Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0479430 | XP_003603764.2 | 91.288 | 264 | 22 | 1 | 1 | 264 | 1 | 263 | 2.60e-92 | 283 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0479430 | B7FL43 | 91.288 | 264 | 22 | 1 | 1 | 264 | 1 | 263 | 1.24e-92 | 283 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003780 | Msa0479430 | 0.823753 | 1.168975e-53 | -8.615850e-47 |
Msa0032090 | Msa0479430 | 0.821924 | 3.117050e-53 | -8.615850e-47 |
Msa0032430 | Msa0479430 | 0.804582 | 2.016187e-49 | -8.615850e-47 |
Msa0040690 | Msa0479430 | 0.816216 | 6.198359e-52 | -8.615850e-47 |
Msa0074320 | Msa0479430 | 0.819472 | 1.140587e-52 | -8.615850e-47 |
Msa0146340 | Msa0479430 | 0.816062 | 6.712611e-52 | -8.615850e-47 |
Msa0172070 | Msa0479430 | 0.807329 | 5.330023e-50 | -8.615850e-47 |
Msa0187690 | Msa0479430 | 0.826166 | 3.149774e-54 | -8.615850e-47 |
Msa0187930 | Msa0479430 | 0.813550 | 2.418779e-51 | -8.615850e-47 |
Msa0194540 | Msa0479430 | 0.809256 | 2.070235e-50 | -8.615850e-47 |
Msa0385300 | Msa0479430 | 0.875322 | 3.376708e-68 | -8.615850e-47 |
Msa0479430 | Msa0523120 | 0.901777 | 1.901494e-78 | -8.615850e-47 |
Msa0479430 | Msa0526540 | 0.811744 | 6.006938e-51 | -8.615850e-47 |
Msa0479430 | Msa0576940 | 0.822599 | 2.173111e-53 | -8.615850e-47 |
Msa0479430 | Msa0615440 | 0.804322 | 2.283601e-49 | -8.615850e-47 |
Msa0479430 | Msa0698490 | 0.805090 | 1.578430e-49 | -8.615850e-47 |
Msa0479430 | Msa0698660 | 0.809428 | 1.901866e-50 | -8.615850e-47 |
Msa0479430 | Msa1019240 | 0.803810 | 2.918174e-49 | -8.615850e-47 |
Msa0479430 | Msa1043690 | 0.844473 | 7.399705e-59 | -8.615850e-47 |
Msa0479430 | Msa1081150 | 0.809551 | 1.788943e-50 | -8.615850e-47 |
Msa0479430 | Msa1104140 | 0.838066 | 3.585673e-57 | -8.615850e-47 |
Msa0479430 | Msa1104210 | 0.812231 | 4.705187e-51 | -8.615850e-47 |
Msa0479430 | Msa1143650 | 0.801508 | 8.712342e-49 | -8.615850e-47 |
Msa0479430 | Msa1363330 | 0.812561 | 3.984339e-51 | -8.615850e-47 |
Msa0479430 | Msa1374120 | 0.834133 | 3.574180e-56 | -8.615850e-47 |
Msa0479430 | Msa1382620 | 0.800610 | 1.329218e-48 | -8.615850e-47 |
Msa0479430 | Msa1386600 | 0.812498 | 4.112668e-51 | -8.615850e-47 |
Msa0479430 | Msa1394290 | 0.806243 | 9.041676e-50 | -8.615850e-47 |
Msa0479430 | Msa1399530 | 0.816256 | 6.075017e-52 | -8.615850e-47 |
Msa0479430 | Msa1448690 | 0.824344 | 8.492247e-54 | -8.615850e-47 |
Msa0244780 | Msa0479430 | 0.819926 | 8.987677e-53 | -8.615850e-47 |
Msa0268130 | Msa0479430 | 0.814360 | 1.602839e-51 | -8.615850e-47 |
Msa0289580 | Msa0479430 | 0.809663 | 1.693295e-50 | -8.615850e-47 |
Msa0289610 | Msa0479430 | 0.820120 | 8.110822e-53 | -8.615850e-47 |
Msa0298990 | Msa0479430 | 0.818800 | 1.622334e-52 | -8.615850e-47 |
Msa0327300 | Msa0479430 | 0.827861 | 1.238323e-54 | -8.615850e-47 |
Msa0327330 | Msa0479430 | 0.838029 | 3.665471e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0479430 | MtrunA17_Chr3g0142711 | 91.288 | 264 | 22 | 1 | 1 | 264 | 1 | 263 | 2.39e-96 | 283 |
Msa0479430 | MtrunA17_Chr3g0140151 | 51.961 | 102 | 47 | 1 | 117 | 218 | 97 | 196 | 1.73e-27 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0479430 | AT1G19990.1 | 43.750 | 272 | 116 | 10 | 2 | 261 | 3 | 249 | 8.76e-37 | 131 |
Msa0479430 | AT5G11600.2 | 58.750 | 80 | 33 | 0 | 112 | 191 | 114 | 193 | 4.52e-26 | 102 |
Msa0479430 | AT5G11600.1 | 58.750 | 80 | 33 | 0 | 112 | 191 | 114 | 193 | 4.52e-26 | 102 |
Find 65 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATAATTGACGAATTAA+AGG | 0.232622 | 3_3:+84440565 | None:intergenic |
ACTTTCTTTGCCACCTCTTT+AGG | 0.245967 | 3_3:+84441027 | None:intergenic |
CAACGGTAAACCCCTTTCTA+AGG | 0.258341 | 3_3:-84443730 | Msa0479430:CDS |
TTTCTTAATTGTAACAGATT+TGG | 0.302366 | 3_3:+84440924 | None:intergenic |
ACAGCAGTTACAGACTTAAC+AGG | 0.336791 | 3_3:+84440958 | None:intergenic |
