
! CTATACATGGGGGCGTAATG+AGG + chr3_1:88536455-88536474 Msa0385090:CDS 50.0%
TGTTGTGCAGAAAGGGCAAC+TGG + chr3_1:88536624-88536643 Msa0385090:intron 50.0%
GTTGTGCAGAAAGGGCAACT+GGG + chr3_1:88536625-88536644 Msa0385090:intron 50.0%
! AGTTGGCCTATCACGCTGAA+TGG - chr3_1:88536662-88536681 None:intergenic 50.0%
GGTTCCGGTTCTGCAAAAAC+TGG + chr3_1:88536984-88537003 Msa0385090:CDS 50.0%
CGACACAAGACAGCGAATAG+GGG - chr3_1:88537281-88537300 None:intergenic 50.0%
CCGACACAAGACAGCGAATA+GGG - chr3_1:88537282-88537301 None:intergenic 50.0%
CCCTATTCGCTGTCTTGTGT+CGG + chr3_1:88537279-88537298 Msa0385090:CDS 50.0%
TCCGACACAAGACAGCGAAT+AGG - chr3_1:88537283-88537302 None:intergenic 50.0%
GTGTGGCTATCTTCAGTCGA+AGG + chr3_1:88537337-88537356 Msa0385090:CDS 50.0%
TTCCACAGTATGGGCAGCTT+GGG + chr3_1:88537506-88537525 Msa0385090:CDS 50.0%
TGGGCATGGAACAGATAACG+AGG + chr3_1:88537525-88537544 Msa0385090:CDS 50.0%
GATCAGATGCTAATTGGGGC+TGG + chr3_1:88537620-88537639 Msa0385090:intron 50.0%
GAGCAATAGCTTCCCTTGCT+GGG + chr3_1:88538359-88538378 Msa0385090:CDS 50.0%
AGCAATAGCTTCCCTTGCTG+GGG + chr3_1:88538360-88538379 Msa0385090:CDS 50.0%
GACAATGGTTTCCCCAGCAA+GGG - chr3_1:88538374-88538393 None:intergenic 50.0%
TGACAATGGTTTCCCCAGCA+AGG - chr3_1:88538375-88538394 None:intergenic 50.0%
TGCTGGGGAAACCATTGTCA+AGG + chr3_1:88538375-88538394 Msa0385090:CDS 50.0%
TGGGGAAACCATTGTCAAGG+TGG + chr3_1:88538378-88538397 Msa0385090:CDS 50.0%
ACCATTGTCAAGGTGGCATG+TGG + chr3_1:88538385-88538404 Msa0385090:CDS 50.0%
TCCACATGCCACCTTGACAA+TGG - chr3_1:88538389-88538408 None:intergenic 50.0%
CATGTGTACAGGTGGGGTTA+TGG + chr3_1:88538606-88538625 Msa0385090:intron 50.0%
AGGTGGGGTTATGGTGGTTA+TGG + chr3_1:88538615-88538634 Msa0385090:intron 50.0%
GGGGTTATGGTGGTTATGGA+AGG + chr3_1:88538619-88538638 Msa0385090:CDS 50.0%
! GGTGGTTATGGAAGGTTGGT+TGG + chr3_1:88538627-88538646 Msa0385090:intron 50.0%
ACAGCCATCAGCCATGAAAG+AGG - chr3_1:88538974-88538993 None:intergenic 50.0%
CCTCGTGGTCGGTTGTAAAA+TGG - chr3_1:88539254-88539273 None:intergenic 50.0%
! CCATTTTACAACCGACCACG+AGG + chr3_1:88539251-88539270 Msa0385090:intron 50.0%
GCTGAGTTTGAATTCCCTCG+TGG - chr3_1:88539269-88539288 None:intergenic 50.0%
TGGAGGGCAGCTGTATATGT+GGG + chr3_1:88539533-88539552 Msa0385090:CDS 50.0%
AGGGTACATCCAGTCATCAC+CGG - chr3_1:88539574-88539593 None:intergenic 50.0%
!! GGGGGTATGCACCATTTTGT+TGG + chr3_1:88539767-88539786 Msa0385090:CDS 50.0%
ATGACCCCAACTTATGCACG+AGG - chr3_1:88539801-88539820 None:intergenic 50.0%
AGTTGGGGTCATGCTCAGAA+TGG + chr3_1:88539809-88539828 Msa0385090:CDS 50.0%
TCATGCTCAGAATGGAGAGC+TGG + chr3_1:88539817-88539836 Msa0385090:CDS 50.0%
CATGCTCAGAATGGAGAGCT+GGG + chr3_1:88539818-88539837 Msa0385090:CDS 50.0%
CAGAATGGAGAGCTGGGATA+CGG + chr3_1:88539824-88539843 Msa0385090:CDS 50.0%
