AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484210 MtrunA17_Chr5g0406291 91.036 357 25 3 1 356 1 351 0.0 585
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484210 AT4G35760.1 58.735 332 112 4 41 350 37 365 2.27e-130 378
Msa0484210 AT4G35760.2 58.413 315 106 4 41 333 37 348 4.76e-121 354

Find 102 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCAGTTGAGGAGGTTTC+TGG 0.145576 3_4:+1521625 None:intergenic
TTCCCCACATGGATTATTAA+TGG 0.246472 3_4:-1518499 Msa0484210:CDS
GTGCATATGTATGTCTAAAA+AGG 0.267739 3_4:+1518227 None:intergenic
GATTCCTGAGATTAGCTTAT+AGG 0.278635 3_4:+1521600 None:intergenic
GGTGTACCTCTTCCTTTGAT+TGG 0.284171 3_4:-1520730 Msa0484210:CDS
TTGAGAATTGGAAAATTCTA+TGG 0.293650 3_4:+1521809 None:intergenic
CTAAAATGTATGGAGCTTTC+TGG 0.298863 3_4:-1519228 Msa0484210:CDS
GTAATCTCGGTTGCAAAATA+TGG 0.311759 3_4:+1519307 None:intergenic
ACAAAGAAGAATTTACCTTT+TGG 0.320249 3_4:-1520661 Msa0484210:CDS
CAATAGGAGCAAGATGATTC+AGG 0.349539 3_4:+1520541 None:intergenic
GTGTACCTCTTCCTTTGATT+GGG 0.355997 3_4:-1520729 Msa0484210:CDS
GGGTTCGGTCTGGGTTGGTT+CGG 0.374341 3_4:+1521712 None:intergenic
TTGCTCCTATTGCCTACTTT+CGG 0.377075 3_4:-1520530 Msa0484210:CDS
ATCTCAGGAATCGCCGGAAT+CGG 0.386284 3_4:-1521589 Msa0484210:CDS
GCAAGGTATTTGCATTCAAT+AGG 0.389958 3_4:-1519253 Msa0484210:CDS
GCAAGAGAAGTACAAACAAC+TGG 0.391109 3_4:-1520362 Msa0484210:CDS
GACAAAGCAAAGGGGCTTGA+TGG 0.394543 3_4:+1519280 None:intergenic
CATCGGAGCCGGTGAACTTA+AGG 0.397674 3_4:+1521539 None:intergenic
GGTTTCGATGAATCCGATTC+CGG 0.399135 3_4:+1521576 None:intergenic
TTTCTGGTGTTCACACTGTC+TGG 0.401462 3_4:-1519212 Msa0484210:CDS
TGCTTAGACGCTAAAATTGA+AGG 0.402247 3_4:-1518523 Msa0484210:CDS
AACTTCTCGATACAGATGTT+TGG 0.404936 3_4:-1518625 Msa0484210:intron
ACCTCTTCCTTTGATTGGGA+TGG 0.417711 3_4:-1520725 Msa0484210:CDS
GTAATCACTATTGAGTATAT+TGG 0.422495 3_4:+1521486 None:intergenic
TTCCTCTTGATACAGAGGTT+TGG 0.423806 3_4:-1518153 Msa0484210:three_prime_UTR
GAGAACCGAAAGTAGGCAAT+AGG 0.426376 3_4:+1520525 None:intergenic
GCAGTTGTTTATTGCTAGCT+TGG 0.427082 3_4:-1520335 Msa0484210:CDS
TGAAGGTGGCCATTGAGAAT+TGG 0.428234 3_4:+1521797 None:intergenic
AATGCTCAATTAGTATTGCT+TGG 0.431355 3_4:-1520625 Msa0484210:CDS
GAGCAAGTGCCACCGCCGAC+AGG 0.433146 3_4:+1521508 None:intergenic
GAGTGGTGAAGTGGAATTAT+CGG 0.436626 3_4:-1518373 Msa0484210:CDS
CTTGTACAAAGGGTTCGGTC+TGG 0.436938 3_4:+1521702 None:intergenic
TTGTACAAAGGGTTCGGTCT+GGG 0.437192 3_4:+1521703 None:intergenic
GTCTGGGTTGGTTCGGAGAA+CGG 0.440846 3_4:+1521719 None:intergenic
CTCTTCTCGTTTCTTCGCAC+CGG 0.443701 3_4:-1521752 Msa0484210:CDS
TCGGAGTTGGCACAAGCGTC+TGG 0.447827 3_4:-1518354 Msa0484210:CDS
TCAATAGGAGCTAAAATGTA+TGG 0.450745 3_4:-1519238 Msa0484210:CDS
GTCTTCTGCCCTGTCGGCGG+TGG 0.451403 3_4:-1521517 Msa0484210:CDS
CAGAAACCTCCTCAACTGAT+TGG 0.455868 3_4:-1521624 Msa0484210:CDS
ACGTGAGGCGGCGAAGCAAT+TGG 0.470992 3_4:-1518602 Msa0484210:CDS
GGTGACAATTCTTGTACAAA+GGG 0.475927 3_4:+1521692 None:intergenic
GAAATGCTCCTCTTCATCTT+CGG 0.480605 3_4:-1521650 Msa0484210:CDS
CAATTCTTGTACAAAGGGTT+CGG 0.481586 3_4:+1521697 None:intergenic
GTTCCTGTTCGATATCCGTC+AGG 0.487353 3_4:+1518562 None:intergenic
GGTAGAATTAGCACTGCTAT+AGG 0.491448 3_4:+1520291 None:intergenic
TTGGATCTGTTAACCCCAAA+AGG 0.493640 3_4:+1520646 None:intergenic
CTTGCTTACCTTAAGTTCAC+CGG 0.499908 3_4:-1521547 Msa0484210:CDS
AGGTGACAATTCTTGTACAA+AGG 0.500035 3_4:+1521691 None:intergenic
CACATGGATTATTAATGGCC+AGG 0.503308 3_4:-1518494 Msa0484210:intron
