AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479430 MtrunA17_Chr3g0142711 91.288 264 22 1 1 264 1 263 2.39e-96 283
Msa0479430 MtrunA17_Chr3g0140151 51.961 102 47 1 117 218 97 196 1.73e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479430 AT1G19990.1 43.750 272 116 10 2 261 3 249 8.76e-37 131
Msa0479430 AT5G11600.2 58.750 80 33 0 112 191 114 193 4.52e-26 102
Msa0479430 AT5G11600.1 58.750 80 33 0 112 191 114 193 4.52e-26 102

Find 65 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATAATTGACGAATTAA+AGG 0.232622 3_3:+84440565 None:intergenic
ACTTTCTTTGCCACCTCTTT+AGG 0.245967 3_3:+84441027 None:intergenic
CAACGGTAAACCCCTTTCTA+AGG 0.258341 3_3:-84443730 Msa0479430:CDS
TTTCTTAATTGTAACAGATT+TGG 0.302366 3_3:+84440924 None:intergenic
ACAGCAGTTACAGACTTAAC+AGG 0.336791 3_3:+84440958 None:intergenic
TTTGTGAACAATCGATTCTA+AGG 0.355684 3_3:+84443834 None:intergenic
TGCTTTGATGTGGAGTTTGT+TGG 0.359320 3_3:+84440862 None:intergenic
ACGGAAGAATTTGGGGTAGC+TGG 0.368565 3_3:+84440895 None:intergenic
AACTGCAGGTTGATGGAATC+AGG 0.375812 3_3:-84441057 Msa0479430:intron
ATAATAACATAAATTGCATT+TGG 0.387140 3_3:-84440478 Msa0479430:three_prime_UTR
TTGGTGACACAAAACTTGTA+AGG 0.394895 3_3:-84440676 Msa0479430:three_prime_UTR
ATTTGTGCCATTTCGCTAGT+TGG 0.401961 3_3:+84443181 None:intergenic
CTAGCGAAATGGCACAAATC+TGG 0.411971 3_3:-84443177 Msa0479430:intron
GTGGCACGAGGAATGGGTTC+AGG 0.420548 3_3:+84443675 None:intergenic
CTGGGGCAAAAGCATAAATC+TGG 0.420706 3_3:+84440416 None:intergenic
CTTCTCGTTCCAAAGTTAAG+AGG 0.423874 3_3:-84443647 Msa0479430:CDS
TGATTGCAACTGCAGGTTGA+TGG 0.428702 3_3:-84441064 Msa0479430:intron
TCAGATTTGTGCTTCTTGGT+TGG 0.428762 3_3:+84440820 None:intergenic
AAAGAAGAAGGTAAAGAAAG+AGG 0.432786 3_3:-84443424 Msa0479430:CDS
CTTGAGTTCCCTCTTAACTT+TGG 0.435585 3_3:+84443638 None:intergenic
AGCTGAAGTGGCACGAGGAA+TGG 0.440315 3_3:+84443668 None:intergenic
GTCTCGTAGAAAACCCTAGA+AGG 0.445303 3_3:+84443220 None:intergenic
ATAAATTGCATTTGGCAGAA+AGG 0.449679 3_3:-84440470 Msa0479430:three_prime_UTR
GGTGAAGATGAACAAGGTTT+GGG 0.454900 3_3:+84443873 None:intergenic
GAAGGTTAAGAAAGTAAAGA+AGG 0.462009 3_3:-84443379 Msa0479430:CDS
AGGTGAAGATGAACAAGGTT+TGG 0.463475 3_3:+84443872 None:intergenic
GAAGGTAAAGAAAGAGGAAG+AGG 0.464209 3_3:-84443418 Msa0479430:CDS
GCTGAAGTGGCACGAGGAAT+GGG 0.464474 3_3:+84443669 None:intergenic
CGGAAGAATTTGGGGTAGCT+GGG 0.468663 3_3:+84440896 None:intergenic
ACAAATTCCAACTAGCGAAA+TGG 0.472854 3_3:-84443188 Msa0479430:CDS
GACATAAGCGATTCTGAAGA+AGG 0.482635 3_3:-84443908 Msa0479430:five_prime_UTR
TTAGAAAGGGGTTTACCGTT+GGG 0.482681 3_3:+84443732 None:intergenic
GTGTCACCAACAACAAATGC+CGG 0.491011 3_3:+84440689 None:intergenic
TTTGTCATCGTCGTCTTCGT+CGG 0.494023 3_3:+84443599 None:intergenic
CTTAGAAAGGGGTTTACCGT+TGG 0.503604 3_3:+84443731 None:intergenic
GGTGGATCACGTTTCTGTCC+AGG 0.503762 3_3:+84443345 None:intergenic
ATCAGGCTTGCTTCCTAAAG+AGG 0.510477 3_3:-84441040 Msa0479430:CDS
ATTGTTATGCAAACCTCTGC+AGG 0.514578 3_3:+84443324 None:intergenic
TGTCACCAACAACAAATGCC+GGG 0.520299 3_3:+84440690 None:intergenic
TGTGCTGTGTTAGGTTGTGA+AGG 0.525327 3_3:-84443460 Msa0479430:intron
