AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698660 MtrunA17_Chr4g0065831 100.000 130 0 0 1 130 1 130 8.31e-94 266
Msa0698660 MtrunA17_Chr4g0051921 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0698660 MtrunA17_Chr1g0205971 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0698660 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 1.43e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698660 AT5G59850.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698660 AT1G07770.2 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698660 AT1G07770.3 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698660 AT1G07770.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0698660 AT3G46040.1 97.692 130 3 0 1 130 1 130 4.20e-92 262
Msa0698660 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.49e-87 249
Msa0698660 AT4G29430.1 54.400 125 57 0 6 130 5 129 3.10e-47 149
Msa0698660 AT2G19720.1 53.600 125 58 0 6 130 5 129 3.24e-45 144

Find 45 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAAGCTAAATTGAATTT+TGG 0.179131 4_4:+69024310 Msa0698660:three_prime_UTR
CACTGTCTCAACGCAGAATT+AGG 0.187245 4_4:-69022285 None:intergenic
GAAATTTGTAACAGCAAATA+TGG 0.239649 4_4:+69022422 Msa0698660:intron
TTTACATGGATATTGTAATA+TGG 0.280818 4_4:+69024276 Msa0698660:three_prime_UTR
GGATTAACGAAAGAATAATT+TGG 0.282896 4_4:-69024396 None:intergenic
TGGGTAAACTATTGTGCTCT+TGG 0.338767 4_4:+69024330 Msa0698660:three_prime_UTR
CTTGTGGTTATAGGATATAT+TGG 0.379495 4_4:+69022653 Msa0698660:intron
GGGTTACGGAAGCCTCAAAA+TGG 0.386846 4_4:-69022264 None:intergenic
GACTACCTCTGCTGGTATCA+TGG 0.414748 4_4:+69024124 Msa0698660:CDS
AATCCATTTGTCATGATGAA+TGG 0.432930 4_4:+69024414 Msa0698660:three_prime_UTR
TATTGTAATATGGATTACTT+AGG 0.434075 4_4:+69024286 Msa0698660:three_prime_UTR
ATTAGTCCTCGTTTCGATGT+TGG 0.460967 4_4:+69022755 Msa0698660:CDS
GCACAAGCACACAATTTCTC+TGG 0.472256 4_4:+69022319 Msa0698660:five_prime_UTR
AGGCCATTCATCATGACAAA+TGG 0.479914 4_4:-69024417 None:intergenic
AAAATTGTTGTGGAATTGAA+TGG 0.479932 4_4:+69022710 Msa0698660:CDS
TACGTTGATGATCACAGGTC+TGG 0.486815 4_4:+69022686 Msa0698660:CDS
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 4_4:+69024170 Msa0698660:CDS
ACTGTCTCAACGCAGAATTA+GGG 0.523684 4_4:-69022284 None:intergenic
AGATTGAAGGATGGACTGCT+AGG 0.524175 4_4:+69022786 Msa0698660:CDS
AGGATGGCCTAATCATAACT+TGG 0.529437 4_4:-69022509 None:intergenic
GGAAGCGCCAAGTTATGATT+AGG 0.530843 4_4:+69022502 Msa0698660:CDS
ATTGTCTTGACTACCTCTGC+TGG 0.534592 4_4:+69024116 Msa0698660:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 4_4:+69024169 Msa0698660:CDS
TCGAATACGTTGATGATCAC+AGG 0.543527 4_4:+69022681 Msa0698660:CDS
TCAACGCAGAATTAGGGTTA+CGG 0.543710 4_4:-69022278 None:intergenic
TCATACTTGGTATGCTCTAG+AGG 0.550935 4_4:-69024440 None:intergenic
GATGTTGCAGAACTCATACT+TGG 0.557426 4_4:-69024453 None:intergenic
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 4_4:+69024158 Msa0698660:CDS
TTGTAACAGCAAATATGGTG+AGG 0.575157 4_4:+69022427 Msa0698660:intron
TAGGCTTCTTCCCTCAAGAC+AGG 0.576488 4_4:+69022805 Msa0698660:CDS
TGTAACAGCAAATATGGTGA+GGG 0.583163 4_4:+69022428 Msa0698660:intron
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 4_4:+69024155 Msa0698660:CDS
TCATGGATCATGAAGAGGCT+AGG 0.585008 4_4:+69024141 Msa0698660:CDS
ATGTACAATGCTGAGAAACG+TGG 0.619087 4_4:+69022480 Msa0698660:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.620427 4_4:+69022773 Msa0698660:CDS
CTTATCGTCATGCAAAAGCA+TGG 0.625917 4_4:+69022552 Msa0698660:CDS
CAGGTCTGGCAAAATTGTTG+TGG 0.629911 4_4:+69022700 Msa0698660:CDS
AATGGAAGATTGAATAAGTG+TGG 0.630140 4_4:+69022728 Msa0698660:CDS
AGAGAAATTGTGTGCTTGTG+CGG 0.632079 4_4:-69022317 None:intergenic
TGGTATCATGGATCATGAAG+AGG 0.639197 4_4:+69024136 Msa0698660:CDS
ATGATCCATGATACCAGCAG+AGG 0.644078 4_4:-69024129 None:intergenic
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 4_4:+69022777 Msa0698660:CDS
TGTACAATGCTGAGAAACGT+GGG 0.665211 4_4:+69022481 Msa0698660:CDS
TACTTGGTATGCTCTAGAGG+AGG 0.667925 4_4:-69024437 None:intergenic
TTGACACCAACATCGAAACG+AGG 0.688564 4_4:-69022761 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_4:69023679-69023698 Msa0698660:intron 10.0%