TTTCCTGACGGATATCGAAC+AGG 0.504131 3_4:-1518565 Msa0484210:CDS
AGCACTAGCAGTTGCCATTG+AGG 0.509543 3_4:+1520594 None:intergenic
CCTTTGCTTTGTCTCTAGCA+AGG 0.512217 3_4:-1519270 Msa0484210:CDS
AAGCAATACTAATTGAGCAT+TGG 0.514041 3_4:+1520627 None:intergenic
GGAGAACGGTTTAAACGAAC+CGG 0.514067 3_4:+1521733 None:intergenic
TGTGAGAATGAATAACGAAA+AGG 0.525624 3_4:+1520498 None:intergenic
GCTTGGAAGCACAACCTCAA+TGG 0.530217 3_4:-1520608 Msa0484210:CDS
ACAAAGGGTTCGGTCTGGGT+TGG 0.532809 3_4:+1521707 None:intergenic
ACAAGAATTGTCACCTTCAG+AGG 0.535413 3_4:-1521684 Msa0484210:CDS
CTTGCTAGAGACAAAGCAAA+GGG 0.535414 3_4:+1519271 None:intergenic
AAATTGAAGGTTTCCCCACA+TGG 0.537433 3_4:-1518510 Msa0484210:CDS
AAGCTAATCTCAGGAATCGC+CGG 0.538082 3_4:-1521595 Msa0484210:CDS
GTTATTCATTCTCACACTCA+AGG 0.544153 3_4:-1520491 Msa0484210:intron
TCCGATGTCTTCTGCCCTGT+CGG 0.546966 3_4:-1521523 Msa0484210:CDS
TGGACCTATAAGCTAATCTC+AGG 0.548745 3_4:-1521604 Msa0484210:CDS
AGCAAGTGCCACCGCCGACA+GGG 0.551052 3_4:+1521509 None:intergenic
TGATGTCTACTTTAGCAGCA+TGG 0.552378 3_4:-1519344 Msa0484210:intron
TCAGGTTCTGAGTGGTGAAG+TGG 0.555245 3_4:-1518382 Msa0484210:intron
TGAAGTGGAATTATCGGAGT+TGG 0.556007 3_4:-1518367 Msa0484210:CDS
GCCATCCCAATCAAAGGAAG+AGG 0.559625 3_4:+1520724 None:intergenic
TTCTGGTTCCGAAGATGAAG+AGG 0.564283 3_4:+1521642 None:intergenic
GAAGAGGAGCATTTCAGAGG+TGG 0.566119 3_4:+1521658 None:intergenic
CATCTCCTTCAGGTTCTGAG+TGG 0.568206 3_4:-1518390 Msa0484210:intron
AGGGCAGAAGACATCGGAGC+CGG 0.571695 3_4:+1521528 None:intergenic
GATGAAGAGGAGCATTTCAG+AGG 0.577501 3_4:+1521655 None:intergenic
CTTATAGGTCCAATCAGTTG+AGG 0.580977 3_4:+1521615 None:intergenic
CAAGAGAAGTACAAACAACT+GGG 0.583508 3_4:-1520361 Msa0484210:CDS
AGGACAAGAGAACCGAAAGT+AGG 0.584444 3_4:+1520518 None:intergenic
ATAGGTCCAATCAGTTGAGG+AGG 0.590947 3_4:+1521618 None:intergenic
TAACATTCCTCTTGATACAG+AGG 0.591280 3_4:-1518158 Msa0484210:three_prime_UTR
GCTTGATGGAGTTGTAATCT+CGG 0.593784 3_4:+1519294 None:intergenic
GTCCAAACCTCTGTATCAAG+AGG 0.593909 3_4:+1518151 None:intergenic
GCCGACAGGGCAGAAGACAT+CGG 0.598595 3_4:+1521522 None:intergenic
TACGCAGCCATCCCAATCAA+AGG 0.601856 3_4:+1520718 None:intergenic
AGAATTAGCACTGCTATAGG+AGG 0.607313 3_4:+1520294 None:intergenic
TGGCCATTAATAATCCATGT+GGG 0.611279 3_4:+1518496 None:intergenic
GATGTCTTCTGCCCTGTCGG+CGG 0.613554 3_4:-1521520 Msa0484210:CDS
CGGTGAACTTAAGGTAAGCA+AGG 0.623060 3_4:+1521548 None:intergenic
GCAGTGCTAATTCTACCTCA+AGG 0.623222 3_4:-1520285 Msa0484210:intron
GCGAAGAAACGAGAAGAGGA+AGG 0.634644 3_4:+1521757 None:intergenic
CTGGCCATTAATAATCCATG+TGG 0.635561 3_4:+1518495 None:intergenic
CGGTGCGAAGAAACGAGAAG+AGG 0.639817 3_4:+1521753 None:intergenic
TCAGAGGTGGAAACCTCTGA+AGG 0.641484 3_4:+1521671 None:intergenic
ACAGATGTTTGGACGTGAGG+CGG 0.647976 3_4:-1518614 Msa0484210:intron
GATACAGATGTTTGGACGTG+AGG 0.652504 3_4:-1518617 Msa0484210:intron
CCTTGCTAGAGACAAAGCAA+AGG 0.653967 3_4:+1519270 None:intergenic
GGCGAAGCAATTGGATTACG+TGG 0.657076 3_4:-1518593 Msa0484210:CDS
GGCCATTAATAATCCATGTG+GGG 0.662317 3_4:+1518497 None:intergenic
CTTAAGGTAAGCAAGGTACG+AGG 0.662511 3_4:+1521555 None:intergenic
TGATAGTGTTGTAACAGTGA+AGG 0.677955 3_4:+1521780 None:intergenic
TAGTGTTGTAACAGTGAAGG+TGG 0.684390 3_4:+1521783 None:intergenic
AGATGATTCAGGAAACGCTG+TGG 0.726566 3_4:+1520552 None:intergenic
TTGCTAGAGACAAAGCAAAG+GGG 0.737943 3_4:+1519272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATATTATCTACTTATAT+AGG + chr3_4:1518794-1518813 None:intergenic 15.0%
