AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404140 MtrunA17_Chr3g0132471 95.107 327 9 2 1 326 1 321 0.0 641
Msa0404140 MtrunA17_Chr5g0426851 55.319 329 108 9 1 322 1 297 1.41e-107 315
Msa0404140 MtrunA17_Chr7g0273081 51.090 321 131 6 1 320 14 309 4.34e-96 287
Msa0404140 MtrunA17_Chr1g0191571 51.205 332 138 7 1 320 14 333 3.47e-94 283
Msa0404140 MtrunA17_Chr8g0366551 56.944 216 75 3 111 320 113 316 1.26e-79 245
Msa0404140 MtrunA17_Chr8g0345871 50.481 208 86 3 111 317 170 361 1.35e-57 190
Msa0404140 MtrunA17_Chr0c01g0489461 46.667 225 96 5 103 314 176 389 8.40e-57 189
Msa0404140 MtrunA17_Chr2g0287761 40.415 193 103 4 122 312 1 183 4.54e-39 136
Msa0404140 MtrunA17_Chr1g0158941 36.290 248 127 6 85 312 54 290 1.36e-36 133
Msa0404140 MtrunA17_Chr3g0126381 28.141 199 104 6 151 312 1 197 1.72e-15 73.9
Msa0404140 MtrunA17_Chr3g0126361 57.143 56 20 1 102 153 77 132 1.31e-12 64.7
Msa0404140 MtrunA17_Chr8g0366751 26.531 196 121 5 102 292 445 622 9.94e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404140 AT1G72210.1 49.708 342 130 10 1 323 1 319 4.98e-91 275
Msa0404140 AT1G22490.1 45.946 333 137 9 1 320 1 303 9.80e-86 260
Msa0404140 AT1G72210.2 48.562 313 119 10 1 294 1 290 8.06e-76 235
Msa0404140 AT1G22490.2 44.051 311 131 9 1 298 1 281 1.42e-70 223
Msa0404140 AT4G01460.1 41.121 214 119 1 110 323 103 309 9.99e-52 173
Msa0404140 AT4G01460.2 41.121 214 119 1 110 323 103 309 9.99e-52 173
Msa0404140 AT3G24140.2 44.196 224 109 4 101 314 176 393 1.89e-51 175
Msa0404140 AT3G24140.1 44.196 224 109 4 101 314 176 393 2.72e-51 175
Msa0404140 AT5G65320.1 47.317 205 99 4 118 320 98 295 1.36e-50 170
Msa0404140 AT2G46810.2 44.660 206 90 4 113 314 112 297 3.18e-50 169
Msa0404140 AT2G46810.1 44.660 206 90 4 113 314 184 369 9.54e-50 170
Msa0404140 AT2G46810.3 44.660 206 90 4 113 314 172 357 1.11e-49 169
Msa0404140 AT5G46690.1 44.033 243 86 7 111 320 77 302 5.10e-49 167
Msa0404140 AT5G65320.2 47.849 186 89 3 110 294 90 268 5.67e-46 157
Msa0404140 AT3G61950.2 43.902 205 96 3 111 314 116 302 5.84e-46 158
Msa0404140 AT3G61950.1 43.902 205 96 3 111 314 167 353 9.13e-46 159
Msa0404140 AT2G46810.4 39.744 234 89 5 113 314 112 325 1.14e-44 155
Msa0404140 AT3G61950.6 45.029 171 76 2 111 281 116 268 1.20e-41 147
Msa0404140 AT3G61950.3 45.029 171 76 2 111 281 167 319 1.86e-41 147
Msa0404140 AT5G46690.2 43.318 217 73 7 111 294 77 276 1.07e-38 139
Msa0404140 AT3G06120.1 35.714 196 115 4 122 312 1 190 1.31e-31 117
Msa0404140 AT5G53210.2 66.154 65 22 0 120 184 100 164 4.78e-23 98.2
Msa0404140 AT5G53210.1 66.154 65 22 0 120 184 100 164 4.83e-23 98.6
Msa0404140 AT3G61950.4 69.767 43 13 0 111 153 167 209 9.78e-14 69.7
Msa0404140 AT3G61950.5 69.767 43 13 0 111 153 167 209 9.78e-14 69.7
Msa0404140 AT5G46760.1 24.800 250 138 9 70 310 376 584 9.34e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCCATTGTTTGTGTTCT+TGG 0.102767 3_2:+34864663 None:intergenic
AGAACAACATTTACAGTCTA+TGG 0.205160 3_2:-34864834 Msa0404140:CDS
TGATCAACGGTGCAGATTTC+AGG 0.214308 3_2:+34865899 None:intergenic
TTCTCCATCGTTAAGTGATT+TGG 0.220241 3_2:-34864159 Msa0404140:three_prime_UTR
GGTGACCAAGCTTCTATTAT+TGG 0.242168 3_2:-34864884 Msa0404140:CDS
TTGTTGGGTTACAAAATCTT+AGG 0.275677 3_2:-34864553 Msa0404140:CDS
AACAAAATCTCCATGCAAAC+TGG 0.290252 3_2:-34865973 Msa0404140:CDS
TGTTACCACGGTCGATGATA+TGG 0.322275 3_2:-34864510 Msa0404140:CDS
CTGCTGTGAATCAACTATTA+AGG 0.338632 3_2:-34864290 Msa0404140:CDS
CTAGTTGAAATGTGTTAATT+AGG 0.354436 3_2:-34864012 Msa0404140:three_prime_UTR
TTTAAGCCTATGTTCTCGTT+TGG 0.392393 3_2:+34864788 None:intergenic
TGCCTTCTTCTTATGTTCAA+AGG 0.395209 3_2:-34865685 Msa0404140:CDS
GTTGATAAGCCAGTTCTTGT+TGG 0.407779 3_2:+34864262 None:intergenic
