Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420920 | XP_013460619.1 | 52.846 | 123 | 47 | 4 | 104 | 223 | 16 | 130 | 4.32e-27 | 111 |
| Msa0420920 | XP_013460619.1 | 80.165 | 121 | 23 | 1 | 1 | 120 | 1 | 121 | 1.04e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420920 | sp|Q9ZQX0|ALB1_GLYSO | 51.923 | 104 | 41 | 5 | 106 | 204 | 11 | 110 | 3.20e-21 | 88.2 |
| Msa0420920 | sp|Q9ZQX0|ALB1_GLYSO | 43.564 | 101 | 50 | 4 | 9 | 105 | 1 | 98 | 2.55e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420920 | I3S3Q2 | 52.846 | 123 | 47 | 4 | 104 | 223 | 16 | 130 | 2.06e-27 | 111 |
| Msa0420920 | I3S3Q2 | 80.165 | 121 | 23 | 1 | 1 | 120 | 1 | 121 | 4.95e-62 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0420920 | 0.807747 | 4.345593e-50 | -8.615850e-47 |
| Msa0045810 | Msa0420920 | 0.819750 | 9.856170e-53 | -8.615850e-47 |
| Msa0062190 | Msa0420920 | 0.805383 | 1.370735e-49 | -8.615850e-47 |
| Msa0106540 | Msa0420920 | 0.819744 | 9.887072e-53 | -8.615850e-47 |
| Msa0206370 | Msa0420920 | 0.811560 | 6.585089e-51 | -8.615850e-47 |
| Msa0387930 | Msa0420920 | 0.803547 | 3.309477e-49 | -8.615850e-47 |
| Msa0404140 | Msa0420920 | 0.817036 | 4.060328e-52 | -8.615850e-47 |
| Msa0420920 | Msa0437480 | 0.845078 | 5.080695e-59 | -8.615850e-47 |
| Msa0420920 | Msa0440350 | 0.823016 | 1.737992e-53 | -8.615850e-47 |
| Msa0420920 | Msa0484210 | -0.823067 | 1.690593e-53 | -8.615850e-47 |
| Msa0420920 | Msa0549960 | 0.813858 | 2.069337e-51 | -8.615850e-47 |
| Msa0420920 | Msa0565700 | 0.807852 | 4.127577e-50 | -8.615850e-47 |
| Msa0420920 | Msa0567570 | 0.804564 | 2.033015e-49 | -8.615850e-47 |
| Msa0420920 | Msa0646010 | 0.809228 | 2.099373e-50 | -8.615850e-47 |
| Msa0420920 | Msa0646430 | 0.819837 | 9.417680e-53 | -8.615850e-47 |
| Msa0420920 | Msa0758780 | -0.806321 | 8.707317e-50 | -8.615850e-47 |
| Msa0420920 | Msa0758810 | -0.808840 | 2.541902e-50 | -8.615850e-47 |
| Msa0420920 | Msa0838620 | -0.830296 | 3.181462e-55 | -8.615850e-47 |
| Msa0420920 | Msa0880910 | 0.809087 | 2.249710e-50 | -8.615850e-47 |
| Msa0420920 | Msa0945030 | 0.800500 | 1.399725e-48 | -8.615850e-47 |
| Msa0420920 | Msa0967780 | 0.813090 | 3.051310e-51 | -8.615850e-47 |
| Msa0420920 | Msa1088320 | 0.806317 | 8.724848e-50 | -8.615850e-47 |
| Msa0420920 | Msa1165460 | 0.820701 | 5.969474e-53 | -8.615850e-47 |
| Msa0420920 | Msa1206920 | 0.801574 | 8.445333e-49 | -8.615850e-47 |
| Msa0420920 | Msa1257200 | 0.805684 | 1.185422e-49 | -8.615850e-47 |
| Msa0420920 | Msa1405830 | 0.818879 | 1.556453e-52 | -8.615850e-47 |
| Msa0420920 | Msa1407810 | 0.800157 | 1.643795e-48 | -8.615850e-47 |
| Msa0420920 | Msa1433360 | 0.800059 | 1.721457e-48 | -8.615850e-47 |
| Msa0420920 | Msa1437780 | 0.800255 | 1.570398e-48 | -8.615850e-47 |
| Msa0354840 | Msa0420920 | 0.843993 | 9.956907e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420920 | MtrunA17_Chr3g0111241 | 80.165 | 121 | 23 | 1 | 1 | 120 | 1 | 121 | 9.53e-66 | 199 |
| Msa0420920 | MtrunA17_Chr3g0111241 | 52.846 | 123 | 47 | 4 | 104 | 223 | 16 | 130 | 3.97e-31 | 111 |
| Msa0420920 | MtrunA17_Chr3g0111351 | 70.312 | 128 | 38 | 0 | 1 | 128 | 9 | 136 | 1.69e-60 | 186 |
| Msa0420920 | MtrunA17_Chr3g0111351 | 52.459 | 122 | 55 | 2 | 104 | 223 | 24 | 144 | 3.26e-33 | 117 |
| Msa0420920 | MtrunA17_Chr3g0111131 | 57.018 | 114 | 48 | 1 | 104 | 216 | 16 | 129 | 6.71e-42 | 138 |
| Msa0420920 | MtrunA17_Chr3g0111131 | 53.043 | 115 | 52 | 2 | 1 | 114 | 1 | 114 | 5.21e-31 | 110 |
| Msa0420920 | MtrunA17_Chr3g0111071 | 56.034 | 116 | 50 | 1 | 104 | 219 | 16 | 130 | 4.88e-39 | 131 |
| Msa0420920 | MtrunA17_Chr3g0111071 | 54.717 | 106 | 44 | 2 | 1 | 105 | 1 | 103 | 1.23e-29 | 107 |
| Msa0420920 | MtrunA17_Chr3g0111111 | 53.906 | 128 | 48 | 3 | 104 | 223 | 16 | 140 | 1.16e-38 | 130 |
| Msa0420920 | MtrunA17_Chr3g0111111 | 49.167 | 120 | 53 | 3 | 1 | 114 | 1 | 118 | 3.82e-29 | 106 |
| Msa0420920 | MtrunA17_Chr3g0111081 | 55.172 | 116 | 51 | 1 | 104 | 219 | 16 | 130 | 2.20e-38 | 130 |
| Msa0420920 | MtrunA17_Chr3g0111081 | 53.774 | 106 | 45 | 2 | 1 | 105 | 1 | 103 | 2.08e-29 | 107 |
| Msa0420920 | MtrunA17_Chr3g0111281 | 55.200 | 125 | 51 | 2 | 104 | 223 | 16 | 140 | 2.43e-35 | 122 |
| Msa0420920 | MtrunA17_Chr3g0111281 | 50.000 | 116 | 47 | 4 | 1 | 109 | 1 | 112 | 2.82e-27 | 101 |
| Msa0420920 | MtrunA17_Chr7g0236801 | 51.200 | 125 | 53 | 4 | 105 | 223 | 17 | 139 | 2.14e-32 | 114 |