TTTGTGAACAATCGATTCTA+AGG | 0.355684 | 3_3:+84443834 | None:intergenic |
TGCTTTGATGTGGAGTTTGT+TGG | 0.359320 | 3_3:+84440862 | None:intergenic |
ACGGAAGAATTTGGGGTAGC+TGG | 0.368565 | 3_3:+84440895 | None:intergenic |
AACTGCAGGTTGATGGAATC+AGG | 0.375812 | 3_3:-84441057 | Msa0479430:intron |
ATAATAACATAAATTGCATT+TGG | 0.387140 | 3_3:-84440478 | Msa0479430:three_prime_UTR |
TTGGTGACACAAAACTTGTA+AGG | 0.394895 | 3_3:-84440676 | Msa0479430:three_prime_UTR |
ATTTGTGCCATTTCGCTAGT+TGG | 0.401961 | 3_3:+84443181 | None:intergenic |
CTAGCGAAATGGCACAAATC+TGG | 0.411971 | 3_3:-84443177 | Msa0479430:intron |
GTGGCACGAGGAATGGGTTC+AGG | 0.420548 | 3_3:+84443675 | None:intergenic |
CTGGGGCAAAAGCATAAATC+TGG | 0.420706 | 3_3:+84440416 | None:intergenic |
CTTCTCGTTCCAAAGTTAAG+AGG | 0.423874 | 3_3:-84443647 | Msa0479430:CDS |
TGATTGCAACTGCAGGTTGA+TGG | 0.428702 | 3_3:-84441064 | Msa0479430:intron |
TCAGATTTGTGCTTCTTGGT+TGG | 0.428762 | 3_3:+84440820 | None:intergenic |
AAAGAAGAAGGTAAAGAAAG+AGG | 0.432786 | 3_3:-84443424 | Msa0479430:CDS |
CTTGAGTTCCCTCTTAACTT+TGG | 0.435585 | 3_3:+84443638 | None:intergenic |
AGCTGAAGTGGCACGAGGAA+TGG | 0.440315 | 3_3:+84443668 | None:intergenic |
GTCTCGTAGAAAACCCTAGA+AGG | 0.445303 | 3_3:+84443220 | None:intergenic |
ATAAATTGCATTTGGCAGAA+AGG | 0.449679 | 3_3:-84440470 | Msa0479430:three_prime_UTR |
GGTGAAGATGAACAAGGTTT+GGG | 0.454900 | 3_3:+84443873 | None:intergenic |
GAAGGTTAAGAAAGTAAAGA+AGG | 0.462009 | 3_3:-84443379 | Msa0479430:CDS |
AGGTGAAGATGAACAAGGTT+TGG | 0.463475 | 3_3:+84443872 | None:intergenic |
GAAGGTAAAGAAAGAGGAAG+AGG | 0.464209 | 3_3:-84443418 | Msa0479430:CDS |
GCTGAAGTGGCACGAGGAAT+GGG | 0.464474 | 3_3:+84443669 | None:intergenic |
CGGAAGAATTTGGGGTAGCT+GGG | 0.468663 | 3_3:+84440896 | None:intergenic |
ACAAATTCCAACTAGCGAAA+TGG | 0.472854 | 3_3:-84443188 | Msa0479430:CDS |
GACATAAGCGATTCTGAAGA+AGG | 0.482635 | 3_3:-84443908 | Msa0479430:five_prime_UTR |
TTAGAAAGGGGTTTACCGTT+GGG | 0.482681 | 3_3:+84443732 | None:intergenic |
GTGTCACCAACAACAAATGC+CGG | 0.491011 | 3_3:+84440689 | None:intergenic |
TTTGTCATCGTCGTCTTCGT+CGG | 0.494023 | 3_3:+84443599 | None:intergenic |
CTTAGAAAGGGGTTTACCGT+TGG | 0.503604 | 3_3:+84443731 | None:intergenic |
GGTGGATCACGTTTCTGTCC+AGG | 0.503762 | 3_3:+84443345 | None:intergenic |
ATCAGGCTTGCTTCCTAAAG+AGG | 0.510477 | 3_3:-84441040 | Msa0479430:CDS |
ATTGTTATGCAAACCTCTGC+AGG | 0.514578 | 3_3:+84443324 | None:intergenic |
TGTCACCAACAACAAATGCC+GGG | 0.520299 | 3_3:+84440690 | None:intergenic |
TGTGCTGTGTTAGGTTGTGA+AGG | 0.525327 | 3_3:-84443460 | Msa0479430:intron |
GGTTGTTGTTAGAGAAACGA+AGG | 0.534615 | 3_3:-84443397 | Msa0479430:CDS |
ATTCTAAGGTTCAATGTGGA+TGG | 0.542258 | 3_3:+84443848 | None:intergenic |
AAGAAGGTTTATGATTTACC+TGG | 0.546770 | 3_3:-84443363 | Msa0479430:CDS |
AAAGAAAGCTCTGCAGCAGA+AGG | 0.552066 | 3_3:-84440989 | Msa0479430:CDS |
AACGGTAAACCCCTTTCTAA+GGG | 0.555197 | 3_3:-84443729 | Msa0479430:CDS |
GGAGTTTGTCTGCTTTGATG+TGG | 0.556824 | 3_3:+84440852 | None:intergenic |
TGGTGACACAAAACTTGTAA+GGG | 0.558331 | 3_3:-84440675 | Msa0479430:three_prime_UTR |
CTTCTTGGTTGGCTTCGATG+TGG | 0.562372 | 3_3:+84440831 | None:intergenic |
ACGAATTAAAGGTCTACAGC+AGG | 0.562539 | 3_3:+84440576 | None:intergenic |
TTCTCGTTCCAAAGTTAAGA+GGG | 0.573394 | 3_3:-84443646 | Msa0479430:CDS |
TAAGGTTCAATGTGGATGGA+AGG | 0.579955 | 3_3:+84443852 | None:intergenic |
ACAGGTTTCGAATCTTCAGA+AGG | 0.581427 | 3_3:+84443807 | None:intergenic |
CAAAGTTAAGAGGGAACTCA+AGG | 0.601249 | 3_3:-84443637 | Msa0479430:CDS |
TTTGGAACGAGAAGCTGAAG+TGG | 0.604596 | 3_3:+84443656 | None:intergenic |
GTCACCAACAACAAATGCCG+GGG | 0.615591 | 3_3:+84440691 | None:intergenic |
AAACTTGTAAGGGGCACATG+AGG | 0.627146 | 3_3:-84440665 | Msa0479430:three_prime_UTR |