GGTTGTTGTTAGAGAAACGA+AGG 0.534615 3_3:-84443397 Msa0479430:CDS
ATTCTAAGGTTCAATGTGGA+TGG 0.542258 3_3:+84443848 None:intergenic
AAGAAGGTTTATGATTTACC+TGG 0.546770 3_3:-84443363 Msa0479430:CDS
AAAGAAAGCTCTGCAGCAGA+AGG 0.552066 3_3:-84440989 Msa0479430:CDS
AACGGTAAACCCCTTTCTAA+GGG 0.555197 3_3:-84443729 Msa0479430:CDS
GGAGTTTGTCTGCTTTGATG+TGG 0.556824 3_3:+84440852 None:intergenic
TGGTGACACAAAACTTGTAA+GGG 0.558331 3_3:-84440675 Msa0479430:three_prime_UTR
CTTCTTGGTTGGCTTCGATG+TGG 0.562372 3_3:+84440831 None:intergenic
ACGAATTAAAGGTCTACAGC+AGG 0.562539 3_3:+84440576 None:intergenic
TTCTCGTTCCAAAGTTAAGA+GGG 0.573394 3_3:-84443646 Msa0479430:CDS
TAAGGTTCAATGTGGATGGA+AGG 0.579955 3_3:+84443852 None:intergenic
ACAGGTTTCGAATCTTCAGA+AGG 0.581427 3_3:+84443807 None:intergenic
CAAAGTTAAGAGGGAACTCA+AGG 0.601249 3_3:-84443637 Msa0479430:CDS
TTTGGAACGAGAAGCTGAAG+TGG 0.604596 3_3:+84443656 None:intergenic
GTCACCAACAACAAATGCCG+GGG 0.615591 3_3:+84440691 None:intergenic
AAACTTGTAAGGGGCACATG+AGG 0.627146 3_3:-84440665 Msa0479430:three_prime_UTR
GAAACGTGATCCACCTGCAG+AGG 0.633728 3_3:-84443337 Msa0479430:intron
CGAGAAGCTGAAGTGGCACG+AGG 0.634997 3_3:+84443663 None:intergenic
ATCTGAAAATTCGAGCTCTG+AGG 0.636255 3_3:-84440803 Msa0479430:CDS
AGGCTTGCTTCCTAAAGAGG+TGG 0.651439 3_3:-84441037 Msa0479430:CDS
GTTATGCAAACCTCTGCAGG+TGG 0.653027 3_3:+84443327 None:intergenic
GGTGACACAAAACTTGTAAG+GGG 0.653765 3_3:-84440674 Msa0479430:three_prime_UTR
ATCGATTCTAAGGTTCAATG+TGG 0.658585 3_3:+84443844 None:intergenic
ATGGAAGGTGAAGATGAACA+AGG 0.690504 3_3:+84443867 None:intergenic
TCACCAACAACAAATGCCGG+GGG 0.698115 3_3:+84440692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATATACAGTTTA+AGG - chr3_3:84442122-84442141 Msa0479430:intron 10.0%
!!! CTTTTTTTTACTTTTCTTTT+GGG - chr3_3:84442309-84442328 Msa0479430:intron 15.0%
!!! TTTTTTTTACTTTTCTTTTG+GGG - chr3_3:84442310-84442329 Msa0479430:intron 15.0%
!!! ATTACATTCTTTTAGATATT+TGG + chr3_3:84443167-84443186 None:intergenic 15.0%
!! ATCCTAATATTTAAAAATGT+TGG - chr3_3:84443845-84443864 Msa0479430:five_prime_UTR 15.0%
!!! TACCAACATTTTTAAATATT+AGG + chr3_3:84443850-84443869 None:intergenic 15.0%
!! ATAATAACATAAATTGCATT+TGG - chr3_3:84443880-84443899 Msa0479430:five_prime_UTR 15.0%
!!! TTTTTTTTCTCTCTTGTTTT+CGG + chr3_3:84440429-84440448 None:intergenic 20.0%
!!! CTATTTTAGAAATGTATGTT+CGG - chr3_3:84440860-84440879 Msa0479430:CDS 20.0%
!! AATTGCAATTCATCATATTT+AGG - chr3_3:84441252-84441271 Msa0479430:intron 20.0%
!! ATTGCAATTCATCATATTTA+GGG - chr3_3:84441253-84441272 Msa0479430:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+AGG - chr3_3:84441497-84441516 Msa0479430:intron 20.0%
!! AAAATTGTTAAAGTCCTATT+TGG + chr3_3:84441514-84441533 None:intergenic 20.0%
!!! AATAGGACTTTAACAATTTT+AGG - chr3_3:84441514-84441533 Msa0479430:intron 20.0%
!!! GCTTTTTTTTACTTTTCTTT+TGG - chr3_3:84442308-84442327 Msa0479430:intron 20.0%
!!! ACCAATTTAAAATGATATGA+GGG + chr3_3:84442946-84442965 None:intergenic 20.0%
!!! AACCAATTTAAAATGATATG+AGG + chr3_3:84442947-84442966 None:intergenic 20.0%
!! TTTCTTAATTGTAACAGATT+TGG + chr3_3:84443437-84443456 None:intergenic 20.0%