| Msa0420920 | MtrunA17_Chr7g0236801 | 36.111 | 108 | 64 | 3 | 1 | 104 | 1 | 107 | 1.67e-12 | 62.8 |
| Msa0420920 | MtrunA17_Chr6g0464071 | 47.059 | 119 | 62 | 1 | 105 | 223 | 17 | 134 | 5.70e-31 | 110 |
| Msa0420920 | MtrunA17_Chr6g0464071 | 46.667 | 105 | 52 | 3 | 1 | 104 | 1 | 102 | 1.38e-17 | 76.3 |
| Msa0420920 | MtrunA17_Chr3g0111221 | 51.754 | 114 | 55 | 0 | 110 | 223 | 1 | 114 | 4.21e-30 | 108 |
| Msa0420920 | MtrunA17_Chr3g0111221 | 52.381 | 84 | 39 | 1 | 22 | 105 | 1 | 83 | 4.47e-23 | 89.7 |
| Msa0420920 | MtrunA17_Chr3g0104571 | 49.580 | 119 | 58 | 2 | 104 | 221 | 17 | 134 | 3.16e-29 | 106 |
| Msa0420920 | MtrunA17_Chr3g0104571 | 43.810 | 105 | 56 | 2 | 1 | 104 | 1 | 103 | 1.98e-21 | 86.3 |
| Msa0420920 | MtrunA17_Chr3g0111261 | 52.800 | 125 | 50 | 5 | 104 | 223 | 16 | 136 | 1.12e-28 | 105 |
| Msa0420920 | MtrunA17_Chr3g0111261 | 48.246 | 114 | 48 | 7 | 1 | 109 | 1 | 108 | 4.48e-22 | 87.8 |
| Msa0420920 | MtrunA17_Chr3g0111191 | 49.550 | 111 | 48 | 3 | 1 | 105 | 1 | 109 | 4.35e-28 | 102 |
| Msa0420920 | MtrunA17_Chr3g0111191 | 47.115 | 104 | 44 | 3 | 105 | 200 | 17 | 117 | 6.25e-24 | 92.0 |
| Msa0420920 | MtrunA17_Chr3g0111311 | 56.383 | 94 | 39 | 2 | 110 | 203 | 1 | 92 | 7.72e-26 | 96.3 |
| Msa0420920 | MtrunA17_Chr3g0111311 | 52.688 | 93 | 41 | 2 | 22 | 114 | 1 | 90 | 2.09e-22 | 87.4 |
| Msa0420920 | MtrunA17_Chr3g0111201 | 79.630 | 54 | 11 | 0 | 170 | 223 | 3 | 56 | 1.21e-25 | 94.7 |
| Msa0420920 | MtrunA17_Chr7g0236791 | 45.902 | 122 | 63 | 2 | 105 | 223 | 17 | 138 | 1.30e-25 | 97.1 |
| Msa0420920 | MtrunA17_Chr7g0236791 | 41.121 | 107 | 61 | 2 | 1 | 105 | 1 | 107 | 3.04e-18 | 77.8 |
| Msa0420920 | MtrunA17_Chr3g0090571 | 41.045 | 134 | 62 | 3 | 105 | 221 | 17 | 150 | 2.69e-24 | 94.4 |
| Msa0420920 | MtrunA17_Chr3g0090571 | 38.017 | 121 | 66 | 4 | 1 | 114 | 1 | 119 | 1.94e-16 | 73.6 |
| Msa0420920 | MtrunA17_Chr6g0468601 | 40.171 | 117 | 68 | 1 | 105 | 219 | 17 | 133 | 4.53e-24 | 93.2 |
| Msa0420920 | MtrunA17_Chr6g0468601 | 37.963 | 108 | 62 | 3 | 1 | 105 | 1 | 106 | 1.54e-15 | 70.9 |
| Msa0420920 | MtrunA17_Chr6g0468621 | 43.590 | 117 | 61 | 3 | 105 | 219 | 17 | 130 | 7.68e-24 | 92.4 |
| Msa0420920 | MtrunA17_Chr6g0468621 | 34.783 | 115 | 70 | 3 | 1 | 114 | 1 | 111 | 1.19e-14 | 68.2 |
| Msa0420920 | MtrunA17_Chr6g0456991 | 46.364 | 110 | 53 | 4 | 107 | 212 | 1 | 108 | 9.93e-24 | 91.3 |
| Msa0420920 | MtrunA17_Chr6g0456991 | 41.111 | 90 | 47 | 3 | 19 | 105 | 1 | 87 | 9.07e-14 | 65.5 |
| Msa0420920 | MtrunA17_Chr3g0111711 | 48.113 | 106 | 46 | 4 | 1 | 100 | 1 | 103 | 1.17e-22 | 88.6 |
| Msa0420920 | MtrunA17_Chr3g0111711 | 48.889 | 90 | 36 | 6 | 105 | 187 | 17 | 103 | 1.46e-13 | 64.7 |
| Msa0420920 | MtrunA17_Chr7g0232011 | 45.946 | 111 | 54 | 4 | 109 | 218 | 20 | 125 | 6.29e-22 | 87.8 |
| Msa0420920 | MtrunA17_Chr7g0232011 | 41.905 | 105 | 56 | 3 | 1 | 105 | 1 | 100 | 2.38e-16 | 73.2 |
| Msa0420920 | MtrunA17_Chr4g0012121 | 40.000 | 125 | 62 | 4 | 105 | 219 | 18 | 139 | 8.90e-21 | 84.7 |
| Msa0420920 | MtrunA17_Chr4g0012121 | 40.777 | 103 | 39 | 5 | 17 | 105 | 18 | 112 | 3.10e-12 | 62.0 |
| Msa0420920 | MtrunA17_Chr6g0456951 | 43.697 | 119 | 61 | 5 | 105 | 219 | 17 | 133 | 5.96e-20 | 82.4 |
| Msa0420920 | MtrunA17_Chr6g0456951 | 47.664 | 107 | 50 | 6 | 1 | 104 | 1 | 104 | 9.69e-20 | 82.0 |
| Msa0420920 | MtrunA17_Chr8g0344801 | 51.948 | 77 | 34 | 2 | 146 | 219 | 19 | 95 | 1.93e-19 | 80.1 |
| Msa0420920 | MtrunA17_Chr8g0344791 | 43.269 | 104 | 57 | 2 | 115 | 216 | 5 | 108 | 2.31e-19 | 80.5 |
| Msa0420920 | MtrunA17_Chr1g0153591 | 41.509 | 106 | 49 | 3 | 105 | 209 | 17 | 110 | 4.63e-19 | 79.3 |
| Msa0420920 | MtrunA17_Chr1g0153591 | 39.623 | 106 | 50 | 4 | 1 | 105 | 1 | 93 | 3.52e-15 | 68.9 |
| Msa0420920 | MtrunA17_Chr8g0344771 | 42.991 | 107 | 58 | 3 | 115 | 219 | 5 | 110 | 1.06e-18 | 78.6 |
| Msa0420920 | MtrunA17_Chr8g0359071 | 41.000 | 100 | 56 | 2 | 106 | 204 | 19 | 116 | 2.07e-18 | 78.6 |
| Msa0420920 | MtrunA17_Chr8g0359071 | 36.634 | 101 | 58 | 3 | 7 | 105 | 8 | 104 | 1.08e-13 | 65.9 |
| Msa0420920 | MtrunA17_Chr7g0231991 | 50.602 | 83 | 37 | 2 | 141 | 219 | 32 | 114 | 2.33e-18 | 78.2 |
| Msa0420920 | MtrunA17_Chr7g0225821 | 38.679 | 106 | 59 | 3 | 105 | 207 | 19 | 121 | 3.47e-18 | 77.4 |
| Msa0420920 | MtrunA17_Chr8g0357331 | 42.222 | 90 | 41 | 1 | 143 | 221 | 8 | 97 | 7.62e-16 | 70.5 |
| Msa0420920 | MtrunA17_Chr6g0483481 | 35.965 | 114 | 67 | 3 | 107 | 214 | 1 | 114 | 1.91e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCATCATTATTGAAATT+TGG | 0.185062 | 3_2:-69730053 | None:intergenic |