CCTAAAGGGCAAGTGCAAAC+AGG - chr3_1:88539917-88539936 None:intergenic 50.0%
CCTGTTTGCACTTGCCCTTT+AGG + chr3_1:88539914-88539933 Msa0385090:intron 50.0%
GGGAACAGCTGAAGACCTAA+AGG - chr3_1:88539932-88539951 None:intergenic 50.0%
GTCTTCAGCTGTTCCCAAGA+AGG + chr3_1:88539936-88539955 Msa0385090:CDS 50.0%
TTCAGCTGTTCCCAAGAAGG+TGG + chr3_1:88539939-88539958 Msa0385090:CDS 50.0%
! GTGTGCATGTATGGGGCATT+TGG - chr3_1:88540312-88540331 None:intergenic 50.0%
TGGATGTTGCACTGGATGAG+TGG + chr3_1:88541062-88541081 Msa0385090:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr3_1:88541115-88541134 Msa0385090:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr3_1:88541120-88541139 None:intergenic 50.0%
! ACTAAGTTGGGTCGGCTACA+TGG - chr3_1:88541373-88541392 None:intergenic 50.0%
ATGTAGCCGACCCAACTTAG+TGG + chr3_1:88541372-88541391 Msa0385090:intron 50.0%
TGTAGCCGACCCAACTTAGT+GGG + chr3_1:88541373-88541392 Msa0385090:intron 50.0%
CGACCCAACTTAGTGGGATA+AGG + chr3_1:88541379-88541398 Msa0385090:intron 50.0%
! GATGGCAAAGCTGTTGGTGA+AGG + chr3_1:88541942-88541961 Msa0385090:CDS 50.0%
AGTCTGGTCTGTGTCCAAAC+TGG + chr3_1:88542377-88542396 Msa0385090:intron 50.0%
! GAAAAAGTTCTGGCAAGGGC+CGG + chr3_1:88542632-88542651 Msa0385090:CDS 50.0%
! AAAAAGTTCTGGCAAGGGCC+GGG + chr3_1:88542633-88542652 Msa0385090:CDS 50.0%
ACACTTTGGATGCCTTACCC+CGG - chr3_1:88542654-88542673 None:intergenic 50.0%
! GGGTAAGGCATCCAAAGTGT+CGG + chr3_1:88542654-88542673 Msa0385090:CDS 50.0%
!! ATCCAAAGTGTCGGAGTCTG+AGG + chr3_1:88542663-88542682 Msa0385090:CDS 50.0%
!! TCCAAAGTGTCGGAGTCTGA+GGG + chr3_1:88542664-88542683 Msa0385090:CDS 50.0%
GTTCACTCCGGCGAGAGTAA+CGG - chr3_1:88536053-88536072 None:intergenic 55.0%
GTTACTCTCGCCGGAGTGAA+CGG + chr3_1:88536052-88536071 Msa0385090:five_prime_UTR 55.0%
!!! TGTTTTGTGGTGCCACGTGC+TGG + chr3_1:88536146-88536165 Msa0385090:CDS 55.0%
!!! GTTTTGTGGTGCCACGTGCT+GGG + chr3_1:88536147-88536166 Msa0385090:CDS 55.0%
ACCAACGATATCCCAGCACG+TGG - chr3_1:88536161-88536180 None:intergenic 55.0%
AGGTCCTGCCGAGGGTAATT+TGG + chr3_1:88536189-88536208 Msa0385090:CDS 55.0%
GAGACCAAATTACCCTCGGC+AGG - chr3_1:88536196-88536215 None:intergenic 55.0%
! TGCAGCTTCGTGTCATTGCG+TGG + chr3_1:88536410-88536429 Msa0385090:intron 55.0%
! TGCGTGGCATTGGACGTTGA+AGG + chr3_1:88536426-88536445 Msa0385090:CDS 55.0%
! GCGTGGCATTGGACGTTGAA+GGG + chr3_1:88536427-88536446 Msa0385090:CDS 55.0%
CAGAAAGGGCAACTGGGTCA+TGG + chr3_1:88536631-88536650 Msa0385090:intron 55.0%
TCAGCGTGATAGGCCAACTG+TGG + chr3_1:88536663-88536682 Msa0385090:CDS 55.0%
!! GTGGTGGCGACTTTTCTGTG+TGG + chr3_1:88537320-88537339 Msa0385090:CDS 55.0%
ACTGCTGGGCTTCCACAGTA+TGG + chr3_1:88537496-88537515 Msa0385090:CDS 55.0%
CTGCTGGGCTTCCACAGTAT+GGG + chr3_1:88537497-88537516 Msa0385090:CDS 55.0%
