AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646010 MtrunA17_Chr4g0034821 96.013 301 12 0 1 301 1 301 0.0 611
Msa0646010 MtrunA17_Chr3g0144451 68.000 275 77 1 27 301 22 285 7.93e-136 385
Msa0646010 MtrunA17_Chr3g0138231 70.683 249 71 1 55 301 28 276 1.14e-130 372
Msa0646010 MtrunA17_Chr3g0144421 46.909 275 143 2 19 291 29 302 4.13e-92 275
Msa0646010 MtrunA17_Chr3g0144391 46.460 226 118 1 66 291 283 505 1.19e-69 224
Msa0646010 MtrunA17_Chr4g0034451 43.096 239 131 3 55 291 291 526 7.39e-68 220
Msa0646010 MtrunA17_Chr3g0144411 44.690 226 122 1 66 291 316 538 9.46e-67 218
Msa0646010 MtrunA17_Chr4g0034731 43.478 230 125 4 64 291 206 432 2.12e-66 214
Msa0646010 MtrunA17_Chr4g0034721 46.119 219 113 4 75 291 361 576 4.68e-64 211
Msa0646010 MtrunA17_Chr4g0034691 43.836 219 118 3 75 291 493 708 1.86e-60 204
Msa0646010 MtrunA17_Chr1g0147271 41.850 227 127 4 67 292 163 385 1.29e-59 195
Msa0646010 MtrunA17_Chr3g0139431 43.668 229 121 5 67 292 99 322 1.16e-58 190
Msa0646010 MtrunA17_Chr1g0147301 41.667 228 127 5 67 292 62 285 1.01e-56 184
Msa0646010 MtrunA17_Chr6g0485051 44.019 209 111 4 87 292 1 206 7.41e-56 179
Msa0646010 MtrunA17_Chr1g0147291 40.529 227 127 5 67 292 48 267 4.00e-55 179
Msa0646010 MtrunA17_Chr1g0147321 40.179 224 126 5 67 289 19 235 2.68e-54 177
Msa0646010 MtrunA17_Chr1g0146631 41.410 227 126 4 67 292 105 325 3.59e-54 179
Msa0646010 MtrunA17_Chr1g0147311 41.071 224 126 5 71 292 137 356 1.44e-53 178
Msa0646010 MtrunA17_Chr1g0147331 40.969 227 127 4 67 292 105 325 2.69e-53 177
Msa0646010 MtrunA17_Chr1g0147241 39.823 226 130 4 67 292 94 313 1.26e-51 172
Msa0646010 MtrunA17_Chr1g0147261 38.739 222 130 4 71 292 85 300 1.87e-50 169
Msa0646010 MtrunA17_Chr1g0147251 37.826 230 130 5 63 292 27 243 2.48e-49 164
Msa0646010 MtrunA17_Chr8g0365361 33.484 221 132 7 75 289 181 392 1.24e-33 127
Msa0646010 MtrunA17_Chr8g0365381 33.032 221 133 7 75 289 429 640 5.18e-31 122
Msa0646010 MtrunA17_Chr8g0365401 33.333 222 133 7 75 290 412 624 1.00e-30 121
Msa0646010 MtrunA17_Chr5g0413591 32.301 226 130 7 75 290 415 627 4.21e-29 116
Msa0646010 MtrunA17_Chr3g0117791 31.416 226 132 7 75 290 413 625 5.99e-26 107
Msa0646010 MtrunA17_Chr4g0034051 50.633 79 37 2 215 291 1 79 6.58e-23 90.5
Msa0646010 MtrunA17_Chr4g0076231 30.573 157 104 3 135 289 3 156 3.62e-22 90.9
Msa0646010 MtrunA17_Chr8g0355311 34.868 152 89 5 144 295 53 194 1.60e-19 84.7
Msa0646010 MtrunA17_Chr8g0355861 33.987 153 91 4 144 296 123 265 3.79e-18 82.4
Msa0646010 MtrunA17_Chr5g0412991 28.959 221 144 6 74 289 196 408 3.99e-18 84.0
Msa0646010 MtrunA17_Chr5g0412991 27.586 174 107 5 112 273 18 184 7.83e-13 68.6
Msa0646010 MtrunA17_Chr5g0412981 28.959 221 144 6 74 289 196 408 4.10e-18 84.0
Msa0646010 MtrunA17_Chr5g0412981 27.586 174 107 5 112 273 18 184 1.41e-13 70.5
Msa0646010 MtrunA17_Chr8g0355871 35.811 148 85 6 144 291 85 222 5.82e-18 81.3
Msa0646010 MtrunA17_Chr2g0318901 34.028 144 85 6 150 293 128 261 1.11e-17 81.3
Msa0646010 MtrunA17_Chr2g0318871 29.730 222 120 9 75 293 73 261 1.16e-17 81.3
Msa0646010 MtrunA17_Chr8g0355321 34.043 141 83 5 151 291 172 302 8.41e-17 79.3
Msa0646010 MtrunA17_Chr5g0412951 27.368 190 119 5 112 289 25 207 8.43e-17 77.4
Msa0646010 MtrunA17_Chr8g0355331 34.043 141 83 5 151 291 291 421 1.62e-16 79.3
Msa0646010 MtrunA17_Chr8g0355841 34.483 145 85 6 151 295 379 513 1.39e-15 77.0
Msa0646010 MtrunA17_Chr1g0168781 31.126 151 89 5 144 291 121 259 1.64e-14 72.0
Msa0646010 MtrunA17_Chr8g0355831 33.784 148 88 5 144 291 214 351 7.26e-14 71.2
Msa0646010 MtrunA17_Chr8g0371951 38.095 84 47 3 200 280 6 87 1.63e-12 62.4