| CCTAATTCTGATCTCAAATA+TGG | 0.203776 | 3_2:+69729816 | Msa0420920:CDS |
| TTTGTTTCCGACTAAATAAT+TGG | 0.220013 | 3_2:+69730014 | Msa0420920:three_prime_UTR |
| CCTAATTCTGATATCAAATA+TGG | 0.235651 | 3_2:+69726672 | Msa0420920:CDS |
| CCATATTTGATATCAGAATT+AGG | 0.279617 | 3_2:-69726672 | None:intergenic |
| GTCTTCTTGCTTGCTGTATT+CGG | 0.286162 | 3_2:+69726126 | Msa0420920:CDS |
| ACGGATGCTTTGACTCTTCC+TGG | 0.296264 | 3_2:+69726537 | Msa0420920:CDS |
| CCATATTTGAGATCAGAATT+AGG | 0.311873 | 3_2:-69729816 | None:intergenic |
| TGCAATATACAGGATCCTTT+TGG | 0.362084 | 3_2:+69729672 | Msa0420920:CDS |
| GTATCAGATTGACATAAGTT+AGG | 0.366130 | 3_2:-69729750 | None:intergenic |
| ATGATGCATGTGCATGGTTT+TGG | 0.375072 | 3_2:+69730066 | Msa0420920:three_prime_UTR |
| GTCATTTACAGTAATGTTCC+CGG | 0.376451 | 3_2:+69729572 | Msa0420920:intron |
| CAATGACTGCTACAATCATT+AGG | 0.405000 | 3_2:-69729645 | None:intergenic |
| ATCAATCAATGGCTAATGTT+AGG | 0.420426 | 3_2:+69726088 | Msa0420920:exon |
| TTGTTTCCGACTAAATAATT+GGG | 0.426439 | 3_2:+69730015 | Msa0420920:three_prime_UTR |
| ACTTACTTCTATTGAAAAGA+AGG | 0.442919 | 3_2:+69726572 | Msa0420920:CDS |
| TTCCCGGTGAAGAAAATAGA+AGG | 0.445302 | 3_2:+69729588 | Msa0420920:CDS |
| GCATGAGACCAACATAAGTT+AGG | 0.446047 | 3_2:-69726606 | None:intergenic |
| AAGATACCCAATTATTTAGT+CGG | 0.456374 | 3_2:-69730021 | None:intergenic |
| TCATATGTATAATATATAGT+TGG | 0.456737 | 3_2:+69730148 | Msa0420920:three_prime_UTR |
| CATCATTATTGAAATTTGGA+TGG | 0.456842 | 3_2:-69730049 | None:intergenic |
| TTCTCGATGAAGAAAATAGA+AGG | 0.459780 | 3_2:+69726441 | Msa0420920:CDS |
| ATGCTTTGACTCTTCCTGGC+TGG | 0.478086 | 3_2:+69726541 | Msa0420920:CDS |
| AGAAGGAGATGAATGTCAAC+GGG | 0.480982 | 3_2:+69729605 | Msa0420920:CDS |
| GTCTTCTGCTTCAGCGATAG+AGG | 0.488560 | 3_2:-69729850 | None:intergenic |
| GTAAGTGTGGCGCACCAGCC+AGG | 0.501795 | 3_2:-69726555 | None:intergenic |
| TCATGCTGAATGCATAAGAA+AGG | 0.509862 | 3_2:+69726623 | Msa0420920:CDS |
| GAATGCAGAAACAAGGGTAG+TGG | 0.517874 | 3_2:+69729774 | Msa0420920:CDS |
| AAAATAGAAGGAGCAAAGTG+TGG | 0.520085 | 3_2:+69726453 | Msa0420920:CDS |
| AAACAATAGTATATTGTAGC+TGG | 0.522064 | 3_2:+69726049 | Msa0420920:five_prime_UTR |
| TTGACATATCGATATTAAGC+TGG | 0.524156 | 3_2:-69729930 | None:intergenic |
| AAATAGAAGGAGCAAAGTGT+GGG | 0.528749 | 3_2:+69726454 | Msa0420920:CDS |
| TTCTATTGAAAAGAAGGTTG+AGG | 0.541325 | 3_2:+69726578 | Msa0420920:CDS |
| TGGTTGTCGTTGCTTTGTCA+CGG | 0.545803 | 3_2:+69726518 | Msa0420920:CDS |
| AGGAACTACCTAACTTATGT+TGG | 0.546452 | 3_2:+69726598 | Msa0420920:CDS |
| CAGACGCCCCAATAACCAAA+AGG | 0.549388 | 3_2:-69729687 | None:intergenic |
| CATGCTGAATGCATAAGAAA+GGG | 0.550324 | 3_2:+69726624 | Msa0420920:CDS |
| ATTCTGATCTCAAATATGGC+TGG | 0.552618 | 3_2:+69729820 | Msa0420920:CDS |
| TGATACTGAATGCAGAAACA+AGG | 0.566776 | 3_2:+69729767 | Msa0420920:CDS |
| ATATATATATCTAGCATGGT+AGG | 0.570607 | 3_2:-69729958 | None:intergenic |
| AATGCAGAAACAAGGGTAGT+GGG | 0.582892 | 3_2:+69729775 | Msa0420920:CDS |
| TAGAAGGAGATGAATGTCAA+CGG | 0.592858 | 3_2:+69729604 | Msa0420920:CDS |
| AGCAGAAGACGCATTCAAGA+TGG | 0.599731 | 3_2:+69729863 | Msa0420920:CDS |
| CATAATATATATATCTAGCA+TGG | 0.601730 | 3_2:-69729962 | None:intergenic |
| AATGCATAAGAAAGGGTAGT+GGG | 0.610428 | 3_2:+69726631 | Msa0420920:CDS |
| AATAGAAGGAGCAAAGTGTG+GGG | 0.621188 | 3_2:+69726455 | Msa0420920:CDS |
| TCAATAATGATGCATGTGCA+TGG | 0.632199 | 3_2:+69730060 | Msa0420920:three_prime_UTR |
| GAATGCATAAGAAAGGGTAG+TGG | 0.639235 | 3_2:+69726630 | Msa0420920:CDS |
| GATACTGAATGCAGAAACAA+GGG | 0.651338 | 3_2:+69729768 | Msa0420920:CDS |
| AGAAGGAGCAAAGTGTGGGG+AGG | 0.684675 | 3_2:+69726458 | Msa0420920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTTTTAATTAG+CGG | - | chr3_2:69726273-69726292 | None:intergenic | 10.0% |
| !!! | TTTTTTATGTTCTTTTTAAA+AGG | - | chr3_2:69727290-69727309 | None:intergenic | 10.0% |
| !!! | AATATACATTTTATTTAGTA+TGG | - | chr3_2:69727365-69727384 | None:intergenic | 10.0% |
| !! | CATATATTAGTTAAAAAATA+TGG | + | chr3_2:69727815-69727834 | Msa0420920:intron | 10.0% |
| !!! | ATTTATATTTTGTTGATATT+TGG | + | chr3_2:69728436-69728455 | Msa0420920:intron | 10.0% |
| !! | CATTTATACTTTATATATAA+AGG | + | chr3_2:69728821-69728840 | Msa0420920:intron | 10.0% |