GTGTTTATTGAGAATATTAG+AGG 0.408257 3_2:-34864120 Msa0404140:three_prime_UTR
GTTCTGTTAAAGATCATCAA+TGG 0.410588 3_2:-34865943 Msa0404140:CDS
CTTTGATCAAGCAGACCTAT+TGG 0.418017 3_2:+34863918 None:intergenic
GAGAACATAGGCTTAAATAA+TGG 0.421439 3_2:-34864782 Msa0404140:CDS
AACTTATGAAGATTGTTGTT+GGG 0.423130 3_2:-34864568 Msa0404140:CDS
GCCTTCTTCTTATGTTCAAA+GGG 0.428871 3_2:-34865684 Msa0404140:intron
TTCAATAATAAGCTACCAAT+AGG 0.438365 3_2:-34863933 Msa0404140:three_prime_UTR
CAACTTATGAAGATTGTTGT+TGG 0.446451 3_2:-34864569 Msa0404140:CDS
TTCTGTTAAAGATCATCAAT+GGG 0.457250 3_2:-34865942 Msa0404140:CDS
TGCAGTTGCTGTTGCTTCCA+CGG 0.462288 3_2:+34865847 None:intergenic
GTTCATTGTTGATGATTCCT+AGG 0.463558 3_2:+34865996 None:intergenic
GAACAACATTTACAGTCTAT+GGG 0.463577 3_2:-34864833 Msa0404140:CDS
TGATTGGAGCAGGTAGAGGA+GGG 0.476683 3_2:-34864345 Msa0404140:intron
ATGAGTACTTGAATGTTCTT+CGG 0.477520 3_2:-34865715 Msa0404140:CDS
ACAATCTTCATAAGTTGTCC+TGG 0.483622 3_2:+34864575 None:intergenic
AAGGACGGTCCAACAAGAAC+TGG 0.486926 3_2:-34864271 Msa0404140:CDS
TTGATTGGAGCAGGTAGAGG+AGG 0.489389 3_2:-34864346 Msa0404140:intron
CTCCTCCAATAATAGAAGCT+TGG 0.501188 3_2:+34864879 None:intergenic
AACAAGAATCCCAGTTTGCA+TGG 0.514438 3_2:+34865963 None:intergenic
AAAGTGAAGAATTCAGCAAA+AGG 0.515194 3_2:+34864755 None:intergenic
GGTAACATTAAGATGAAGAA+TGG 0.520032 3_2:+34864526 None:intergenic
GTTGCTTCCACGGTGGAAGA+AGG 0.520106 3_2:+34865857 None:intergenic
GACCAAGCTTCTATTATTGG+AGG 0.520738 3_2:-34864881 Msa0404140:CDS
AAGAGGAGATTGAAAATCAA+AGG 0.536216 3_2:-34865781 Msa0404140:CDS
ACCTGTGAGGTTCATACTGT+TGG 0.537508 3_2:+34863977 None:intergenic
GAACAAGAGAATGTTCTCCT+AGG 0.539799 3_2:-34866013 Msa0404140:CDS
TTACCAAGAACACAAACAAT+GGG 0.539923 3_2:-34864666 Msa0404140:CDS
CTAATTAACACATTTCAACT+AGG 0.541454 3_2:+34864013 None:intergenic
TCTTCTGATAGCAGCAATTG+TGG 0.542739 3_2:-34864051 Msa0404140:three_prime_UTR
TCCTTGTAACTATATGTGAA+TGG 0.548758 3_2:+34866085 None:intergenic
ACCCTTTGAACATAAGAAGA+AGG 0.558671 3_2:+34865683 None:intergenic
TCTTTACTCAGTTAGTGTCA+AGG 0.560473 3_2:-34864486 Msa0404140:intron
GATTGGAGCAGGTAGAGGAG+GGG 0.565920 3_2:-34864344 Msa0404140:intron
ATTACCAAGAACACAAACAA+TGG 0.566449 3_2:-34864667 Msa0404140:CDS
AATAATGGCTCTTGAAACTG+TGG 0.572614 3_2:-34866125 None:intergenic
AAATCACTTAACGATGGAGA+AGG 0.575886 3_2:+34864161 None:intergenic
ATGTGAATGGATCTTGTTGT+GGG 0.578863 3_2:+34866098 None:intergenic
TGTTTATTGAGAATATTAGA+GGG 0.581559 3_2:-34864119 Msa0404140:three_prime_UTR
ACAAAATCTCCATGCAAACT+GGG 0.583052 3_2:-34865972 Msa0404140:CDS
CACCGTTGATCAAACTATCA+CGG 0.598610 3_2:-34865888 Msa0404140:CDS
AGGAGCAATAAACTTTGTGA+AGG 0.602345 3_2:-34864861 Msa0404140:CDS
CAACAACAACAACGTCACAA+TGG 0.603557 3_2:-34864699 Msa0404140:CDS
CAAGAGTGCAAAGAACAAAG+AGG 0.609385 3_2:-34865798 Msa0404140:CDS
ACCAACAGTATGAACCTCAC+AGG 0.609690 3_2:-34863978 Msa0404140:three_prime_UTR
AAAGAACCAAACGAGAACAT+AGG 0.609692 3_2:-34864794 Msa0404140:CDS
AACGGTGCAGATTTCAGGAG+AGG 0.610812 3_2:+34865904 None:intergenic
GGGGAGTCAGCTGAATAGTG+TGG 0.613845 3_2:-34864325 Msa0404140:CDS
TCCACGGTGGAAGAAGGAGG+AGG 0.617851 3_2:+34865863 None:intergenic
TCCATTCACATATAGTTACA+AGG 0.620151 3_2:-34866086 Msa0404140:CDS
TCTTCATCTTAATGTTACCA+CGG 0.620808 3_2:-34864522 Msa0404140:CDS
TTTATTGAGAATATTAGAGG+GGG 0.621085 3_2:-34864117 Msa0404140:three_prime_UTR
AACAACATTTACAGTCTATG+GGG 0.630582 3_2:-34864832 Msa0404140:CDS
CAACAGCAACTGCAACGTGT+AGG 0.632313 3_2:-34865838 Msa0404140:CDS
GCTTCCACGGTGGAAGAAGG+AGG 0.636333 3_2:+34865860 None:intergenic
AGCCGTGATAGTTTGATCAA+CGG 0.636568 3_2:+34865886 None:intergenic
GTTTATTGAGAATATTAGAG+GGG 0.638772 3_2:-34864118 Msa0404140:three_prime_UTR