!!! CATAGTTATTTAAAACTTAA+AGG + chr3_4:1519031-1519050 None:intergenic 15.0%
!! TAAAATGGAAATTTCAAAAA+GGG + chr3_4:1519552-1519571 None:intergenic 15.0%
!! ACAAATTAGTTAGTTAGTTA+AGG + chr3_4:1518512-1518531 None:intergenic 20.0%
!!! CTATTTTCACAAATTATTAC+CGG + chr3_4:1518863-1518882 None:intergenic 20.0%
!!! AAAAGCATCAAATAAAACAT+AGG + chr3_4:1519124-1519143 None:intergenic 20.0%
!! AAAAAGGAAATAGAAAAAGT+TGG + chr3_4:1519509-1519528 None:intergenic 20.0%
!! CTAAAATGGAAATTTCAAAA+AGG + chr3_4:1519553-1519572 None:intergenic 20.0%
!!! CTTTTTGAAATTTCCATTTT+AGG - chr3_4:1519551-1519570 Msa0484210:intron 20.0%
!! TATAACACAAACTAAAGTTA+TGG + chr3_4:1521017-1521036 None:intergenic 20.0%
!! TTCAATTGGATTTGTATATT+TGG - chr3_4:1521131-1521150 Msa0484210:intron 20.0%
!! ATTACCAAGAATAGAAAAAT+AGG + chr3_4:1521264-1521283 None:intergenic 20.0%
!! TTCTATCAAAAACATTAACT+AGG + chr3_4:1521637-1521656 None:intergenic 20.0%
! TTGAGAATTGGAAAATTCTA+TGG + chr3_4:1518140-1518159 None:intergenic 25.0%
!! TAGAATTTTCCAATTCTCAA+TGG - chr3_4:1518140-1518159 Msa0484210:three_prime_UTR 25.0%
! GTAATCACTATTGAGTATAT+TGG + chr3_4:1518463-1518482 None:intergenic 25.0%
! ATAACCATTTATCATAGAAC+TGG - chr3_4:1518600-1518619 Msa0484210:CDS 25.0%
! AAATATTGTGTGAATCAAAG+TGG - chr3_4:1519179-1519198 Msa0484210:intron 25.0%
!! ACAAAGAAGAATTTACCTTT+TGG - chr3_4:1519285-1519304 Msa0484210:CDS 25.0%
!! CAAAGAAGAATTTACCTTTT+GGG - chr3_4:1519286-1519305 Msa0484210:CDS 25.0%
!! AAAGAAGAATTTACCTTTTG+GGG - chr3_4:1519287-1519306 Msa0484210:CDS 25.0%
!!! AAATTTCCATTTTAGGACAT+TGG - chr3_4:1519558-1519577 Msa0484210:intron 25.0%
!! TTTCATGAGATTTTACATTC+AGG - chr3_4:1519817-1519836 Msa0484210:intron 25.0%
! AGCTTAGAAAAAAGGAATAT+TGG + chr3_4:1519872-1519891 None:intergenic 25.0%
! AAAGCACAAAAAATACATGA+AGG + chr3_4:1519973-1519992 None:intergenic 25.0%
!!! TTTTTCTTTAAGGCTTTTAC+AGG + chr3_4:1520160-1520179 None:intergenic 25.0%
! CAAATAATAGCAAATGGAAA+TGG - chr3_4:1520198-1520217 Msa0484210:intron 25.0%
! ACATTATCAAAACTACTTGA+GGG + chr3_4:1520227-1520246 None:intergenic 25.0%
! TACATTATCAAAACTACTTG+AGG + chr3_4:1520228-1520247 None:intergenic 25.0%
! TTTCAAGCTTCTTAAAATCA+CGG - chr3_4:1520873-1520892 Msa0484210:intron 25.0%
! AGGAATGTATCTTTCAAAAA+AGG - chr3_4:1521064-1521083 Msa0484210:intron 25.0%
!!! TCAACCTATTTTTCTATTCT+TGG - chr3_4:1521257-1521276 Msa0484210:intron 25.0%
!! ATAAATGGCCATAATTTGCT+GGG + chr3_4:1518756-1518775 None:intergenic 30.0%
CAATTGTGATAGCTCATAAA+TGG + chr3_4:1518771-1518790 None:intergenic 30.0%
AAGCAATACTAATTGAGCAT+TGG + chr3_4:1519322-1519341 None:intergenic 30.0%
AATGCTCAATTAGTATTGCT+TGG - chr3_4:1519321-1519340 Msa0484210:CDS 30.0%
TGTGAGAATGAATAACGAAA+AGG + chr3_4:1519451-1519470 None:intergenic 30.0%
ATACAGTAATATTCACCTTG+AGG + chr3_4:1519679-1519698 None:intergenic 30.0%
ATTGATGCTAGTATTTCACT+AGG - chr3_4:1519767-1519786 Msa0484210:intron 30.0%
! CACTAGGTTGAACAAATTTA+AGG - chr3_4:1519783-1519802 Msa0484210:intron 30.0%
TCGGTAGAATGTATTTAATC+TGG - chr3_4:1519928-1519947 Msa0484210:intron 30.0%
CAAACATTCAACTGAAAGAA+GGG + chr3_4:1520051-1520070 None:intergenic 30.0%
GGAGTTAATTATGCTTAACA+CGG + chr3_4:1520089-1520108 None:intergenic 30.0%
!!! CCACTACACTTTTTTCTTTA+AGG + chr3_4:1520170-1520189 None:intergenic 30.0%
! CCTTAAAGAAAAAAGTGTAG+TGG - chr3_4:1520167-1520186 Msa0484210:intron 30.0%
!! AGAAAAAAGTGTAGTGGATT+TGG - chr3_4:1520173-1520192 Msa0484210:intron 30.0%
TTGGCACAAATAATAGCAAA+TGG - chr3_4:1520192-1520211 Msa0484210:intron 30.0%
