AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945030 MtrunA17_Chr3g0121271 96.855 477 14 1 4 479 22 498 0.0 964
Msa0945030 MtrunA17_Chr8g0378621 71.875 480 127 5 4 479 22 497 0.0 717
Msa0945030 MtrunA17_Chr5g0434591 51.508 431 206 2 3 431 18 447 1.37e-167 482
Msa0945030 MtrunA17_Chr3g0110371 50.115 435 214 2 3 435 19 452 2.11e-166 478
Msa0945030 MtrunA17_Chr1g0161011 51.636 428 204 2 6 431 22 448 4.93e-166 478
Msa0945030 MtrunA17_Chr4g0075031 49.885 433 214 2 5 435 42 473 5.04e-158 458
Msa0945030 MtrunA17_Chr8g0389741 38.009 442 262 3 5 438 25 462 6.91e-119 357
Msa0945030 MtrunA17_Chr6g0487261 36.712 444 264 5 5 436 24 462 3.73e-113 343
Msa0945030 MtrunA17_Chr1g0177171 36.703 455 248 5 8 426 38 488 1.15e-108 331
Msa0945030 MtrunA17_Chr5g0439251 35.955 445 256 5 8 427 25 465 3.43e-102 314
Msa0945030 MtrunA17_Chr4g0034901 35.135 444 270 5 3 432 24 463 1.36e-92 288
Msa0945030 MtrunA17_Chr3g0144531 35.828 441 267 6 3 432 23 458 3.98e-91 285
Msa0945030 MtrunA17_Chr8g0339191 34.180 433 268 7 9 428 30 458 9.80e-90 281
Msa0945030 MtrunA17_Chr7g0234821 33.790 438 266 8 9 428 27 458 1.91e-88 278
Msa0945030 MtrunA17_Chr4g0046311 34.554 437 258 8 8 423 23 452 9.22e-86 271
Msa0945030 MtrunA17_Chr3g0119541 38.110 328 198 3 5 331 23 346 9.54e-81 254
Msa0945030 MtrunA17_Chr4g0043511 34.667 450 257 10 8 428 62 503 1.18e-80 260
Msa0945030 MtrunA17_Chr7g0223961 34.554 437 255 13 8 426 23 446 7.69e-79 253
Msa0945030 MtrunA17_Chr4g0043851 38.318 321 188 4 3 317 22 338 1.23e-75 243
Msa0945030 MtrunA17_Chr1g0189111 37.231 325 197 5 8 331 31 349 8.08e-72 233
Msa0945030 MtrunA17_Chr4g0003281 36.420 324 201 3 9 331 41 360 9.28e-70 227
Msa0945030 MtrunA17_Chr2g0285901 37.658 316 191 4 3 317 19 329 1.03e-69 227
Msa0945030 MtrunA17_Chr2g0321511 36.228 334 205 5 1 333 22 348 3.99e-69 225
Msa0945030 MtrunA17_Chr4g0026321 35.385 325 200 5 5 326 26 343 7.79e-68 222
Msa0945030 MtrunA17_Chr1g0146831 38.019 313 183 6 8 317 31 335 8.73e-67 219
Msa0945030 MtrunA17_Chr1g0155001 36.449 321 200 4 7 326 23 340 1.77e-66 219
Msa0945030 MtrunA17_Chr3g0138741 33.181 437 263 16 8 428 31 454 1.33e-65 219
Msa0945030 MtrunA17_Chr4g0064021 34.862 327 208 3 9 334 27 349 1.77e-65 216
Msa0945030 MtrunA17_Chr1g0148391 30.734 436 274 16 8 428 26 448 5.11e-59 201
Msa0945030 MtrunA17_Chr2g0306311 29.526 464 272 15 6 426 28 479 3.16e-56 195
Msa0945030 MtrunA17_Chr4g0039011 32.903 310 193 5 8 317 42 336 1.21e-55 189
Msa0945030 MtrunA17_Chr7g0250301 31.611 329 211 8 1 328 1 316 7.82e-55 186
Msa0945030 MtrunA17_Chr4g0062771 29.148 446 285 15 1 428 24 456 7.89e-55 191
Msa0945030 MtrunA17_Chr2g0290821 30.046 436 273 16 8 426 28 448 1.96e-54 189
Msa0945030 MtrunA17_Chr4g0039021 32.237 304 195 2 28 331 1 293 2.11e-54 184
Msa0945030 MtrunA17_Chr4g0076581 31.121 437 272 15 8 428 33 456 3.40e-54 189
Msa0945030 MtrunA17_Chr4g0038961 33.538 325 197 9 8 331 23 329 3.70e-54 184
Msa0945030 MtrunA17_Chr4g0038981 33.025 324 200 7 8 331 23 329 8.14e-54 183
Msa0945030 MtrunA17_Chr4g0039071 32.903 310 199 4 8 317 25 325 1.96e-53 184
Msa0945030 MtrunA17_Chr4g0038971 32.407 324 202 7 8 331 23 329 1.46e-52 180
Msa0945030 MtrunA17_Chr4g0069801 28.935 432 278 16 11 426 31 449 2.23e-52 184
Msa0945030 MtrunA17_Chr4g0038941 33.642 324 198 7 8 331 52 358 2.26e-52 181
Msa0945030 MtrunA17_Chr8g0383311 29.047 451 286 17 8 437 43 480 3.67e-52 184
Msa0945030 MtrunA17_Chr2g0294591 32.432 333 201 7 6 331 28 343 3.95e-52 180
Msa0945030 MtrunA17_Chr2g0294601 32.110 327 208 8 6 330 57 371 6.80e-50 175
Msa0945030 MtrunA17_Chr7g0253091 30.000 440 274 18 8 428 26 450 4.78e-49 175
Msa0945030 MtrunA17_Chr6g0461601 29.412 442 277 17 8 428 26 453 5.18e-48 172
Msa0945030 MtrunA17_Chr3g0129341 29.773 440 272 21 8 428 34 455 9.18e-47 169
Msa0945030 MtrunA17_Chr1g0174261 32.028 281 182 4 37 317 1 272 6.16e-45 160
Msa0945030 MtrunA17_Chr3g0105981 29.904 418 261 14 8 410 27 427 7.45e-44 159
Msa0945030 MtrunA17_Chr7g0250321 31.111 270 174 6 8 276 28 286 2.30e-39 144
Msa0945030 MtrunA17_Chr5g0436361 32.915 319 202 9 24 339 53 362 6.70e-39 145
Msa0945030 MtrunA17_Chr5g0447651 50.588 85 42 0 344 428 30 114 3.56e-25 100
Msa0945030 MtrunA17_Chr4g0076131 42.574 101 53 1 328 428 17 112 1.59e-24 98.2
Msa0945030 MtrunA17_Chr8g0381081 47.126 87 46 0 343 429 56 142 1.50e-22 94.7
Msa0945030 MtrunA17_Chr8g0378361 39.695 131 70 2 341 463 27 156 1.71e-22 94.7
Msa0945030 MtrunA17_Chr8g0378371 43.878 98 51 2 334 431 23 116 2.20e-21 89.4