GGCAGACATTGAAGTTACAA+TGG 0.641899 3_2:-34864639 Msa0404140:CDS
GTGAAGAATTCAGCAAAAGG+TGG 0.646381 3_2:+34864758 None:intergenic
AGAACACAAACAATGGGCTG+TGG 0.648246 3_2:-34864660 Msa0404140:CDS
ATATCCAAATCACTTAACGA+TGG 0.651147 3_2:+34864155 None:intergenic
TATGTGAATGGATCTTGTTG+TGG 0.651367 3_2:+34866097 None:intergenic
ACAACATTTACAGTCTATGG+GGG 0.663491 3_2:-34864831 Msa0404140:CDS
GAATAGTGTGGATGAAATTG+CGG 0.673702 3_2:-34864313 Msa0404140:CDS
TGTGAATCAACTATTAAGGA+CGG 0.674482 3_2:-34864286 Msa0404140:CDS
TGACTATGATCATCTTCATG+CGG 0.681857 3_2:-34866038 Msa0404140:CDS
GTTGCACTTGTTGTGTACTG+AGG 0.689048 3_2:+34864731 None:intergenic
TCCTCCTCCTTCTTCCACCG+TGG 0.691097 3_2:-34865864 Msa0404140:CDS
AAGAACCATATCATCGACCG+TGG 0.707791 3_2:+34864505 None:intergenic
CAACATTTACAGTCTATGGG+GGG 0.730568 3_2:-34864830 Msa0404140:CDS
GTAATTCACATAGACCTGTG+AGG 0.732658 3_2:+34863964 None:intergenic
AGTTGCTGTTGCTTCCACGG+TGG 0.802421 3_2:+34865850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTAAAAATTAAA+TGG + chr3_2:34865629-34865648 None:intergenic 0.0%
!!! ATTTTTTTTTAAAAATTAAA+TGG + chr3_2:34865629-34865648 None:intergenic 0.0%
!! AAATATAATTAGAAAGTTAA+CGG + chr3_2:34864548-34864567 None:intergenic 10.0%
!! TATTTGCATATTTATTTATA+TGG - chr3_2:34864843-34864862 Msa0404140:CDS 10.0%
!!! TTAAAATTATTTATTTCTGT+TGG - chr3_2:34865600-34865619 Msa0404140:intron 10.0%
!!! TTAATTAATTTATGAGTTTT+GGG - chr3_2:34865674-34865693 Msa0404140:intron 10.0%
!! AAATATAATTAGAAAGTTAA+CGG + chr3_2:34864548-34864567 None:intergenic 10.0%
!! TATTTGCATATTTATTTATA+TGG - chr3_2:34864843-34864862 Msa0404140:CDS 10.0%
!!! TTAAAATTATTTATTTCTGT+TGG - chr3_2:34865600-34865619 Msa0404140:intron 10.0%
!!! TTAATTAATTTATGAGTTTT+GGG - chr3_2:34865674-34865693 Msa0404140:intron 10.0%
!! AATATAATTAGAAAGTTAAC+GGG + chr3_2:34864547-34864566 None:intergenic 15.0%
!!! GGTTAATTTTTATTGATTAT+TGG - chr3_2:34864864-34864883 Msa0404140:CDS 15.0%
!!! AGTAGAAATTTTAAGTAATT+TGG - chr3_2:34865651-34865670 Msa0404140:intron 15.0%
!!! GTTAATTAATTTATGAGTTT+TGG - chr3_2:34865673-34865692 Msa0404140:intron 15.0%
!!! ATTTTAAAGTAAATTAAGCA+AGG + chr3_2:34865856-34865875 None:intergenic 15.0%
!! AATATAATTAGAAAGTTAAC+GGG + chr3_2:34864547-34864566 None:intergenic 15.0%
!!! GGTTAATTTTTATTGATTAT+TGG - chr3_2:34864864-34864883 Msa0404140:CDS 15.0%
!!! AGTAGAAATTTTAAGTAATT+TGG - chr3_2:34865651-34865670 Msa0404140:intron 15.0%
!!! GTTAATTAATTTATGAGTTT+TGG - chr3_2:34865673-34865692 Msa0404140:intron 15.0%
!!! ATTTTAAAGTAAATTAAGCA+AGG + chr3_2:34865856-34865875 None:intergenic 15.0%
!!! ATTTGTTTTACTTATGATAG+AGG - chr3_2:34864645-34864664 Msa0404140:CDS 20.0%
!! TTTAAGCTCTTAAAAAGATT+AGG + chr3_2:34864918-34864937 None:intergenic 20.0%
!! ACACTATTAGTACATAAAAA+GGG - chr3_2:34864950-34864969 Msa0404140:intron 20.0%
!! AATTGTTATGTGAGTTAAAA+TGG - chr3_2:34865086-34865105 Msa0404140:intron 20.0%
!!! TTTTTTCAATCAAATACACA+TGG + chr3_2:34865142-34865161 None:intergenic 20.0%
!! TGTATTTGATTGAAAAAACA+GGG - chr3_2:34865144-34865163 Msa0404140:intron 20.0%
!! TGTTTATTGAGAATATTAGA+GGG - chr3_2:34865930-34865949 Msa0404140:CDS 20.0%
!!! ATTTGTTTTACTTATGATAG+AGG - chr3_2:34864645-34864664 Msa0404140:CDS 20.0%
!! TTTAAGCTCTTAAAAAGATT+AGG + chr3_2:34864918-34864937 None:intergenic 20.0%
!! ACACTATTAGTACATAAAAA+GGG - chr3_2:34864950-34864969 Msa0404140:intron 20.0%
!! AATTGTTATGTGAGTTAAAA+TGG - chr3_2:34865086-34865105 Msa0404140:intron 20.0%
!!! TTTTTTCAATCAAATACACA+TGG + chr3_2:34865142-34865161 None:intergenic 20.0%
!! TGTATTTGATTGAAAAAACA+GGG - chr3_2:34865144-34865163 Msa0404140:intron 20.0%
!! TGTTTATTGAGAATATTAGA+GGG - chr3_2:34865930-34865949 Msa0404140:CDS 20.0%
! TTCTGTTAAAGATCATCAAT+GGG - chr3_2:34864107-34864126 Msa0404140:three_prime_UTR 25.0%