!!! TTTTTTTCTCTCTTGTTTTC+GGG + chr3_3:84440428-84440447 None:intergenic 25.0%
! AACATAAAAACGAACTGAAA+AGG + chr3_3:84441083-84441102 None:intergenic 25.0%
! AGCTACATTCATAAATTACA+TGG + chr3_3:84441368-84441387 None:intergenic 25.0%
! AATGTAGCTTATAGCTTATA+CGG - chr3_3:84441379-84441398 Msa0479430:intron 25.0%
!!! ACTTTAACAATTTTAGGAGT+TGG - chr3_3:84441520-84441539 Msa0479430:intron 25.0%
! TAAGTTTAATTGCTAGACTT+TGG - chr3_3:84441545-84441564 Msa0479430:intron 25.0%
! GCAATTTAATATATTTCCAG+GGG + chr3_3:84442055-84442074 None:intergenic 25.0%
! CGCAATTTAATATATTTCCA+GGG + chr3_3:84442056-84442075 None:intergenic 25.0%
! ATATAATATATAACCCTGTG+AGG + chr3_3:84442114-84442133 None:intergenic 25.0%
!! ATGTGTAATGACTTGTATTT+AGG - chr3_3:84442148-84442167 Msa0479430:intron 25.0%
! CAAATCAAATATAGACAGTA+AGG + chr3_3:84442450-84442469 None:intergenic 25.0%
!! GTTAAGTTGTTTATATCCTT+TGG - chr3_3:84442525-84442544 Msa0479430:intron 25.0%
! GTTTATATCCTTTGGATTAA+CGG - chr3_3:84442533-84442552 Msa0479430:intron 25.0%
!!! TTTTGTTGTTTTCTTGTCTT+AGG - chr3_3:84442559-84442578 Msa0479430:intron 25.0%
!!! GTTTGATTTGTTAACTATGA+AGG - chr3_3:84442680-84442699 Msa0479430:intron 25.0%
! TTGAAACATAAGACAAGTAT+AGG - chr3_3:84442750-84442769 Msa0479430:intron 25.0%
!!! TGAGCTTTGTTATTTGATTT+TGG - chr3_3:84442783-84442802 Msa0479430:intron 25.0%
!!! GAGCTTTGTTATTTGATTTT+GGG - chr3_3:84442784-84442803 Msa0479430:intron 25.0%
!!! AGCTTTGTTATTTGATTTTG+GGG - chr3_3:84442785-84442804 Msa0479430:intron 25.0%
!! CCAATTTAAAATGATATGAG+GGG + chr3_3:84442945-84442964 None:intergenic 25.0%
!!! AGGTTGTCTTGTTTAAATAA+GGG + chr3_3:84443075-84443094 None:intergenic 25.0%
!! TCTTTTTAACGGAAGAATTT+GGG + chr3_3:84443474-84443493 None:intergenic 25.0%
!! TTCTTTTTAACGGAAGAATT+TGG + chr3_3:84443475-84443494 None:intergenic 25.0%
! AACAAAAAAGAAGAGAAAAG+TGG - chr3_3:84443609-84443628 Msa0479430:CDS 25.0%
! TTGCATAATTGACGAATTAA+AGG + chr3_3:84443796-84443815 None:intergenic 25.0%
! ATTCCTCTCCAAAAAAATTA+GGG + chr3_3:84443827-84443846 None:intergenic 25.0%
! TTTGTGAACAATCGATTCTA+AGG + chr3_3:84440527-84440546 None:intergenic 30.0%
!! TTGGATATCTTTTTGGAGAT+AGG + chr3_3:84440785-84440804 None:intergenic 30.0%
!!! CTTGGTTTTGGATATCTTTT+TGG + chr3_3:84440792-84440811 None:intergenic 30.0%
CAAAAAGATATCCAAAACCA+AGG - chr3_3:84440790-84440809 Msa0479430:CDS 30.0%
! AGAATTTCGATTTTGTACCT+TGG + chr3_3:84440810-84440829 None:intergenic 30.0%
AGAAGTGAAGAAAAAGAAGA+AGG - chr3_3:84440922-84440941 Msa0479430:CDS 30.0%
AAAGAAGAAGGTAAAGAAAG+AGG - chr3_3:84440934-84440953 Msa0479430:CDS 30.0%
GAAGGTTAAGAAAGTAAAGA+AGG - chr3_3:84440979-84440998 Msa0479430:CDS 30.0%
AAGAAGGTTTATGATTTACC+TGG - chr3_3:84440995-84441014 Msa0479430:CDS 30.0%
!!! TTTTTTAGAGAGATCCTTCT+AGG - chr3_3:84441124-84441143 Msa0479430:intron 30.0%
!! TTTTTAGAGAGATCCTTCTA+GGG - chr3_3:84441125-84441144 Msa0479430:intron 30.0%
AACAGAAACATAAGCAGAAT+AGG + chr3_3:84441221-84441240 None:intergenic 30.0%
! CAATTCATCATATTTAGGGT+CGG - chr3_3:84441257-84441276 Msa0479430:intron 30.0%
TAAATTACATGGAGAGCTTA+TGG + chr3_3:84441357-84441376 None:intergenic 30.0%