Msa0646010 MtrunA17_Chr2g0318931 30.345 145 89 6 151 293 138 272 9.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646010 AT1G49320.1 45.415 229 120 2 69 292 52 280 2.75e-68 214
Msa0646010 AT5G25610.1 40.000 225 130 4 67 289 168 389 6.43e-51 172
Msa0646010 AT1G70370.2 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0646010 AT1G70370.1 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0646010 AT1G23760.1 32.353 204 120 5 92 290 429 619 6.45e-28 113
Msa0646010 AT1G60390.1 30.222 225 134 7 75 289 409 620 3.73e-26 108

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCCTGAACTTCCAATTT+TGG 0.159002 4_3:-51540485 None:intergenic
TTTCATATGGGTTCCAAAAT+TGG 0.163908 4_3:+51540472 Msa0646010:CDS
CATGTTTCATTTCAGGTTCT+TGG 0.168453 4_3:+51540401 Msa0646010:CDS
ACATGGTCATGTTTCATTTC+AGG 0.187970 4_3:+51540394 Msa0646010:CDS
GGAAGTTTGTTCAAAGAAAA+AGG 0.203933 4_3:-51539948 None:intergenic
GATTTCACTCAAACCATTCT+TGG 0.227601 4_3:+51540107 Msa0646010:CDS
GTTTCACTTGTTGGTGATAA+TGG 0.231201 4_3:+51540320 Msa0646010:CDS
TATTCTCACTTTCTTGACTA+TGG 0.275068 4_3:-51540286 None:intergenic
CTTCAATTTCCCCTAAGTTT+TGG 0.302168 4_3:+51539901 Msa0646010:CDS
GAATTTCACTTCTCCTTTGA+TGG 0.307340 4_3:-51540057 None:intergenic
GGAAATTGAAGGGTCTCTTT+TGG 0.307777 4_3:-51539889 None:intergenic
TTTCACTTGTTGGTGATAAT+GGG 0.318089 4_3:+51540321 Msa0646010:CDS
CTGAAAAGTGACACTTGATT+TGG 0.319135 4_3:-51540171 None:intergenic
TGTTGGTGATAATGGGGATT+TGG 0.320872 4_3:+51540328 Msa0646010:CDS
TGATATGATCATGTAGATTT+AGG 0.322595 4_3:+51539417 Msa0646010:five_prime_UTR
GGTTCCAAAATTGGAAGTTC+AGG 0.332466 4_3:+51540481 Msa0646010:CDS
CTTTGGCTTGTGGAGAGTCT+TGG 0.342138 4_3:-51539998 None:intergenic
TTCCAGCTGATAATTTCATA+TGG 0.349895 4_3:+51540459 Msa0646010:CDS
GTGTGACATGCCACCATCTT+TGG 0.354478 4_3:-51540233 None:intergenic
TCATATGGATACTTCTCATT+GGG 0.365983 4_3:+51540370 Msa0646010:CDS
TTGTCTCTTGGCCAAAACTT+AGG 0.371649 4_3:-51539912 None:intergenic
TAAATCTACATGATCATATC+AGG 0.372629 4_3:-51539415 None:intergenic
AAGGGTATCTACCATTGCTT+TGG 0.378961 4_3:-51540015 None:intergenic
TGTCTCTTGGCCAAAACTTA+GGG 0.382523 4_3:-51539911 None:intergenic
CAGGTTCTTGGTGTTGTGCC+AGG 0.389898 4_3:+51540413 Msa0646010:CDS
ATTTATTGAGAATAATGTAT+TGG 0.396779 4_3:+51540659 Msa0646010:three_prime_UTR
TTTGGCTTGTGGAGAGTCTT+GGG 0.402514 4_3:-51539997 None:intergenic
TCTACCATTGCTTTGGCTTG+TGG 0.404591 4_3:-51540008 None:intergenic
TGGCAATAGAAAACAGCATA+AGG 0.408624 4_3:-51540266 None:intergenic
ATATATAGAGTTTCACTTGT+TGG 0.415560 4_3:+51540311 Msa0646010:CDS
AATTTCACTTCTCCTTTGAT+GGG 0.416780 4_3:-51540056 None:intergenic
GTCATATGGATACTTCTCAT+TGG 0.421442 4_3:+51540369 Msa0646010:CDS
ACCTTGAAAGACTTAAAAGT+TGG 0.422790 4_3:+51539843 Msa0646010:CDS
AGTGAATCAGCTTTGTCTCT+TGG 0.424727 4_3:-51539924 None:intergenic
TCACATGGACCCTTCTGTTA+TGG 0.432901 4_3:+51539812 Msa0646010:CDS
AGCTATGGTTGTTTGTCATA+TGG 0.433565 4_3:+51540355 Msa0646010:CDS
GTTTGCTCTCACATTCTGTA+AGG 0.443520 4_3:-51540034 None:intergenic
AGGATCTCAGATATAAACTT+TGG 0.448641 4_3:-51539504 None:intergenic
TGGGGATTTGGTGGAAGCTA+TGG 0.459502 4_3:+51540340 Msa0646010:CDS
TCCAGCTGATAATTTCATAT+GGG 0.459838 4_3:+51540460 Msa0646010:CDS
TGACACACATTAGAACTTCC+TGG 0.463418 4_3:-51540431 None:intergenic
CCTTGAAAGACTTAAAAGTT+GGG 0.465337 4_3:+51539844 Msa0646010:CDS
TGGTGATAATGGGGATTTGG+TGG 0.472374 4_3:+51540331 Msa0646010:CDS
TGTTGAAATAAGTACTCTCC+TGG 0.484120 4_3:+51540585 Msa0646010:three_prime_UTR
CTATATTAGACAAGATTATG+AGG 0.485497 4_3:+51540201 Msa0646010:CDS
TGGAACAGAAAGCAAACTCT+TGG 0.493149 4_3:+51539719 Msa0646010:CDS
CAAAACTTAGGGGAAATTGA+AGG 0.500601 4_3:-51539900 None:intergenic
GGCAATAGAAAACAGCATAA+GGG 0.512658 4_3:-51540265 None:intergenic