Msa0945030 MtrunA17_Chr4g0040911 40.323 124 68 2 344 467 37 154 3.40e-21 90.9
Msa0945030 MtrunA17_Chr2g0294581 34.307 137 88 1 6 140 74 210 4.04e-21 93.2
Msa0945030 MtrunA17_Chr2g0294581 40.000 105 55 5 227 330 187 284 5.10e-14 72.4
Msa0945030 MtrunA17_Chr3g0096451 42.453 106 60 1 323 428 91 195 4.85e-21 92.4
Msa0945030 MtrunA17_Chr5g0443331 45.361 97 52 1 340 436 104 199 4.90e-20 89.7
Msa0945030 MtrunA17_Chr1g0154991 42.391 92 52 1 339 430 15 105 3.21e-19 83.2
Msa0945030 MtrunA17_Chr4g0043151 43.519 108 56 3 325 431 5 108 3.30e-19 85.5
Msa0945030 MtrunA17_Chr4g0061401 49.438 89 43 2 340 428 20 106 4.73e-19 85.9
Msa0945030 MtrunA17_Chr2g0304061 46.739 92 47 2 344 435 158 247 5.63e-19 87.8
Msa0945030 MtrunA17_Chr5g0401301 45.455 88 47 1 342 428 327 414 1.90e-18 87.4
Msa0945030 MtrunA17_Chr7g0271411 42.353 85 48 1 344 428 160 243 3.24e-18 85.1
Msa0945030 MtrunA17_Chr3g0120401 44.706 85 46 1 344 428 157 240 4.16e-18 83.6
Msa0945030 MtrunA17_Chr4g0076141 43.038 79 45 0 344 422 13 91 7.35e-18 79.0
Msa0945030 MtrunA17_Chr1g0193131 45.783 83 43 2 342 424 418 498 9.70e-18 86.3
Msa0945030 MtrunA17_Chr1g0213651 42.169 83 47 1 344 426 276 357 9.35e-17 81.6
Msa0945030 MtrunA17_Chr5g0419121 41.111 90 50 2 344 431 22 110 7.59e-16 77.4
Msa0945030 MtrunA17_Chr8g0378381 37.500 88 54 1 341 428 29 115 1.13e-15 73.2
Msa0945030 MtrunA17_Chr2g0313891 36.364 99 61 1 331 429 17 113 1.77e-15 72.4
Msa0945030 MtrunA17_Chr8g0380231 47.761 67 34 1 356 422 29 94 4.54e-14 68.2
Msa0945030 MtrunA17_Chr8g0378401 37.805 82 50 1 341 422 29 109 9.43e-14 67.8
Msa0945030 MtrunA17_Chr4g0018771 40.206 97 52 3 233 329 86 176 3.99e-13 68.6
Msa0945030 MtrunA17_Chr4g0018861 43.333 90 43 5 241 329 92 174 7.92e-13 67.8
Msa0945030 MtrunA17_Chr2g0304901 67.442 43 14 0 372 414 186 228 2.85e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945030 AT3G13560.4 63.100 458 166 3 5 461 23 478 0.0 617
Msa0945030 AT3G13560.1 63.100 458 166 3 5 461 23 478 0.0 617
Msa0945030 AT3G13560.2 63.100 458 166 3 5 461 23 478 0.0 617
Msa0945030 AT3G13560.5 63.100 458 166 3 5 461 23 478 0.0 617
Msa0945030 AT3G13560.3 63.100 458 166 3 5 461 23 478 0.0 617
Msa0945030 AT2G01630.1 50.000 440 215 3 6 441 21 459 1.09e-165 477
Msa0945030 AT2G01630.3 50.358 419 205 2 6 422 21 438 1.74e-161 464
Msa0945030 AT1G66250.1 46.250 480 248 6 3 479 27 499 1.68e-158 459
Msa0945030 AT1G11820.2 49.078 434 218 2 3 434 39 471 1.84e-157 457
Msa0945030 AT1G11820.3 49.052 422 212 2 3 422 39 459 2.51e-151 440
Msa0945030 AT2G01630.2 50.136 367 180 2 6 370 21 386 1.51e-136 399
Msa0945030 AT2G05790.1 39.294 453 243 6 3 428 21 468 2.56e-117 353
Msa0945030 AT5G56590.1 39.908 436 245 6 5 428 23 453 4.97e-112 340
Msa0945030 AT1G11820.1 48.036 331 171 1 3 333 39 368 2.90e-108 327
Msa0945030 AT4G29360.1 36.601 459 255 4 2 428 21 475 1.60e-107 330
Msa0945030 AT4G29360.2 36.601 459 255 4 2 428 31 485 3.58e-107 329
Msa0945030 AT5G55180.1 36.818 440 261 5 2 428 21 456 2.23e-105 322
Msa0945030 AT5G55180.2 37.011 435 257 5 2 423 21 451 8.82e-103 315
Msa0945030 AT4G26830.1 36.806 432 257 6 8 428 25 451 8.32e-102 312
Msa0945030 AT4G26830.2 36.721 433 258 6 7 428 28 455 8.33e-102 313
Msa0945030 AT5G24318.1 36.508 441 255 10 6 431 28 458 3.82e-96 298
Msa0945030 AT4G34480.1 38.051 431 250 7 7 428 25 447 9.86e-96 298
Msa0945030 AT2G16230.1 36.323 446 266 5 6 443 23 458 1.13e-94 296
Msa0945030 AT5G24318.2 36.574 432 249 10 6 422 28 449 8.11e-93 289
Msa0945030 AT3G07320.1 33.638 437 266 9 9 428 26 455 1.10e-82 263
Msa0945030 AT4G14080.1 31.982 444 281 7 1 428 35 473 3.36e-81 260
Msa0945030 AT3G55430.1 33.563 435 261 14 8 428 29 449 7.43e-79 253
Msa0945030 AT3G23770.1 32.500 440 273 7 8 428 37 471 4.16e-77 249
Msa0945030 AT4G34480.3 38.889 342 192 7 96 428 3 336 1.14e-72 235
Msa0945030 AT1G32860.1 36.391 327 200 5 8 331 29 350 2.51e-72 235
Msa0945030 AT5G24318.3 36.615 325 184 7 117 428 1 316 5.32e-71 228
Msa0945030 AT1G30080.2 36.977 311 191 3 8 317 36 342 3.97e-69 226
Msa0945030 AT1G30080.1 36.977 311 191 3 8 317 36 342 9.90e-69 225
Msa0945030 AT2G27500.2 34.985 323 205 3 5 326 26 344 3.91e-68 223
Msa0945030 AT2G27500.1 34.985 323 205 3 5 326 26 344 8.39e-68 222
Msa0945030 AT3G15800.1 38.141 312 186 4 9 317 44 351 2.58e-66 219
Msa0945030 AT5G42720.1 37.380 313 191 3 7 317 25 334 3.18e-66 219
Msa0945030 AT4G18340.2 34.925 335 210 5 8 340 34 362 4.44e-66 218
Msa0945030 AT4G18340.1 34.925 335 210 5 8 340 34 362 1.24e-65 217