!!! CTAATTATTCTTTTATTTAT+TGG + chr4_4:69023679-69023698 Msa0698660:intron 10.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_4:69023040-69023059 Msa0698660:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_4:69023193-69023212 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_4:69023194-69023213 None:intergenic 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_4:69023603-69023622 Msa0698660:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_4:69023604-69023623 Msa0698660:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_4:69023900-69023919 Msa0698660:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_4:69023901-69023920 Msa0698660:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_4:69024262-69024281 Msa0698660:three_prime_UTR 15.0%
!! AAATTATAAAAACAGCTTAT+AGG + chr4_4:69023040-69023059 Msa0698660:intron 15.0%
!! ATAAAACACAAACTTAATTA+GGG - chr4_4:69023193-69023212 None:intergenic 15.0%
!! TATAAAACACAAACTTAATT+AGG - chr4_4:69023194-69023213 None:intergenic 15.0%
!!! ATTTTCTTATTATGCTTTTA+TGG + chr4_4:69023603-69023622 Msa0698660:intron 15.0%
!!! TTTTCTTATTATGCTTTTAT+GGG + chr4_4:69023604-69023623 Msa0698660:intron 15.0%
!! AAAGAAAAACTAATAGTTAA+AGG + chr4_4:69023900-69023919 Msa0698660:intron 15.0%
!! AAGAAAAACTAATAGTTAAA+GGG + chr4_4:69023901-69023920 Msa0698660:intron 15.0%
!!! ATTCAGTTTTTTTTTTTACA+TGG + chr4_4:69024262-69024281 Msa0698660:three_prime_UTR 15.0%
!! CAAAAGCAAATAAATTAGAA+AGG - chr4_4:69023328-69023347 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG + chr4_4:69023326-69023345 Msa0698660:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_4:69023541-69023560 Msa0698660:intron 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_4:69023570-69023589 Msa0698660:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_4:69023605-69023624 Msa0698660:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_4:69023677-69023696 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_4:69023765-69023784 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_4:69023766-69023785 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_4:69023813-69023832 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_4:69023902-69023921 Msa0698660:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_4:69023938-69023957 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_4:69024276-69024295 Msa0698660:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_4:69024286-69024305 Msa0698660:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_4:69024310-69024329 Msa0698660:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_4:69024311-69024330 Msa0698660:three_prime_UTR 20.0%
!! CAAAAGCAAATAAATTAGAA+AGG - chr4_4:69023328-69023347 None:intergenic 20.0%
!!! CTTTCTAATTTATTTGCTTT+TGG + chr4_4:69023326-69023345 Msa0698660:intron 20.0%
!!! TCATGAATCATTTTTAATGA+TGG + chr4_4:69023541-69023560 Msa0698660:intron 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_4:69023570-69023589 Msa0698660:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_4:69023605-69023624 Msa0698660:intron 20.0%
!! AAATAAAAGAATAATTAGCG+AGG - chr4_4:69023677-69023696 None:intergenic 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_4:69023765-69023784 None:intergenic 20.0%
!! TAAAATATTAAAAGATGGGA+TGG - chr4_4:69023766-69023785 None:intergenic 20.0%
!! AATTGAATAATTGTTGCAAA+AGG - chr4_4:69023813-69023832 None:intergenic 20.0%
!! AGAAAAACTAATAGTTAAAG+GGG + chr4_4:69023902-69023921 Msa0698660:intron 20.0%
!! ACAAAGTATATAAAGATTGT+CGG - chr4_4:69023938-69023957 None:intergenic 20.0%
!! TTTACATGGATATTGTAATA+TGG + chr4_4:69024276-69024295 Msa0698660:three_prime_UTR 20.0%
!!! TATTGTAATATGGATTACTT+AGG + chr4_4:69024286-69024305 Msa0698660:three_prime_UTR 20.0%
!!! TTGTAAGCTAAATTGAATTT+TGG + chr4_4:69024310-69024329 Msa0698660:three_prime_UTR 20.0%