CACTTCATAATTCACATTCA+TGG + chr3_3:84441593-84441612 None:intergenic 30.0%
TACTTGTGAATTCGATTAAG+AGG - chr3_3:84441669-84441688 Msa0479430:intron 30.0%
AAAGTGCATTTGAATGGAAA+GGG + chr3_3:84441901-84441920 None:intergenic 30.0%
TTGTACAAAGTGCATTTGAA+TGG + chr3_3:84441907-84441926 None:intergenic 30.0%
!! AAAAGTACTCTTTGAGTCTA+AGG + chr3_3:84442005-84442024 None:intergenic 30.0%
GCGCAATTTAATATATTTCC+AGG + chr3_3:84442057-84442076 None:intergenic 30.0%
! ATGCTATTATTTTCCTCACA+GGG - chr3_3:84442098-84442117 Msa0479430:intron 30.0%
TAAAACCAGAAGCCAATTTA+AGG - chr3_3:84442171-84442190 Msa0479430:intron 30.0%
AATCACTTCTGTCCTTAAAT+TGG + chr3_3:84442186-84442205 None:intergenic 30.0%
AGAATTTACACAAACACAAG+GGG + chr3_3:84442213-84442232 None:intergenic 30.0%
GAGAATTTACACAAACACAA+GGG + chr3_3:84442214-84442233 None:intergenic 30.0%
AGAGAATTTACACAAACACA+AGG + chr3_3:84442215-84442234 None:intergenic 30.0%
GTGTAAATTCTCTCAAATGA+TGG - chr3_3:84442222-84442241 Msa0479430:intron 30.0%
CAAAATAACCGTTAATCCAA+AGG + chr3_3:84442544-84442563 None:intergenic 30.0%
!! TCTTAGGTCAGAGTTATTTT+AGG - chr3_3:84442575-84442594 Msa0479430:intron 30.0%
TAACAAATCAAACACCTGTT+AGG + chr3_3:84442673-84442692 None:intergenic 30.0%
! AGGTGGAGATTTTTATGTTT+TGG + chr3_3:84442850-84442869 None:intergenic 30.0%
! TTTAAAATGATATGAGGGGA+TGG + chr3_3:84442941-84442960 None:intergenic 30.0%
! CCCCTCATATCATTTTAAAT+TGG - chr3_3:84442942-84442961 Msa0479430:intron 30.0%
ATGCTCGTATTATAGTCTAA+TGG - chr3_3:84443043-84443062 Msa0479430:intron 30.0%
!! CAGGTTGTCTTGTTTAAATA+AGG + chr3_3:84443076-84443095 None:intergenic 30.0%
GAAATGTGTATCATCAAAAC+TGG - chr3_3:84443187-84443206 Msa0479430:CDS 30.0%
!!! ATAGAGCGTAGAAGATTTTT+TGG - chr3_3:84443262-84443281 Msa0479430:intron 30.0%
! CTTTTTAACGGAAGAATTTG+GGG + chr3_3:84443473-84443492 None:intergenic 30.0%
!!! GTTTGTTGGCTTCTTTTTAA+CGG + chr3_3:84443485-84443504 None:intergenic 30.0%
! ATTTTCAGATTTGTGCTTCT+TGG + chr3_3:84443545-84443564 None:intergenic 30.0%
!! GATGATTCTGATTTTGACAT+TGG - chr3_3:84443580-84443599 Msa0479430:CDS 30.0%
!!! ACAATCCACCCTAATTTTTT+TGG - chr3_3:84443816-84443835 Msa0479430:exon 30.0%
GATTCCTCTCCAAAAAAATT+AGG + chr3_3:84443828-84443847 None:intergenic 30.0%
ATAAATTGCATTTGGCAGAA+AGG - chr3_3:84443888-84443907 Msa0479430:five_prime_UTR 30.0%
!! ATTCTAAGGTTCAATGTGGA+TGG + chr3_3:84440513-84440532 None:intergenic 35.0%
!! ATCGATTCTAAGGTTCAATG+TGG + chr3_3:84440517-84440536 None:intergenic 35.0%
!!! TTGTCGTCTTGTTTTTTCAC+AGG + chr3_3:84440572-84440591 None:intergenic 35.0%
!!! AGTTTTGAACCCTTAGAAAG+GGG + chr3_3:84440641-84440660 None:intergenic 35.0%
!!! GAGTTTTGAACCCTTAGAAA+GGG + chr3_3:84440642-84440661 None:intergenic 35.0%
!!! TGAGTTTTGAACCCTTAGAA+AGG + chr3_3:84440643-84440662 None:intergenic 35.0%
TTCTCGTTCCAAAGTTAAGA+GGG - chr3_3:84440712-84440731 Msa0479430:three_prime_UTR 35.0%
! TCGATTTTGTACCTTGGTTT+TGG + chr3_3:84440804-84440823 None:intergenic 35.0%
!! TTAGAGTATTGTGCTGTGTT+AGG - chr3_3:84440889-84440908 Msa0479430:CDS 35.0%
ACAAATTCCAACTAGCGAAA+TGG - chr3_3:84441170-84441189 Msa0479430:intron 35.0%
!!! TTGTGACTTTTGAGACTGTT+TGG - chr3_3:84441311-84441330 Msa0479430:intron 35.0%