Msa0945030 AT2G26600.1 34.582 347 215 5 5 343 28 370 7.35e-65 214
Msa0945030 AT4G34480.2 36.170 329 205 4 7 334 25 349 8.85e-65 213
Msa0945030 AT5G24318.4 35.873 315 191 6 6 317 28 334 1.09e-63 211
Msa0945030 AT4G16260.1 37.386 329 194 7 5 333 21 337 3.97e-62 206
Msa0945030 AT5G42100.1 34.154 325 205 6 8 328 27 346 3.59e-61 206
Msa0945030 AT5G42100.2 34.154 325 205 6 8 328 27 346 5.10e-61 206
Msa0945030 AT4G16260.2 37.342 316 186 7 18 333 5 308 1.20e-60 201
Msa0945030 AT3G61810.1 33.531 337 206 6 1 331 48 372 2.29e-60 202
Msa0945030 AT2G39640.1 32.192 438 259 16 4 426 26 440 3.41e-60 206
Msa0945030 AT2G39640.1 31.707 123 80 3 315 434 428 549 7.70e-12 67.8
Msa0945030 AT4G31140.1 31.193 436 271 17 8 428 27 448 3.99e-58 199
Msa0945030 AT3G57270.1 34.862 327 201 7 5 330 24 339 1.26e-55 189
Msa0945030 AT5G20870.1 30.612 441 275 16 8 428 30 459 7.40e-55 191
Msa0945030 AT5G64790.1 29.247 465 289 16 4 448 25 469 9.60e-54 188
Msa0945030 AT5G58090.1 29.680 438 277 16 8 428 22 445 2.11e-53 187
Msa0945030 AT2G27500.3 34.074 270 173 3 58 326 1 266 2.91e-53 182
Msa0945030 AT2G19440.2 31.663 439 267 17 8 428 21 444 3.98e-52 183
Msa0945030 AT2G19440.1 31.663 439 267 17 8 428 21 444 3.98e-52 183
Msa0945030 AT3G24330.1 29.120 443 275 17 8 428 39 464 3.65e-51 181
Msa0945030 AT4G17180.1 30.543 442 272 17 2 428 19 440 4.78e-50 177
Msa0945030 AT2G26600.2 35.165 273 168 4 76 343 8 276 7.85e-50 172
Msa0945030 AT3G57260.1 33.642 324 199 7 8 331 32 339 1.19e-49 173
Msa0945030 AT5G58480.1 30.385 441 267 18 8 429 26 445 1.54e-49 176
Msa0945030 AT3G57260.2 33.642 324 199 7 8 331 48 355 1.67e-49 173
Msa0945030 AT1G64760.1 30.455 440 271 16 8 428 25 448 4.51e-49 175
Msa0945030 AT1G64760.2 30.455 440 271 16 8 428 25 448 4.51e-49 175
Msa0945030 AT3G57240.1 34.516 310 187 8 8 317 35 328 1.41e-48 170
Msa0945030 AT3G46570.1 34.627 335 204 11 8 337 27 351 1.50e-48 171
Msa0945030 AT3G04010.1 29.638 442 273 19 8 428 33 457 1.61e-48 174
Msa0945030 AT5G18220.1 28.635 447 281 18 3 428 26 455 2.57e-47 171
Msa0945030 AT3G55780.1 32.915 319 204 8 21 336 48 359 7.78e-45 161
Msa0945030 AT5G20330.1 29.721 323 213 7 8 328 34 344 7.34e-44 158
Msa0945030 AT5G20340.1 30.462 325 208 9 8 328 43 353 5.11e-43 155
Msa0945030 AT5G20390.1 28.571 329 219 7 3 328 28 343 3.12e-42 153
Msa0945030 AT1G77780.1 29.321 324 217 8 3 326 19 330 8.08e-42 153
Msa0945030 AT1G33220.1 28.239 301 201 6 8 305 34 322 9.26e-41 149
Msa0945030 AT1G77790.1 28.889 315 212 7 5 317 27 331 2.38e-39 145
Msa0945030 AT5G20560.1 26.984 315 217 7 5 317 31 334 1.51e-34 132
Msa0945030 AT5G35740.1 47.191 89 46 1 341 428 27 115 4.18e-26 102
Msa0945030 AT1G66870.2 37.313 134 67 2 307 428 9 137 4.64e-24 97.8
Msa0945030 AT2G04910.2 48.193 83 43 0 344 426 15 97 7.33e-24 96.3
Msa0945030 AT1G66870.1 44.944 89 49 0 340 428 22 110 3.56e-23 94.7
Msa0945030 AT5G67460.1 48.864 88 45 0 344 431 293 380 1.38e-22 99.8
Msa0945030 AT4G13600.1 40.541 111 64 2 344 454 61 169 8.96e-22 94.4
Msa0945030 AT2G30933.1 46.154 91 48 1 342 432 80 169 1.63e-21 93.6
Msa0945030 AT5G67460.2 51.899 79 38 0 344 422 293 371 3.29e-21 95.5
Msa0945030 AT1G66852.1 43.478 92 51 1 337 428 19 109 3.77e-21 89.0
Msa0945030 AT1G18650.1 43.750 96 53 1 338 433 15 109 6.66e-21 90.5
Msa0945030 AT1G66855.1 41.573 89 52 0 341 429 23 111 7.01e-21 88.2
Msa0945030 AT5G63240.1 40.230 87 50 1 344 428 40 126 1.31e-20 88.2
Msa0945030 AT2G04910.1 45.679 81 44 0 343 423 14 94 1.39e-20 87.8
Msa0945030 AT1G18650.2 43.750 96 53 1 338 433 15 109 1.58e-20 87.8
Msa0945030 AT3G58100.1 39.362 94 57 0 344 437 41 134 3.41e-20 88.6
Msa0945030 AT3G58100.2 39.362 94 57 0 344 437 117 210 5.48e-20 89.7
Msa0945030 AT1G29380.3 44.444 90 49 1 344 433 148 236 4.11e-19 87.4
Msa0945030 AT4G16165.1 38.710 93 57 0 337 429 19 111 4.62e-19 83.2
Msa0945030 AT2G30933.2 46.914 81 42 1 342 422 80 159 6.11e-19 84.3
Msa0945030 AT2G30933.3 46.914 81 42 1 342 422 80 159 6.11e-19 84.3
Msa0945030 AT4G05430.1 43.158 95 53 1 343 436 22 116 6.64e-19 83.6
Msa0945030 AT4G05430.3 43.158 95 53 1 343 436 47 141 6.90e-19 84.3
Msa0945030 AT1G29380.1 45.783 83 44 1 344 426 148 229 1.32e-18 87.0
Msa0945030 AT1G09460.1 44.792 96 50 2 340 435 133 225 4.25e-18 85.9
Msa0945030 AT5G61130.1 41.758 91 52 1 338 428 15 104 1.08e-17 82.0
Msa0945030 AT1G79480.1 42.529 87 49 1 340 426 307 392 1.37e-17 85.1
Msa0945030 AT1G79480.2 42.529 87 49 1 340 426 306 391 1.45e-17 85.1
Msa0945030 AT4G09462.1 38.889 90 54 1 340 429 25 113 1.57e-17 79.0