ATAGTCAAGAAAGTGAGAAT+AGG 0.513839 4_3:+51540288 Msa0646010:CDS
GTTCCAAAATTGGAAGTTCA+GGG 0.515552 4_3:+51540482 Msa0646010:CDS
ACCCATATGAAATTATCAGC+TGG 0.518839 4_3:-51540461 None:intergenic
GAGGATTTCAGCTCCAAAGA+TGG 0.529926 4_3:+51540220 Msa0646010:CDS
TAGAAAACAGCATAAGGGTA+AGG 0.533811 4_3:-51540260 None:intergenic
TTTGCTCTCACATTCTGTAA+GGG 0.540182 4_3:-51540033 None:intergenic
TTCACTTGTTGGTGATAATG+GGG 0.549004 4_3:+51540322 Msa0646010:CDS
GATACTTCTCATTGGGGACA+TGG 0.551200 4_3:+51540377 Msa0646010:CDS
AGCAGAGCAAGAGAATTAGC+TGG 0.551256 4_3:+51539699 Msa0646010:CDS
GTACTAGTAGATGAAGAAAG+AGG 0.558137 4_3:-51539524 None:intergenic
AGAAACTCAAACATCAAACT+TGG 0.558625 4_3:-51540555 None:intergenic
GTCTCTTGGCCAAAACTTAG+GGG 0.574379 4_3:-51539910 None:intergenic
GTGAAGAACACCATAACAGA+AGG 0.585539 4_3:-51539822 None:intergenic
TGTGAGAGCAAACCCATCAA+AGG 0.590120 4_3:+51540044 Msa0646010:CDS
CTCTCCACAAGCCAAAGCAA+TGG 0.615953 4_3:+51540004 Msa0646010:CDS
AAAACTTAGGGGAAATTGAA+GGG 0.620878 4_3:-51539899 None:intergenic
ATCTCTGTCTTTCTACACAA+AGG 0.629482 4_3:+51539441 Msa0646010:five_prime_UTR
CATATGGATACTTCTCATTG+GGG 0.635326 4_3:+51540371 Msa0646010:CDS
GTTGAAATAAGTACTCTCCT+GGG 0.635439 4_3:+51540586 Msa0646010:three_prime_UTR
TGCACATAATCACAATCACA+TGG 0.646984 4_3:+51539797 Msa0646010:CDS
GATTTCAGCTCCAAAGATGG+TGG 0.658692 4_3:+51540223 Msa0646010:CDS
TGAAGAACACCATAACAGAA+GGG 0.675219 4_3:-51539821 None:intergenic
TCATCTACTAGTACTAATCA+CGG 0.682328 4_3:+51539533 Msa0646010:CDS
TAGCATCATTACATGTACCC+AGG 0.694629 4_3:-51540603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAGTATTAAAAAAA+TGG + chr4_3:51540701-51540720 Msa0646010:three_prime_UTR 10.0%
!!! GTTTTATAGTATTAAAAAAA+TGG + chr4_3:51540701-51540720 Msa0646010:three_prime_UTR 10.0%
!!! TTTCTTTTAGCATATAATAT+TGG - chr4_3:51539384-51539403 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG + chr4_3:51539599-51539618 Msa0646010:intron 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG + chr4_3:51539675-51539694 Msa0646010:intron 15.0%
!! ATTTATTGAGAATAATGTAT+TGG + chr4_3:51540659-51540678 Msa0646010:three_prime_UTR 15.0%
!! TTGTATCATAAAGATAAAAT+GGG + chr4_3:51540744-51540763 Msa0646010:three_prime_UTR 15.0%
!!! TTTCTTTTAGCATATAATAT+TGG - chr4_3:51539384-51539403 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG + chr4_3:51539599-51539618 Msa0646010:intron 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG + chr4_3:51539675-51539694 Msa0646010:intron 15.0%
!! ATTTATTGAGAATAATGTAT+TGG + chr4_3:51540659-51540678 Msa0646010:three_prime_UTR 15.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG + chr4_3:51539573-51539592 Msa0646010:intron 20.0%
!! CTTGTATCATAAAGATAAAA+TGG + chr4_3:51540743-51540762 Msa0646010:three_prime_UTR 20.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG + chr4_3:51539573-51539592 Msa0646010:intron 20.0%
! TAAATCTACATGATCATATC+AGG - chr4_3:51539418-51539437 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG + chr4_3:51539417-51539436 Msa0646010:five_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG - chr4_3:51540123-51540142 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG + chr4_3:51540201-51540220 Msa0646010:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG + chr4_3:51540311-51540330 Msa0646010:CDS 25.0%
! TAAATCTACATGATCATATC+AGG - chr4_3:51539418-51539437 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG + chr4_3:51539417-51539436 Msa0646010:five_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG - chr4_3:51540123-51540142 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG + chr4_3:51540201-51540220 Msa0646010:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG + chr4_3:51540311-51540330 Msa0646010:CDS 25.0%