GTACAAATGTTGTCAAATAG+TGG - chr3_4:1520256-1520275 Msa0484210:intron 30.0%
ATCCTTCAAAATTTGGTCAT+AGG + chr3_4:1520328-1520347 None:intergenic 30.0%
!! TATGACCAAATTTTGAAGGA+TGG - chr3_4:1520327-1520346 Msa0484210:CDS 30.0%
AAAATCCTCAATAAAATGCC+GGG + chr3_4:1520359-1520378 None:intergenic 30.0%
CAAAATCCTCAATAAAATGC+CGG + chr3_4:1520360-1520379 None:intergenic 30.0%
TGATGACATTATACAAGTCA+GGG + chr3_4:1520411-1520430 None:intergenic 30.0%
ACTTGTATAATGTCATCACA+TGG - chr3_4:1520413-1520432 Msa0484210:intron 30.0%
! TTTTATTCATCGCCATTATG+TGG - chr3_4:1520484-1520503 Msa0484210:intron 30.0%
TCAATAGGAGCTAAAATGTA+TGG - chr3_4:1520708-1520727 Msa0484210:CDS 30.0%
TACAAATCCAATTGAAACCA+AGG + chr3_4:1521127-1521146 None:intergenic 30.0%
AACATAAGACATTCTTTACC+TGG + chr3_4:1521473-1521492 None:intergenic 30.0%
GTGCATATGTATGTCTAAAA+AGG + chr3_4:1521722-1521741 None:intergenic 30.0%
! TGATAGTGTTGTAACAGTGA+AGG + chr3_4:1518169-1518188 None:intergenic 35.0%
CAATTCTTGTACAAAGGGTT+CGG + chr3_4:1518252-1518271 None:intergenic 35.0%
GGTGACAATTCTTGTACAAA+GGG + chr3_4:1518257-1518276 None:intergenic 35.0%
AGGTGACAATTCTTGTACAA+AGG + chr3_4:1518258-1518277 None:intergenic 35.0%
!! GATTCCTGAGATTAGCTTAT+AGG + chr3_4:1518349-1518368 None:intergenic 35.0%
ATAGACGATACCAAAAACGA+CGG + chr3_4:1518487-1518506 None:intergenic 35.0%
GCAACCAGTTCTATGATAAA+TGG + chr3_4:1518607-1518626 None:intergenic 35.0%
!! AGCTTATTTCTAAGCTCTCT+AGG + chr3_4:1518700-1518719 None:intergenic 35.0%
TAGAAATAAGCTGCAACGTA+TGG - chr3_4:1518708-1518727 Msa0484210:intron 35.0%
! CATAAATGGCCATAATTTGC+TGG + chr3_4:1518757-1518776 None:intergenic 35.0%
ACAAATTATTACCGGTGCAT+AGG + chr3_4:1518855-1518874 None:intergenic 35.0%
GACACCAACACAATACATAT+CGG + chr3_4:1518935-1518954 None:intergenic 35.0%
TGTCAAACACTAATGCATGT+TGG - chr3_4:1518951-1518970 Msa0484210:intron 35.0%
AGCACTAAACTTGCAATTGA+AGG + chr3_4:1518988-1519007 None:intergenic 35.0%
AATCAAAGTGGTATTGCATC+TGG - chr3_4:1519191-1519210 Msa0484210:intron 35.0%
GTTATTCATTCTCACACTCA+AGG - chr3_4:1519455-1519474 Msa0484210:intron 35.0%
TGCAATCCAATGTCCTAAAA+TGG + chr3_4:1519567-1519586 None:intergenic 35.0%
! CAAGAGAAGTACAAACAACT+GGG - chr3_4:1519585-1519604 Msa0484210:intron 35.0%
CTGAAAGCAGCTTAGAAAAA+AGG + chr3_4:1519880-1519899 None:intergenic 35.0%
!! TGTTGACTTCGATATGACAT+CGG - chr3_4:1519909-1519928 Msa0484210:intron 35.0%
GGGGAAGTTATTACTAACAA+AGG + chr3_4:1520006-1520025 None:intergenic 35.0%
ATTCAACTGAAAGAAGGGAT+GGG + chr3_4:1520046-1520065 None:intergenic 35.0%
GCAAACATTCAACTGAAAGA+AGG + chr3_4:1520052-1520071 None:intergenic 35.0%
AATTGTAAGATCAGTCAAGC+AGG - chr3_4:1520121-1520140 Msa0484210:intron 35.0%
AAATCCTCAATAAAATGCCG+GGG + chr3_4:1520358-1520377 None:intergenic 35.0%
! CGGCATTTTATTGAGGATTT+TGG - chr3_4:1520358-1520377 Msa0484210:CDS 35.0%
GTGATGACATTATACAAGTC+AGG + chr3_4:1520412-1520431 None:intergenic 35.0%
GGCGATGAATAAAATTCTGT+AGG + chr3_4:1520478-1520497 None:intergenic 35.0%
TCCTATCAGAGATTGAAGTT+AGG - chr3_4:1520533-1520552 Msa0484210:CDS 35.0%
ACCTAACTTCAATCTCTGAT+AGG + chr3_4:1520537-1520556 None:intergenic 35.0%
GTAATCTCGGTTGCAAAATA+TGG + chr3_4:1520642-1520661 None:intergenic 35.0%
! GCAAGGTATTTGCATTCAAT+AGG - chr3_4:1520693-1520712 Msa0484210:CDS 35.0%
CTAAAATGTATGGAGCTTTC+TGG - chr3_4:1520718-1520737 Msa0484210:CDS 35.0%
TAACAAACAGGCACTTAGTA+AGG + chr3_4:1520808-1520827 None:intergenic 35.0%
! TAAGTGCCTGTTTGTTAACA+CGG - chr3_4:1520811-1520830 Msa0484210:intron 35.0%
! TTGTAGAGTTGGTCAAAACT+CGG + chr3_4:1520853-1520872 None:intergenic 35.0%