CTTCCACAGTATGGGCAGCT+TGG + chr3_1:88537505-88537524 Msa0385090:CDS 55.0%
GAAGCTATTGCTCGAGGACG+TGG - chr3_1:88538352-88538371 None:intergenic 55.0%
GCAAGGGAAGCTATTGCTCG+AGG - chr3_1:88538358-88538377 None:intergenic 55.0%
CGAGCAATAGCTTCCCTTGC+TGG + chr3_1:88538358-88538377 Msa0385090:CDS 55.0%
GCAGTGGCGGTGGATAAGAA+TGG + chr3_1:88538495-88538514 Msa0385090:intron 55.0%
GTGTACAGGTGGGGTTATGG+TGG + chr3_1:88538609-88538628 Msa0385090:intron 55.0%
CGTGCCTCTTTCATGGCTGA+TGG + chr3_1:88538967-88538986 Msa0385090:intron 55.0%
CTGGAGGGCAGCTGTATATG+TGG + chr3_1:88539532-88539551 Msa0385090:CDS 55.0%
GGAGGGCAGCTGTATATGTG+GGG + chr3_1:88539534-88539553 Msa0385090:CDS 55.0%
GAGCTGGGATACGGACCTAA+TGG + chr3_1:88539833-88539852 Msa0385090:CDS 55.0%
CGGAGATGTGGATGTTGCAC+TGG + chr3_1:88541054-88541073 Msa0385090:intron 55.0%
! AAAAGTTCTGGCAAGGGCCG+GGG + chr3_1:88542634-88542653 Msa0385090:CDS 55.0%
ACCCTCAGACTCCGACACTT+TGG - chr3_1:88542668-88542687 None:intergenic 55.0%
GTGTCGGAGTCTGAGGGTAA+AGG + chr3_1:88542670-88542689 Msa0385090:CDS 55.0%
GAGTCTGAGGGTAAAGGCTC+TGG + chr3_1:88542676-88542695 Msa0385090:CDS 55.0%
! AGGTCACCAGCCGCTGATTA+AGG - chr3_1:88542980-88542999 None:intergenic 55.0%
TTAATCAGCGGCTGGTGACC+TGG + chr3_1:88542979-88542998 Msa0385090:three_prime_UTR 55.0%
GCCACGTGCTGGGATATCGT+TGG + chr3_1:88536157-88536176 Msa0385090:CDS 60.0%
TGCTGATGCCGACGAGAGGA+CGG - chr3_1:88536231-88536250 None:intergenic 60.0%
CGAATGCTGATGCCGACGAG+AGG - chr3_1:88536235-88536254 None:intergenic 60.0%
CGATACGTTGCATCGGGCTG+CGG + chr3_1:88536253-88536272 Msa0385090:CDS 60.0%
TGCCCAAGCTGCCCATACTG+TGG - chr3_1:88537511-88537530 None:intergenic 60.0%
CAGTATGGGCAGCTTGGGCA+TGG + chr3_1:88537511-88537530 Msa0385090:CDS 60.0%
GCTAGGACATCGGGAGCAGA+AGG + chr3_1:88538774-88538793 Msa0385090:CDS 60.0%
TCGTCGCAAAGGTCCTGCCG+AGG + chr3_1:88536180-88536199 Msa0385090:CDS 65.0%
CGTCGCAAAGGTCCTGCCGA+GGG + chr3_1:88536181-88536200 Msa0385090:CDS 65.0%
TGATGCCGACGAGAGGACGG+AGG - chr3_1:88536228-88536247 None:intergenic 65.0%
TTCTGGCAAGGGCCGGGGTA+AGG + chr3_1:88542639-88542658 Msa0385090:CDS 65.0%
! GAGGGTAAAGGCTCTGGCCG+AGG + chr3_1:88542682-88542701 Msa0385090:CDS 65.0%
! AAAGGCTCTGGCCGAGGACG+TGG + chr3_1:88542688-88542707 Msa0385090:CDS 65.0%
ACGAGAGGACGGAGGCGGGA+AGG - chr3_1:88536220-88536239 None:intergenic 70.0%
TCCCGCCTCCGTCCTCTCGT+CGG + chr3_1:88536220-88536239 Msa0385090:CDS 70.0%
TGCCGACGAGAGGACGGAGG+CGG - chr3_1:88536225-88536244 None:intergenic 70.0%
! CAGGAGCGCGACCACGTCCT+CGG - chr3_1:88542702-88542721 None:intergenic 70.0%
GCCGACGAGAGGACGGAGGC+GGG - chr3_1:88536224-88536243 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88535843 88543094 88535843 ID=Msa0385090;Name=Msa0385090