! AACTTCAAAGTGAAAATTGA+AGG + chr3_2:34864583-34864602 None:intergenic 25.0%
!! TTTGAAGTTTGAATGTATGT+GGG - chr3_2:34864594-34864613 Msa0404140:CDS 25.0%
!! AAGTTGTCTTTAAAGAATTG+TGG - chr3_2:34864710-34864729 Msa0404140:CDS 25.0%
!! AGTTGTCTTTAAAGAATTGT+GGG - chr3_2:34864711-34864730 Msa0404140:CDS 25.0%
! AGCTAACACTCAATAAAAAT+TGG - chr3_2:34864740-34864759 Msa0404140:CDS 25.0%
!! AGGTTGTCTTTGAAAAATTA+TGG + chr3_2:34864898-34864917 None:intergenic 25.0%
! GACACTATTAGTACATAAAA+AGG - chr3_2:34864949-34864968 Msa0404140:intron 25.0%
! GTGTATTTGATTGAAAAAAC+AGG - chr3_2:34865143-34865162 Msa0404140:intron 25.0%
!! AACTTATGAAGATTGTTGTT+GGG - chr3_2:34865481-34865500 Msa0404140:intron 25.0%
! GTGTTTATTGAGAATATTAG+AGG - chr3_2:34865929-34865948 Msa0404140:CDS 25.0%
! GTTTATTGAGAATATTAGAG+GGG - chr3_2:34865931-34865950 Msa0404140:CDS 25.0%
! TTTATTGAGAATATTAGAGG+GGG - chr3_2:34865932-34865951 Msa0404140:CDS 25.0%
! CTAATTAACACATTTCAACT+AGG + chr3_2:34866039-34866058 None:intergenic 25.0%
! CTAGTTGAAATGTGTTAATT+AGG - chr3_2:34866037-34866056 Msa0404140:CDS 25.0%
! TTCAATAATAAGCTACCAAT+AGG - chr3_2:34866116-34866135 Msa0404140:CDS 25.0%
! TTCTGTTAAAGATCATCAAT+GGG - chr3_2:34864107-34864126 Msa0404140:three_prime_UTR 25.0%
! AACTTCAAAGTGAAAATTGA+AGG + chr3_2:34864583-34864602 None:intergenic 25.0%
!! TTTGAAGTTTGAATGTATGT+GGG - chr3_2:34864594-34864613 Msa0404140:CDS 25.0%
!! AAGTTGTCTTTAAAGAATTG+TGG - chr3_2:34864710-34864729 Msa0404140:CDS 25.0%
!! AGTTGTCTTTAAAGAATTGT+GGG - chr3_2:34864711-34864730 Msa0404140:CDS 25.0%
! AGCTAACACTCAATAAAAAT+TGG - chr3_2:34864740-34864759 Msa0404140:CDS 25.0%
!! AGGTTGTCTTTGAAAAATTA+TGG + chr3_2:34864898-34864917 None:intergenic 25.0%
! GACACTATTAGTACATAAAA+AGG - chr3_2:34864949-34864968 Msa0404140:intron 25.0%
! GTGTATTTGATTGAAAAAAC+AGG - chr3_2:34865143-34865162 Msa0404140:intron 25.0%
!! AACTTATGAAGATTGTTGTT+GGG - chr3_2:34865481-34865500 Msa0404140:intron 25.0%
! GTGTTTATTGAGAATATTAG+AGG - chr3_2:34865929-34865948 Msa0404140:CDS 25.0%
! GTTTATTGAGAATATTAGAG+GGG - chr3_2:34865931-34865950 Msa0404140:CDS 25.0%
! TTTATTGAGAATATTAGAGG+GGG - chr3_2:34865932-34865951 Msa0404140:CDS 25.0%
! CTAATTAACACATTTCAACT+AGG + chr3_2:34866039-34866058 None:intergenic 25.0%
! CTAGTTGAAATGTGTTAATT+AGG - chr3_2:34866037-34866056 Msa0404140:CDS 25.0%
! TTCAATAATAAGCTACCAAT+AGG - chr3_2:34866116-34866135 Msa0404140:CDS 25.0%
TCCATTCACATATAGTTACA+AGG - chr3_2:34863963-34863982 Msa0404140:three_prime_UTR 30.0%
TCCTTGTAACTATATGTGAA+TGG + chr3_2:34863967-34863986 None:intergenic 30.0%
GTTCTGTTAAAGATCATCAA+TGG - chr3_2:34864106-34864125 Msa0404140:three_prime_UTR 30.0%
AAGAGGAGATTGAAAATCAA+AGG - chr3_2:34864268-34864287 Msa0404140:CDS 30.0%
ATGAGTACTTGAATGTTCTT+CGG - chr3_2:34864334-34864353 Msa0404140:CDS 30.0%
!! CTTTGAAGTTTGAATGTATG+TGG - chr3_2:34864593-34864612 Msa0404140:CDS 30.0%
TACTTATGATAGAGGAAAGA+TGG - chr3_2:34864653-34864672 Msa0404140:CDS 30.0%
AGAACAACATTTACAGTCTA+TGG - chr3_2:34865215-34865234 Msa0404140:intron 30.0%
GAACAACATTTACAGTCTAT+GGG - chr3_2:34865216-34865235 Msa0404140:intron 30.0%
AACAACATTTACAGTCTATG+GGG - chr3_2:34865217-34865236 Msa0404140:intron 30.0%
!! TTGGTTCTTTCGTTTTCTTT+TGG + chr3_2:34865245-34865264 None:intergenic 30.0%
GAGAACATAGGCTTAAATAA+TGG - chr3_2:34865267-34865286 Msa0404140:intron 30.0%
AAAGTGAAGAATTCAGCAAA+AGG + chr3_2:34865297-34865316 None:intergenic 30.0%
ATTACCAAGAACACAAACAA+TGG - chr3_2:34865382-34865401 Msa0404140:intron 30.0%
TTACCAAGAACACAAACAAT+GGG - chr3_2:34865383-34865402 Msa0404140:intron 30.0%
! CTTGGATAGAATTTTCATGT+TGG + chr3_2:34865448-34865467 None:intergenic 30.0%
ATTCTATCCAAGAAAAAACC+AGG - chr3_2:34865456-34865475 Msa0404140:intron 30.0%