GAAGCTTGAAATTGTAGAGT+TGG + chr3_4:1520864-1520883 None:intergenic 35.0%
AAGCTTCTTAAAATCACGGT+GGG - chr3_4:1520877-1520896 Msa0484210:intron 35.0%
TAAACCAAACACATGCTAAG+TGG - chr3_4:1520936-1520955 Msa0484210:intron 35.0%
AGTTATCAGAATCCAACTTC+AGG - chr3_4:1521044-1521063 Msa0484210:intron 35.0%
GAAAGATACATTCCTGAAGT+TGG + chr3_4:1521059-1521078 None:intergenic 35.0%
GATATTGCCTTGGTTTCAAT+TGG - chr3_4:1521117-1521136 Msa0484210:intron 35.0%
AACTTCTCGATACAGATGTT+TGG - chr3_4:1521321-1521340 Msa0484210:intron 35.0%
TGCTTAGACGCTAAAATTGA+AGG - chr3_4:1521423-1521442 Msa0484210:intron 35.0%
! TTCCCCACATGGATTATTAA+TGG - chr3_4:1521447-1521466 Msa0484210:intron 35.0%
TGGCCATTAATAATCCATGT+GGG + chr3_4:1521453-1521472 None:intergenic 35.0%
AATTTGTGAGAAGAGAAGAG+AGG + chr3_4:1521514-1521533 None:intergenic 35.0%
ATTACATTTGCATCTCCTTC+AGG - chr3_4:1521546-1521565 Msa0484210:CDS 35.0%
TAACATTCCTCTTGATACAG+AGG - chr3_4:1521788-1521807 Msa0484210:CDS 35.0%
TAGTGTTGTAACAGTGAAGG+TGG + chr3_4:1518166-1518185 None:intergenic 40.0%
ACAAGAATTGTCACCTTCAG+AGG - chr3_4:1518262-1518281 Msa0484210:three_prime_UTR 40.0%
GAAATGCTCCTCTTCATCTT+CGG - chr3_4:1518296-1518315 Msa0484210:three_prime_UTR 40.0%
CTTATAGGTCCAATCAGTTG+AGG + chr3_4:1518334-1518353 None:intergenic 40.0%
TGGACCTATAAGCTAATCTC+AGG - chr3_4:1518342-1518361 Msa0484210:CDS 40.0%
CTTGCTTACCTTAAGTTCAC+CGG - chr3_4:1518399-1518418 Msa0484210:intron 40.0%
! ATACATATCGGTGTCTGACA+CGG + chr3_4:1518923-1518942 None:intergenic 40.0%
GACACCGATATGTATTGTGT+TGG - chr3_4:1518928-1518947 Msa0484210:intron 40.0%
ATTGCAAGTTTAGTGCTACG+TGG - chr3_4:1518991-1519010 Msa0484210:intron 40.0%
! ACACAGTGTTGAGTTGTGAT+TGG - chr3_4:1519066-1519085 Msa0484210:intron 40.0%
GTGTACCTCTTCCTTTGATT+GGG - chr3_4:1519217-1519236 Msa0484210:CDS 40.0%
TTGGATCTGTTAACCCCAAA+AGG + chr3_4:1519303-1519322 None:intergenic 40.0%
CAATAGGAGCAAGATGATTC+AGG + chr3_4:1519408-1519427 None:intergenic 40.0%
TTGCTCCTATTGCCTACTTT+CGG - chr3_4:1519416-1519435 Msa0484210:intron 40.0%
AATTACGCAGCGACACAAAA+AGG + chr3_4:1519525-1519544 None:intergenic 40.0%
! GCAAGAGAAGTACAAACAAC+TGG - chr3_4:1519584-1519603 Msa0484210:intron 40.0%
GCAGTTGTTTATTGCTAGCT+TGG - chr3_4:1519611-1519630 Msa0484210:intron 40.0%
AGAATTAGCACTGCTATAGG+AGG + chr3_4:1519655-1519674 None:intergenic 40.0%
GGTAGAATTAGCACTGCTAT+AGG + chr3_4:1519658-1519677 None:intergenic 40.0%
ACATTCAGGCTTATAGCTCA+TGG - chr3_4:1519831-1519850 Msa0484210:intron 40.0%
TGAAAGAAGGGATGGGATAA+GGG + chr3_4:1520039-1520058 None:intergenic 40.0%
CATTCAACTGAAAGAAGGGA+TGG + chr3_4:1520047-1520066 None:intergenic 40.0%
TATGCTTAACACGGTGAGTT+CGG + chr3_4:1520080-1520099 None:intergenic 40.0%
ATGTTGTCAAATAGTGGCGA+TGG - chr3_4:1520262-1520281 Msa0484210:intron 40.0%
CAAAATTTGGTCATAGGCGT+TGG + chr3_4:1520322-1520341 None:intergenic 40.0%
! CGCCTATGACCAAATTTTGA+AGG - chr3_4:1520323-1520342 Msa0484210:CDS 40.0%
TGCTGCCATCCTTCAAAATT+TGG + chr3_4:1520335-1520354 None:intergenic 40.0%
CAAGTCAGGGTTATTGATAG+AGG + chr3_4:1520398-1520417 None:intergenic 40.0%
GCTAACTAACTGCCACATAA+TGG + chr3_4:1520499-1520518 None:intergenic 40.0%
! ATGTGGCAGTTAGTTAGCTT+TGG - chr3_4:1520501-1520520 Msa0484210:CDS 40.0%
TGATGTCTACTTTAGCAGCA+TGG - chr3_4:1520602-1520621 Msa0484210:CDS 40.0%
GCTTGATGGAGTTGTAATCT+CGG + chr3_4:1520655-1520674 None:intergenic 40.0%
TTGCTAGAGACAAAGCAAAG+GGG + chr3_4:1520677-1520696 None:intergenic 40.0%
CTTGCTAGAGACAAAGCAAA+GGG + chr3_4:1520678-1520697 None:intergenic 40.0%