GAAACGTGATCCACCTGCAG+AGG | 0.633728 | 3_3:-84443337 | Msa0479430:intron |
CGAGAAGCTGAAGTGGCACG+AGG | 0.634997 | 3_3:+84443663 | None:intergenic |
ATCTGAAAATTCGAGCTCTG+AGG | 0.636255 | 3_3:-84440803 | Msa0479430:CDS |
AGGCTTGCTTCCTAAAGAGG+TGG | 0.651439 | 3_3:-84441037 | Msa0479430:CDS |
GTTATGCAAACCTCTGCAGG+TGG | 0.653027 | 3_3:+84443327 | None:intergenic |
GGTGACACAAAACTTGTAAG+GGG | 0.653765 | 3_3:-84440674 | Msa0479430:three_prime_UTR |
ATCGATTCTAAGGTTCAATG+TGG | 0.658585 | 3_3:+84443844 | None:intergenic |
ATGGAAGGTGAAGATGAACA+AGG | 0.690504 | 3_3:+84443867 | None:intergenic |
TCACCAACAACAAATGCCGG+GGG | 0.698115 | 3_3:+84440692 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATTATATACAGTTTA+AGG | - | chr3_3:84442122-84442141 | Msa0479430:intron | 10.0% |
!!! | CTTTTTTTTACTTTTCTTTT+GGG | - | chr3_3:84442309-84442328 | Msa0479430:intron | 15.0% |
!!! | TTTTTTTTACTTTTCTTTTG+GGG | - | chr3_3:84442310-84442329 | Msa0479430:intron | 15.0% |
!!! | ATTACATTCTTTTAGATATT+TGG | + | chr3_3:84443167-84443186 | None:intergenic | 15.0% |
!! | ATCCTAATATTTAAAAATGT+TGG | - | chr3_3:84443845-84443864 | Msa0479430:five_prime_UTR | 15.0% |
!!! | TACCAACATTTTTAAATATT+AGG | + | chr3_3:84443850-84443869 | None:intergenic | 15.0% |
!! | ATAATAACATAAATTGCATT+TGG | - | chr3_3:84443880-84443899 | Msa0479430:five_prime_UTR | 15.0% |
!!! | TTTTTTTTCTCTCTTGTTTT+CGG | + | chr3_3:84440429-84440448 | None:intergenic | 20.0% |
!!! | CTATTTTAGAAATGTATGTT+CGG | - | chr3_3:84440860-84440879 | Msa0479430:CDS | 20.0% |
!! | AATTGCAATTCATCATATTT+AGG | - | chr3_3:84441252-84441271 | Msa0479430:intron | 20.0% |
!! | ATTGCAATTCATCATATTTA+GGG | - | chr3_3:84441253-84441272 | Msa0479430:intron | 20.0% |
!! | ATTAAGATGTTTATCCAAAT+AGG | - | chr3_3:84441497-84441516 | Msa0479430:intron | 20.0% |
!! | AAAATTGTTAAAGTCCTATT+TGG | + | chr3_3:84441514-84441533 | None:intergenic | 20.0% |
!!! | AATAGGACTTTAACAATTTT+AGG | - | chr3_3:84441514-84441533 | Msa0479430:intron | 20.0% |
!!! | GCTTTTTTTTACTTTTCTTT+TGG | - | chr3_3:84442308-84442327 | Msa0479430:intron | 20.0% |
!!! | ACCAATTTAAAATGATATGA+GGG | + | chr3_3:84442946-84442965 | None:intergenic | 20.0% |
!!! | AACCAATTTAAAATGATATG+AGG | + | chr3_3:84442947-84442966 | None:intergenic | 20.0% |
!! | TTTCTTAATTGTAACAGATT+TGG | + | chr3_3:84443437-84443456 | None:intergenic | 20.0% |
!!! | TTTTTTTCTCTCTTGTTTTC+GGG | + | chr3_3:84440428-84440447 | None:intergenic | 25.0% |
! | AACATAAAAACGAACTGAAA+AGG | + | chr3_3:84441083-84441102 | None:intergenic | 25.0% |
! | AGCTACATTCATAAATTACA+TGG | + | chr3_3:84441368-84441387 | None:intergenic | 25.0% |
! | AATGTAGCTTATAGCTTATA+CGG | - | chr3_3:84441379-84441398 | Msa0479430:intron | 25.0% |
!!! | ACTTTAACAATTTTAGGAGT+TGG | - | chr3_3:84441520-84441539 | Msa0479430:intron | 25.0% |
! | TAAGTTTAATTGCTAGACTT+TGG | - | chr3_3:84441545-84441564 | Msa0479430:intron | 25.0% |
! | GCAATTTAATATATTTCCAG+GGG | + | chr3_3:84442055-84442074 | None:intergenic | 25.0% |
! | CGCAATTTAATATATTTCCA+GGG | + | chr3_3:84442056-84442075 | None:intergenic | 25.0% |
! | ATATAATATATAACCCTGTG+AGG | + | chr3_3:84442114-84442133 | None:intergenic | 25.0% |
!! | ATGTGTAATGACTTGTATTT+AGG | - | chr3_3:84442148-84442167 | Msa0479430:intron | 25.0% |
! | CAAATCAAATATAGACAGTA+AGG | + | chr3_3:84442450-84442469 | None:intergenic | 25.0% |
!! | GTTAAGTTGTTTATATCCTT+TGG | - | chr3_3:84442525-84442544 | Msa0479430:intron | 25.0% |
! | GTTTATATCCTTTGGATTAA+CGG | - | chr3_3:84442533-84442552 | Msa0479430:intron | 25.0% |
!!! | TTTTGTTGTTTTCTTGTCTT+AGG | - | chr3_3:84442559-84442578 | Msa0479430:intron | 25.0% |
!!! | GTTTGATTTGTTAACTATGA+AGG | - | chr3_3:84442680-84442699 | Msa0479430:intron | 25.0% |
! | TTGAAACATAAGACAAGTAT+AGG | - | chr3_3:84442750-84442769 | Msa0479430:intron | 25.0% |