!!! TGTAAGCTAAATTGAATTTT+GGG + chr4_4:69024311-69024330 Msa0698660:three_prime_UTR 20.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_4:69022252-69022271 Msa0698660:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_4:69022422-69022441 Msa0698660:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_4:69022532-69022551 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_4:69022637-69022656 Msa0698660:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_4:69022710-69022729 Msa0698660:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_4:69022844-69022863 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_4:69022936-69022955 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_4:69022935-69022954 Msa0698660:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_4:69022936-69022955 Msa0698660:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_4:69022969-69022988 Msa0698660:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_4:69023445-69023464 Msa0698660:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_4:69023655-69023674 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_4:69023948-69023967 Msa0698660:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_4:69024053-69024072 Msa0698660:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_4:69024399-69024418 None:intergenic 25.0%
!! ATCGAATAAAAACCATTTTG+AGG + chr4_4:69022252-69022271 Msa0698660:five_prime_UTR 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_4:69022422-69022441 Msa0698660:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_4:69022532-69022551 None:intergenic 25.0%
! TGATATATTGTATACTCTTG+TGG + chr4_4:69022637-69022656 Msa0698660:intron 25.0%
! AAAATTGTTGTGGAATTGAA+TGG + chr4_4:69022710-69022729 Msa0698660:CDS 25.0%
! TCAAACTAGTATCATGTTTA+TGG - chr4_4:69022844-69022863 None:intergenic 25.0%
! AGAAAACTAACTTATGTCAA+TGG - chr4_4:69022936-69022955 None:intergenic 25.0%
!!! ATTGACATAAGTTAGTTTTC+TGG + chr4_4:69022935-69022954 Msa0698660:intron 25.0%
!!! TTGACATAAGTTAGTTTTCT+GGG + chr4_4:69022936-69022955 Msa0698660:intron 25.0%
!! GAACTTATGAAATTAGCTTA+TGG + chr4_4:69022969-69022988 Msa0698660:intron 25.0%
! TTGACTTATGCTTCATATAT+TGG + chr4_4:69023445-69023464 Msa0698660:intron 25.0%
! GTATAGTAAATAGATAGAGT+GGG - chr4_4:69023655-69023674 None:intergenic 25.0%
! TATACTTTGTAGTAAATCGA+TGG + chr4_4:69023948-69023967 Msa0698660:intron 25.0%
!! GTATCATATGATTTTTCTTG+TGG + chr4_4:69024053-69024072 Msa0698660:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_4:69024399-69024418 None:intergenic 25.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_4:69022528-69022547 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_4:69022593-69022612 Msa0698660:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_4:69022594-69022613 Msa0698660:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_4:69022644-69022663 Msa0698660:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_4:69022653-69022672 Msa0698660:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_4:69022728-69022747 Msa0698660:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_4:69022992-69023011 Msa0698660:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_4:69023002-69023021 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_4:69023003-69023022 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_4:69023184-69023203 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_4:69023210-69023229 Msa0698660:intron 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG + chr4_4:69023333-69023352 Msa0698660:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_4:69023375-69023394 Msa0698660:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_4:69023376-69023395 Msa0698660:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_4:69023457-69023476 Msa0698660:intron 30.0%
TTCAAACCGTTATTAATGGT+TGG + chr4_4:69023574-69023593 Msa0698660:intron 30.0%
TCAAACCGTTATTAATGGTT+GGG + chr4_4:69023575-69023594 Msa0698660:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_4:69023609-69023628 Msa0698660:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_4:69023656-69023675 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_4:69024031-69024050 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_4:69024080-69024099 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_4:69024184-69024203 Msa0698660:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_4:69024185-69024204 Msa0698660:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_4:69024357-69024376 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_4:69024358-69024377 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_4:69024414-69024433 Msa0698660:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_4:69022528-69022547 None:intergenic 30.0%