| !! | GATAAACTAATTTAAATTAA+AGG | - | chr3_2:69728886-69728905 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAGATAATTGTTT+TGG | - | chr3_2:69728966-69728985 | None:intergenic | 10.0% |
| !!! | ATTTAATTTATAATAACCAT+TGG | - | chr3_2:69729417-69729436 | None:intergenic | 10.0% |
| !! | TTATAAATTAAATAATCCAA+TGG | + | chr3_2:69729424-69729443 | Msa0420920:intron | 10.0% |
| !!! | AAACATGTAAATATTGTTTT+TGG | - | chr3_2:69727059-69727078 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTATGGATAATT+TGG | - | chr3_2:69727178-69727197 | None:intergenic | 15.0% |
| !!! | AATAGATGTCATTTAAAATT+TGG | + | chr3_2:69727591-69727610 | Msa0420920:intron | 15.0% |
| !!! | AATTTTAAACGATTAACTTT+TGG | - | chr3_2:69727651-69727670 | None:intergenic | 15.0% |
| !! | TAGTTTGATTAATAAATGAT+TGG | + | chr3_2:69729014-69729033 | Msa0420920:intron | 15.0% |
| !! | AGTTTGATTAATAAATGATT+GGG | + | chr3_2:69729015-69729034 | Msa0420920:intron | 15.0% |
| !! | CTTAGAAAAGATAATTTAAT+CGG | - | chr3_2:69729046-69729065 | None:intergenic | 15.0% |
| !!! | GATTAAATTATCTTTTCTAA+GGG | + | chr3_2:69729045-69729064 | Msa0420920:intron | 15.0% |
| !! | AAAAAAGAACTTTAGTAATT+CGG | - | chr3_2:69729152-69729171 | None:intergenic | 15.0% |
| !!! | TGATTTTATTCTTCTAATAA+CGG | + | chr3_2:69729516-69729535 | Msa0420920:intron | 15.0% |
| !! | TCATATGTATAATATATAGT+TGG | + | chr3_2:69730148-69730167 | Msa0420920:three_prime_UTR | 15.0% |
| !! | AATGCAAGAATGATATATAT+TGG | - | chr3_2:69726176-69726195 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTAATTAGCGG+AGG | - | chr3_2:69726270-69726289 | None:intergenic | 20.0% |
| !! | TAATATATATCTAGCATCAT+AGG | - | chr3_2:69726819-69726838 | None:intergenic | 20.0% |
| !! | ATGTACTCCTTTAAATAAAT+AGG | + | chr3_2:69726846-69726865 | Msa0420920:intron | 20.0% |
| !! | TAAGAAGCCTATTTATTTAA+AGG | - | chr3_2:69726856-69726875 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTCAAGTAATCA+AGG | + | chr3_2:69726941-69726960 | Msa0420920:intron | 20.0% |
| !!! | AAACGACATGTATTTTAAAA+TGG | + | chr3_2:69727874-69727893 | Msa0420920:intron | 20.0% |
| !! | ATAAATCATCCTTACAAAAT+CGG | + | chr3_2:69728461-69728480 | Msa0420920:intron | 20.0% |
| !! | ATAAACATGTGTTTATAAGT+GGG | - | chr3_2:69728506-69728525 | None:intergenic | 20.0% |
| !! | TATTAAGTATGTACTATGTT+TGG | - | chr3_2:69728682-69728701 | None:intergenic | 20.0% |
| !!! | GTGTATACTTTAAATTTTGT+TGG | + | chr3_2:69728757-69728776 | Msa0420920:intron | 20.0% |
| !! | ATTTAAATTAAAGGTAACAG+TGG | - | chr3_2:69728877-69728896 | None:intergenic | 20.0% |
| !!! | CGATTAAATTATCTTTTCTA+AGG | + | chr3_2:69729044-69729063 | Msa0420920:intron | 20.0% |
| !!! | CAATTTTAGATAGAAAAAAC+AGG | - | chr3_2:69729284-69729303 | None:intergenic | 20.0% |
| !!! | CTGTTTTTTCTATCTAAAAT+TGG | + | chr3_2:69729282-69729301 | Msa0420920:intron | 20.0% |
| !! | ATTTATAATAACCATTGGAT+TGG | - | chr3_2:69729412-69729431 | None:intergenic | 20.0% |
| !! | CATAATATATATATCTAGCA+TGG | - | chr3_2:69729965-69729984 | None:intergenic | 20.0% |
| ! | AAACAATAGTATATTGTAGC+TGG | + | chr3_2:69726049-69726068 | Msa0420920:five_prime_UTR | 25.0% |
| !! | TCTTTTGATCAATCAATCAA+TGG | + | chr3_2:69726077-69726096 | Msa0420920:exon | 25.0% |
| ! | ACTTACTTCTATTGAAAAGA+AGG | + | chr3_2:69726572-69726591 | Msa0420920:CDS | 25.0% |
| ! | CCATATTTGATATCAGAATT+AGG | - | chr3_2:69726675-69726694 | None:intergenic | 25.0% |
| ! | CCTAATTCTGATATCAAATA+TGG | + | chr3_2:69726672-69726691 | Msa0420920:CDS | 25.0% |
| !!! | TTGTTTTTGGTTATCATAAC+CGG | - | chr3_2:69727046-69727065 | None:intergenic | 25.0% |
| ! | GTTGAAATGATTCTTCTTTA+TGG | + | chr3_2:69727126-69727145 | Msa0420920:intron | 25.0% |
| !! | TTAATGAGCTTTATCAAATG+AGG | - | chr3_2:69727504-69727523 | None:intergenic | 25.0% |
| ! | TTAAATGACATCTATTTGCA+GGG | - | chr3_2:69727587-69727606 | None:intergenic | 25.0% |
| ! | TTTAAATGACATCTATTTGC+AGG | - | chr3_2:69727588-69727607 | None:intergenic | 25.0% |
| ! | ACTCATATTTCTTACTTGAA+TGG | + | chr3_2:69727751-69727770 | Msa0420920:intron | 25.0% |
| !!! | GACATGTATTTTAAAATGGA+GGG | + | chr3_2:69727878-69727897 | Msa0420920:intron | 25.0% |
| ! | ATATGCTTATCTATAACTGA+GGG | - | chr3_2:69728084-69728103 | None:intergenic | 25.0% |
| ! | TATATGCTTATCTATAACTG+AGG | - | chr3_2:69728085-69728104 | None:intergenic | 25.0% |
| !!! | TAGAAGTTTTTTCTTTTGAG+AGG | + | chr3_2:69728103-69728122 | Msa0420920:intron | 25.0% |
| !!! | AGAAGTTTTTTCTTTTGAGA+GGG | + | chr3_2:69728104-69728123 | Msa0420920:intron | 25.0% |