AATTGTCTTCCATTCACAGT+TGG + chr3_3:84441718-84441737 None:intergenic 35.0%
ACTGATAAAATGAGACCCTA+AGG + chr3_3:84441814-84441833 None:intergenic 35.0%
CAAAGTGCATTTGAATGGAA+AGG + chr3_3:84441902-84441921 None:intergenic 35.0%
GGCTCACATTCAAACATAAA+GGG + chr3_3:84441984-84442003 None:intergenic 35.0%
AGGCTCACATTCAAACATAA+AGG + chr3_3:84441985-84442004 None:intergenic 35.0%
! CATGCTATTATTTTCCTCAC+AGG - chr3_3:84442097-84442116 Msa0479430:intron 35.0%
GTGTATGATTATCTACGAGT+TGG + chr3_3:84442355-84442374 None:intergenic 35.0%
ACTCGTAGATAATCATACAC+CGG - chr3_3:84442355-84442374 Msa0479430:intron 35.0%
AACAAGCGAACAAATGCATA+AGG + chr3_3:84442427-84442446 None:intergenic 35.0%
AAAGAGTGATGTCAGATCTA+GGG + chr3_3:84442491-84442510 None:intergenic 35.0%
CATGGAGAATACACAGAAAA+AGG + chr3_3:84442870-84442889 None:intergenic 35.0%
TAAATTGGTTGTGCTGTACA+TGG - chr3_3:84442957-84442976 Msa0479430:intron 35.0%
ACAATACAATGCCAGTAACT+GGG + chr3_3:84443020-84443039 None:intergenic 35.0%
AACAATACAATGCCAGTAAC+TGG + chr3_3:84443021-84443040 None:intergenic 35.0%
CTACCAGACAAGATAAGAAA+AGG + chr3_3:84443124-84443143 None:intergenic 35.0%
TTCTTATCTTGTCTGGTAGA+AGG - chr3_3:84443125-84443144 Msa0479430:intron 35.0%
GTAGAAGGAGTAAAAGCTAT+CGG - chr3_3:84443140-84443159 Msa0479430:intron 35.0%
!!! ATTTGCAATGTTTTTTCCCC+CGG - chr3_3:84443650-84443669 Msa0479430:CDS 35.0%
! TTGGTGACACAAAACTTGTA+AGG - chr3_3:84443682-84443701 Msa0479430:CDS 35.0%
TGGTGACACAAAACTTGTAA+GGG - chr3_3:84443683-84443702 Msa0479430:CDS 35.0%
! GACATAAGCGATTCTGAAGA+AGG - chr3_3:84440450-84440469 Msa0479430:three_prime_UTR 40.0%
GGTGAAGATGAACAAGGTTT+GGG + chr3_3:84440488-84440507 None:intergenic 40.0%
AGGTGAAGATGAACAAGGTT+TGG + chr3_3:84440489-84440508 None:intergenic 40.0%
ATGGAAGGTGAAGATGAACA+AGG + chr3_3:84440494-84440513 None:intergenic 40.0%
TAAGGTTCAATGTGGATGGA+AGG + chr3_3:84440509-84440528 None:intergenic 40.0%
ACAGGTTTCGAATCTTCAGA+AGG + chr3_3:84440554-84440573 None:intergenic 40.0%
AAAAAAGCCGCAAAACCCAA+CGG - chr3_3:84440611-84440630 Msa0479430:three_prime_UTR 40.0%
TTAGAAAGGGGTTTACCGTT+GGG + chr3_3:84440629-84440648 None:intergenic 40.0%
AACGGTAAACCCCTTTCTAA+GGG - chr3_3:84440629-84440648 Msa0479430:three_prime_UTR 40.0%
CTTCTCGTTCCAAAGTTAAG+AGG - chr3_3:84440711-84440730 Msa0479430:three_prime_UTR 40.0%
CTTGAGTTCCCTCTTAACTT+TGG + chr3_3:84440723-84440742 None:intergenic 40.0%
CAAAGTTAAGAGGGAACTCA+AGG - chr3_3:84440721-84440740 Msa0479430:three_prime_UTR 40.0%
GAAGGTAAAGAAAGAGGAAG+AGG - chr3_3:84440940-84440959 Msa0479430:CDS 40.0%
! GGTTGTTGTTAGAGAAACGA+AGG - chr3_3:84440961-84440980 Msa0479430:CDS 40.0%
ATTGTTATGCAAACCTCTGC+AGG + chr3_3:84441037-84441056 None:intergenic 40.0%
!! ATTTGTGCCATTTCGCTAGT+TGG + chr3_3:84441180-84441199 None:intergenic 40.0%
CAAATCTGGTGAGTTCTCAA+CGG - chr3_3:84441195-84441214 Msa0479430:intron 40.0%
! TGGTGATAGTGTTCTTGCAA+GGG + chr3_3:84441573-84441592 None:intergenic 40.0%
! ATGGTGATAGTGTTCTTGCA+AGG + chr3_3:84441574-84441593 None:intergenic 40.0%
AATGACATGCCAACTGTGAA+TGG - chr3_3:84441706-84441725 Msa0479430:intron 40.0%
TTTGTTCCACGACACTTGTT+TGG - chr3_3:84441759-84441778 Msa0479430:intron 40.0%