Msa0945030 AT4G09465.1 37.500 96 59 1 334 429 21 115 2.73e-17 78.2
Msa0945030 AT4G09464.1 37.500 96 59 1 334 429 21 115 2.84e-17 78.2
Msa0945030 AT4G09467.1 37.500 96 59 1 334 429 21 115 2.84e-17 78.2
Msa0945030 AT4G05430.2 42.500 80 46 0 343 422 47 126 2.25e-16 75.9
Msa0945030 AT1G29380.4 43.902 82 45 1 344 425 148 228 2.30e-16 78.6
Msa0945030 AT1G29380.2 43.902 82 45 1 344 425 148 228 2.30e-16 78.6
Msa0945030 AT2G43670.1 37.079 89 54 1 340 428 31 117 3.74e-16 75.1
Msa0945030 AT5G63225.1 39.326 89 53 1 340 428 21 108 5.87e-16 74.3
Msa0945030 AT4G09466.1 35.417 96 61 1 334 429 21 115 1.06e-15 73.6
Msa0945030 AT1G69295.1 42.222 90 50 2 336 425 13 100 1.81e-15 75.9
Msa0945030 AT4G09090.1 38.202 89 54 1 340 428 27 114 1.95e-15 72.8
Msa0945030 AT5G63250.1 35.185 108 62 2 323 428 27 128 2.42e-15 73.2
Msa0945030 AT1G69295.2 43.373 83 45 2 343 425 16 96 1.66e-14 73.2
Msa0945030 AT1G26450.1 45.679 81 42 2 336 416 13 91 1.70e-14 72.4
Msa0945030 AT2G03505.4 35.106 94 58 2 340 431 17 109 2.32e-14 71.2
Msa0945030 AT2G03505.1 35.106 94 58 2 340 431 17 109 2.32e-14 71.2
Msa0945030 AT2G03505.2 35.106 94 58 2 340 431 17 109 2.32e-14 71.2
Msa0945030 AT2G03505.3 36.145 83 52 1 340 422 17 98 2.36e-14 70.1
Msa0945030 AT2G29735.1 38.462 91 53 2 340 428 27 116 8.72e-14 68.2
Msa0945030 AT1G78520.1 35.227 88 55 1 341 428 29 114 1.25e-13 67.8
Msa0945030 AT5G53600.1 32.184 87 57 1 342 428 27 111 3.91e-13 66.2
Msa0945030 AT5G53610.1 32.584 89 58 1 340 428 24 110 8.54e-13 65.1
Msa0945030 AT5G63230.1 35.955 89 56 1 340 428 22 109 9.65e-13 65.1
Msa0945030 AT5G08000.1 37.363 91 56 1 338 428 15 104 5.48e-12 65.1
Msa0945030 AT5G08000.2 37.209 86 53 1 343 428 39 123 2.14e-11 63.9
Msa0945030 AT1G13830.2 35.632 87 53 2 344 428 35 120 2.44e-11 63.5
Msa0945030 AT1G13830.1 35.632 87 53 2 344 428 21 106 2.55e-11 63.2
Msa0945030 AT2G43660.2 32.558 86 58 0 343 428 34 119 6.95e-11 60.1
Msa0945030 AT2G43660.1 32.558 86 58 0 343 428 33 118 7.63e-11 60.1

Find 115 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTTGTATGGTGTATT+TGG 0.202706 6_3:+23104374 Msa0945030:three_prime_UTR
CAATGTTATCCCCTTTCTTT+TGG 0.205900 6_3:+23104566 Msa0945030:three_prime_UTR
TTAAATGCTCACCCTTATTA+TGG 0.209582 6_3:+23102383 Msa0945030:CDS
CTCTTCTACTAGTCTACTTT+TGG 0.219586 6_3:+23104211 Msa0945030:CDS
ATTGCAATTGCAAGCTAAAA+AGG 0.226732 6_3:-23104265 None:intergenic
CCATCTTGTATGGTGTATTT+GGG 0.257093 6_3:+23104375 Msa0945030:three_prime_UTR
CCTTTAGTATATCCATAATA+AGG 0.275337 6_3:-23102395 None:intergenic
AGGAGAGTACTTAATGATTC+AGG 0.289249 6_3:+23102674 Msa0945030:CDS
CTTCAACGCCGGTGTTTGAT+AGG 0.307975 6_3:-23101995 None:intergenic
CATTAAATTTCAATGATATA+CGG 0.312439 6_3:+23102555 Msa0945030:CDS
CCTAATCAAATTATTATTGT+AGG 0.316111 6_3:-23102654 None:intergenic
CGGATCATTGTCACAGAAAC+TGG 0.324873 6_3:+23102575 Msa0945030:CDS
GAAACTGGTTGGCCACATTT+AGG 0.331009 6_3:+23102590 Msa0945030:CDS
CCAGCACCAATAGGACTTAC+AGG 0.369992 6_3:-23104152 None:intergenic
ACAAGAACACGAGCAACATT+TGG 0.372068 6_3:-23102167 None:intergenic
TGAAAAGATGGAAGCTGGTT+TGG 0.374705 6_3:+23102907 Msa0945030:CDS
GATTTGTGTTCCATCTTGTA+TGG 0.386913 6_3:+23104365 Msa0945030:three_prime_UTR
CCTACAATAATAATTTGATT+AGG 0.390318 6_3:+23102654 Msa0945030:CDS
CTGGGCTTGCGGAGAAGGCC+GGG 0.392967 6_3:+23102931 Msa0945030:CDS
ACCTATATCTGAAAGACATT+GGG 0.397818 6_3:+23102769 Msa0945030:CDS
AATTGCAATTCAATGGTCAT+TGG 0.398253 6_3:+23104279 Msa0945030:three_prime_UTR
GACGAAGAAATATTGAGAAT+TGG 0.401023 6_3:+23102035 Msa0945030:CDS
ACTGGGCTTGCGGAGAAGGC+CGG 0.403590 6_3:+23102930 Msa0945030:CDS
TTGGACTGGGCTTGCGGAGA+AGG 0.404683 6_3:+23102926 Msa0945030:CDS
AAACTAGCGTCCGGTTCGTT+AGG 0.408986 6_3:-23102617 None:intergenic
TAATGTGATCTAATATCAAC+TGG 0.412430 6_3:-23101820 None:intergenic
CGAAGTAAAGCATATTCAAT+TGG 0.412645 6_3:-23102431 None:intergenic
AGATGGAAGCTGGTTTGGAC+TGG 0.413864 6_3:+23102912 Msa0945030:CDS
TTTGGACCTGTAAGTCCTAT+TGG 0.417869 6_3:+23104146 Msa0945030:CDS
GTAGAAGGAGGAAAAGGCTT+AGG 0.421008 6_3:-23102281 None:intergenic
TTTGATGAAGATAAGAGAAT+AGG 0.422141 6_3:+23102746 Msa0945030:CDS
GAGTTAAAAGTGGCTGTAGA+AGG 0.422615 6_3:-23102296 None:intergenic
AGCTTGCAATTGCAATTCAA+TGG 0.424865 6_3:+23104272 Msa0945030:three_prime_UTR
ATAATCATTATAAGCATAAG+AGG 0.428971 6_3:-23103017 None:intergenic
AACTTGAGCACGGGTGGTGA+TGG 0.431835 6_3:+23104104 Msa0945030:CDS
AATGATTCATTCCAAAAGAA+AGG 0.436783 6_3:-23104577 None:intergenic
TATGATGTAGGTGCATTTGT+GGG 0.437475 6_3:+23101852 Msa0945030:CDS