| ! | CTTATTAAATTCACAAACGA+GGG | - | chr3_2:69728206-69728225 | None:intergenic | 25.0% |
| !! | TCTTTCTTTTGATCAATCAA+TGG | + | chr3_2:69726073-69726092 | Msa0420920:five_prime_UTR | 25.0% |
| ! | ATTGAAATACATACAGAATG+CGG | - | chr3_2:69728383-69728402 | None:intergenic | 25.0% |
| ! | TAGAAATGCATCGTATATAT+TGG | - | chr3_2:69728417-69728436 | None:intergenic | 25.0% |
| !!! | TTTTACAAACCGATTTTGTA+AGG | - | chr3_2:69728473-69728492 | None:intergenic | 25.0% |
| ! | TAAACATGTGTTTATAAGTG+GGG | - | chr3_2:69728505-69728524 | None:intergenic | 25.0% |
| ! | CATAAACATGTGTTTATAAG+TGG | - | chr3_2:69728507-69728526 | None:intergenic | 25.0% |
| !! | AAAAAGAGTATGTACTATGT+AGG | - | chr3_2:69728655-69728674 | None:intergenic | 25.0% |
| ! | GTACATACTTAATATTTGCT+TGG | + | chr3_2:69728688-69728707 | Msa0420920:intron | 25.0% |
| ! | ATACTTAATATTTGCTTGGT+TGG | + | chr3_2:69728692-69728711 | Msa0420920:intron | 25.0% |
| ! | TACTTAATATTTGCTTGGTT+GGG | + | chr3_2:69728693-69728712 | Msa0420920:intron | 25.0% |
| !! | AAAGGGAATATGTATTTTTC+AGG | + | chr3_2:69728839-69728858 | Msa0420920:intron | 25.0% |
| ! | ATCAATCTATACTTAACTCA+TGG | + | chr3_2:69729119-69729138 | Msa0420920:intron | 25.0% |
| !!! | AGTTCTTTTTTCTTAAGAAC+TGG | + | chr3_2:69729161-69729180 | Msa0420920:intron | 25.0% |
| ! | ATGTGGGTAATTGATTATTT+AGG | - | chr3_2:69729197-69729216 | None:intergenic | 25.0% |
| ! | AAAATCAAAATCCAATCCAA+TGG | + | chr3_2:69729398-69729417 | Msa0420920:intron | 25.0% |
| ! | AATAAAATCAGTCACCAATT+TGG | - | chr3_2:69729506-69729525 | None:intergenic | 25.0% |
| !!! | TCATTGTTTTTGCAATATAC+AGG | + | chr3_2:69729662-69729681 | Msa0420920:CDS | 25.0% |
| ! | ATATATATATCTAGCATGGT+AGG | - | chr3_2:69729961-69729980 | None:intergenic | 25.0% |
| ! | TTTGTTTCCGACTAAATAAT+TGG | + | chr3_2:69730014-69730033 | Msa0420920:three_prime_UTR | 25.0% |
| ! | TTGTTTCCGACTAAATAATT+GGG | + | chr3_2:69730015-69730034 | Msa0420920:three_prime_UTR | 25.0% |
| ! | AAGATACCCAATTATTTAGT+CGG | - | chr3_2:69730024-69730043 | None:intergenic | 25.0% |
| ! | CATCATTATTGAAATTTGGA+TGG | - | chr3_2:69730052-69730071 | None:intergenic | 25.0% |
| ! | CATGCATCATTATTGAAATT+TGG | - | chr3_2:69730056-69730075 | None:intergenic | 25.0% |
| ATCAATCAATGGCTAATGTT+AGG | + | chr3_2:69726088-69726107 | Msa0420920:exon | 30.0% | |
| ACCCATTATCATATCATATG+TGG | + | chr3_2:69726223-69726242 | Msa0420920:intron | 30.0% | |
| GCCACATATGATATGATAAT+GGG | - | chr3_2:69726227-69726246 | None:intergenic | 30.0% | |
| TGCCACATATGATATGATAA+TGG | - | chr3_2:69726228-69726247 | None:intergenic | 30.0% | |
| TTACCCACAAAATTTAGCAA+CGG | + | chr3_2:69726296-69726315 | Msa0420920:intron | 30.0% | |
| ! | TTTCCGTTGCTAAATTTTGT+GGG | - | chr3_2:69726302-69726321 | None:intergenic | 30.0% |
| ! | ATTTCCGTTGCTAAATTTTG+TGG | - | chr3_2:69726303-69726322 | None:intergenic | 30.0% |
| TTCTCGATGAAGAAAATAGA+AGG | + | chr3_2:69726441-69726460 | Msa0420920:CDS | 30.0% | |
| ! | CTTTTCAATAGAAGTAAGTG+TGG | - | chr3_2:69726571-69726590 | None:intergenic | 30.0% |
| TTCTATTGAAAAGAAGGTTG+AGG | + | chr3_2:69726578-69726597 | Msa0420920:CDS | 30.0% | |
| ! | CATGTCTTATGCTTTTGTTA+GGG | + | chr3_2:69726901-69726920 | Msa0420920:intron | 30.0% |
| ! | AAATAAAGCTACCCTCTTTT+AGG | - | chr3_2:69727094-69727113 | None:intergenic | 30.0% |
| !! | TAAAAGAGGGTAGCTTTATT+TGG | + | chr3_2:69727093-69727112 | Msa0420920:intron | 30.0% |
| AGAATCATTTCAACAGCATT+TGG | - | chr3_2:69727120-69727139 | None:intergenic | 30.0% | |
| TGGTTAAGAAAACAACACAA+TGG | - | chr3_2:69727249-69727268 | None:intergenic | 30.0% | |
| !! | CTTTTTAAAAGGAAGAGTAG+TGG | - | chr3_2:69727279-69727298 | None:intergenic | 30.0% |
| ! | TAAACGATTAACTTTTGGCA+GGG | - | chr3_2:69727646-69727665 | None:intergenic | 30.0% |
| ! | TTAAACGATTAACTTTTGGC+AGG | - | chr3_2:69727647-69727666 | None:intergenic | 30.0% |
| TCAGCAAGATTATTACATGA+GGG | - | chr3_2:69727678-69727697 | None:intergenic | 30.0% | |
| AACTAATATATGCGCATCAT+AGG | - | chr3_2:69727807-69727826 | None:intergenic | 30.0% | |
| !!! | CGACATGTATTTTAAAATGG+AGG | + | chr3_2:69727877-69727896 | Msa0420920:intron | 30.0% |
| CTCATAAAAGTCTTTACCAA+AGG | - | chr3_2:69727947-69727966 | None:intergenic | 30.0% | |
| !! | GGCATGTAAGTTATTTTCAA+AGG | - | chr3_2:69727979-69727998 | None:intergenic | 30.0% |
| ACAAACACAAACTTTGTACA+AGG | - | chr3_2:69728058-69728077 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTTTCTTTTGAGAG+GGG | + | chr3_2:69728105-69728124 | Msa0420920:intron | 30.0% |