!! ATGTAGTTGACTCTATTTTG+TGG + chr4_4:69022593-69022612 Msa0698660:intron 30.0%
!! TGTAGTTGACTCTATTTTGT+GGG + chr4_4:69022594-69022613 Msa0698660:intron 30.0%
TTGTATACTCTTGTGGTTAT+AGG + chr4_4:69022644-69022663 Msa0698660:intron 30.0%
CTTGTGGTTATAGGATATAT+TGG + chr4_4:69022653-69022672 Msa0698660:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_4:69022728-69022747 Msa0698660:CDS 30.0%
! CAATATTCCCAAGCTTTTAT+CGG + chr4_4:69022992-69023011 Msa0698660:intron 30.0%
AAATAAGCCGATAAAAGCTT+GGG - chr4_4:69023002-69023021 None:intergenic 30.0%
AAAATAAGCCGATAAAAGCT+TGG - chr4_4:69023003-69023022 None:intergenic 30.0%
AAACTTAATTAGGGTCTGTT+TGG - chr4_4:69023184-69023203 None:intergenic 30.0%
TATAGTTCCTAACTTTCTTG+TGG + chr4_4:69023210-69023229 Msa0698660:intron 30.0%
!!! ATTTATTTGCTTTTGGTTCC+TGG + chr4_4:69023333-69023352 Msa0698660:intron 30.0%
!!! TCTAGTAGGCTTTTAAAACT+TGG + chr4_4:69023375-69023394 Msa0698660:intron 30.0%
!!! CTAGTAGGCTTTTAAAACTT+GGG + chr4_4:69023376-69023395 Msa0698660:intron 30.0%
TCATATATTGGAAATCACTG+TGG + chr4_4:69023457-69023476 Msa0698660:intron 30.0%
TTCAAACCGTTATTAATGGT+TGG + chr4_4:69023574-69023593 Msa0698660:intron 30.0%
TCAAACCGTTATTAATGGTT+GGG + chr4_4:69023575-69023594 Msa0698660:intron 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_4:69023609-69023628 Msa0698660:intron 30.0%
GGTATAGTAAATAGATAGAG+TGG - chr4_4:69023656-69023675 None:intergenic 30.0%
ACAAGCAACATAACATTCAA+CGG - chr4_4:69024031-69024050 None:intergenic 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_4:69024080-69024099 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_4:69024184-69024203 Msa0698660:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_4:69024185-69024204 Msa0698660:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_4:69024357-69024376 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_4:69024358-69024377 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_4:69024414-69024433 Msa0698660:three_prime_UTR 30.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_4:69022330-69022349 Msa0698660:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_4:69022344-69022363 Msa0698660:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_4:69022349-69022368 Msa0698660:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_4:69022427-69022446 Msa0698660:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_4:69022428-69022447 Msa0698660:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_4:69023180-69023199 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_4:69023220-69023239 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_4:69023295-69023314 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_4:69023363-69023382 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_4:69023364-69023383 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_4:69023380-69023399 Msa0698660:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_4:69023461-69023480 Msa0698660:intron 35.0%
ATACGCCCAACCATTAATAA+CGG - chr4_4:69023583-69023602 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_4:69023608-69023627 Msa0698660:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_4:69023652-69023671 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_4:69023857-69023876 Msa0698660:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_4:69023858-69023877 Msa0698660:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_4:69023859-69023878 Msa0698660:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_4:69024001-69024020 Msa0698660:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_4:69024081-69024100 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_4:69024090-69024109 Msa0698660:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_4:69024170-69024189 Msa0698660:CDS 35.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_4:69022330-69022349 Msa0698660:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_4:69022344-69022363 Msa0698660:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_4:69022349-69022368 Msa0698660:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_4:69022427-69022446 Msa0698660:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_4:69022428-69022447 Msa0698660:intron 35.0%