TTCAAACCTCCAAATGCCTT+AGG - chr3_3:84441795-84441814 Msa0479430:intron 40.0%
TCAAACCTCCAAATGCCTTA+GGG - chr3_3:84441796-84441815 Msa0479430:intron 40.0%
! AAATGAGACCCTAAGGCATT+TGG + chr3_3:84441807-84441826 None:intergenic 40.0%
AGTGAGCTTAATTCCCTGTA+CGG - chr3_3:84441831-84441850 Msa0479430:intron 40.0%
AACCAATTCTACACCGTACA+GGG + chr3_3:84441847-84441866 None:intergenic 40.0%
AAACCAATTCTACACCGTAC+AGG + chr3_3:84441848-84441867 None:intergenic 40.0%
! GGTTTTGCTGATGTGTACAA+AGG - chr3_3:84441863-84441882 Msa0479430:intron 40.0%
TAATATATTTCCAGGGGCCT+GGG + chr3_3:84442049-84442068 None:intergenic 40.0%
TTAATATATTTCCAGGGGCC+TGG + chr3_3:84442050-84442069 None:intergenic 40.0%
! TCTGTCCTTAAATTGGCTTC+TGG + chr3_3:84442179-84442198 None:intergenic 40.0%
CTCTCAAATGATGGTTGTGA+TGG - chr3_3:84442231-84442250 Msa0479430:intron 40.0%
!!! CCTCGCATAGTTTTGTTTTC+AGG + chr3_3:84442258-84442277 None:intergenic 40.0%
CCTGAAAACAAAACTATGCG+AGG - chr3_3:84442255-84442274 Msa0479430:intron 40.0%
! TTATCTACGAGTTGGAATGC+TGG + chr3_3:84442347-84442366 None:intergenic 40.0%
AAATGCATAAGGCCTGATAG+TGG + chr3_3:84442416-84442435 None:intergenic 40.0%
CAAAGAGTGATGTCAGATCT+AGG + chr3_3:84442492-84442511 None:intergenic 40.0%
GTTAGGTAATTGCAACTGCA+AGG + chr3_3:84442656-84442675 None:intergenic 40.0%
TGCAGTTGCAATTACCTAAC+AGG - chr3_3:84442656-84442675 Msa0479430:intron 40.0%
GGAGAATACACAGAAAAAGG+TGG + chr3_3:84442867-84442886 None:intergenic 40.0%
TATGAGGGGATGGAATAACA+GGG + chr3_3:84442931-84442950 None:intergenic 40.0%
ATATGAGGGGATGGAATAAC+AGG + chr3_3:84442932-84442951 None:intergenic 40.0%
AGGAAAATTCAATCTGCAGC+AGG + chr3_3:84443095-84443114 None:intergenic 40.0%
AAGATAAGAAAAGGCGGGAA+AGG + chr3_3:84443115-84443134 None:intergenic 40.0%
CAGACAAGATAAGAAAAGGC+GGG + chr3_3:84443120-84443139 None:intergenic 40.0%
CCAGACAAGATAAGAAAAGG+CGG + chr3_3:84443121-84443140 None:intergenic 40.0%
ACTTTCTTTGCCACCTCTTT+AGG + chr3_3:84443334-84443353 None:intergenic 40.0%
ACAGCAGTTACAGACTTAAC+AGG + chr3_3:84443403-84443422 None:intergenic 40.0%
TGCTTTGATGTGGAGTTTGT+TGG + chr3_3:84443499-84443518 None:intergenic 40.0%
TCAGATTTGTGCTTCTTGGT+TGG + chr3_3:84443541-84443560 None:intergenic 40.0%
ATCTGAAAATTCGAGCTCTG+AGG - chr3_3:84443555-84443574 Msa0479430:intron 40.0%
GGTGACACAAAACTTGTAAG+GGG - chr3_3:84443684-84443703 Msa0479430:CDS 40.0%
ACGAATTAAAGGTCTACAGC+AGG + chr3_3:84443785-84443804 None:intergenic 40.0%
CCTCTCCAAAAAAATTAGGG+TGG + chr3_3:84443824-84443843 None:intergenic 40.0%
!!! CCACCCTAATTTTTTTGGAG+AGG - chr3_3:84443821-84443840 Msa0479430:exon 40.0%
CTTAGAAAGGGGTTTACCGT+TGG + chr3_3:84440630-84440649 None:intergenic 45.0%
CAACGGTAAACCCCTTTCTA+AGG - chr3_3:84440628-84440647 Msa0479430:three_prime_UTR 45.0%
! TTTGGAACGAGAAGCTGAAG+TGG + chr3_3:84440705-84440724 None:intergenic 45.0%
TTTGTCATCGTCGTCTTCGT+CGG + chr3_3:84440762-84440781 None:intergenic 45.0%
! TGTGCTGTGTTAGGTTGTGA+AGG - chr3_3:84440898-84440917 Msa0479430:CDS 45.0%
GTCTCGTAGAAAACCCTAGA+AGG + chr3_3:84441141-84441160 None:intergenic 45.0%
CTAGCGAAATGGCACAAATC+TGG - chr3_3:84441181-84441200 Msa0479430:intron 45.0%