AGGATCTCAGATATAAACTT+TGG - chr4_3:51539507-51539526 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG + chr4_3:51539533-51539552 Msa0646010:CDS 30.0%
AGAAATAGAGTTCCAAGAAA+AGG - chr4_3:51539588-51539607 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG + chr4_3:51539843-51539862 Msa0646010:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG + chr4_3:51539844-51539863 Msa0646010:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG - chr4_3:51539902-51539921 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG - chr4_3:51539951-51539970 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG - chr4_3:51540059-51540078 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG - chr4_3:51540289-51540308 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG + chr4_3:51540288-51540307 Msa0646010:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG + chr4_3:51540321-51540340 Msa0646010:CDS 30.0%
TCATATGGATACTTCTCATT+GGG + chr4_3:51540370-51540389 Msa0646010:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG + chr4_3:51540459-51540478 Msa0646010:CDS 30.0%
TCCAGCTGATAATTTCATAT+GGG + chr4_3:51540460-51540479 Msa0646010:CDS 30.0%
TTTCATATGGGTTCCAAAAT+TGG + chr4_3:51540472-51540491 Msa0646010:CDS 30.0%
AGAAACTCAAACATCAAACT+TGG - chr4_3:51540558-51540577 None:intergenic 30.0%
AGGATCTCAGATATAAACTT+TGG - chr4_3:51539507-51539526 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG + chr4_3:51539533-51539552 Msa0646010:CDS 30.0%
AGAAATAGAGTTCCAAGAAA+AGG - chr4_3:51539588-51539607 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG + chr4_3:51539843-51539862 Msa0646010:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG + chr4_3:51539844-51539863 Msa0646010:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG - chr4_3:51539902-51539921 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG - chr4_3:51539951-51539970 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG - chr4_3:51540059-51540078 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG - chr4_3:51540289-51540308 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG + chr4_3:51540288-51540307 Msa0646010:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG + chr4_3:51540321-51540340 Msa0646010:CDS 30.0%
TCATATGGATACTTCTCATT+GGG + chr4_3:51540370-51540389 Msa0646010:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG + chr4_3:51540459-51540478 Msa0646010:CDS 30.0%
TCCAGCTGATAATTTCATAT+GGG + chr4_3:51540460-51540479 Msa0646010:CDS 30.0%
TTTCATATGGGTTCCAAAAT+TGG + chr4_3:51540472-51540491 Msa0646010:CDS 30.0%
AGAAACTCAAACATCAAACT+TGG - chr4_3:51540558-51540577 None:intergenic 30.0%
ATCTCTGTCTTTCTACACAA+AGG + chr4_3:51539441-51539460 Msa0646010:five_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG - chr4_3:51539527-51539546 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG - chr4_3:51539652-51539671 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG + chr4_3:51539797-51539816 Msa0646010:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG - chr4_3:51539824-51539843 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG - chr4_3:51539847-51539866 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG - chr4_3:51539891-51539910 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG - chr4_3:51539903-51539922 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG + chr4_3:51539901-51539920 Msa0646010:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG - chr4_3:51539972-51539991 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG - chr4_3:51540036-51540055 