AAACTTTGACGCGGAAATGA+AGG 0.439597 6_3:-23102232 None:intergenic
GTAATTTACACTCTCAAGAT+AGG 0.446557 6_3:+23104404 Msa0945030:three_prime_UTR
CAAGAACACGAGCAACATTT+GGG 0.450275 6_3:-23102166 None:intergenic
ATGATTCATTCCAAAAGAAA+GGG 0.451155 6_3:-23104576 None:intergenic
AACTGTGCAGCTATTCAAGC+TGG 0.464051 6_3:+23102956 Msa0945030:CDS
CCCCAATGTCTTTCAGATAT+AGG 0.465833 6_3:-23102770 None:intergenic
CCTGTAAGTCCTATTGGTGC+TGG 0.466516 6_3:+23104152 Msa0945030:CDS
TGACAGTATGTTTGATGCTA+TGG 0.468256 6_3:+23102505 Msa0945030:CDS
GGCACTGTGAAGATGATTCA+TGG 0.472035 6_3:-23102195 None:intergenic
GATGGAAGCTGGTTTGGACT+GGG 0.472061 6_3:+23102913 Msa0945030:CDS
TTATTTATCATGTATGATGT+AGG 0.473500 6_3:+23101840 Msa0945030:exon
GTATGATGTAGGTGCATTTG+TGG 0.481676 6_3:+23101851 Msa0945030:CDS
CTTTAGTATATCCATAATAA+GGG 0.487078 6_3:-23102394 None:intergenic
AATTCTCAATATTTCTTCGT+CGG 0.489082 6_3:-23102033 None:intergenic
GACCTATATCTGAAAGACAT+TGG 0.495328 6_3:+23102768 Msa0945030:CDS
ATCCATGTTGCAGCCACTGA+TGG 0.500653 6_3:-23102065 None:intergenic
TTCTCCTAGTCAACCGATGA+TGG 0.501901 6_3:+23102697 Msa0945030:CDS
ATGAAGGTTTGAAGCAACTA+AGG 0.507056 6_3:-23102216 None:intergenic
ACCGGCGTTGAAGTCCTTGT+TGG 0.507660 6_3:+23102005 Msa0945030:CDS
TTCAACGCCGGTGTTTGATA+GGG 0.509490 6_3:-23101994 None:intergenic
AACTTCAATCCAGCACCAAT+AGG 0.509537 6_3:-23104161 None:intergenic
AGTTTCGACGCCTCAGTCCA+TGG 0.513215 6_3:+23102250 Msa0945030:CDS
AGGCTTAGGGATTAAATCCA+TGG 0.514185 6_3:-23102267 None:intergenic
TGGCGCGGACGCTGAAAAGA+TGG 0.514463 6_3:+23102895 Msa0945030:CDS
TCATAACGGAATAATGTGTT+CGG 0.519391 6_3:-23102485 None:intergenic
GAATAGCTGCACAGTTTGCC+CGG 0.523260 6_3:-23102949 None:intergenic
CCTTATTATGGATATACTAA+AGG 0.527242 6_3:+23102395 Msa0945030:CDS
CATGGATCATGTGTATATGC+AGG 0.527638 6_3:+23103967 Msa0945030:CDS
TAGAAGAACTAAAACTCAAA+GGG 0.531024 6_3:-23102826 None:intergenic
TTAGAAGAACTAAAACTCAA+AGG 0.532144 6_3:-23102827 None:intergenic
CCCAAATACACCATACAAGA+TGG 0.532937 6_3:-23104375 None:intergenic
CATCAAACATACTGTCATAA+CGG 0.533138 6_3:-23102499 None:intergenic
GCTGGTTTGGACTGGGCTTG+CGG 0.533574 6_3:+23102920 Msa0945030:CDS
ACTTGAGCACGGGTGGTGAT+GGG 0.535349 6_3:+23104105 Msa0945030:CDS
GACGCTGAAAAGATGGAAGC+TGG 0.535957 6_3:+23102902 Msa0945030:CDS
AATATCACAACAATAGCAGT+TGG 0.540102 6_3:+23102122 Msa0945030:CDS
CGTTAACTTACTTGGATCCT+CGG 0.542447 6_3:-23103101 None:intergenic
TAGAAGGAGGAAAAGGCTTA+GGG 0.544622 6_3:-23102280 None:intergenic
GTGGCTGTAGAAGGAGGAAA+AGG 0.545922 6_3:-23102287 None:intergenic
CTTCGTCGGTGACGCCAACA+AGG 0.546156 6_3:-23102019 None:intergenic
TTTAGGTGGACCTAACGAAC+CGG 0.547039 6_3:+23102607 Msa0945030:CDS
CTCCATCAGTGGCTGCAACA+TGG 0.549987 6_3:+23102063 Msa0945030:CDS
CATCTTGTATGGTGTATTTG+GGG 0.554582 6_3:+23104376 Msa0945030:three_prime_UTR
GCCAACAAGGACTTCAACGC+CGG 0.557159 6_3:-23102006 None:intergenic
GCAACAATATTTGAAGCTGA+TGG 0.558424 6_3:-23101906 None:intergenic
ATCAGTTCTAACTTGAGCAC+GGG 0.563571 6_3:+23104095 Msa0945030:intron
TTAAAAGTGGCTGTAGAAGG+AGG 0.569222 6_3:-23102293 None:intergenic
CTGTGAAGATGATTCATGGC+AGG 0.571275 6_3:-23102191 None:intergenic
AACAATAGCAGTTGGAAGTG+AGG 0.580046 6_3:+23102130 Msa0945030:CDS
ATAGCCATCATCGGTTGACT+AGG 0.580777 6_3:-23102701 None:intergenic
ATCAAACAATTCATATAAGT+AGG 0.587450 6_3:-23102729 None:intergenic
AATTGAGTTAGAGTGTTGCA+AGG 0.587780 6_3:+23101784 None:intergenic
TATCAGTTCTAACTTGAGCA+CGG 0.590597 6_3:+23104094 Msa0945030:intron
GTTCCATGATGAGTTAAAAG+TGG 0.590802 6_3:-23102306 None:intergenic
TAGAAGAGAATGCATAGTGA+AGG 0.600654 6_3:-23104196 None:intergenic
CATTATAAGCATAAGAGGCA+TGG 0.602398 6_3:-23103012 None:intergenic
ACATCATTGGGGAAATAGCA+AGG 0.603276 6_3:-23102983 None:intergenic
ACTGGTTGGCCACATTTAGG+TGG 0.605390 6_3:+23102593 Msa0945030:CDS
TCATTGTCACAGAAACTGGT+TGG 0.608595 6_3:+23102579 Msa0945030:CDS
TATGGATATACTAAAGGAGA+CGG 0.611436 6_3:+23102401 Msa0945030:CDS
ACTGTGCAGCTATTCAAGCT+GGG 0.611715 6_3:+23102957 Msa0945030:CDS
ATTGTTGTGATATTTGTGTG+AGG 0.612136 6_3:-23102113 None:intergenic
CAGTATGTTTGATGCTATGG+TGG 0.617131 6_3:+23102508 Msa0945030:CDS
AGTTCTAACTTGAGCACGGG+TGG 0.632909 6_3:+23104098 Msa0945030:intron
TAGGTATTAATAGCCATCAT+CGG 0.632912 6_3:-23102710 None:intergenic
TTGTGTGGCTAAAGATGGCG+CGG 0.639037 6_3:+23102880 Msa0945030:CDS
ATGATGTAGGTGCATTTGTG+GGG 0.642405 6_3:+23101853 Msa0945030:CDS
GATCATGTGTATATGCAGGA+AGG 0.650405 6_3:+23103971 Msa0945030:CDS
TGATTCATTCCAAAAGAAAG+GGG 0.659242 6_3:-23104575 None:intergenic