!!! | TGAGCTTTGTTATTTGATTT+TGG | - | chr3_3:84442783-84442802 | Msa0479430:intron | 25.0% |
!!! | GAGCTTTGTTATTTGATTTT+GGG | - | chr3_3:84442784-84442803 | Msa0479430:intron | 25.0% |
!!! | AGCTTTGTTATTTGATTTTG+GGG | - | chr3_3:84442785-84442804 | Msa0479430:intron | 25.0% |
!! | CCAATTTAAAATGATATGAG+GGG | + | chr3_3:84442945-84442964 | None:intergenic | 25.0% |
!!! | AGGTTGTCTTGTTTAAATAA+GGG | + | chr3_3:84443075-84443094 | None:intergenic | 25.0% |
!! | TCTTTTTAACGGAAGAATTT+GGG | + | chr3_3:84443474-84443493 | None:intergenic | 25.0% |
!! | TTCTTTTTAACGGAAGAATT+TGG | + | chr3_3:84443475-84443494 | None:intergenic | 25.0% |
! | AACAAAAAAGAAGAGAAAAG+TGG | - | chr3_3:84443609-84443628 | Msa0479430:CDS | 25.0% |
! | TTGCATAATTGACGAATTAA+AGG | + | chr3_3:84443796-84443815 | None:intergenic | 25.0% |
! | ATTCCTCTCCAAAAAAATTA+GGG | + | chr3_3:84443827-84443846 | None:intergenic | 25.0% |
! | TTTGTGAACAATCGATTCTA+AGG | + | chr3_3:84440527-84440546 | None:intergenic | 30.0% |
!! | TTGGATATCTTTTTGGAGAT+AGG | + | chr3_3:84440785-84440804 | None:intergenic | 30.0% |
!!! | CTTGGTTTTGGATATCTTTT+TGG | + | chr3_3:84440792-84440811 | None:intergenic | 30.0% |
CAAAAAGATATCCAAAACCA+AGG | - | chr3_3:84440790-84440809 | Msa0479430:CDS | 30.0% | |
! | AGAATTTCGATTTTGTACCT+TGG | + | chr3_3:84440810-84440829 | None:intergenic | 30.0% |
AGAAGTGAAGAAAAAGAAGA+AGG | - | chr3_3:84440922-84440941 | Msa0479430:CDS | 30.0% | |
AAAGAAGAAGGTAAAGAAAG+AGG | - | chr3_3:84440934-84440953 | Msa0479430:CDS | 30.0% | |
GAAGGTTAAGAAAGTAAAGA+AGG | - | chr3_3:84440979-84440998 | Msa0479430:CDS | 30.0% | |
AAGAAGGTTTATGATTTACC+TGG | - | chr3_3:84440995-84441014 | Msa0479430:CDS | 30.0% | |
!!! | TTTTTTAGAGAGATCCTTCT+AGG | - | chr3_3:84441124-84441143 | Msa0479430:intron | 30.0% |
!! | TTTTTAGAGAGATCCTTCTA+GGG | - | chr3_3:84441125-84441144 | Msa0479430:intron | 30.0% |
AACAGAAACATAAGCAGAAT+AGG | + | chr3_3:84441221-84441240 | None:intergenic | 30.0% | |
! | CAATTCATCATATTTAGGGT+CGG | - | chr3_3:84441257-84441276 | Msa0479430:intron | 30.0% |
TAAATTACATGGAGAGCTTA+TGG | + | chr3_3:84441357-84441376 | None:intergenic | 30.0% | |
CACTTCATAATTCACATTCA+TGG | + | chr3_3:84441593-84441612 | None:intergenic | 30.0% | |
TACTTGTGAATTCGATTAAG+AGG | - | chr3_3:84441669-84441688 | Msa0479430:intron | 30.0% | |
AAAGTGCATTTGAATGGAAA+GGG | + | chr3_3:84441901-84441920 | None:intergenic | 30.0% | |
TTGTACAAAGTGCATTTGAA+TGG | + | chr3_3:84441907-84441926 | None:intergenic | 30.0% | |
!! | AAAAGTACTCTTTGAGTCTA+AGG | + | chr3_3:84442005-84442024 | None:intergenic | 30.0% |
GCGCAATTTAATATATTTCC+AGG | + | chr3_3:84442057-84442076 | None:intergenic | 30.0% | |
! | ATGCTATTATTTTCCTCACA+GGG | - | chr3_3:84442098-84442117 | Msa0479430:intron | 30.0% |
TAAAACCAGAAGCCAATTTA+AGG | - | chr3_3:84442171-84442190 | Msa0479430:intron | 30.0% | |
AATCACTTCTGTCCTTAAAT+TGG | + | chr3_3:84442186-84442205 | None:intergenic | 30.0% | |
AGAATTTACACAAACACAAG+GGG | + | chr3_3:84442213-84442232 | None:intergenic | 30.0% | |
GAGAATTTACACAAACACAA+GGG | + | chr3_3:84442214-84442233 | None:intergenic | 30.0% | |
AGAGAATTTACACAAACACA+AGG | + | chr3_3:84442215-84442234 | None:intergenic | 30.0% | |
GTGTAAATTCTCTCAAATGA+TGG | - | chr3_3:84442222-84442241 | Msa0479430:intron | 30.0% | |
CAAAATAACCGTTAATCCAA+AGG | + | chr3_3:84442544-84442563 | None:intergenic | 30.0% | |
!! | TCTTAGGTCAGAGTTATTTT+AGG | - | chr3_3:84442575-84442594 | Msa0479430:intron | 30.0% |
TAACAAATCAAACACCTGTT+AGG | + | chr3_3:84442673-84442692 | None:intergenic | 30.0% | |
! | AGGTGGAGATTTTTATGTTT+TGG | + | chr3_3:84442850-84442869 | None:intergenic | 30.0% |
! | TTTAAAATGATATGAGGGGA+TGG | + | chr3_3:84442941-84442960 | None:intergenic | 30.0% |
! | CCCCTCATATCATTTTAAAT+TGG | - | chr3_3:84442942-84442961 | Msa0479430:intron | 30.0% |