GTTTCTCAGTCTCTTCTGAG+TGG + chr3_3:84441636-84441655 None:intergenic 45.0%
! TACAGTCCAAACAAGTGTCG+TGG + chr3_3:84441768-84441787 None:intergenic 45.0%
TTCCCTGTACGGTGTAGAAT+TGG - chr3_3:84441842-84441861 Msa0479430:intron 45.0%
TAGAACCGCTAGGAACTACA+GGG + chr3_3:84442381-84442400 None:intergenic 45.0%
TTAGAACCGCTAGGAACTAC+AGG + chr3_3:84442382-84442401 None:intergenic 45.0%
! GCATGCAATTTAGAACCGCT+AGG + chr3_3:84442391-84442410 None:intergenic 45.0%
AATTGCATGCCACCACTATC+AGG - chr3_3:84442401-84442420 Msa0479430:intron 45.0%
GGGAAGAGAGACAAGAAAAG+AGG + chr3_3:84442910-84442929 None:intergenic 45.0%
ATGAGGGGATGGAATAACAG+GGG + chr3_3:84442930-84442949 None:intergenic 45.0%
AGTTGTCGTAACCCAGTTAC+TGG - chr3_3:84443006-84443025 Msa0479430:intron 45.0%
! CCGCCTTTTCTTATCTTGTC+TGG - chr3_3:84443118-84443137 Msa0479430:intron 45.0%
! TGATTGCAACTGCAGGTTGA+TGG - chr3_3:84443294-84443313 Msa0479430:intron 45.0%
!! AACTGCAGGTTGATGGAATC+AGG - chr3_3:84443301-84443320 Msa0479430:intron 45.0%
! ATCAGGCTTGCTTCCTAAAG+AGG - chr3_3:84443318-84443337 Msa0479430:intron 45.0%
AAAGAAAGCTCTGCAGCAGA+AGG - chr3_3:84443369-84443388 Msa0479430:CDS 45.0%
GGAGTTTGTCTGCTTTGATG+TGG + chr3_3:84443509-84443528 None:intergenic 45.0%
TGTCACCAACAACAAATGCC+GGG + chr3_3:84443671-84443690 None:intergenic 45.0%
GTGTCACCAACAACAAATGC+CGG + chr3_3:84443672-84443691 None:intergenic 45.0%
! AAACTTGTAAGGGGCACATG+AGG - chr3_3:84443693-84443712 Msa0479430:CDS 45.0%
!! AATAAAAAAAAAAAAAAACT+AGG + chr3_3:84440837-84440856 None:intergenic 5.0%
!!! CTCTCTTGTTTTCGGGACTC+CGG + chr3_3:84440421-84440440 None:intergenic 50.0%
! GGGTTTACCGTTGGGTTTTG+CGG + chr3_3:84440621-84440640 None:intergenic 50.0%
GTTATGCAAACCTCTGCAGG+TGG + chr3_3:84441034-84441053 None:intergenic 50.0%
! TGAGACCCTAAGGCATTTGG+AGG + chr3_3:84441804-84441823 None:intergenic 50.0%
TATAACACCAAGCCTAGCCC+AGG - chr3_3:84442029-84442048 Msa0479430:intron 50.0%
!! TGCATAAGGCCTGATAGTGG+TGG + chr3_3:84442413-84442432 None:intergenic 50.0%
TCTCCATGACCTTTACCCCA+AGG - chr3_3:84442882-84442901 Msa0479430:intron 50.0%
!! ACAAGAAAAGAGGCGCCTTG+GGG + chr3_3:84442900-84442919 None:intergenic 50.0%
!! GACAAGAAAAGAGGCGCCTT+GGG + chr3_3:84442901-84442920 None:intergenic 50.0%
!! AGACAAGAAAAGAGGCGCCT+TGG + chr3_3:84442902-84442921 None:intergenic 50.0%
! GCGTTACTGATTGCAACTGC+AGG - chr3_3:84443287-84443306 Msa0479430:intron 50.0%
! AGGCTTGCTTCCTAAAGAGG+TGG - chr3_3:84443321-84443340 Msa0479430:intron 50.0%
! CGGAAGAATTTGGGGTAGCT+GGG + chr3_3:84443465-84443484 None:intergenic 50.0%
! ACGGAAGAATTTGGGGTAGC+TGG + chr3_3:84443466-84443485 None:intergenic 50.0%
!! CTTCTTGGTTGGCTTCGATG+TGG + chr3_3:84443530-84443549 None:intergenic 50.0%
!! TTTCCCCCGGCATTTGTTGT+TGG - chr3_3:84443663-84443682 Msa0479430:CDS 50.0%
TCACCAACAACAAATGCCGG+GGG + chr3_3:84443669-84443688 None:intergenic 50.0%
GTCACCAACAACAAATGCCG+GGG + chr3_3:84443670-84443689 None:intergenic 50.0%
GCTGAAGTGGCACGAGGAAT+GGG + chr3_3:84440692-84440711 None:intergenic 55.0%
AGCTGAAGTGGCACGAGGAA+TGG + chr3_3:84440693-84440712 None:intergenic 55.0%
GGTGGATCACGTTTCTGTCC+AGG + chr3_3:84441016-84441035 None:intergenic 55.0%