TCGTTAGGTCCACCTAAATG+TGG 0.659828 6_3:-23102602 None:intergenic
AATTGGAGAATCTCCATCAG+TGG 0.660534 6_3:+23102052 Msa0945030:CDS
CCTATATCTGAAAGACATTG+GGG 0.668424 6_3:+23102770 Msa0945030:CDS
CTACAAGCCCTATCAAACAC+CGG 0.677952 6_3:+23101987 Msa0945030:CDS
GGGATTAAATCCATGGACTG+AGG 0.686707 6_3:-23102260 None:intergenic
TGATGTAGGTGCATTTGTGG+GGG 0.706821 6_3:+23101854 Msa0945030:CDS
TACAGCTATGATAACTACCG+AGG 0.729167 6_3:+23103084 Msa0945030:CDS
GCAGTAGAAGACAACAAACG+AGG 0.752143 6_3:+23104458 Msa0945030:three_prime_UTR
GAGGCGTCGAAACTTTGACG+CGG 0.779048 6_3:-23102241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTATATAAAACTAATAT+TGG + chr6_3:23104056-23104075 Msa0945030:intron 10.0%
!!! GTTTTATATTTTCTTTTTAA+AGG + chr6_3:23104319-23104338 Msa0945030:three_prime_UTR 10.0%
!! CATTAAATTTCAATGATATA+CGG + chr6_3:23102555-23102574 Msa0945030:CDS 15.0%
!!! TAAAATTTGTTAGCTTATTT+AGG + chr6_3:23103305-23103324 Msa0945030:intron 15.0%
!! TTATTTATCATGTATGATGT+AGG + chr6_3:23101840-23101859 Msa0945030:exon 20.0%
!! CTTTAGTATATCCATAATAA+GGG - chr6_3:23102397-23102416 None:intergenic 20.0%
!! CCTAATCAAATTATTATTGT+AGG - chr6_3:23102657-23102676 None:intergenic 20.0%
!! CCTACAATAATAATTTGATT+AGG + chr6_3:23102654-23102673 Msa0945030:CDS 20.0%
!! ATCAAACAATTCATATAAGT+AGG - chr6_3:23102732-23102751 None:intergenic 20.0%
!! ATAATCATTATAAGCATAAG+AGG - chr6_3:23103020-23103039 None:intergenic 20.0%
!! TTATCAAAAAATGAATAGTG+TGG + chr6_3:23103039-23103058 Msa0945030:CDS 20.0%
!! TATCAAAAAATGAATAGTGT+GGG + chr6_3:23103040-23103059 Msa0945030:CDS 20.0%
!! CATTTAATCTGAATATTTCA+TGG + chr6_3:23103813-23103832 Msa0945030:intron 20.0%
!! TTAGTGATAATCACAAAAAA+AGG - chr6_3:23103859-23103878 None:intergenic 20.0%
!! TCTATACAAATCTTCAATAT+AGG - chr6_3:23103908-23103927 None:intergenic 20.0%
! TAATGTGATCTAATATCAAC+TGG - chr6_3:23101823-23101842 None:intergenic 25.0%
! AATTCTCAATATTTCTTCGT+CGG - chr6_3:23102036-23102055 None:intergenic 25.0%
! CCTTTAGTATATCCATAATA+AGG - chr6_3:23102398-23102417 None:intergenic 25.0%
! CCTTATTATGGATATACTAA+AGG + chr6_3:23102395-23102414 Msa0945030:CDS 25.0%
!! AATTTTCTTTGTTGAAGGAA+GGG - chr6_3:23102459-23102478 None:intergenic 25.0%
!! TCAACAATTTTCTTTGTTGA+AGG - chr6_3:23102464-23102483 None:intergenic 25.0%
! TTTGATGAAGATAAGAGAAT+AGG + chr6_3:23102746-23102765 Msa0945030:CDS 25.0%
! TAGAAGAACTAAAACTCAAA+GGG - chr6_3:23102829-23102848 None:intergenic 25.0%
! TTAGAAGAACTAAAACTCAA+AGG - chr6_3:23102830-23102849 None:intergenic 25.0%
!! AGTTCTTCTAACAAGATTTT+CGG + chr6_3:23102839-23102858 Msa0945030:CDS 25.0%
! GGTTATAAGTAATTACTTGT+TGG + chr6_3:23103145-23103164 Msa0945030:intron 25.0%
! TGCAAGTTACTTGAAAAAAA+TGG + chr6_3:23103180-23103199 Msa0945030:intron 25.0%
! ACTTGAAAAAAATGGTGTTT+AGG + chr6_3:23103188-23103207 Msa0945030:intron 25.0%
! GTGGTTATATGACATTATAA+AGG - chr6_3:23103428-23103447 None:intergenic 25.0%
!! AGAATAATTTGAAAAGCATG+TGG - chr6_3:23103447-23103466 None:intergenic 25.0%
!!! TTGAAAATTACGTCACTTTT+GGG - chr6_3:23103523-23103542 None:intergenic 25.0%
!! TCATTTTCTCAAATCATTAC+CGG - chr6_3:23103601-23103620 None:intergenic 25.0%
!! TCATTTTCTCAAATCATAAC+CGG - chr6_3:23103675-23103694 None:intergenic 25.0%
!! GAATATTTCATGGTTTTTCA+AGG + chr6_3:23103823-23103842 Msa0945030:intron 25.0%
!! TAATGAGTACTTTGTTATAC+AGG + chr6_3:23103943-23103962 Msa0945030:intron 25.0%
! GCAACTCTAATTCATTATAA+TGG - chr6_3:23104021-23104040 None:intergenic 25.0%
!! TTAAAGGTTTTCTGTTAGTT+TGG + chr6_3:23104335-23104354 Msa0945030:three_prime_UTR 25.0%
! ATGATTCATTCCAAAAGAAA+GGG - chr6_3:23104579-23104598 None:intergenic 25.0%
! AATGATTCATTCCAAAAGAA+AGG - chr6_3:23104580-23104599 None:intergenic 25.0%
GACGAAGAAATATTGAGAAT+TGG + chr6_3:23102035-23102054 Msa0945030:CDS 30.0%
ATTGTTGTGATATTTGTGTG+AGG - chr6_3:23102116-23102135 None:intergenic 30.0%
AATATCACAACAATAGCAGT+TGG + chr6_3:23102122-23102141 Msa0945030:CDS 30.0%
AGTTTGTGTTCTTCAAAAAC+TGG - chr6_3:23102352-23102371 None:intergenic 30.0%
TTAAATGCTCACCCTTATTA+TGG + chr6_3:23102383-23102402 Msa0945030:CDS 30.0%
TATGGATATACTAAAGGAGA+CGG + chr6_3:23102401-23102420 Msa0945030:CDS 30.0%
CGAAGTAAAGCATATTCAAT+TGG - chr6_3:23102434-23102453 None:intergenic 30.0%
! CAATTTTCTTTGTTGAAGGA+AGG - chr6_3:23102460-23102479 None:intergenic 30.0%
! TCATAACGGAATAATGTGTT+CGG - chr6_3:23102488-23102507 None:intergenic 30.0%
CATCAAACATACTGTCATAA+CGG - chr6_3:23102502-23102521 None:intergenic 30.0%