ATGCTCGTATTATAGTCTAA+TGG | - | chr3_3:84443043-84443062 | Msa0479430:intron | 30.0% | |
!! | CAGGTTGTCTTGTTTAAATA+AGG | + | chr3_3:84443076-84443095 | None:intergenic | 30.0% |
GAAATGTGTATCATCAAAAC+TGG | - | chr3_3:84443187-84443206 | Msa0479430:CDS | 30.0% | |
!!! | ATAGAGCGTAGAAGATTTTT+TGG | - | chr3_3:84443262-84443281 | Msa0479430:intron | 30.0% |
! | CTTTTTAACGGAAGAATTTG+GGG | + | chr3_3:84443473-84443492 | None:intergenic | 30.0% |
!!! | GTTTGTTGGCTTCTTTTTAA+CGG | + | chr3_3:84443485-84443504 | None:intergenic | 30.0% |
! | ATTTTCAGATTTGTGCTTCT+TGG | + | chr3_3:84443545-84443564 | None:intergenic | 30.0% |
!! | GATGATTCTGATTTTGACAT+TGG | - | chr3_3:84443580-84443599 | Msa0479430:CDS | 30.0% |
!!! | ACAATCCACCCTAATTTTTT+TGG | - | chr3_3:84443816-84443835 | Msa0479430:exon | 30.0% |
GATTCCTCTCCAAAAAAATT+AGG | + | chr3_3:84443828-84443847 | None:intergenic | 30.0% | |
ATAAATTGCATTTGGCAGAA+AGG | - | chr3_3:84443888-84443907 | Msa0479430:five_prime_UTR | 30.0% | |
!! | ATTCTAAGGTTCAATGTGGA+TGG | + | chr3_3:84440513-84440532 | None:intergenic | 35.0% |
!! | ATCGATTCTAAGGTTCAATG+TGG | + | chr3_3:84440517-84440536 | None:intergenic | 35.0% |
!!! | TTGTCGTCTTGTTTTTTCAC+AGG | + | chr3_3:84440572-84440591 | None:intergenic | 35.0% |
!!! | AGTTTTGAACCCTTAGAAAG+GGG | + | chr3_3:84440641-84440660 | None:intergenic | 35.0% |
!!! | GAGTTTTGAACCCTTAGAAA+GGG | + | chr3_3:84440642-84440661 | None:intergenic | 35.0% |
!!! | TGAGTTTTGAACCCTTAGAA+AGG | + | chr3_3:84440643-84440662 | None:intergenic | 35.0% |
TTCTCGTTCCAAAGTTAAGA+GGG | - | chr3_3:84440712-84440731 | Msa0479430:three_prime_UTR | 35.0% | |
! | TCGATTTTGTACCTTGGTTT+TGG | + | chr3_3:84440804-84440823 | None:intergenic | 35.0% |
!! | TTAGAGTATTGTGCTGTGTT+AGG | - | chr3_3:84440889-84440908 | Msa0479430:CDS | 35.0% |
ACAAATTCCAACTAGCGAAA+TGG | - | chr3_3:84441170-84441189 | Msa0479430:intron | 35.0% | |
!!! | TTGTGACTTTTGAGACTGTT+TGG | - | chr3_3:84441311-84441330 | Msa0479430:intron | 35.0% |
AATTGTCTTCCATTCACAGT+TGG | + | chr3_3:84441718-84441737 | None:intergenic | 35.0% | |
ACTGATAAAATGAGACCCTA+AGG | + | chr3_3:84441814-84441833 | None:intergenic | 35.0% | |
CAAAGTGCATTTGAATGGAA+AGG | + | chr3_3:84441902-84441921 | None:intergenic | 35.0% | |
GGCTCACATTCAAACATAAA+GGG | + | chr3_3:84441984-84442003 | None:intergenic | 35.0% | |
AGGCTCACATTCAAACATAA+AGG | + | chr3_3:84441985-84442004 | None:intergenic | 35.0% | |
! | CATGCTATTATTTTCCTCAC+AGG | - | chr3_3:84442097-84442116 | Msa0479430:intron | 35.0% |
GTGTATGATTATCTACGAGT+TGG | + | chr3_3:84442355-84442374 | None:intergenic | 35.0% | |
ACTCGTAGATAATCATACAC+CGG | - | chr3_3:84442355-84442374 | Msa0479430:intron | 35.0% | |
AACAAGCGAACAAATGCATA+AGG | + | chr3_3:84442427-84442446 | None:intergenic | 35.0% | |
AAAGAGTGATGTCAGATCTA+GGG | + | chr3_3:84442491-84442510 | None:intergenic | 35.0% | |
CATGGAGAATACACAGAAAA+AGG | + | chr3_3:84442870-84442889 | None:intergenic | 35.0% | |
TAAATTGGTTGTGCTGTACA+TGG | - | chr3_3:84442957-84442976 | Msa0479430:intron | 35.0% | |
ACAATACAATGCCAGTAACT+GGG | + | chr3_3:84443020-84443039 | None:intergenic | 35.0% | |
AACAATACAATGCCAGTAAC+TGG | + | chr3_3:84443021-84443040 | None:intergenic | 35.0% | |
CTACCAGACAAGATAAGAAA+AGG | + | chr3_3:84443124-84443143 | None:intergenic | 35.0% | |
TTCTTATCTTGTCTGGTAGA+AGG | - | chr3_3:84443125-84443144 | Msa0479430:intron | 35.0% | |
GTAGAAGGAGTAAAAGCTAT+CGG | - | chr3_3:84443140-84443159 | Msa0479430:intron | 35.0% | |
!!! | ATTTGCAATGTTTTTTCCCC+CGG | - | chr3_3:84443650-84443669 | Msa0479430:CDS | 35.0% |
! | TTGGTGACACAAAACTTGTA+AGG | - | chr3_3:84443682-84443701 | Msa0479430:CDS | 35.0% |
TGGTGACACAAAACTTGTAA+GGG | - | chr3_3:84443683-84443702 | Msa0479430:CDS | 35.0% | |