GAAACGTGATCCACCTGCAG+AGG - chr3_3:84441021-84441040 Msa0479430:CDS 55.0%
!! AAAGAGGCGCCTTGGGGTAA+AGG + chr3_3:84442894-84442913 None:intergenic 55.0%
! GTGGCACGAGGAATGGGTTC+AGG + chr3_3:84440686-84440705 None:intergenic 60.0%
CGAGAAGCTGAAGTGGCACG+AGG + chr3_3:84440698-84440717 None:intergenic 60.0%
TATTTCCAGGGGCCTGGGCT+AGG + chr3_3:84442044-84442063 None:intergenic 60.0%
ACCGGCCCTGTAGTTCCTAG+CGG - chr3_3:84442373-84442392 Msa0479430:intron 60.0%
ACCGCTAGGAACTACAGGGC+CGG + chr3_3:84442377-84442396 None:intergenic 60.0%
GCGCCTTGGGGTAAAGGTCA+TGG + chr3_3:84442888-84442907 None:intergenic 60.0%
! CCAGGGGCCTGGGCTAGGCT+TGG + chr3_3:84442039-84442058 None:intergenic 75.0%
CCAAGCCTAGCCCAGGCCCC+TGG - chr3_3:84442036-84442055 Msa0479430:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84440418 84443962 84440418 ID=Msa0479430;Name=Msa0479430
chr3_3 mRNA 84440418 84443962 84440418 ID=Msa0479430-mRNA-1;Parent=Msa0479430;Name=Msa0479430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=130|1|1|1|1|1|4|326|264
chr3_3 exon 84440418 84441071 84440418 ID=Msa0479430-mRNA-1:exon:23961;Parent=Msa0479430-mRNA-1
chr3_3 exon 84443178 84443248 84443178 ID=Msa0479430-mRNA-1:exon:23960;Parent=Msa0479430-mRNA-1
chr3_3 exon 84443338 84443469 84443338 ID=Msa0479430-mRNA-1:exon:23959;Parent=Msa0479430-mRNA-1
chr3_3 exon 84443569 84443962 84443569 ID=Msa0479430-mRNA-1:exon:23958;Parent=Msa0479430-mRNA-1
chr3_3 five_prime_UTR 84443833 84443962 84443833 ID=Msa0479430-mRNA-1:five_prime_utr;Parent=Msa0479430-mRNA-1
chr3_3 CDS 84443569 84443832 84443569 ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1
chr3_3 CDS 84443338 84443469 84443338 ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1
chr3_3 CDS 84443178 84443248 84443178 ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1
chr3_3 CDS 84440744 84441071 84440744 ID=Msa0479430-mRNA-1:cds;Parent=Msa0479430-mRNA-1
chr3_3 three_prime_UTR 84440418 84440743 84440418 ID=Msa0479430-mRNA-1:three_prime_utr;Parent=Msa0479430-mRNA-1
Gene Sequence

>Msa0479430

ATGCCTTCTGAAGATTCGAAACCTGTGAAAAAACAAGACGACAACGACAAGATTTCTACTTTGAAAAAAGCCGCAAAACCCAACGGTAAACCCCTTTCTAAGGGTTCAAAACTCAAGAAATTATTCAAAGAAGAACCTGAACCCATTCCTCGTGCCACTTCAGCTTCTCGTTCCAAAGTTAAGAGGGAACTCAAGGACGATGATGATGACTCCGACGAAGACGACGATGACAAACCTATCTCCAAAAAGATATCCAAAACCAAGGTTGTGAAGGAAGAAGTGAAGAAAAAGAAGAAGGTAAAGAAAGAGGAAGAGGTTGTTGTTAGAGAAACGAAGGTTAAGAAAGTAAAGAAGGTTTATGATTTACCTGGACAGAAACGTGATCCACCTGCAGAGAGAGATCCTTCTAGGGTTTTCTACGAGACTTTACATGAACAAATTCCAACTAGCGAAATGGCACAAATCTGGTTGATGGAATCAGGCTTGCTTCCTAAAGAGGTGGCAAAGAAAGTATTTGAGAAGAAGCAAAAGAAAGCTCTGCAGCAGAAGGTCTCTTCTCCTGTTAAGTCTGTAACTGCTGTGAAGAAAAGCACCAAATCTGTTACAATTAAGAAAGAATGCCCAGCTACCCCAAATTCTTCCGTTAAAAAGAAGCCAACAAACTCCACATCAAAGCAGACAAACTCCACATCGAAGCCAACCAAGAAGCACAAATCTGAAAATTCGAGCTCTGAGGATGATGATTCTGATTTTGACATTGGTTCAGCAACAAAAAAGAAGAGAAAAGTGGCTTAA

Protein sequence

>Msa0479430

MPSEDSKPVKKQDDNDKISTLKKAAKPNGKPLSKGSKLKKLFKEEPEPIPRATSASRSKVKRELKDDDDDSDEDDDDKPISKKISKTKVVKEEVKKKKKVKKEEEVVVRETKVKKVKKVYDLPGQKRDPPAERDPSRVFYETLHEQIPTSEMAQIWLMESGLLPKEVAKKVFEKKQKKALQQKVSSPVKSVTAVKKSTKSVTIKKECPATPNSSVKKKPTNSTSKQTNSTSKPTKKHKSENSSSEDDDSDFDIGSATKKKRKVA*