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG - chr4_3:51540060-51540079 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG + chr4_3:51540107-51540126 Msa0646010:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG - chr4_3:51540174-51540193 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG - chr4_3:51540263-51540282 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG - chr4_3:51540268-51540287 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG - chr4_3:51540269-51540288 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG + chr4_3:51540320-51540339 Msa0646010:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG + chr4_3:51540322-51540341 Msa0646010:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG + chr4_3:51540355-51540374 Msa0646010:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG + chr4_3:51540369-51540388 Msa0646010:CDS 35.0%
CATATGGATACTTCTCATTG+GGG + chr4_3:51540371-51540390 Msa0646010:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG + chr4_3:51540394-51540413 Msa0646010:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG + chr4_3:51540401-51540420 Msa0646010:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG - chr4_3:51540464-51540483 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG + chr4_3:51540482-51540501 Msa0646010:CDS 35.0%
TGTTGAAATAAGTACTCTCC+TGG + chr4_3:51540585-51540604 Msa0646010:three_prime_UTR 35.0%
GTTGAAATAAGTACTCTCCT+GGG + chr4_3:51540586-51540605 Msa0646010:three_prime_UTR 35.0%
ATCTCTGTCTTTCTACACAA+AGG + chr4_3:51539441-51539460 Msa0646010:five_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG - chr4_3:51539527-51539546 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG - chr4_3:51539652-51539671 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG + chr4_3:51539797-51539816 Msa0646010:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG - chr4_3:51539824-51539843 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG - chr4_3:51539847-51539866 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG - chr4_3:51539891-51539910 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG - chr4_3:51539903-51539922 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG + chr4_3:51539901-51539920 Msa0646010:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG - chr4_3:51539972-51539991 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG - chr4_3:51540036-51540055 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG - chr4_3:51540060-51540079 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG + chr4_3:51540107-51540126 Msa0646010:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG - chr4_3:51540174-51540193 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG - chr4_3:51540263-51540282 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG - chr4_3:51540268-51540287 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG - chr4_3:51540269-51540288 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG + chr4_3:51540320-51540339 Msa0646010:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG + chr4_3:51540322-51540341 Msa0646010:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG + chr4_3:51540355-51540374 Msa0646010:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG + chr4_3:51540369-51540388 Msa0646010:CDS 35.0%
CATATGGATACTTCTCATTG+GGG + chr4_3:51540371-51540390 Msa0646010:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG + chr4_3:51540394-51540413 Msa0646010:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG + chr4_3:51540401-51540420 Msa0646010:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG - chr4_3:51540464-51540483 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG + chr4_3:51540482-51540501 Msa0646010:CDS 35.0%