! | GACATAAGCGATTCTGAAGA+AGG | - | chr3_3:84440450-84440469 | Msa0479430:three_prime_UTR | 40.0% |
GGTGAAGATGAACAAGGTTT+GGG | + | chr3_3:84440488-84440507 | None:intergenic | 40.0% | |
AGGTGAAGATGAACAAGGTT+TGG | + | chr3_3:84440489-84440508 | None:intergenic | 40.0% | |
ATGGAAGGTGAAGATGAACA+AGG | + | chr3_3:84440494-84440513 | None:intergenic | 40.0% | |
TAAGGTTCAATGTGGATGGA+AGG | + | chr3_3:84440509-84440528 | None:intergenic | 40.0% | |
ACAGGTTTCGAATCTTCAGA+AGG | + | chr3_3:84440554-84440573 | None:intergenic | 40.0% | |
AAAAAAGCCGCAAAACCCAA+CGG | - | chr3_3:84440611-84440630 | Msa0479430:three_prime_UTR | 40.0% | |
TTAGAAAGGGGTTTACCGTT+GGG | + | chr3_3:84440629-84440648 | None:intergenic | 40.0% | |
AACGGTAAACCCCTTTCTAA+GGG | - | chr3_3:84440629-84440648 | Msa0479430:three_prime_UTR | 40.0% | |
CTTCTCGTTCCAAAGTTAAG+AGG | - | chr3_3:84440711-84440730 | Msa0479430:three_prime_UTR | 40.0% | |
CTTGAGTTCCCTCTTAACTT+TGG | + | chr3_3:84440723-84440742 | None:intergenic | 40.0% | |
CAAAGTTAAGAGGGAACTCA+AGG | - | chr3_3:84440721-84440740 | Msa0479430:three_prime_UTR | 40.0% | |
GAAGGTAAAGAAAGAGGAAG+AGG | - | chr3_3:84440940-84440959 | Msa0479430:CDS | 40.0% | |
! | GGTTGTTGTTAGAGAAACGA+AGG | - | chr3_3:84440961-84440980 | Msa0479430:CDS | 40.0% |
ATTGTTATGCAAACCTCTGC+AGG | + | chr3_3:84441037-84441056 | None:intergenic | 40.0% | |
!! | ATTTGTGCCATTTCGCTAGT+TGG | + | chr3_3:84441180-84441199 | None:intergenic | 40.0% |
CAAATCTGGTGAGTTCTCAA+CGG | - | chr3_3:84441195-84441214 | Msa0479430:intron | 40.0% | |
! | TGGTGATAGTGTTCTTGCAA+GGG | + | chr3_3:84441573-84441592 | None:intergenic | 40.0% |
! | ATGGTGATAGTGTTCTTGCA+AGG | + | chr3_3:84441574-84441593 | None:intergenic | 40.0% |
AATGACATGCCAACTGTGAA+TGG | - | chr3_3:84441706-84441725 | Msa0479430:intron | 40.0% | |
TTTGTTCCACGACACTTGTT+TGG | - | chr3_3:84441759-84441778 | Msa0479430:intron | 40.0% | |
TTCAAACCTCCAAATGCCTT+AGG | - | chr3_3:84441795-84441814 | Msa0479430:intron | 40.0% | |
TCAAACCTCCAAATGCCTTA+GGG | - | chr3_3:84441796-84441815 | Msa0479430:intron | 40.0% | |
! | AAATGAGACCCTAAGGCATT+TGG | + | chr3_3:84441807-84441826 | None:intergenic | 40.0% |
AGTGAGCTTAATTCCCTGTA+CGG | - | chr3_3:84441831-84441850 | Msa0479430:intron | 40.0% | |
AACCAATTCTACACCGTACA+GGG | + | chr3_3:84441847-84441866 | None:intergenic | 40.0% | |
AAACCAATTCTACACCGTAC+AGG | + | chr3_3:84441848-84441867 | None:intergenic | 40.0% | |
! | GGTTTTGCTGATGTGTACAA+AGG | - | chr3_3:84441863-84441882 | Msa0479430:intron | 40.0% |
TAATATATTTCCAGGGGCCT+GGG | + | chr3_3:84442049-84442068 | None:intergenic | 40.0% | |
TTAATATATTTCCAGGGGCC+TGG | + | chr3_3:84442050-84442069 | None:intergenic | 40.0% | |
! | TCTGTCCTTAAATTGGCTTC+TGG | + | chr3_3:84442179-84442198 | None:intergenic | 40.0% |
CTCTCAAATGATGGTTGTGA+TGG | - | chr3_3:84442231-84442250 | Msa0479430:intron | 40.0% | |
!!! | CCTCGCATAGTTTTGTTTTC+AGG | + | chr3_3:84442258-84442277 | None:intergenic | 40.0% |
CCTGAAAACAAAACTATGCG+AGG | - | chr3_3:84442255-84442274 | Msa0479430:intron | 40.0% | |
! | TTATCTACGAGTTGGAATGC+TGG | + | chr3_3:84442347-84442366 | None:intergenic | 40.0% |
AAATGCATAAGGCCTGATAG+TGG | + | chr3_3:84442416-84442435 | None:intergenic | 40.0% | |
CAAAGAGTGATGTCAGATCT+AGG | + | chr3_3:84442492-84442511 | None:intergenic | 40.0% | |
GTTAGGTAATTGCAACTGCA+AGG | + | chr3_3:84442656-84442675 | None:intergenic | 40.0% | |
TGCAGTTGCAATTACCTAAC+AGG | - | chr3_3:84442656-84442675 | Msa0479430:intron | 40.0% | |
GGAGAATACACAGAAAAAGG+TGG | + | chr3_3:84442867-84442886 | None:intergenic | 40.0% | |
TATGAGGGGATGGAATAACA+GGG | + | chr3_3:84442931-84442950 | None:intergenic | 40.0% | |
ATATGAGGGGATGGAATAAC+AGG | + | chr3_3:84442932-84442951 | None:intergenic | 40.0% | |
AGGAAAATTCAATCTGCAGC+AGG | + | chr3_3:84443095-84443114 | None:intergenic | 40.0% | |