| !!! | AAGTTTTTTCTTTTGAGAGG+GGG | + | chr3_2:69728106-69728125 | Msa0420920:intron | 30.0% |
| AATTGTTAACGGCTTCTATA+TGG | - | chr3_2:69728133-69728152 | None:intergenic | 30.0% | |
| CCTTATTAAATTCACAAACG+AGG | - | chr3_2:69728207-69728226 | None:intergenic | 30.0% | |
| CCTCGTTTGTGAATTTAATA+AGG | + | chr3_2:69728204-69728223 | Msa0420920:intron | 30.0% | |
| !! | CAAAATCGGTTTGTAAAATG+AGG | + | chr3_2:69728475-69728494 | Msa0420920:intron | 30.0% |
| GTTTCACGATAGATAAAATG+TGG | - | chr3_2:69728530-69728549 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCTTAAGAACTGG+AGG | + | chr3_2:69729164-69729183 | Msa0420920:intron | 30.0% |
| !!! | CTTTTTTCTTAAGAACTGGA+GGG | + | chr3_2:69729165-69729184 | Msa0420920:intron | 30.0% |
| TTACCCACATAATTTATGTG+AGG | + | chr3_2:69729207-69729226 | Msa0420920:intron | 30.0% | |
| TACCCACATAATTTATGTGA+GGG | + | chr3_2:69729208-69729227 | Msa0420920:intron | 30.0% | |
| TTCCCTCACATAAATTATGT+GGG | - | chr3_2:69729213-69729232 | None:intergenic | 30.0% | |
| TTTCCCTCACATAAATTATG+TGG | - | chr3_2:69729214-69729233 | None:intergenic | 30.0% | |
| ! | TTTTCCACTAAATCTATCGA+CGG | + | chr3_2:69729245-69729264 | Msa0420920:intron | 30.0% |
| AACGATTGAATTCTATCCAT+TGG | - | chr3_2:69729443-69729462 | None:intergenic | 30.0% | |
| ACTTCCTTCAATGAAAAAGA+TGG | + | chr3_2:69729716-69729735 | Msa0420920:CDS | 30.0% | |
| !! | TCAACCATCTTTTTCATTGA+AGG | - | chr3_2:69729723-69729742 | None:intergenic | 30.0% |
| GTATCAGATTGACATAAGTT+AGG | - | chr3_2:69729753-69729772 | None:intergenic | 30.0% | |
| ! | CCATATTTGAGATCAGAATT+AGG | - | chr3_2:69729819-69729838 | None:intergenic | 30.0% |
| CCTAATTCTGATCTCAAATA+TGG | + | chr3_2:69729816-69729835 | Msa0420920:CDS | 30.0% | |
| TTGACATATCGATATTAAGC+TGG | - | chr3_2:69729933-69729952 | None:intergenic | 30.0% | |
| !!! | GGTTTTGGCTATTTAAGATA+TGG | + | chr3_2:69730081-69730100 | Msa0420920:three_prime_UTR | 30.0% |
| AAAATAGAAGGAGCAAAGTG+TGG | + | chr3_2:69726453-69726472 | Msa0420920:CDS | 35.0% | |
| AAATAGAAGGAGCAAAGTGT+GGG | + | chr3_2:69726454-69726473 | Msa0420920:CDS | 35.0% | |
| !! | CAATTTAATTTTTGCGACGC+TGG | + | chr3_2:69726492-69726511 | Msa0420920:CDS | 35.0% |
| AGGAACTACCTAACTTATGT+TGG | + | chr3_2:69726598-69726617 | Msa0420920:CDS | 35.0% | |
| TCATGCTGAATGCATAAGAA+AGG | + | chr3_2:69726623-69726642 | Msa0420920:CDS | 35.0% | |
| CATGCTGAATGCATAAGAAA+GGG | + | chr3_2:69726624-69726643 | Msa0420920:CDS | 35.0% | |
| AATGCATAAGAAAGGGTAGT+GGG | + | chr3_2:69726631-69726650 | Msa0420920:CDS | 35.0% | |
| AAATAGGCTTCTTATGTGCA+TGG | + | chr3_2:69726862-69726881 | Msa0420920:intron | 35.0% | |
| AATAGGCTTCTTATGTGCAT+GGG | + | chr3_2:69726863-69726882 | Msa0420920:intron | 35.0% | |
| ! | GCATGTCTTATGCTTTTGTT+AGG | + | chr3_2:69726900-69726919 | Msa0420920:intron | 35.0% |
| !!! | TTTTTGGTTATCATAACCGG+TGG | - | chr3_2:69727043-69727062 | None:intergenic | 35.0% |
| !! | AACACAATGGTTCTAAAGTG+TGG | - | chr3_2:69727236-69727255 | None:intergenic | 35.0% |
| !! | GTTGTTTTCTTAACCAACGA+CGG | + | chr3_2:69727253-69727272 | Msa0420920:intron | 35.0% |
| GTTCTATCAGAAACCAAACT+TGG | + | chr3_2:69727471-69727490 | Msa0420920:intron | 35.0% | |
| ATGAGGAAAGAATCCAAGTT+TGG | - | chr3_2:69727487-69727506 | None:intergenic | 35.0% | |
| CTCAGCAAGATTATTACATG+AGG | - | chr3_2:69727679-69727698 | None:intergenic | 35.0% | |
| CTCATGTAATAATCTTGCTG+AGG | + | chr3_2:69727677-69727696 | Msa0420920:intron | 35.0% | |
| ATGTAATAATCTTGCTGAGG+TGG | + | chr3_2:69727680-69727699 | Msa0420920:intron | 35.0% | |
| TGTGGAAATCACTTGGTAAA+TGG | + | chr3_2:69727911-69727930 | Msa0420920:intron | 35.0% | |
| GTGGAAATCACTTGGTAAAT+GGG | + | chr3_2:69727912-69727931 | Msa0420920:intron | 35.0% | |
| TGGAAATCACTTGGTAAATG+GGG | + | chr3_2:69727913-69727932 | Msa0420920:intron | 35.0% | |
| AAATGGGGATTCATTTCCTT+TGG | + | chr3_2:69727928-69727947 | Msa0420920:intron | 35.0% | |
| CATATAAAGATTCGCGATGT+CGG | - | chr3_2:69728000-69728019 | None:intergenic | 35.0% | |
| CAAGCTGAGGTAATTGTTAA+CGG | - | chr3_2:69728144-69728163 | None:intergenic | 35.0% | |
| ATGCATCGTATATATTGGTG+AGG | - | chr3_2:69728412-69728431 | None:intergenic | 35.0% | |
| CTATCGTGAAACTCTTTAAG+TGG | + | chr3_2:69728538-69728557 | Msa0420920:intron | 35.0% | |
| ! | TTTCTAAGGGACAAATTGAC+AGG | + | chr3_2:69729058-69729077 | Msa0420920:intron | 35.0% |