TAGGTATTAATAGCCATCAT+CGG - chr6_3:23102713-23102732 None:intergenic 30.0%
ACCTATATCTGAAAGACATT+GGG + chr6_3:23102769-23102788 Msa0945030:CDS 30.0%
!!! GGACTTTTTTACACTACTAA+TGG + chr6_3:23102791-23102810 Msa0945030:CDS 30.0%
TATAACAGCGTTAACTTACT+TGG - chr6_3:23103112-23103131 None:intergenic 30.0%
CTGTTATAATTAGTTGCAGT+TGG + chr6_3:23103124-23103143 Msa0945030:intron 30.0%
TACACCATTGCATAATTTAG+AGG + chr6_3:23103468-23103487 Msa0945030:intron 30.0%
AAGTCCTCTAAATTATGCAA+TGG - chr6_3:23103475-23103494 None:intergenic 30.0%
!! GTTGAAAATTACGTCACTTT+TGG - chr6_3:23103524-23103543 None:intergenic 30.0%
ATCACAAAAAAAGGTGAACT+GGG - chr6_3:23103850-23103869 None:intergenic 30.0%
AATCACAAAAAAAGGTGAAC+TGG - chr6_3:23103851-23103870 None:intergenic 30.0%
! AGCTTTTCTTCTATTGCATT+TGG + chr6_3:23104128-23104147 Msa0945030:CDS 30.0%
!!! CTAAAAAGGCATCATTTTTC+TGG - chr6_3:23104254-23104273 None:intergenic 30.0%
ATTGCAATTGCAAGCTAAAA+AGG - chr6_3:23104268-23104287 None:intergenic 30.0%
AATTGCAATTCAATGGTCAT+TGG + chr6_3:23104279-23104298 Msa0945030:three_prime_UTR 30.0%
GTAATTTACACTCTCAAGAT+AGG + chr6_3:23104404-23104423 Msa0945030:three_prime_UTR 30.0%
TGATTCATTCCAAAAGAAAG+GGG - chr6_3:23104578-23104597 None:intergenic 30.0%
TATGATGTAGGTGCATTTGT+GGG + chr6_3:23101852-23101871 Msa0945030:CDS 35.0%
! GCAACAATATTTGAAGCTGA+TGG - chr6_3:23101909-23101928 None:intergenic 35.0%
! ATGAAGGTTTGAAGCAACTA+AGG - chr6_3:23102219-23102238 None:intergenic 35.0%
GTTCCATGATGAGTTAAAAG+TGG - chr6_3:23102309-23102328 None:intergenic 35.0%
TTGTGTTCTTCAAAAACTGG+AGG - chr6_3:23102349-23102368 None:intergenic 35.0%
TGACAGTATGTTTGATGCTA+TGG + chr6_3:23102505-23102524 Msa0945030:CDS 35.0%
!! AGGAGAGTACTTAATGATTC+AGG + chr6_3:23102674-23102693 Msa0945030:CDS 35.0%
GACCTATATCTGAAAGACAT+TGG + chr6_3:23102768-23102787 Msa0945030:CDS 35.0%
CCTATATCTGAAAGACATTG+GGG + chr6_3:23102770-23102789 Msa0945030:CDS 35.0%
! TTCTTCGAAGTCTTTTTGTG+TGG + chr6_3:23102865-23102884 Msa0945030:CDS 35.0%
! TCTTTTTGTGTGGCTAAAGA+TGG + chr6_3:23102875-23102894 Msa0945030:CDS 35.0%
CATTATAAGCATAAGAGGCA+TGG - chr6_3:23103015-23103034 None:intergenic 35.0%
CAAAAAATGAATAGTGTGGG+AGG + chr6_3:23103043-23103062 Msa0945030:CDS 35.0%
! CTCAACAAGTAGCTTCTTTT+AGG + chr6_3:23103234-23103253 Msa0945030:intron 35.0%
AGTGCTTCATAGCTCATTAA+CGG - chr6_3:23103546-23103565 None:intergenic 35.0%
CTGAATGTAACCTTATGTGT+CGG + chr6_3:23103700-23103719 Msa0945030:intron 35.0%
! GTACTTTGTTATACAGGTCA+TGG + chr6_3:23103949-23103968 Msa0945030:intron 35.0%
! TATCAGTTCTAACTTGAGCA+CGG + chr6_3:23104094-23104113 Msa0945030:intron 35.0%
TAGAAGAGAATGCATAGTGA+AGG - chr6_3:23104199-23104218 None:intergenic 35.0%
!! CTCTTCTACTAGTCTACTTT+TGG + chr6_3:23104211-23104230 Msa0945030:CDS 35.0%
AGCTTGCAATTGCAATTCAA+TGG + chr6_3:23104272-23104291 Msa0945030:three_prime_UTR 35.0%
GATTTGTGTTCCATCTTGTA+TGG + chr6_3:23104365-23104384 Msa0945030:three_prime_UTR 35.0%
TCCATCTTGTATGGTGTATT+TGG + chr6_3:23104374-23104393 Msa0945030:three_prime_UTR 35.0%
CCATCTTGTATGGTGTATTT+GGG + chr6_3:23104375-23104394 Msa0945030:three_prime_UTR 35.0%
CATCTTGTATGGTGTATTTG+GGG + chr6_3:23104376-23104395 Msa0945030:three_prime_UTR 35.0%
! CAATGTTATCCCCTTTCTTT+TGG + chr6_3:23104566-23104585 Msa0945030:three_prime_UTR 35.0%
GTATGATGTAGGTGCATTTG+TGG + chr6_3:23101851-23101870 Msa0945030:CDS 40.0%
ATGATGTAGGTGCATTTGTG+GGG + chr6_3:23101853-23101872 Msa0945030:CDS 40.0%
AATTGGAGAATCTCCATCAG+TGG + chr6_3:23102052-23102071 Msa0945030:CDS 40.0%
AACAATAGCAGTTGGAAGTG+AGG + chr6_3:23102130-23102149 Msa0945030:CDS 40.0%
CAAGAACACGAGCAACATTT+GGG - chr6_3:23102169-23102188 None:intergenic 40.0%
ACAAGAACACGAGCAACATT+TGG - chr6_3:23102170-23102189 None:intergenic 40.0%
AAACTTTGACGCGGAAATGA+AGG - chr6_3:23102235-23102254 None:intergenic 40.0%
AGGCTTAGGGATTAAATCCA+TGG - chr6_3:23102270-23102289 None:intergenic 40.0%
TAGAAGGAGGAAAAGGCTTA+GGG - chr6_3:23102283-23102302 None:intergenic 40.0%
TTAAAAGTGGCTGTAGAAGG+AGG - chr6_3:23102296-23102315 None:intergenic 40.0%
GAGTTAAAAGTGGCTGTAGA+AGG - chr6_3:23102299-23102318 None:intergenic 40.0%
!!! CAGCCACTTTTAACTCATCA+TGG + chr6_3:23102303-23102322 Msa0945030:CDS 40.0%
TCTTCAAAAACTGGAGGACT+TGG - chr6_3:23102343-23102362 None:intergenic 40.0%
CAGTATGTTTGATGCTATGG+TGG + chr6_3:23102508-23102527 Msa0945030:CDS 40.0%
TCATTGTCACAGAAACTGGT+TGG + chr6_3:23102579-23102598 Msa0945030:CDS 40.0%
! GCATTTTCTAAACTAGCGTC+CGG - chr6_3:23102629-23102648 None:intergenic 40.0%