CAACTTATGAAGATTGTTGT+TGG - chr3_2:34865480-34865499 Msa0404140:intron 30.0%
TTGTTGGGTTACAAAATCTT+AGG - chr3_2:34865496-34865515 Msa0404140:intron 30.0%
GGTAACATTAAGATGAAGAA+TGG + chr3_2:34865526-34865545 None:intergenic 30.0%
TCTTCATCTTAATGTTACCA+CGG - chr3_2:34865527-34865546 Msa0404140:intron 30.0%
!!! AGTTTTGGGTATGAATTGAT+TGG - chr3_2:34865688-34865707 Msa0404140:CDS 30.0%
TGTGAATCAACTATTAAGGA+CGG - chr3_2:34865763-34865782 Msa0404140:CDS 30.0%
ATATCCAAATCACTTAACGA+TGG + chr3_2:34865897-34865916 None:intergenic 30.0%
TCCATTCACATATAGTTACA+AGG - chr3_2:34863963-34863982 Msa0404140:three_prime_UTR 30.0%
TCCTTGTAACTATATGTGAA+TGG + chr3_2:34863967-34863986 None:intergenic 30.0%
GTTCTGTTAAAGATCATCAA+TGG - chr3_2:34864106-34864125 Msa0404140:three_prime_UTR 30.0%
AAGAGGAGATTGAAAATCAA+AGG - chr3_2:34864268-34864287 Msa0404140:CDS 30.0%
ATGAGTACTTGAATGTTCTT+CGG - chr3_2:34864334-34864353 Msa0404140:CDS 30.0%
!! CTTTGAAGTTTGAATGTATG+TGG - chr3_2:34864593-34864612 Msa0404140:CDS 30.0%
TACTTATGATAGAGGAAAGA+TGG - chr3_2:34864653-34864672 Msa0404140:CDS 30.0%
AGAACAACATTTACAGTCTA+TGG - chr3_2:34865215-34865234 Msa0404140:intron 30.0%
GAACAACATTTACAGTCTAT+GGG - chr3_2:34865216-34865235 Msa0404140:intron 30.0%
AACAACATTTACAGTCTATG+GGG - chr3_2:34865217-34865236 Msa0404140:intron 30.0%
!! TTGGTTCTTTCGTTTTCTTT+TGG + chr3_2:34865245-34865264 None:intergenic 30.0%
GAGAACATAGGCTTAAATAA+TGG - chr3_2:34865267-34865286 Msa0404140:intron 30.0%
AAAGTGAAGAATTCAGCAAA+AGG + chr3_2:34865297-34865316 None:intergenic 30.0%
ATTACCAAGAACACAAACAA+TGG - chr3_2:34865382-34865401 Msa0404140:intron 30.0%
TTACCAAGAACACAAACAAT+GGG - chr3_2:34865383-34865402 Msa0404140:intron 30.0%
! CTTGGATAGAATTTTCATGT+TGG + chr3_2:34865448-34865467 None:intergenic 30.0%
ATTCTATCCAAGAAAAAACC+AGG - chr3_2:34865456-34865475 Msa0404140:intron 30.0%
CAACTTATGAAGATTGTTGT+TGG - chr3_2:34865480-34865499 Msa0404140:intron 30.0%
TTGTTGGGTTACAAAATCTT+AGG - chr3_2:34865496-34865515 Msa0404140:intron 30.0%
GGTAACATTAAGATGAAGAA+TGG + chr3_2:34865526-34865545 None:intergenic 30.0%
TCTTCATCTTAATGTTACCA+CGG - chr3_2:34865527-34865546 Msa0404140:intron 30.0%
!!! AGTTTTGGGTATGAATTGAT+TGG - chr3_2:34865688-34865707 Msa0404140:CDS 30.0%
TGTGAATCAACTATTAAGGA+CGG - chr3_2:34865763-34865782 Msa0404140:CDS 30.0%
ATATCCAAATCACTTAACGA+TGG + chr3_2:34865897-34865916 None:intergenic 30.0%
! ATGTGAATGGATCTTGTTGT+GGG + chr3_2:34863954-34863973 None:intergenic 35.0%
TATGTGAATGGATCTTGTTG+TGG + chr3_2:34863955-34863974 None:intergenic 35.0%
TGACTATGATCATCTTCATG+CGG - chr3_2:34864011-34864030 Msa0404140:three_prime_UTR 35.0%
!! GTTCATTGTTGATGATTCCT+AGG + chr3_2:34864056-34864075 None:intergenic 35.0%
AACAAAATCTCCATGCAAAC+TGG - chr3_2:34864076-34864095 Msa0404140:three_prime_UTR 35.0%
ACAAAATCTCCATGCAAACT+GGG - chr3_2:34864077-34864096 Msa0404140:three_prime_UTR 35.0%
TGCCTTCTTCTTATGTTCAA+AGG - chr3_2:34864364-34864383 Msa0404140:intron 35.0%
GCCTTCTTCTTATGTTCAAA+GGG - chr3_2:34864365-34864384 Msa0404140:intron 35.0%
ACCCTTTGAACATAAGAAGA+AGG + chr3_2:34864369-34864388 None:intergenic 35.0%
AAGTTTGAATGTATGTGGGT+AGG - chr3_2:34864598-34864617 Msa0404140:CDS 35.0%
ATTGGACACATGCAAATCTA+TGG - chr3_2:34864758-34864777 Msa0404140:CDS 35.0%
!!! TCTATGGAAGTGGCATTTTT+TGG - chr3_2:34864774-34864793 Msa0404140:CDS 35.0%
!!! CTATGGAAGTGGCATTTTTT+GGG - chr3_2:34864775-34864794 Msa0404140:CDS 35.0%
AGGAGCAATAAACTTTGTGA+AGG - chr3_2:34865188-34865207 Msa0404140:intron 35.0%
ACAACATTTACAGTCTATGG+GGG - chr3_2:34865218-34865237 Msa0404140:intron 35.0%
AAAGAACCAAACGAGAACAT+AGG - chr3_2:34865255-34865274 Msa0404140:intron 35.0%
TTTAAGCCTATGTTCTCGTT+TGG + chr3_2:34865264-34865283 None:intergenic 35.0%