AAGATAAGAAAAGGCGGGAA+AGG | + | chr3_3:84443115-84443134 | None:intergenic | 40.0% | |
CAGACAAGATAAGAAAAGGC+GGG | + | chr3_3:84443120-84443139 | None:intergenic | 40.0% | |
CCAGACAAGATAAGAAAAGG+CGG | + | chr3_3:84443121-84443140 | None:intergenic | 40.0% | |
ACTTTCTTTGCCACCTCTTT+AGG | + | chr3_3:84443334-84443353 | None:intergenic | 40.0% | |
ACAGCAGTTACAGACTTAAC+AGG | + | chr3_3:84443403-84443422 | None:intergenic | 40.0% | |
TGCTTTGATGTGGAGTTTGT+TGG | + | chr3_3:84443499-84443518 | None:intergenic | 40.0% | |
TCAGATTTGTGCTTCTTGGT+TGG | + | chr3_3:84443541-84443560 | None:intergenic | 40.0% | |
ATCTGAAAATTCGAGCTCTG+AGG | - | chr3_3:84443555-84443574 | Msa0479430:intron | 40.0% | |
GGTGACACAAAACTTGTAAG+GGG | - | chr3_3:84443684-84443703 | Msa0479430:CDS | 40.0% | |
ACGAATTAAAGGTCTACAGC+AGG | + | chr3_3:84443785-84443804 | None:intergenic | 40.0% | |
CCTCTCCAAAAAAATTAGGG+TGG | + | chr3_3:84443824-84443843 | None:intergenic | 40.0% | |
!!! | CCACCCTAATTTTTTTGGAG+AGG | - | chr3_3:84443821-84443840 | Msa0479430:exon | 40.0% |
CTTAGAAAGGGGTTTACCGT+TGG | + | chr3_3:84440630-84440649 | None:intergenic | 45.0% | |
CAACGGTAAACCCCTTTCTA+AGG | - | chr3_3:84440628-84440647 | Msa0479430:three_prime_UTR | 45.0% | |
! | TTTGGAACGAGAAGCTGAAG+TGG | + | chr3_3:84440705-84440724 | None:intergenic | 45.0% |
TTTGTCATCGTCGTCTTCGT+CGG | + | chr3_3:84440762-84440781 | None:intergenic | 45.0% | |
! | TGTGCTGTGTTAGGTTGTGA+AGG | - | chr3_3:84440898-84440917 | Msa0479430:CDS | 45.0% |
GTCTCGTAGAAAACCCTAGA+AGG | + | chr3_3:84441141-84441160 | None:intergenic | 45.0% | |
CTAGCGAAATGGCACAAATC+TGG | - | chr3_3:84441181-84441200 | Msa0479430:intron | 45.0% | |
GTTTCTCAGTCTCTTCTGAG+TGG | + | chr3_3:84441636-84441655 | None:intergenic | 45.0% | |
! | TACAGTCCAAACAAGTGTCG+TGG | + | chr3_3:84441768-84441787 | None:intergenic | 45.0% |
TTCCCTGTACGGTGTAGAAT+TGG | - | chr3_3:84441842-84441861 | Msa0479430:intron | 45.0% | |
TAGAACCGCTAGGAACTACA+GGG | + | chr3_3:84442381-84442400 | None:intergenic | 45.0% | |
TTAGAACCGCTAGGAACTAC+AGG | + | chr3_3:84442382-84442401 | None:intergenic | 45.0% | |
! | GCATGCAATTTAGAACCGCT+AGG | + | chr3_3:84442391-84442410 | None:intergenic | 45.0% |
AATTGCATGCCACCACTATC+AGG | - | chr3_3:84442401-84442420 | Msa0479430:intron | 45.0% | |
GGGAAGAGAGACAAGAAAAG+AGG | + | chr3_3:84442910-84442929 | None:intergenic | 45.0% | |
ATGAGGGGATGGAATAACAG+GGG | + | chr3_3:84442930-84442949 | None:intergenic | 45.0% | |
AGTTGTCGTAACCCAGTTAC+TGG | - | chr3_3:84443006-84443025 | Msa0479430:intron | 45.0% | |
! | CCGCCTTTTCTTATCTTGTC+TGG | - | chr3_3:84443118-84443137 | Msa0479430:intron | 45.0% |
! | TGATTGCAACTGCAGGTTGA+TGG | - | chr3_3:84443294-84443313 | Msa0479430:intron | 45.0% |
!! | AACTGCAGGTTGATGGAATC+AGG | - | chr3_3:84443301-84443320 | Msa0479430:intron | 45.0% |
! | ATCAGGCTTGCTTCCTAAAG+AGG | - | chr3_3:84443318-84443337 | Msa0479430:intron | 45.0% |
AAAGAAAGCTCTGCAGCAGA+AGG | - | chr3_3:84443369-84443388 | Msa0479430:CDS | 45.0% | |
GGAGTTTGTCTGCTTTGATG+TGG | + | chr3_3:84443509-84443528 | None:intergenic | 45.0% | |
TGTCACCAACAACAAATGCC+GGG | + | chr3_3:84443671-84443690 | None:intergenic | 45.0% | |
GTGTCACCAACAACAAATGC+CGG | + | chr3_3:84443672-84443691 | None:intergenic | 45.0% | |
! | AAACTTGTAAGGGGCACATG+AGG | - | chr3_3:84443693-84443712 | Msa0479430:CDS | 45.0% |
!! | AATAAAAAAAAAAAAAAACT+AGG | + | chr3_3:84440837-84440856 | None:intergenic | 5.0% |
!!! | CTCTCTTGTTTTCGGGACTC+CGG | + | chr3_3:84440421-84440440 | None:intergenic | 50.0% |
! | GGGTTTACCGTTGGGTTTTG+CGG | + | chr3_3:84440621-84440640 | None:intergenic | 50.0% |
GTTATGCAAACCTCTGCAGG+TGG | + | chr3_3:84441034-84441053 | None:intergenic | 50.0% | |
! | TGAGACCCTAAGGCATTTGG+AGG | + | chr3_3:84441804-84441823 | None:intergenic | 50.0% |