TGTTGAAATAAGTACTCTCC+TGG + chr4_3:51540585-51540604 Msa0646010:three_prime_UTR 35.0%
GTTGAAATAAGTACTCTCCT+GGG + chr4_3:51540586-51540605 Msa0646010:three_prime_UTR 35.0%
TGGAACAGAAAGCAAACTCT+TGG + chr4_3:51539719-51539738 Msa0646010:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG - chr4_3:51539825-51539844 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG - chr4_3:51539892-51539911 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG - chr4_3:51539914-51539933 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG - chr4_3:51539915-51539934 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG - chr4_3:51539927-51539946 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG - chr4_3:51540018-51540037 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG - chr4_3:51540037-51540056 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG + chr4_3:51540328-51540347 Msa0646010:CDS 40.0%
TGACACACATTAGAACTTCC+TGG - chr4_3:51540434-51540453 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG + chr4_3:51540481-51540500 Msa0646010:CDS 40.0%
! ACACCCTGAACTTCCAATTT+TGG - chr4_3:51540488-51540507 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG - chr4_3:51540606-51540625 None:intergenic 40.0%
TGGAACAGAAAGCAAACTCT+TGG + chr4_3:51539719-51539738 Msa0646010:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG - chr4_3:51539825-51539844 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG - chr4_3:51539892-51539911 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG - chr4_3:51539914-51539933 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG - chr4_3:51539915-51539934 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG - chr4_3:51539927-51539946 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG - chr4_3:51540018-51540037 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG - chr4_3:51540037-51540056 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG + chr4_3:51540328-51540347 Msa0646010:CDS 40.0%
TGACACACATTAGAACTTCC+TGG - chr4_3:51540434-51540453 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG + chr4_3:51540481-51540500 Msa0646010:CDS 40.0%
! ACACCCTGAACTTCCAATTT+TGG - chr4_3:51540488-51540507 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG - chr4_3:51540606-51540625 None:intergenic 40.0%
AGCAGAGCAAGAGAATTAGC+TGG + chr4_3:51539699-51539718 Msa0646010:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG + chr4_3:51539812-51539831 Msa0646010:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG - chr4_3:51539913-51539932 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG - chr4_3:51540000-51540019 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG - chr4_3:51540011-51540030 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG + chr4_3:51540044-51540063 Msa0646010:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG + chr4_3:51540220-51540239 Msa0646010:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG + chr4_3:51540223-51540242 Msa0646010:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG + chr4_3:51540331-51540350 Msa0646010:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG + chr4_3:51540377-51540396 Msa0646010:CDS 45.0%