!!! AAGTTGTCCTGGTTTTTTCT+TGG + chr3_2:34865466-34865485 None:intergenic 35.0%
ACAATCTTCATAAGTTGTCC+TGG + chr3_2:34865477-34865496 None:intergenic 35.0%
TCTTTACTCAGTTAGTGTCA+AGG - chr3_2:34865563-34865582 Msa0404140:intron 35.0%
GAATAGTGTGGATGAAATTG+CGG - chr3_2:34865736-34865755 Msa0404140:CDS 35.0%
CTGCTGTGAATCAACTATTA+AGG - chr3_2:34865759-34865778 Msa0404140:CDS 35.0%
AAATCACTTAACGATGGAGA+AGG + chr3_2:34865891-34865910 None:intergenic 35.0%
TTCTCCATCGTTAAGTGATT+TGG - chr3_2:34865890-34865909 Msa0404140:CDS 35.0%
! ATGTGAATGGATCTTGTTGT+GGG + chr3_2:34863954-34863973 None:intergenic 35.0%
TATGTGAATGGATCTTGTTG+TGG + chr3_2:34863955-34863974 None:intergenic 35.0%
TGACTATGATCATCTTCATG+CGG - chr3_2:34864011-34864030 Msa0404140:three_prime_UTR 35.0%
!! GTTCATTGTTGATGATTCCT+AGG + chr3_2:34864056-34864075 None:intergenic 35.0%
AACAAAATCTCCATGCAAAC+TGG - chr3_2:34864076-34864095 Msa0404140:three_prime_UTR 35.0%
ACAAAATCTCCATGCAAACT+GGG - chr3_2:34864077-34864096 Msa0404140:three_prime_UTR 35.0%
TGCCTTCTTCTTATGTTCAA+AGG - chr3_2:34864364-34864383 Msa0404140:intron 35.0%
GCCTTCTTCTTATGTTCAAA+GGG - chr3_2:34864365-34864384 Msa0404140:intron 35.0%
ACCCTTTGAACATAAGAAGA+AGG + chr3_2:34864369-34864388 None:intergenic 35.0%
AAGTTTGAATGTATGTGGGT+AGG - chr3_2:34864598-34864617 Msa0404140:CDS 35.0%
ATTGGACACATGCAAATCTA+TGG - chr3_2:34864758-34864777 Msa0404140:CDS 35.0%
!!! TCTATGGAAGTGGCATTTTT+TGG - chr3_2:34864774-34864793 Msa0404140:CDS 35.0%
!!! CTATGGAAGTGGCATTTTTT+GGG - chr3_2:34864775-34864794 Msa0404140:CDS 35.0%
AGGAGCAATAAACTTTGTGA+AGG - chr3_2:34865188-34865207 Msa0404140:intron 35.0%
ACAACATTTACAGTCTATGG+GGG - chr3_2:34865218-34865237 Msa0404140:intron 35.0%
AAAGAACCAAACGAGAACAT+AGG - chr3_2:34865255-34865274 Msa0404140:intron 35.0%
TTTAAGCCTATGTTCTCGTT+TGG + chr3_2:34865264-34865283 None:intergenic 35.0%
!!! AAGTTGTCCTGGTTTTTTCT+TGG + chr3_2:34865466-34865485 None:intergenic 35.0%
ACAATCTTCATAAGTTGTCC+TGG + chr3_2:34865477-34865496 None:intergenic 35.0%
TCTTTACTCAGTTAGTGTCA+AGG - chr3_2:34865563-34865582 Msa0404140:intron 35.0%
GAATAGTGTGGATGAAATTG+CGG - chr3_2:34865736-34865755 Msa0404140:CDS 35.0%
CTGCTGTGAATCAACTATTA+AGG - chr3_2:34865759-34865778 Msa0404140:CDS 35.0%
AAATCACTTAACGATGGAGA+AGG + chr3_2:34865891-34865910 None:intergenic 35.0%
TTCTCCATCGTTAAGTGATT+TGG - chr3_2:34865890-34865909 Msa0404140:CDS 35.0%
GAACAAGAGAATGTTCTCCT+AGG - chr3_2:34864036-34864055 Msa0404140:three_prime_UTR 40.0%
AACAAGAATCCCAGTTTGCA+TGG + chr3_2:34864089-34864108 None:intergenic 40.0%
CACCGTTGATCAAACTATCA+CGG - chr3_2:34864161-34864180 Msa0404140:three_prime_UTR 40.0%
AGCCGTGATAGTTTGATCAA+CGG + chr3_2:34864166-34864185 None:intergenic 40.0%
! CAAGAGTGCAAAGAACAAAG+AGG - chr3_2:34864251-34864270 Msa0404140:exon 40.0%
CACATGCAAATCTATGGAAG+TGG - chr3_2:34864764-34864783 Msa0404140:CDS 40.0%
!!! GCATTTTTTGGGTGAGCTTT+AGG - chr3_2:34864786-34864805 Msa0404140:CDS 40.0%
GGTGACCAAGCTTCTATTAT+TGG - chr3_2:34865165-34865184 Msa0404140:intron 40.0%
GACCAAGCTTCTATTATTGG+AGG - chr3_2:34865168-34865187 Msa0404140:intron 40.0%
CTCCTCCAATAATAGAAGCT+TGG + chr3_2:34865173-34865192 None:intergenic 40.0%
CAACATTTACAGTCTATGGG+GGG - chr3_2:34865219-34865238 Msa0404140:intron 40.0%
GTGAAGAATTCAGCAAAAGG+TGG + chr3_2:34865294-34865313 None:intergenic 40.0%
CAACAACAACAACGTCACAA+TGG - chr3_2:34865350-34865369 Msa0404140:intron 40.0%
GGCAGACATTGAAGTTACAA+TGG - chr3_2:34865410-34865429 Msa0404140:intron 40.0%
! GTTGATAAGCCAGTTCTTGT+TGG + chr3_2:34865790-34865809 None:intergenic 40.0%
TGAGAATATTAGAGGGGGTA+AGG - chr3_2:34865937-34865956 Msa0404140:CDS 40.0%
TCTTCTGATAGCAGCAATTG+TGG - chr3_2:34865998-34866017 Msa0404140:CDS 40.0%