TATAACACCAAGCCTAGCCC+AGG | - | chr3_3:84442029-84442048 | Msa0479430:intron | 50.0% | |
!! | TGCATAAGGCCTGATAGTGG+TGG | + | chr3_3:84442413-84442432 | None:intergenic | 50.0% |
TCTCCATGACCTTTACCCCA+AGG | - | chr3_3:84442882-84442901 | Msa0479430:intron | 50.0% | |
!! | ACAAGAAAAGAGGCGCCTTG+GGG | + | chr3_3:84442900-84442919 | None:intergenic | 50.0% |
!! | GACAAGAAAAGAGGCGCCTT+GGG | + | chr3_3:84442901-84442920 | None:intergenic | 50.0% |
!! | AGACAAGAAAAGAGGCGCCT+TGG | + | chr3_3:84442902-84442921 | None:intergenic | 50.0% |
! | GCGTTACTGATTGCAACTGC+AGG | - | chr3_3:84443287-84443306 | Msa0479430:intron | 50.0% |
! | AGGCTTGCTTCCTAAAGAGG+TGG | - | chr3_3:84443321-84443340 | Msa0479430:intron | 50.0% |
! | CGGAAGAATTTGGGGTAGCT+GGG | + | chr3_3:84443465-84443484 | None:intergenic | 50.0% |
! | ACGGAAGAATTTGGGGTAGC+TGG | + | chr3_3:84443466-84443485 | None:intergenic | 50.0% |
!! | CTTCTTGGTTGGCTTCGATG+TGG | + | chr3_3:84443530-84443549 | None:intergenic | 50.0% |
!! | TTTCCCCCGGCATTTGTTGT+TGG | - | chr3_3:84443663-84443682 | Msa0479430:CDS | 50.0% |
TCACCAACAACAAATGCCGG+GGG | + | chr3_3:84443669-84443688 | None:intergenic | 50.0% | |
GTCACCAACAACAAATGCCG+GGG | + | chr3_3:84443670-84443689 | None:intergenic | 50.0% | |
GCTGAAGTGGCACGAGGAAT+GGG | + | chr3_3:84440692-84440711 | None:intergenic | 55.0% | |
AGCTGAAGTGGCACGAGGAA+TGG | + | chr3_3:84440693-84440712 | None:intergenic | 55.0% | |
GGTGGATCACGTTTCTGTCC+AGG | + | chr3_3:84441016-84441035 | None:intergenic | 55.0% | |
GAAACGTGATCCACCTGCAG+AGG | - | chr3_3:84441021-84441040 | Msa0479430:CDS | 55.0% | |
!! | AAAGAGGCGCCTTGGGGTAA+AGG | + | chr3_3:84442894-84442913 | None:intergenic | 55.0% |
! | GTGGCACGAGGAATGGGTTC+AGG | + | chr3_3:84440686-84440705 | None:intergenic | 60.0% |
CGAGAAGCTGAAGTGGCACG+AGG | + | chr3_3:84440698-84440717 | None:intergenic | 60.0% | |
TATTTCCAGGGGCCTGGGCT+AGG | + | chr3_3:84442044-84442063 | None:intergenic | 60.0% | |
ACCGGCCCTGTAGTTCCTAG+CGG | - | chr3_3:84442373-84442392 | Msa0479430:intron | 60.0% | |
ACCGCTAGGAACTACAGGGC+CGG | + | chr3_3:84442377-84442396 | None:intergenic | 60.0% | |
GCGCCTTGGGGTAAAGGTCA+TGG | + | chr3_3:84442888-84442907 | None:intergenic | 60.0% | |
! | CCAGGGGCCTGGGCTAGGCT+TGG | + | chr3_3:84442039-84442058 | None:intergenic | 75.0% |
CCAAGCCTAGCCCAGGCCCC+TGG | - | chr3_3:84442036-84442055 | Msa0479430:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 84440418 | 84443962 | 84440418 | ID=Msa0479430;Name=Msa0479430 |
chr3_3 | mRNA | 84440418 | 84443962 | 84440418 | ID=Msa0479430-mRNA-1;Parent=Msa0479430;Name=Msa0479430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=130|1|1|1|1|1|4|326|264 |
chr3_3 | exon | 84440418 | 84441071 | 84440418 | ID=Msa0479430-mRNA-1:exon:23961;Parent=Msa0479430-mRNA-1 |
chr3_3 | exon | 84443178 | 84443248 | 84443178 | ID=Msa0479430-mRNA-1:exon:23960;Parent=Msa0479430-mRNA-1 |
chr3_3 | exon | 84443338 | 84443469 | 84443338 | ID=Msa0479430-mRNA-1:exon:23959;Parent=Msa0479430-mRNA-1 |
chr3_3 | exon | 84443569 | 84443962 | 84443569 | ID=Msa0479430-mRNA-1:exon:23958;Parent=Msa0479430-mRNA-1 |
chr3_3 | five_prime_UTR | 84443833 | 84443962 | 84443833 | ID=Msa0479430-mRNA-1:five_prime_utr;Parent=Msa0479430-mRNA-1 |
chr3_3 | CDS | 84443569 | 84443832 | 84443569 | ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1 |
chr3_3 | CDS | 84443338 | 84443469 | 84443338 | ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1 |
chr3_3 | CDS | 84443178 | 84443248 | 84443178 | ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1 |
chr3_3 | CDS | 84440744 | 84441071 | 84440744 | ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1 |
chr3_3 | three_prime_UTR | 84440418 | 84440743 | 84440418 | ID=Msa0479430-mRNA-1:three_prime_utr;Parent=Msa0479430-mRNA-1 |
Gene Sequence |
Protein sequence |