AGCAGAGCAAGAGAATTAGC+TGG + chr4_3:51539699-51539718 Msa0646010:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG + chr4_3:51539812-51539831 Msa0646010:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG - chr4_3:51539913-51539932 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG - chr4_3:51540000-51540019 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG - chr4_3:51540011-51540030 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG + chr4_3:51540044-51540063 Msa0646010:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG + chr4_3:51540220-51540239 Msa0646010:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG + chr4_3:51540223-51540242 Msa0646010:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG + chr4_3:51540331-51540350 Msa0646010:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG + chr4_3:51540377-51540396 Msa0646010:CDS 45.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG - chr4_3:51540001-51540020 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG + chr4_3:51540004-51540023 Msa0646010:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG - chr4_3:51540236-51540255 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG + chr4_3:51540340-51540359 Msa0646010:CDS 50.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG - chr4_3:51540001-51540020 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG + chr4_3:51540004-51540023 Msa0646010:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG - chr4_3:51540236-51540255 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG + chr4_3:51540340-51540359 Msa0646010:CDS 50.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG + chr4_3:51540413-51540432 Msa0646010:CDS 55.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG + chr4_3:51540413-51540432 Msa0646010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51539374 51540763 51539374 ID=Msa0646010;Name=Msa0646010
chr4_3 mRNA 51539374 51540763 51539374 ID=Msa0646010-mRNA-1;Parent=Msa0646010;Name=Msa0646010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109|1|1|1|1|1|2|243|301
chr4_3 exon 51539374 51539554 51539374 ID=Msa0646010-mRNA-1:exon:12508;Parent=Msa0646010-mRNA-1
chr4_3 exon 51539687 51540763 51539687 ID=Msa0646010-mRNA-1:exon:12509;Parent=Msa0646010-mRNA-1
chr4_3 five_prime_UTR 51539374 51539482 51539374 ID=Msa0646010-mRNA-1:five_prime_utr;Parent=Msa0646010-mRNA-1
chr4_3 CDS 51539483 51539554 51539483 ID=Msa0646010-mRNA-1:cds;Parent=Msa0646010-mRNA-1
chr4_3 CDS 51539687 51540520 51539687 ID=Msa0646010-mRNA-1:cds;Parent=Msa0646010-mRNA-1
chr4_3 three_prime_UTR 51540521 51540763 51540521 ID=Msa0646010-mRNA-1:three_prime_utr;Parent=Msa0646010-mRNA-1
Gene Sequence

>Msa0646010

ATGCTAAGCAGAAACATGAGTCCAAAGTTTATATCTGAGATCCTCTTTCTTCATCTACTAGTACTAATCACGATTTTTTATGGAAGCAGAGCAAGAGAATTAGCTGGAACAGAAAGCAAACTCTTGGATATTGCACTGAACAAAACTGCTACTAATGAACATCAAACAGAACACAAACATCATGCACATAATCACAATCACATGGACCCTTCTGTTATGGTGTTCTTCACCTTGAAAGACTTAAAAGTTGGGAAAAGAATGCAAATTAATTTTCCCAAAAGAGACCCTTCAATTTCCCCTAAGTTTTGGCCAAGAGACAAAGCTGATTCACTTCCTTTTTCTTTGAACAAACTTCCAACTCTTCTCAAAATCTTCTCTTTATCCCAAGACTCTCCACAAGCCAAAGCAATGGTAGATACCCTTACAGAATGTGAGAGCAAACCCATCAAAGGAGAAGTGAAATTCTGCGCGACTTCTTTAGAATCTATGCTTGATTTCACTCAAACCATTCTTGGTTTTTCAAATGATCTTCAAGTTTATGCAACTTCACATTTAACCAAATCAAGTGTCACTTTTCAGAACTATACTATATTAGACAAGATTATGAGGATTTCAGCTCCAAAGATGGTGGCATGTCACACTATGCCTTACCCTTATGCTGTTTTCTATTGCCATAGTCAAGAAAGTGAGAATAGGATATATAGAGTTTCACTTGTTGGTGATAATGGGGATTTGGTGGAAGCTATGGTTGTTTGTCATATGGATACTTCTCATTGGGGACATGGTCATGTTTCATTTCAGGTTCTTGGTGTTGTGCCAGGAAGTTCTAATGTGTGTCACTTTTTTCCAGCTGATAATTTCATATGGGTTCCAAAATTGGAAGTTCAGGGTGTTTCAGACATGTGA

Protein sequence

>Msa0646010

MLSRNMSPKFISEILFLHLLVLITIFYGSRARELAGTESKLLDIALNKTATNEHQTEHKHHAHNHNHMDPSVMVFFTLKDLKVGKRMQINFPKRDPSISPKFWPRDKADSLPFSLNKLPTLLKIFSLSQDSPQAKAMVDTLTECESKPIKGEVKFCATSLESMLDFTQTILGFSNDLQVYATSHLTKSSVTFQNYTILDKIMRISAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLVGDNGDLVEAMVVCHMDTSHWGHGHVSFQVLGVVPGSSNVCHFFPADNFIWVPKLEVQGVSDM*