TTAATTAGGGTCTGTTTGGA+TGG - chr4_4:69023180-69023199 None:intergenic 35.0%
AGAATGACCACAAGAAAGTT+AGG - chr4_4:69023220-69023239 None:intergenic 35.0%
TGTTTGATCTCGACATAACA+AGG - chr4_4:69023295-69023314 None:intergenic 35.0%
CTACTAGACCTAACATAAAG+GGG - chr4_4:69023363-69023382 None:intergenic 35.0%
CCTACTAGACCTAACATAAA+GGG - chr4_4:69023364-69023383 None:intergenic 35.0%
!!! TAGGCTTTTAAAACTTGGGT+TGG + chr4_4:69023380-69023399 Msa0698660:intron 35.0%
ATATTGGAAATCACTGTGGT+AGG + chr4_4:69023461-69023480 Msa0698660:intron 35.0%
ATACGCCCAACCATTAATAA+CGG - chr4_4:69023583-69023602 None:intergenic 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_4:69023608-69023627 Msa0698660:intron 35.0%
TAGTAAATAGATAGAGTGGG+AGG - chr4_4:69023652-69023671 None:intergenic 35.0%
AGACAGAAACCTGTTCTATA+TGG + chr4_4:69023857-69023876 Msa0698660:intron 35.0%
GACAGAAACCTGTTCTATAT+GGG + chr4_4:69023858-69023877 Msa0698660:intron 35.0%
ACAGAAACCTGTTCTATATG+GGG + chr4_4:69023859-69023878 Msa0698660:intron 35.0%
CTGAAGTTGCTATCATCATA+TGG + chr4_4:69024001-69024020 Msa0698660:intron 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_4:69024081-69024100 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_4:69024090-69024109 Msa0698660:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_4:69024170-69024189 Msa0698660:CDS 35.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_4:69022281-69022300 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_4:69022287-69022306 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_4:69022320-69022339 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_4:69022480-69022499 Msa0698660:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_4:69022481-69022500 Msa0698660:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_4:69022512-69022531 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_4:69022554-69022573 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_4:69022552-69022571 Msa0698660:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_4:69022559-69022578 Msa0698660:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_4:69022681-69022700 Msa0698660:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_4:69022755-69022774 Msa0698660:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_4:69022773-69022792 Msa0698660:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_4:69022777-69022796 Msa0698660:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_4:69022818-69022837 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_4:69022819-69022838 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_4:69023240-69023259 Msa0698660:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_4:69023354-69023373 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_4:69023352-69023371 Msa0698660:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_4:69023361-69023380 Msa0698660:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_4:69023365-69023384 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_4:69023391-69023410 Msa0698660:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_4:69023392-69023411 Msa0698660:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_4:69023433-69023452 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_4:69023493-69023512 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_4:69023491-69023510 Msa0698660:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_4:69023492-69023511 Msa0698660:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_4:69023626-69023645 Msa0698660:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_4:69023869-69023888 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_4:69024067-69024086 Msa0698660:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_4:69024089-69024108 Msa0698660:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_4:69024136-69024155 Msa0698660:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_4:69024169-69024188 Msa0698660:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_4:69024330-69024349 Msa0698660:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_4:69024420-69024439 None:intergenic 40.0%