| ! | TTCTAAGGGACAAATTGACA+GGG | + | chr3_2:69729059-69729078 | Msa0420920:intron | 35.0% |
| AGAAACGAAGTTCGATTCAT+AGG | + | chr3_2:69729082-69729101 | Msa0420920:intron | 35.0% | |
| ! | ATTGGTTCAGCTTTGCTATA+TGG | + | chr3_2:69729300-69729319 | Msa0420920:intron | 35.0% |
| GTCATTTACAGTAATGTTCC+CGG | + | chr3_2:69729572-69729591 | Msa0420920:intron | 35.0% | |
| ! | TCTCCTTCTATTTTCTTCAC+CGG | - | chr3_2:69729594-69729613 | None:intergenic | 35.0% |
| TAGAAGGAGATGAATGTCAA+CGG | + | chr3_2:69729604-69729623 | Msa0420920:CDS | 35.0% | |
| CAATGACTGCTACAATCATT+AGG | - | chr3_2:69729648-69729667 | None:intergenic | 35.0% | |
| ! | TGCAATATACAGGATCCTTT+TGG | + | chr3_2:69729672-69729691 | Msa0420920:CDS | 35.0% |
| !! | TACAGGATCCTTTTGGTTAT+TGG | + | chr3_2:69729679-69729698 | Msa0420920:CDS | 35.0% |
| !! | ACAGGATCCTTTTGGTTATT+GGG | + | chr3_2:69729680-69729699 | Msa0420920:CDS | 35.0% |
| TGATACTGAATGCAGAAACA+AGG | + | chr3_2:69729767-69729786 | Msa0420920:CDS | 35.0% | |
| GATACTGAATGCAGAAACAA+GGG | + | chr3_2:69729768-69729787 | Msa0420920:CDS | 35.0% | |
| ATTCTGATCTCAAATATGGC+TGG | + | chr3_2:69729820-69729839 | Msa0420920:CDS | 35.0% | |
| TCAATAATGATGCATGTGCA+TGG | + | chr3_2:69730060-69730079 | Msa0420920:three_prime_UTR | 35.0% | |
| !! | GTCTTCTTGCTTGCTGTATT+CGG | + | chr3_2:69726126-69726145 | Msa0420920:CDS | 40.0% |
| !! | TTTTAATTAGCGGAGGACAG+AGG | - | chr3_2:69726263-69726282 | None:intergenic | 40.0% |
| AATAGAAGGAGCAAAGTGTG+GGG | + | chr3_2:69726455-69726474 | Msa0420920:CDS | 40.0% | |
| GCATGAGACCAACATAAGTT+AGG | - | chr3_2:69726609-69726628 | None:intergenic | 40.0% | |
| GAATGCATAAGAAAGGGTAG+TGG | + | chr3_2:69726630-69726649 | Msa0420920:CDS | 40.0% | |
| AGCAGAAGACTCATTCAAGA+TGG | + | chr3_2:69726719-69726738 | Msa0420920:intron | 40.0% | |
| GCATAAGACATGCTGATGAA+AGG | - | chr3_2:69726893-69726912 | None:intergenic | 40.0% | |
| ACAATACCCAAACAAGAGAG+AGG | + | chr3_2:69727011-69727030 | Msa0420920:intron | 40.0% | |
| CAATACCCAAACAAGAGAGA+GGG | + | chr3_2:69727012-69727031 | Msa0420920:intron | 40.0% | |
| ! | CTAAACCCTCTCTCTTGTTT+GGG | - | chr3_2:69727020-69727039 | None:intergenic | 40.0% |
| TGTCTTTAGCCACCTAAAAG+AGG | + | chr3_2:69727079-69727098 | Msa0420920:intron | 40.0% | |
| GTCTTTAGCCACCTAAAAGA+GGG | + | chr3_2:69727080-69727099 | Msa0420920:intron | 40.0% | |
| ! | TAAAGCTACCCTCTTTTAGG+TGG | - | chr3_2:69727091-69727110 | None:intergenic | 40.0% |
| !! | AGAGCCATTTTCTCTGGTAA+CGG | - | chr3_2:69727410-69727429 | None:intergenic | 40.0% |
| !! | TGAACTAGAGCCATTTTCTC+TGG | - | chr3_2:69727416-69727435 | None:intergenic | 40.0% |
| TTAACCACGTCACAATCACT+TGG | + | chr3_2:69727520-69727539 | Msa0420920:intron | 40.0% | |
| ATAACCAAGTGATTGTGACG+TGG | - | chr3_2:69727527-69727546 | None:intergenic | 40.0% | |
| TGCCAGGATTAACGAATTCA+GGG | - | chr3_2:69727618-69727637 | None:intergenic | 40.0% | |
| ATGCCAGGATTAACGAATTC+AGG | - | chr3_2:69727619-69727638 | None:intergenic | 40.0% | |
| TGACGTGTCTTGCGTTAATT+GGG | + | chr3_2:69727714-69727733 | Msa0420920:intron | 40.0% | |
| CTTGCGTTAATTGGGATAAG+TGG | + | chr3_2:69727722-69727741 | Msa0420920:intron | 40.0% | |
| CCACTAAAATACACAAGCTG+AGG | - | chr3_2:69728157-69728176 | None:intergenic | 40.0% | |
| !! | CCTCAGCTTGTGTATTTTAG+TGG | + | chr3_2:69728154-69728173 | Msa0420920:intron | 40.0% |
| AATATTTGCTTGGTTGGGAG+TGG | + | chr3_2:69728698-69728717 | Msa0420920:intron | 40.0% | |
| ATATTTGCTTGGTTGGGAGT+GGG | + | chr3_2:69728699-69728718 | Msa0420920:intron | 40.0% | |
| ACTTCCGTCGATAGATTTAG+TGG | - | chr3_2:69729252-69729271 | None:intergenic | 40.0% | |
| CCAATTTGGAAAAAGCTGCT+TGG | - | chr3_2:69729492-69729511 | None:intergenic | 40.0% | |
| !! | CCAAGCAGCTTTTTCCAAAT+TGG | + | chr3_2:69729489-69729508 | Msa0420920:intron | 40.0% |
| TTCCCGGTGAAGAAAATAGA+AGG | + | chr3_2:69729588-69729607 | Msa0420920:CDS | 40.0% | |
| ! | CTCCTTCTATTTTCTTCACC+GGG | - | chr3_2:69729593-69729612 | None:intergenic | 40.0% |
| AGAAGGAGATGAATGTCAAC+GGG | + | chr3_2:69729605-69729624 | Msa0420920:CDS | 40.0% | |
| !! | CAGGATCCTTTTGGTTATTG+GGG | + | chr3_2:69729681-69729700 | Msa0420920:CDS | 40.0% |
| AATGCAGAAACAAGGGTAGT+GGG | + | chr3_2:69729775-69729794 | Msa0420920:CDS | 40.0% | |
| ! | ATGATGCATGTGCATGGTTT+TGG | + | chr3_2:69730066-69730085 | Msa0420920:three_prime_UTR | 40.0% |
| ! | AATTTTTGCGACGCTGGTGA+TGG | + | chr3_2:69726498-69726517 | Msa0420920:CDS | 45.0% |