! ACACTGTCTGGAACAAAAAG+AGG - chr3_4:1520746-1520765 Msa0484210:intron 40.0%
CAAGCTTCTTAAAATCACGG+TGG - chr3_4:1520876-1520895 Msa0484210:intron 40.0%
TGTTCCACTTAGCATGTGTT+TGG + chr3_4:1520943-1520962 None:intergenic 40.0%
AAAAAGGACTCACTCTCTCA+TGG - chr3_4:1521080-1521099 Msa0484210:intron 40.0%
ATTCCTCTGCTATAGCCTAT+AGG - chr3_4:1521201-1521220 Msa0484210:intron 40.0%
CTCTACTGTGATATGCCTAT+AGG + chr3_4:1521219-1521238 None:intergenic 40.0%
! TACGTGGAATGTTTTCCTGA+CGG - chr3_4:1521369-1521388 Msa0484210:intron 40.0%
AAATTGAAGGTTTCCCCACA+TGG - chr3_4:1521436-1521455 Msa0484210:intron 40.0%
GGCCATTAATAATCCATGTG+GGG + chr3_4:1521452-1521471 None:intergenic 40.0%
CTGGCCATTAATAATCCATG+TGG + chr3_4:1521454-1521473 None:intergenic 40.0%
! CACATGGATTATTAATGGCC+AGG - chr3_4:1521452-1521471 Msa0484210:intron 40.0%
GAGTGGTGAAGTGGAATTAT+CGG - chr3_4:1521573-1521592 Msa0484210:CDS 40.0%
TGAAGTGGAATTATCGGAGT+TGG - chr3_4:1521579-1521598 Msa0484210:CDS 40.0%
TTCCTCTTGATACAGAGGTT+TGG - chr3_4:1521793-1521812 Msa0484210:exon 40.0%
TGAAGGTGGCCATTGAGAAT+TGG + chr3_4:1518152-1518171 None:intergenic 45.0%
GGAGAACGGTTTAAACGAAC+CGG + chr3_4:1518216-1518235 None:intergenic 45.0%
! TTGTACAAAGGGTTCGGTCT+GGG + chr3_4:1518246-1518265 None:intergenic 45.0%
!! GATGAAGAGGAGCATTTCAG+AGG + chr3_4:1518294-1518313 None:intergenic 45.0%
!! TTCTGGTTCCGAAGATGAAG+AGG + chr3_4:1518307-1518326 None:intergenic 45.0%
CAATCAGTTGAGGAGGTTTC+TGG + chr3_4:1518324-1518343 None:intergenic 45.0%
CAGAAACCTCCTCAACTGAT+TGG - chr3_4:1518322-1518341 Msa0484210:exon 45.0%
ATAGGTCCAATCAGTTGAGG+AGG + chr3_4:1518331-1518350 None:intergenic 45.0%
AAGCTAATCTCAGGAATCGC+CGG - chr3_4:1518351-1518370 Msa0484210:CDS 45.0%
GGTTTCGATGAATCCGATTC+CGG + chr3_4:1518373-1518392 None:intergenic 45.0%
CTTAAGGTAAGCAAGGTACG+AGG + chr3_4:1518394-1518413 None:intergenic 45.0%
CGGTGAACTTAAGGTAAGCA+AGG + chr3_4:1518401-1518420 None:intergenic 45.0%
!! AGTGATTACGCCGTCGTTTT+TGG - chr3_4:1518474-1518493 Msa0484210:intron 45.0%
TAAGCTGCAACGTATGGACT+CGG - chr3_4:1518714-1518733 Msa0484210:intron 45.0%
! CAACGTATGGACTCGGTATT+TGG - chr3_4:1518721-1518740 Msa0484210:intron 45.0%
TAGCCACTCCCAGCAAATTA+TGG - chr3_4:1518745-1518764 Msa0484210:intron 45.0%
! TACATATCGGTGTCTGACAC+GGG + chr3_4:1518922-1518941 None:intergenic 45.0%
AAAGTGGTATTGCATCTGGC+AGG - chr3_4:1519195-1519214 Msa0484210:intron 45.0%
GGTGTACCTCTTCCTTTGAT+TGG - chr3_4:1519216-1519235 Msa0484210:CDS 45.0%
ACCTCTTCCTTTGATTGGGA+TGG - chr3_4:1519221-1519240 Msa0484210:CDS 45.0%
AGATGATTCAGGAAACGCTG+TGG + chr3_4:1519397-1519416 None:intergenic 45.0%
GAGAACCGAAAGTAGGCAAT+AGG + chr3_4:1519424-1519443 None:intergenic 45.0%
AGGACAAGAGAACCGAAAGT+AGG + chr3_4:1519431-1519450 None:intergenic 45.0%
GCAGTGCTAATTCTACCTCA+AGG - chr3_4:1519661-1519680 Msa0484210:intron 45.0%
GGATAAGGGAGTAAGCAAAG+GGG + chr3_4:1520025-1520044 None:intergenic 45.0%
GGGATAAGGGAGTAAGCAAA+GGG + chr3_4:1520026-1520045 None:intergenic 45.0%
TGGGATAAGGGAGTAAGCAA+AGG + chr3_4:1520027-1520046 None:intergenic 45.0%
CTGAAAGAAGGGATGGGATA+AGG + chr3_4:1520040-1520059 None:intergenic 45.0%
CTTACAATTCTCGACTCAGC+AGG + chr3_4:1520110-1520129 None:intergenic 45.0%
!!! AGGATTTTGGCTTTCTGCCA+CGG - chr3_4:1520371-1520390 Msa0484210:CDS 45.0%
CCTTGCTAGAGACAAAGCAA+AGG + chr3_4:1520679-1520698 None:intergenic 45.0%
CCTTTGCTTTGTCTCTAGCA+AGG - chr3_4:1520676-1520695 Msa0484210:CDS 45.0%
! TTTCTGGTGTTCACACTGTC+TGG - chr3_4:1520734-1520753 Msa0484210:intron 45.0%
! TGCCTGTTTGTTAACACGGT+GGG - chr3_4:1520815-1520834 Msa0484210:intron 45.0%