TCATACTTGGTATGCTCTAG+AGG - chr4_4:69024443-69024462 None:intergenic 40.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_4:69022281-69022300 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_4:69022287-69022306 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_4:69022320-69022339 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_4:69022480-69022499 Msa0698660:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_4:69022481-69022500 Msa0698660:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_4:69022512-69022531 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_4:69022554-69022573 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_4:69022552-69022571 Msa0698660:CDS 40.0%
! TCATGCAAAAGCATGGTATG+TGG + chr4_4:69022559-69022578 Msa0698660:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_4:69022681-69022700 Msa0698660:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_4:69022755-69022774 Msa0698660:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_4:69022773-69022792 Msa0698660:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_4:69022777-69022796 Msa0698660:CDS 40.0%
!! TTTTAGCTGACCTGTCTTGA+GGG - chr4_4:69022818-69022837 None:intergenic 40.0%
!!! TTTTTAGCTGACCTGTCTTG+AGG - chr4_4:69022819-69022838 None:intergenic 40.0%
TTTGTGTACCACATTGACGT+TGG + chr4_4:69023240-69023259 Msa0698660:intron 40.0%
CTAACATAAAGGGGAATTCC+AGG - chr4_4:69023354-69023373 None:intergenic 40.0%
CTGGAATTCCCCTTTATGTT+AGG + chr4_4:69023352-69023371 Msa0698660:intron 40.0%
CCCTTTATGTTAGGTCTAGT+AGG + chr4_4:69023361-69023380 Msa0698660:intron 40.0%
GCCTACTAGACCTAACATAA+AGG - chr4_4:69023365-69023384 None:intergenic 40.0%
!! AACTTGGGTTGGAATTGTAG+AGG + chr4_4:69023391-69023410 Msa0698660:intron 40.0%
!! ACTTGGGTTGGAATTGTAGA+GGG + chr4_4:69023392-69023411 Msa0698660:intron 40.0%
TAAGTCAAGACAAACACTGC+CGG - chr4_4:69023433-69023452 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_4:69023493-69023512 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_4:69023491-69023510 Msa0698660:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_4:69023492-69023511 Msa0698660:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_4:69023626-69023645 Msa0698660:intron 40.0%
CTGTATTCCCCATATAGAAC+AGG - chr4_4:69023869-69023888 None:intergenic 40.0%
TTCTTGTGGTCCCTAACTAT+TGG + chr4_4:69024067-69024086 Msa0698660:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_4:69024089-69024108 Msa0698660:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_4:69024136-69024155 Msa0698660:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_4:69024169-69024188 Msa0698660:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_4:69024330-69024349 Msa0698660:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_4:69024420-69024439 None:intergenic 40.0%
TCATACTTGGTATGCTCTAG+AGG - chr4_4:69024443-69024462 None:intergenic 40.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_4:69022288-69022307 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_4:69022319-69022338 Msa0698660:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_4:69022502-69022521 Msa0698660:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_4:69022563-69022582 Msa0698660:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_4:69022686-69022705 Msa0698660:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_4:69022700-69022719 Msa0698660:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_4:69022764-69022783 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_4:69022786-69022805 Msa0698660:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_4:69023251-69023270 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_4:69023393-69023412 Msa0698660:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_4:69023411-69023430 Msa0698660:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_4:69023494-69023513 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_4:69023501-69023520 Msa0698660:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_4:69024116-69024135 Msa0698660:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_4:69024132-69024151 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_4:69024141-69024160 Msa0698660:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_4:69024155-69024174 Msa0698660:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_4:69024158-69024177 Msa0698660:CDS 45.0%