GTAATTCACATAGACCTGTG+AGG + chr3_2:34866088-34866107 None:intergenic 40.0%
GAACAAGAGAATGTTCTCCT+AGG - chr3_2:34864036-34864055 Msa0404140:three_prime_UTR 40.0%
AACAAGAATCCCAGTTTGCA+TGG + chr3_2:34864089-34864108 None:intergenic 40.0%
CACCGTTGATCAAACTATCA+CGG - chr3_2:34864161-34864180 Msa0404140:three_prime_UTR 40.0%
AGCCGTGATAGTTTGATCAA+CGG + chr3_2:34864166-34864185 None:intergenic 40.0%
! CAAGAGTGCAAAGAACAAAG+AGG - chr3_2:34864251-34864270 Msa0404140:exon 40.0%
CACATGCAAATCTATGGAAG+TGG - chr3_2:34864764-34864783 Msa0404140:CDS 40.0%
!!! GCATTTTTTGGGTGAGCTTT+AGG - chr3_2:34864786-34864805 Msa0404140:CDS 40.0%
GGTGACCAAGCTTCTATTAT+TGG - chr3_2:34865165-34865184 Msa0404140:intron 40.0%
GACCAAGCTTCTATTATTGG+AGG - chr3_2:34865168-34865187 Msa0404140:intron 40.0%
CTCCTCCAATAATAGAAGCT+TGG + chr3_2:34865173-34865192 None:intergenic 40.0%
CAACATTTACAGTCTATGGG+GGG - chr3_2:34865219-34865238 Msa0404140:intron 40.0%
GTGAAGAATTCAGCAAAAGG+TGG + chr3_2:34865294-34865313 None:intergenic 40.0%
CAACAACAACAACGTCACAA+TGG - chr3_2:34865350-34865369 Msa0404140:intron 40.0%
GGCAGACATTGAAGTTACAA+TGG - chr3_2:34865410-34865429 Msa0404140:intron 40.0%
! GTTGATAAGCCAGTTCTTGT+TGG + chr3_2:34865790-34865809 None:intergenic 40.0%
TGAGAATATTAGAGGGGGTA+AGG - chr3_2:34865937-34865956 Msa0404140:CDS 40.0%
TCTTCTGATAGCAGCAATTG+TGG - chr3_2:34865998-34866017 Msa0404140:CDS 40.0%
GTAATTCACATAGACCTGTG+AGG + chr3_2:34866088-34866107 None:intergenic 40.0%
TGATCAACGGTGCAGATTTC+AGG + chr3_2:34864153-34864172 None:intergenic 45.0%
!! GTTGCACTTGTTGTGTACTG+AGG + chr3_2:34865321-34865340 None:intergenic 45.0%
CAGCCCATTGTTTGTGTTCT+TGG + chr3_2:34865389-34865408 None:intergenic 45.0%
!! AGAACACAAACAATGGGCTG+TGG - chr3_2:34865389-34865408 Msa0404140:intron 45.0%
TGTTACCACGGTCGATGATA+TGG - chr3_2:34865539-34865558 Msa0404140:intron 45.0%
AAGAACCATATCATCGACCG+TGG + chr3_2:34865547-34865566 None:intergenic 45.0%
GGGTATGAATTGATTGGAGC+AGG - chr3_2:34865694-34865713 Msa0404140:CDS 45.0%
GAATTGATTGGAGCAGGTAG+AGG - chr3_2:34865700-34865719 Msa0404140:CDS 45.0%
ACCAACAGTATGAACCTCAC+AGG - chr3_2:34866071-34866090 Msa0404140:CDS 45.0%
ACCTGTGAGGTTCATACTGT+TGG + chr3_2:34866075-34866094 None:intergenic 45.0%
TGATCAACGGTGCAGATTTC+AGG + chr3_2:34864153-34864172 None:intergenic 45.0%
!! GTTGCACTTGTTGTGTACTG+AGG + chr3_2:34865321-34865340 None:intergenic 45.0%
CAGCCCATTGTTTGTGTTCT+TGG + chr3_2:34865389-34865408 None:intergenic 45.0%
!! AGAACACAAACAATGGGCTG+TGG - chr3_2:34865389-34865408 Msa0404140:intron 45.0%
TGTTACCACGGTCGATGATA+TGG - chr3_2:34865539-34865558 Msa0404140:intron 45.0%
AAGAACCATATCATCGACCG+TGG + chr3_2:34865547-34865566 None:intergenic 45.0%
GGGTATGAATTGATTGGAGC+AGG - chr3_2:34865694-34865713 Msa0404140:CDS 45.0%
GAATTGATTGGAGCAGGTAG+AGG - chr3_2:34865700-34865719 Msa0404140:CDS 45.0%
ACCAACAGTATGAACCTCAC+AGG - chr3_2:34866071-34866090 Msa0404140:CDS 45.0%
ACCTGTGAGGTTCATACTGT+TGG + chr3_2:34866075-34866094 None:intergenic 45.0%
!!! TTTTTAAATTTACTTAATTA+TGG - chr3_2:34864521-34864540 Msa0404140:CDS 5.0%
!!! TTTTTAAATTTACTTAATTA+TGG - chr3_2:34864521-34864540 Msa0404140:CDS 5.0%
AACGGTGCAGATTTCAGGAG+AGG + chr3_2:34864148-34864167 None:intergenic 50.0%
! TGCAGTTGCTGTTGCTTCCA+CGG + chr3_2:34864205-34864224 None:intergenic 50.0%
CAACAGCAACTGCAACGTGT+AGG - chr3_2:34864211-34864230 Msa0404140:three_prime_UTR 50.0%
TTGATTGGAGCAGGTAGAGG+AGG - chr3_2:34865703-34865722 Msa0404140:CDS 50.0%
TGATTGGAGCAGGTAGAGGA+GGG - chr3_2:34865704-34865723 Msa0404140:CDS 50.0%
AAGGACGGTCCAACAAGAAC+TGG - chr3_2:34865778-34865797 Msa0404140:CDS 50.0%
AACGGTGCAGATTTCAGGAG+AGG + chr3_2:34864148-34864167 None:intergenic 50.0%
! TGCAGTTGCTGTTGCTTCCA+CGG + chr3_2:34864205-34864224 None:intergenic 50.0%