| ! | TGGTTGTCGTTGCTTTGTCA+CGG | + | chr3_2:69726518-69726537 | Msa0420920:CDS | 45.0% |
| GTCTTCTGCTTCAGAGATAG+AGG | - | chr3_2:69726709-69726728 | None:intergenic | 45.0% | |
| GCTAAACCCTCTCTCTTGTT+TGG | - | chr3_2:69727021-69727040 | None:intergenic | 45.0% | |
| !!! | CATTTTCTCTGGTAACGGGA+TGG | - | chr3_2:69727405-69727424 | None:intergenic | 45.0% |
| CATCCCGTTACCAGAGAAAA+TGG | + | chr3_2:69727403-69727422 | Msa0420920:intron | 45.0% | |
| !! | GAGCCATTTTCTCTGGTAAC+GGG | - | chr3_2:69727409-69727428 | None:intergenic | 45.0% |
| GTCCCTGAATTCGTTAATCC+TGG | + | chr3_2:69727613-69727632 | Msa0420920:intron | 45.0% | |
| CTGACGTGTCTTGCGTTAAT+TGG | + | chr3_2:69727713-69727732 | Msa0420920:intron | 45.0% | |
| TCAACGCTGTGGAAATCACT+TGG | + | chr3_2:69727904-69727923 | Msa0420920:intron | 45.0% | |
| GCAAGCAAGAAGACAGCAAA+AGG | - | chr3_2:69726120-69726139 | None:intergenic | 45.0% | |
| GAAAAAGCTGCTTGGTACGA+TGG | - | chr3_2:69729484-69729503 | None:intergenic | 45.0% | |
| GAATGCAGAAACAAGGGTAG+TGG | + | chr3_2:69729774-69729793 | Msa0420920:CDS | 45.0% | |
| AGCAGAAGACGCATTCAAGA+TGG | + | chr3_2:69729863-69729882 | Msa0420920:CDS | 45.0% | |
| !! | TTATTCTTATAATATAATAA+TGG | + | chr3_2:69726369-69726388 | Msa0420920:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGTA+TGG | - | chr3_2:69727187-69727206 | None:intergenic | 5.0% |
| !!! | AAAATGTATATTTATTTTTT+TGG | + | chr3_2:69727373-69727392 | Msa0420920:intron | 5.0% |
| !!! | TTATTTATACTATATTTTAA+AGG | + | chr3_2:69727543-69727562 | Msa0420920:intron | 5.0% |
| !! | ATTTATACTTTATATATAAA+GGG | + | chr3_2:69728822-69728841 | Msa0420920:intron | 5.0% |
| ACGGATGCTTTGACTCTTCC+TGG | + | chr3_2:69726537-69726556 | Msa0420920:CDS | 50.0% | |
| ATGCTTTGACTCTTCCTGGC+TGG | + | chr3_2:69726541-69726560 | Msa0420920:CDS | 50.0% | |
| AAGAGAGAGGGTTTAGCCAC+CGG | + | chr3_2:69727024-69727043 | Msa0420920:intron | 50.0% | |
| !! | ATGGCTCTAGTTCAGTCGAG+AGG | + | chr3_2:69727422-69727441 | Msa0420920:intron | 50.0% |
| ! | TTTTGGCAGGGCAAAATGCC+AGG | - | chr3_2:69727634-69727653 | None:intergenic | 50.0% |
| ATGGAGGGTTATCAACGCTG+TGG | + | chr3_2:69727893-69727912 | Msa0420920:intron | 50.0% | |
| ATTCACAAACGAGGGACACG+AGG | - | chr3_2:69728198-69728217 | None:intergenic | 50.0% | |
| CACGACCTGCACACGATAAA+CGG | + | chr3_2:69729338-69729357 | Msa0420920:intron | 50.0% | |
| ACCTGCACACGATAAACGGT+GGG | + | chr3_2:69729342-69729361 | Msa0420920:intron | 50.0% | |
| !! | ACACGATAAACGGTGGGTTG+TGG | + | chr3_2:69729348-69729367 | Msa0420920:intron | 50.0% |
| CAGACGCCCCAATAACCAAA+AGG | - | chr3_2:69729690-69729709 | None:intergenic | 50.0% | |
| GTCTTCTGCTTCAGCGATAG+AGG | - | chr3_2:69729853-69729872 | None:intergenic | 50.0% | |
| AGAAGGAGCAAAGTGTGGGG+AGG | + | chr3_2:69726458-69726477 | Msa0420920:CDS | 55.0% | |
| GACCTGCACACGATAAACGG+TGG | + | chr3_2:69729341-69729360 | Msa0420920:intron | 55.0% | |
| ACCCACCGTTTATCGTGTGC+AGG | - | chr3_2:69729346-69729365 | None:intergenic | 55.0% | |
| TAGCGGAGGACAGAGGCAAG+CGG | - | chr3_2:69726256-69726275 | None:intergenic | 60.0% | |
| GGAAGAGTAGTGGCCGTCGT+TGG | - | chr3_2:69727269-69727288 | None:intergenic | 60.0% | |
| GTAAGTGTGGCGCACCAGCC+AGG | - | chr3_2:69726558-69726577 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69726037 | 69730195 | 69726037 | ID=Msa0420920;Name=Msa0420920 |
| chr3_2 | mRNA | 69726037 | 69730195 | 69726037 | ID=Msa0420920-mRNA-1;Parent=Msa0420920;Name=Msa0420920-mRNA-1;_AED=0.18;_eAED=0.18;_QI=59|0.5|0.66|1|0.5|0.33|3|257|223 |
| chr3_2 | exon | 69726037 | 69726147 | 69726037 | ID=Msa0420920-mRNA-1:exon:16609;Parent=Msa0420920-mRNA-1 |
| chr3_2 | exon | 69726436 | 69726699 | 69726436 | ID=Msa0420920-mRNA-1:exon:16610;Parent=Msa0420920-mRNA-1 |
| chr3_2 | exon | 69729583 | 69730195 | 69729583 | ID=Msa0420920-mRNA-1:exon:16611;Parent=Msa0420920-mRNA-1 |
| chr3_2 | five_prime_UTR | 69726037 | 69726095 | 69726037 | ID=Msa0420920-mRNA-1:five_prime_utr;Parent=Msa0420920-mRNA-1 |
| chr3_2 | CDS | 69726096 | 69726147 | 69726096 | ID=Msa0420920-mRNA-1:cds;Parent=Msa0420920-mRNA-1 |
| chr3_2 | CDS | 69726436 | 69726699 | 69726436 | ID=Msa0420920-mRNA-1:cds;Parent=Msa0420920-mRNA-1 |
| chr3_2 | CDS | 69729583 | 69729938 | 69729583 | ID=Msa0420920-mRNA-1:cds;Parent=Msa0420920-mRNA-1 |
| chr3_2 | three_prime_UTR | 69729939 | 69730195 | 69729939 | ID=Msa0420920-mRNA-1:three_prime_utr;Parent=Msa0420920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