!! TACTTGGTATGCTCTAGAGG+AGG - chr4_4:69024440-69024459 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_4:69022288-69022307 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_4:69022319-69022338 Msa0698660:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_4:69022502-69022521 Msa0698660:CDS 45.0%
! GCAAAAGCATGGTATGTGGT+TGG + chr4_4:69022563-69022582 Msa0698660:intron 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_4:69022686-69022705 Msa0698660:CDS 45.0%
CAGGTCTGGCAAAATTGTTG+TGG + chr4_4:69022700-69022719 Msa0698660:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_4:69022764-69022783 None:intergenic 45.0%
!! AGATTGAAGGATGGACTGCT+AGG + chr4_4:69022786-69022805 Msa0698660:CDS 45.0%
TCAAGACTCCAACGTCAATG+TGG - chr4_4:69023251-69023270 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_4:69023393-69023412 Msa0698660:intron 45.0%
AGGGGTTAACCAGAACAATC+CGG + chr4_4:69023411-69023430 Msa0698660:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_4:69023494-69023513 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_4:69023501-69023520 Msa0698660:intron 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_4:69024116-69024135 Msa0698660:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_4:69024132-69024151 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_4:69024141-69024160 Msa0698660:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_4:69024155-69024174 Msa0698660:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_4:69024158-69024177 Msa0698660:CDS 45.0%
!! TACTTGGTATGCTCTAGAGG+AGG - chr4_4:69024440-69024459 None:intergenic 45.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_4:69023770-69023789 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_4:69023771-69023790 None:intergenic 5.0%
!! AAATTAAAATATTAAAAGAT+GGG - chr4_4:69023770-69023789 None:intergenic 5.0%
!! TAAATTAAAATATTAAAAGA+TGG - chr4_4:69023771-69023790 None:intergenic 5.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_4:69022267-69022286 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_4:69022805-69022824 Msa0698660:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_4:69023423-69023442 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_4:69024124-69024143 Msa0698660:CDS 50.0%
GGGTTACGGAAGCCTCAAAA+TGG - chr4_4:69022267-69022286 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_4:69022805-69022824 Msa0698660:CDS 50.0%
CAAACACTGCCGGATTGTTC+TGG - chr4_4:69023423-69023442 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_4:69024124-69024143 Msa0698660:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 69022247 69024471 69022247 ID=Msa0698660;Name=Msa0698660
chr4_4 mRNA 69022247 69024471 69022247 ID=Msa0698660-mRNA-1;Parent=Msa0698660;Name=Msa0698660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=99|1|1|1|0.66|0.5|4|266|130
chr4_4 exon 69022247 69022340 69022247 ID=Msa0698660-mRNA-1:exon:20614;Parent=Msa0698660-mRNA-1
chr4_4 exon 69022436 69022573 69022436 ID=Msa0698660-mRNA-1:exon:20615;Parent=Msa0698660-mRNA-1
chr4_4 exon 69022666 69022826 69022666 ID=Msa0698660-mRNA-1:exon:20616;Parent=Msa0698660-mRNA-1
chr4_4 exon 69024107 69024471 69024107 ID=Msa0698660-mRNA-1:exon:20617;Parent=Msa0698660-mRNA-1
chr4_4 five_prime_UTR 69022247 69022340 69022247 ID=Msa0698660-mRNA-1:five_prime_utr;Parent=Msa0698660-mRNA-1
chr4_4 five_prime_UTR 69022436 69022440 69022436 ID=Msa0698660-mRNA-1:five_prime_utr;Parent=Msa0698660-mRNA-1
chr4_4 CDS 69022441 69022573 69022441 ID=Msa0698660-mRNA-1:cds;Parent=Msa0698660-mRNA-1
chr4_4 CDS 69022666 69022826 69022666 ID=Msa0698660-mRNA-1:cds;Parent=Msa0698660-mRNA-1
chr4_4 CDS 69024107 69024205 69024107 ID=Msa0698660-mRNA-1:cds;Parent=Msa0698660-mRNA-1
chr4_4 three_prime_UTR 69024206 69024471 69024206 ID=Msa0698660-mRNA-1:three_prime_utr;Parent=Msa0698660-mRNA-1
Gene Sequence

>Msa0698660

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTGAAGAGCATGTACAATGCTGAGAAACGTGGGAAGCGCCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATCGTCATGCAAAAGCATGGATATATTGGAGAGTTCGAATACGTTGATGATCACAGGTCTGGCAAAATTGTTGTGGAATTGAATGGAAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTCGATGTTGGTGTCAAAGAGATTGAAGGATGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0698660

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*