chr3_1 mRNA 88535843 88543094 88535843 ID=Msa0385090-mRNA-1;Parent=Msa0385090;Name=Msa0385090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=236|1|1|1|1|1|16|302|543
chr3_1 exon 88535843 88536274 88535843 ID=Msa0385090-mRNA-1:exon:23863;Parent=Msa0385090-mRNA-1
chr3_1 exon 88536415 88536476 88536415 ID=Msa0385090-mRNA-1:exon:23864;Parent=Msa0385090-mRNA-1
chr3_1 exon 88536634 88536701 88536634 ID=Msa0385090-mRNA-1:exon:23865;Parent=Msa0385090-mRNA-1
chr3_1 exon 88536884 88537005 88536884 ID=Msa0385090-mRNA-1:exon:23866;Parent=Msa0385090-mRNA-1
chr3_1 exon 88537266 88537371 88537266 ID=Msa0385090-mRNA-1:exon:23867;Parent=Msa0385090-mRNA-1
chr3_1 exon 88537495 88537546 88537495 ID=Msa0385090-mRNA-1:exon:23868;Parent=Msa0385090-mRNA-1
chr3_1 exon 88538304 88538421 88538304 ID=Msa0385090-mRNA-1:exon:23869;Parent=Msa0385090-mRNA-1
chr3_1 exon 88538499 88538529 88538499 ID=Msa0385090-mRNA-1:exon:23870;Parent=Msa0385090-mRNA-1
chr3_1 exon 88538617 88538640 88538617 ID=Msa0385090-mRNA-1:exon:23871;Parent=Msa0385090-mRNA-1
chr3_1 exon 88538774 88538898 88538774 ID=Msa0385090-mRNA-1:exon:23872;Parent=Msa0385090-mRNA-1
chr3_1 exon 88539532 88539613 88539532 ID=Msa0385090-mRNA-1:exon:23873;Parent=Msa0385090-mRNA-1
chr3_1 exon 88539739 88539861 88539739 ID=Msa0385090-mRNA-1:exon:23874;Parent=Msa0385090-mRNA-1
chr3_1 exon 88539936 88539989 88539936 ID=Msa0385090-mRNA-1:exon:23875;Parent=Msa0385090-mRNA-1
chr3_1 exon 88540620 88540689 88540620 ID=Msa0385090-mRNA-1:exon:23876;Parent=Msa0385090-mRNA-1
chr3_1 exon 88541930 88541963 88541930 ID=Msa0385090-mRNA-1:exon:23877;Parent=Msa0385090-mRNA-1
chr3_1 exon 88542428 88543094 88542428 ID=Msa0385090-mRNA-1:exon:23878;Parent=Msa0385090-mRNA-1
chr3_1 five_prime_UTR 88535843 88536078 88535843 ID=Msa0385090-mRNA-1:five_prime_utr;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88536079 88536274 88536079 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88536415 88536476 88536415 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88536634 88536701 88536634 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88536884 88537005 88536884 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88537266 88537371 88537266 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88537495 88537546 88537495 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88538304 88538421 88538304 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88538499 88538529 88538499 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88538617 88538640 88538617 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88538774 88538898 88538774 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88539532 88539613 88539532 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88539739 