CAACAGCAACTGCAACGTGT+AGG - chr3_2:34864211-34864230 Msa0404140:three_prime_UTR 50.0%
TTGATTGGAGCAGGTAGAGG+AGG - chr3_2:34865703-34865722 Msa0404140:CDS 50.0%
TGATTGGAGCAGGTAGAGGA+GGG - chr3_2:34865704-34865723 Msa0404140:CDS 50.0%
AAGGACGGTCCAACAAGAAC+TGG - chr3_2:34865778-34865797 Msa0404140:CDS 50.0%
GTTGCTTCCACGGTGGAAGA+AGG + chr3_2:34864195-34864214 None:intergenic 55.0%
! AGTTGCTGTTGCTTCCACGG+TGG + chr3_2:34864202-34864221 None:intergenic 55.0%
GATTGGAGCAGGTAGAGGAG+GGG - chr3_2:34865705-34865724 Msa0404140:CDS 55.0%
GGGGAGTCAGCTGAATAGTG+TGG - chr3_2:34865724-34865743 Msa0404140:CDS 55.0%
GTTGCTTCCACGGTGGAAGA+AGG + chr3_2:34864195-34864214 None:intergenic 55.0%
! AGTTGCTGTTGCTTCCACGG+TGG + chr3_2:34864202-34864221 None:intergenic 55.0%
GATTGGAGCAGGTAGAGGAG+GGG - chr3_2:34865705-34865724 Msa0404140:CDS 55.0%
GGGGAGTCAGCTGAATAGTG+TGG - chr3_2:34865724-34865743 Msa0404140:CDS 55.0%
TCCTCCTCCTTCTTCCACCG+TGG - chr3_2:34864185-34864204 Msa0404140:three_prime_UTR 60.0%
TCCACGGTGGAAGAAGGAGG+AGG + chr3_2:34864189-34864208 None:intergenic 60.0%
GCTTCCACGGTGGAAGAAGG+AGG + chr3_2:34864192-34864211 None:intergenic 60.0%
TCCTCCTCCTTCTTCCACCG+TGG - chr3_2:34864185-34864204 Msa0404140:three_prime_UTR 60.0%
TCCACGGTGGAAGAAGGAGG+AGG + chr3_2:34864189-34864208 None:intergenic 60.0%
GCTTCCACGGTGGAAGAAGG+AGG + chr3_2:34864192-34864211 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34863928 34866143 34863928 ID=Msa0404140;Name=Msa0404140
chr3_2 mRNA 34863928 34866143 34863928 ID=Msa0404140-mRNA-1;Parent=Msa0404140;Name=Msa0404140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.66|1|1|1|3|326|326
chr3_2 exon 34863928 34864355 34863928 ID=Msa0404140-mRNA-1:exon:7128;Parent=Msa0404140-mRNA-1
chr3_2 exon 34864487 34864906 34864487 ID=Msa0404140-mRNA-1:exon:7127;Parent=Msa0404140-mRNA-1
chr3_2 exon 34865685 34866143 34865685 ID=Msa0404140-mRNA-1:exon:7126;Parent=Msa0404140-mRNA-1
chr3_2 CDS 34865685 34866143 34865685 ID=Msa0404140-mRNA-1:cds;Parent=Msa0404140-mRNA-1
chr3_2 CDS 34864487 34864906 34864487 ID=Msa0404140-mRNA-1:cds;Parent=Msa0404140-mRNA-1
chr3_2 CDS 34864254 34864355 34864254 ID=Msa0404140-mRNA-1:cds;Parent=Msa0404140-mRNA-1
chr3_2 three_prime_UTR 34863928 34864253 34863928 ID=Msa0404140-mRNA-1:three_prime_utr;Parent=Msa0404140-mRNA-1
Gene Sequence

>Msa0404140

ATGGCTCTTGAAACTGTGGTTTTCCCACAACAAGATCCATTCACATATAGTTACAAGGACAATTACTTCAACTCTTTGAACAATGACTATGATCATCTTCATGCGGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAATGAACAACAAAATCTCCATGCAAACTGGGATTCTTGTTCTGTTAAAGATCATCAATGGGAATATTCACACTCTTCCTCTCCTGAAATCTGCACCGTTGATCAAACTATCACGGCTCCTCCTCCTTCTTCCACCGTGGAAGCAACAGCAACTGCAACGTGTAGGAGAAAGCGACGTCGTATCAAGAGTGCAAAGAACAAAGAGGAGATTGAAAATCAAAGGATGACTCATATTACTGTTGAACGCAATCGAAGAAAACAAATGAATGAGTACTTGAATGTTCTTCGGTCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGAGCAATAAACTTTGTGAAGGAGTTAGAACAACATTTACAGTCTATGGGGGGCCAAAAGAAAACGAAAGAACCAAACGAGAACATAGGCTTAAATAATGGACCACCTTTTGCTGAATTCTTCACTTTTCCTCAGTACACAACAAGTGCAACTCAGAACAACAACAACAACAACGTCACAATGGAACAACACAATTACCAAGAACACAAACAATGGGCTGTGGCAGACATTGAAGTTACAATGGTAGATAGTCATGCCAACATGAAAATTCTATCCAAGAAAAAACCAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACCATTCTTCATCTTAATGTTACCACGGTCGATGATATGGTTCTTTACTCAGTTAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGACGGTCCAACAAGAACTGGCTTATCAACTAAATTGA

Protein sequence

>Msa0404140

MALETVVFPQQDPFTYSYKDNYFNSLNNDYDHLHAEEQENVLLGIINNEQQNLHANWDSCSVKDHQWEYSHSSSPEICTVDQTITAPPPSSTVEATATATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQSMGGQKKTKEPNENIGLNNGPPFAEFFTFPQYTTSATQNNNNNNVTMEQHNYQEHKQWAVADIEVTMVDSHANMKILSKKKPGQLMKIVVGLQNLRLTILHLNVTTVDDMVLYSVSVKVEEGSQLNSVDEIAAAVNQLLRTVQQELAYQLN*