ATCCCACCGTGTTAACAAAC+AGG + chr3_4:1520820-1520839 None:intergenic 45.0%
!! TGGTCAAAACTCGGTTTGGT+GGG + chr3_4:1520844-1520863 None:intergenic 45.0%
!! TTGGTCAAAACTCGGTTTGG+TGG + chr3_4:1520845-1520864 None:intergenic 45.0%
! GAGTTGGTCAAAACTCGGTT+TGG + chr3_4:1520848-1520867 None:intergenic 45.0%
TCCTTGTGAGGATATTGCCT+TGG - chr3_4:1521107-1521126 Msa0484210:intron 45.0%
ACCAAGGCAATATCCTCACA+AGG + chr3_4:1521111-1521130 None:intergenic 45.0%
ATGCCTATAGGCTATAGCAG+AGG + chr3_4:1521207-1521226 None:intergenic 45.0%
GATACAGATGTTTGGACGTG+AGG - chr3_4:1521329-1521348 Msa0484210:intron 45.0%
! TTTCCTGACGGATATCGAAC+AGG - chr3_4:1521381-1521400 Msa0484210:intron 45.0%
GTCCAAACCTCTGTATCAAG+AGG + chr3_4:1521798-1521817 None:intergenic 45.0%
GCGAAGAAACGAGAAGAGGA+AGG + chr3_4:1518192-1518211 None:intergenic 50.0%
CTCTTCTCGTTTCTTCGCAC+CGG - chr3_4:1518194-1518213 Msa0484210:three_prime_UTR 50.0%
! CTTGTACAAAGGGTTCGGTC+TGG + chr3_4:1518247-1518266 None:intergenic 50.0%
TCAGAGGTGGAAACCTCTGA+AGG + chr3_4:1518278-1518297 None:intergenic 50.0%
!! GAAGAGGAGCATTTCAGAGG+TGG + chr3_4:1518291-1518310 None:intergenic 50.0%
ATCTCAGGAATCGCCGGAAT+CGG - chr3_4:1518357-1518376 Msa0484210:CDS 50.0%
!! TGGCCATAATTTGCTGGGAG+TGG + chr3_4:1518751-1518770 None:intergenic 50.0%
GCCATCCCAATCAAAGGAAG+AGG + chr3_4:1519225-1519244 None:intergenic 50.0%
TACGCAGCCATCCCAATCAA+AGG + chr3_4:1519231-1519250 None:intergenic 50.0%
! GCTTGGAAGCACAACCTCAA+TGG - chr3_4:1519338-1519357 Msa0484210:intron 50.0%
AGCACTAGCAGTTGCCATTG+AGG + chr3_4:1519355-1519374 None:intergenic 50.0%
TCTGTCACCACAATCAGCCA+TGG + chr3_4:1520292-1520311 None:intergenic 50.0%
! AGCACCCCGGCATTTTATTG+AGG - chr3_4:1520351-1520370 Msa0484210:CDS 50.0%
GGGTTATTGATAGAGGACCG+TGG + chr3_4:1520391-1520410 None:intergenic 50.0%
GACAAAGCAAAGGGGCTTGA+TGG + chr3_4:1520669-1520688 None:intergenic 50.0%
! GTGCCTGTTTGTTAACACGG+TGG - chr3_4:1520814-1520833 Msa0484210:intron 50.0%
AATCACGGTGGGATGTGCAT+TGG - chr3_4:1520888-1520907 Msa0484210:intron 50.0%
ATCACGGTGGGATGTGCATT+GGG - chr3_4:1520889-1520908 Msa0484210:intron 50.0%
TCTCATGGCTACTCCTTGTG+AGG - chr3_4:1521095-1521114 Msa0484210:intron 50.0%
ACAGATGTTTGGACGTGAGG+CGG - chr3_4:1521332-1521351 Msa0484210:intron 50.0%
GGCGAAGCAATTGGATTACG+TGG - chr3_4:1521353-1521372 Msa0484210:intron 50.0%
GTTCCTGTTCGATATCCGTC+AGG + chr3_4:1521387-1521406 None:intergenic 50.0%
!! CATCTCCTTCAGGTTCTGAG+TGG - chr3_4:1521556-1521575 Msa0484210:CDS 50.0%
CTTCACCACTCAGAACCTGA+AGG + chr3_4:1521564-1521583 None:intergenic 50.0%
!! TCAGGTTCTGAGTGGTGAAG+TGG - chr3_4:1521564-1521583 Msa0484210:CDS 50.0%
CGGTGCGAAGAAACGAGAAG+AGG + chr3_4:1518196-1518215 None:intergenic 55.0%
!! GTCTGGGTTGGTTCGGAGAA+CGG + chr3_4:1518230-1518249 None:intergenic 55.0%
! ACAAAGGGTTCGGTCTGGGT+TGG + chr3_4:1518242-1518261 None:intergenic 55.0%
CATCGGAGCCGGTGAACTTA+AGG + chr3_4:1518410-1518429 None:intergenic 55.0%
TCCGATGTCTTCTGCCCTGT+CGG - chr3_4:1518423-1518442 Msa0484210:intron 55.0%
ATGACGCAACGCCTATGCAC+CGG - chr3_4:1518841-1518860 Msa0484210:intron 55.0%
TTTGAAGGATGGCAGCACCC+CGG - chr3_4:1520338-1520357 Msa0484210:CDS 55.0%
!! GGGTTCGGTCTGGGTTGGTT+CGG + chr3_4:1518237-1518256 None:intergenic 60.0%
AGGGCAGAAGACATCGGAGC+CGG + chr3_4:1518421-1518440 None:intergenic 60.0%
GCCGACAGGGCAGAAGACAT+CGG + chr3_4:1518427-1518446 None:intergenic 60.0%
GATGTCTTCTGCCCTGTCGG+CGG - chr3_4:1518426-1518445 Msa0484210:intron 60.0%
ACGTGAGGCGGCGAAGCAAT+TGG - chr3_4:1521344-1521363 Msa0484210:intron 60.0%