88539861 88539739 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88539936 88539989 88539936 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88540620 88540689 88540620 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88541930 88541963 88541930 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 CDS 88542428 88542792 88542428 ID=Msa0385090-mRNA-1:cds;Parent=Msa0385090-mRNA-1
chr3_1 three_prime_UTR 88542793 88543094 88542793 ID=Msa0385090-mRNA-1:three_prime_utr;Parent=Msa0385090-mRNA-1
Gene Sequence

>Msa0385090

ATGTCTACATCAGAAGTTGAGAAGAAGGTCGAGGAAGAGAATCAAGCTCCCAAAGGAGGTGAACTCTTGTTTTGTGGTGCCACGTGCTGGGATATCGTTGGTCGTCGCAAAGGTCCTGCCGAGGGTAATTTGGTCTCTCCTTCCCGCCTCCGTCCTCTCGTCGGCATCAGCATTCGATACGTTGCATCGGGCTGCGCTTCGTGTCATTGCGTGGCATTGGACGTTGAAGGGCGTTGCTATACATGGGGGCGTAATGAGAAAGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACTGTGGTTTCTGAACTTTCAAAATACAAAATTGTTCAAGCTGGAGCTGGGAAGAGCCATACTGTAGTTGTTACAGAGGATGGAAATTCCCTAGCATTTGGATGGAACAAACATGGACAGCTAGGTTCCGGTTCTGCAAAAACTGAAATTGAATCATCCCCTATTCGCTGTCTTGTGTCGGAAGTTACATATGCTACATGTGGTGGCGACTTTTCTGTGTGGCTATCTTCAGTCGAAGGATCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAACGAGTATAATTCCAAAGACAGTTCTGTGAAATTAGTTTATGAAGCACAGCCACGTCCTCGAGCAATAGCTTCCCTTGCTGGGGAAACCATTGTCAAGGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTATGGTGGTTATGGAAGGCTAGGACATCGGGAGCAGAAGGATGAATTCGCTCCACGCCGTGTTGATATTTTCACGAATAGAAACGTGTTGCCTCCTGATGCAATTATTTCAGCAGGTTCTGTGAATTCTGCTTGTACTGCAGCTGGAGGGCAGCTGTATATGTGGGGCAAAATAAAGAACACCGGTGATGACTGGATGTACCCTAAGCCTCTAATGGATTTAAGCGGTTGGAATATACGATGCATGGATTCAGGGGGTATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTGGGATACGGACCTAATGGACAGAAGTCTTCAGCTGTTCCCAAGAAGGTGGATATACTTGAGGGTATGCATGTAATGAGTGTTGCTTGTGGTTTGGGTCATTCCATGGTTGTGGTTGATAGAGCAAATATTGCTGATAGACTTGATCAGCTTGATACACATGATGGCAAAGCTGTTGGTGAAGGTAATGAGACCGTGAATAAAACTCAAGTGCCTAAAAAGGCGGCACCAAAAAAAGGTGCAACTGCAAAGAAAGCTGACAGCTCAAAGAAGAGGAAAAAAGCAAAAGATGCATCTAACTCAGAAGAAGAGCAAGAAGAGGCTGAAGAAAGTGACAATAGCGAGGATGAAGTTAATGGTGAGGCTGAGGTTAAAACATCACGTGGTGGAAAAAGTTCTGGCAAGGGCCGGGGTAAGGCATCCAAAGTGTCGGAGTCTGAGGGTAAAGGCTCTGGCCGAGGACGTGGTCGCGCTCCTGCAAATAACAGCAGTTCTAAATCTTCTCCAGTGAAGTCAACTGGTAAGAGAGGAAGACCCAGAAAGTCATGA
Protein sequence

>Msa0385090

MSTSEVEKKVEEENQAPKGGELLFCGATCWDIVGRRKGPAEGNLVSPSRLRPLVGISIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVQAGAGKSHTVVVTEDGNSLAFGWNKHGQLGSGSAKTEIESSPIRCLVSEVTYATCGGDFSVWLSSVEGSSILTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFAPRRVDIFTNRNVLPPDAIISAGSVNSACTAAGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGHAQNGELGYGPNGQKSSAVPKKVDILEGMHVMSVACGLGHSMVVVDRANIADRLDQLDTHDGKAVGEGNETVNKTQVPKKAAPKKGATAKKADSSKKRKKAKDASNSEEEQEEAEESDNSEDEVNGEAEVKTSRGGKSSGKGRGKASKVSESEGKGSGRGRGRAPANNSSSKSSPVKSTGKRGRPRKS*