TCGGAGTTGGCACAAGCGTC+TGG - chr3_4:1521592-1521611 Msa0484210:CDS 60.0%
AGCAAGTGCCACCGCCGACA+GGG + chr3_4:1518440-1518459 None:intergenic 65.0%
ATAGTGGCGATGGCGCGCCA+TGG - chr3_4:1520272-1520291 Msa0484210:intron 65.0%
TGGCGCGCCATGGCTGATTG+TGG - chr3_4:1520282-1520301 Msa0484210:intron 65.0%
GTCTTCTGCCCTGTCGGCGG+TGG - chr3_4:1518429-1518448 Msa0484210:intron 70.0%
GAGCAAGTGCCACCGCCGAC+AGG + chr3_4:1518441-1518460 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 1518119 1521849 1518119 ID=Msa0484210;Name=Msa0484210
chr3_4 mRNA 1518119 1521849 1518119 ID=Msa0484210-mRNA-1;Parent=Msa0484210;Name=Msa0484210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=40|0.8|0.83|1|1|1|6|207|356
chr3_4 exon 1518119 1518400 1518119 ID=Msa0484210-mRNA-1:exon:410;Parent=Msa0484210-mRNA-1
chr3_4 exon 1518495 1518632 1518495 ID=Msa0484210-mRNA-1:exon:409;Parent=Msa0484210-mRNA-1
chr3_4 exon 1519201 1519351 1519201 ID=Msa0484210-mRNA-1:exon:408;Parent=Msa0484210-mRNA-1
chr3_4 exon 1520286 1520395 1520286 ID=Msa0484210-mRNA-1:exon:407;Parent=Msa0484210-mRNA-1
chr3_4 exon 1520492 1520751 1520492 ID=Msa0484210-mRNA-1:exon:406;Parent=Msa0484210-mRNA-1
chr3_4 exon 1521473 1521849 1521473 ID=Msa0484210-mRNA-1:exon:405;Parent=Msa0484210-mRNA-1
chr3_4 five_prime_UTR 1521810 1521849 1521810 ID=Msa0484210-mRNA-1:five_prime_utr;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1521473 1521809 1521473 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1520492 1520751 1520492 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1520286 1520395 1520286 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1519201 1519351 1519201 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1518495 1518632 1518495 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 CDS 1518326 1518400 1518326 ID=Msa0484210-mRNA-1:cds;Parent=Msa0484210-mRNA-1
chr3_4 three_prime_UTR 1518119 1518325 1518119 ID=Msa0484210-mRNA-1:three_prime_utr;Parent=Msa0484210-mRNA-1
Gene Sequence

>Msa0484210

ATGGCCACCTTCACTGTTACAACACTATCACCTTCCTCTTCTCGTTTCTTCGCACCGGTTCGTTTAAACCGTTCTCCGAACCAACCCAGACCGAACCCTTTGTACAAGAATTGTCACCTTCAGAGGTTTCCACCTCTGAAATGCTCCTCTTCATCTTCGGAACCAGAAACCTCCTCAACTGATTGGACCTATAAGCTAATCTCAGGAATCGCCGGAATCGGATTCATCGAAACCTCGTACCTTGCTTACCTTAAGTTCACCGGCTCCGATGTCTTCTGCCCTGTCGGCGGTGGCACTTGCTCCAATATACTCAATAGTGATTACGCCGTCGTTTTTGGTGTACCTCTTCCTTTGATTGGGATGGCTGCGTATAGTTTTGTAGCTGCTCTTAGTCTTCAGTTAGCTACAAAGAAGAATTTACCTTTTGGGGTTAACAGATCCAATGCTCAATTAGTATTGCTTGGAAGCACAACCTCAATGGCAACTGCTAGTGCTTATTTTTTGTACATTCTAACCACAGCGTTTCCTGAATCATCTTGCTCCTATTGCCTACTTTCGGTTCTCTTGTCCTTTTCGTTATTCATTCTCACACTCAAGGACATTGGATTGCAAGAGAAGTACAAACAACTGGGTTTGCAGTTGTTTATTGCTAGCTTGGTGATTCTTACATTGAACACCTCCTATAGCAGTGCTAATTCTACCTCAAGCAGCATGGCTAAAATTGAGCTGCCATATTTTGCAACCGAGATTACAACTCCATCAAGCCCCTTTGCTTTGTCTCTAGCAAGGTATTTGCATTCAATAGGAGCTAAAATGTATGGAGCTTTCTGGTGTTCACACTGTCTGGAACAAAAAGAGATGTTTGGACGTGAGGCGGCGAAGCAATTGGATTACGTGGAATGTTTTCCTGACGGATATCGAACAGGAACTAAAATGATCGATGCATGCTTAGACGCTAAAATTGAAGGTTTCCCCACATGGATTATTAATGGCCAGGTTCTGAGTGGTGAAGTGGAATTATCGGAGTTGGCACAAGCGTCTGGTTATAGTGAATCTGATCAACCTAGTTAA

Protein sequence

>Msa0484210

MATFTVTTLSPSSSRFFAPVRLNRSPNQPRPNPLYKNCHLQRFPPLKCSSSSSEPETSSTDWTYKLISGIAGIGFIETSYLAYLKFTGSDVFCPVGGGTCSNILNSDYAVVFGVPLPLIGMAAYSFVAALSLQLATKKNLPFGVNRSNAQLVLLGSTTSMATASAYFLYILTTAFPESSCSYCLLSVLLSFSLFILTLKDIGLQEKYKQLGLQLFIASLVILTLNTSYSSANSTSSSMAKIELPYFATEITTPSSPFALSLARYLHSIGAKMYGAFWCSHCLEQKEMFGREAAKQLDYVECFPDGYRTGTKMIDACLDAKIEGFPTWIINGQVLSGEVELSELAQASGYSESDQPS*