CCCCAATGTCTTTCAGATAT+AGG - chr6_3:23102773-23102792 None:intergenic 40.0%
TGAAAAGATGGAAGCTGGTT+TGG + chr6_3:23102907-23102926 Msa0945030:CDS 40.0%
ACATCATTGGGGAAATAGCA+AGG - chr6_3:23102986-23103005 None:intergenic 40.0%
! CATGGCTTTTCACATCATTG+GGG - chr6_3:23102997-23103016 None:intergenic 40.0%
! GCATGGCTTTTCACATCATT+GGG - chr6_3:23102998-23103017 None:intergenic 40.0%
TACAGCTATGATAACTACCG+AGG + chr6_3:23103084-23103103 Msa0945030:CDS 40.0%
CGTTAACTTACTTGGATCCT+CGG - chr6_3:23103104-23103123 None:intergenic 40.0%
! AGAAGCTACTTGTTGAGTGT+AGG - chr6_3:23103231-23103250 None:intergenic 40.0%
CAACATTGACACGTTAACAC+CGG + chr6_3:23103653-23103672 Msa0945030:intron 40.0%
AATTGACACGTGTCAGACAT+TGG + chr6_3:23103743-23103762 Msa0945030:intron 40.0%
ATTGACACGTGTCAGACATT+GGG + chr6_3:23103744-23103763 Msa0945030:intron 40.0%
CATGGATCATGTGTATATGC+AGG + chr6_3:23103967-23103986 Msa0945030:CDS 40.0%
GATCATGTGTATATGCAGGA+AGG + chr6_3:23103971-23103990 Msa0945030:CDS 40.0%
! ATCAGTTCTAACTTGAGCAC+GGG + chr6_3:23104095-23104114 Msa0945030:intron 40.0%
TTTGGACCTGTAAGTCCTAT+TGG + chr6_3:23104146-23104165 Msa0945030:CDS 40.0%
AACTTCAATCCAGCACCAAT+AGG - chr6_3:23104164-23104183 None:intergenic 40.0%
CCCAAATACACCATACAAGA+TGG - chr6_3:23104378-23104397 None:intergenic 40.0%
TGATGTAGGTGCATTTGTGG+GGG + chr6_3:23101854-23101873 Msa0945030:CDS 45.0%
GCATTTGTGGGGGTAAACAT+TGG + chr6_3:23101864-23101883 Msa0945030:CDS 45.0%
CTACAAGCCCTATCAAACAC+CGG + chr6_3:23101987-23102006 Msa0945030:CDS 45.0%
TTCAACGCCGGTGTTTGATA+GGG - chr6_3:23101997-23102016 None:intergenic 45.0%
CTGTGAAGATGATTCATGGC+AGG - chr6_3:23102194-23102213 None:intergenic 45.0%
GGCACTGTGAAGATGATTCA+TGG - chr6_3:23102198-23102217 None:intergenic 45.0%
! GGGATTAAATCCATGGACTG+AGG - chr6_3:23102263-23102282 None:intergenic 45.0%
GTAGAAGGAGGAAAAGGCTT+AGG - chr6_3:23102284-23102303 None:intergenic 45.0%
CGGATCATTGTCACAGAAAC+TGG + chr6_3:23102575-23102594 Msa0945030:CDS 45.0%
! GAAACTGGTTGGCCACATTT+AGG + chr6_3:23102590-23102609 Msa0945030:CDS 45.0%
TCGTTAGGTCCACCTAAATG+TGG - chr6_3:23102605-23102624 None:intergenic 45.0%
TTTAGGTGGACCTAACGAAC+CGG + chr6_3:23102607-23102626 Msa0945030:CDS 45.0%
TTCTCCTAGTCAACCGATGA+TGG + chr6_3:23102697-23102716 Msa0945030:CDS 45.0%
! ATAGCCATCATCGGTTGACT+AGG - chr6_3:23102704-23102723 None:intergenic 45.0%
AACTGTGCAGCTATTCAAGC+TGG + chr6_3:23102956-23102975 Msa0945030:CDS 45.0%
ACTGTGCAGCTATTCAAGCT+GGG + chr6_3:23102957-23102976 Msa0945030:CDS 45.0%
! GGCATGGCTTTTCACATCAT+TGG - chr6_3:23102999-23103018 None:intergenic 45.0%
!! CACTTTTGGGTGCGAATTTC+TGG - chr6_3:23103510-23103529 None:intergenic 45.0%
CTGGAACACAACATTGACAC+CGG + chr6_3:23103579-23103598 Msa0945030:intron 45.0%
!! CTTATGTGTCGGTGTTGTGT+CGG + chr6_3:23103711-23103730 Msa0945030:intron 45.0%
! ACACCTTCGATCAGAAGTGT+CGG + chr6_3:23103768-23103787 Msa0945030:intron 45.0%
GCAGTAGAAGACAACAAACG+AGG + chr6_3:23104458-23104477 Msa0945030:three_prime_UTR 45.0%
CTTCAACGCCGGTGTTTGAT+AGG - chr6_3:23101998-23102017 None:intergenic 50.0%
ATCCATGTTGCAGCCACTGA+TGG - chr6_3:23102068-23102087 None:intergenic 50.0%
GTGGCTGTAGAAGGAGGAAA+AGG - chr6_3:23102290-23102309 None:intergenic 50.0%
! ACTGGTTGGCCACATTTAGG+TGG + chr6_3:23102593-23102612 Msa0945030:CDS 50.0%
! AAACTAGCGTCCGGTTCGTT+AGG - chr6_3:23102620-23102639 None:intergenic 50.0%
TTGTGTGGCTAAAGATGGCG+CGG + chr6_3:23102880-23102899 Msa0945030:CDS 50.0%
GACGCTGAAAAGATGGAAGC+TGG + chr6_3:23102902-23102921 Msa0945030:CDS 50.0%
!! AGATGGAAGCTGGTTTGGAC+TGG + chr6_3:23102912-23102931 Msa0945030:CDS 50.0%
!! GATGGAAGCTGGTTTGGACT+GGG + chr6_3:23102913-23102932 Msa0945030:CDS 50.0%
GAATAGCTGCACAGTTTGCC+CGG - chr6_3:23102952-23102971 None:intergenic 50.0%
!! AGCACTGACACAACACAGAC+TGG + chr6_3:23103560-23103579 Msa0945030:intron 50.0%
CGACACAACACCGACACATA+AGG - chr6_3:23103713-23103732 None:intergenic 50.0%
! AGTTCTAACTTGAGCACGGG+TGG + chr6_3:23104098-23104117 Msa0945030:intron 50.0%
CCAGCACCAATAGGACTTAC+AGG - chr6_3:23104155-23104174 None:intergenic 50.0%
CCTGTAAGTCCTATTGGTGC+TGG + chr6_3:23104152-23104171 Msa0945030:CDS 50.0%
! ACCGGCGTTGAAGTCCTTGT+TGG + chr6_3:23102005-23102024 Msa0945030:CDS 55.0%
GCCAACAAGGACTTCAACGC+CGG - chr6_3:23102009-23102028 None:intergenic 55.0%
CTCCATCAGTGGCTGCAACA+TGG + chr6_3:23102063-23102082 Msa0945030:CDS 55.0%
!! GAGGCGTCGAAACTTTGACG+CGG - chr6_3:23102244-23102263 None:intergenic 55.0%
AGTTTCGACGCCTCAGTCCA+TGG + chr6_3:23102250-23102269 Msa0945030:CDS 55.0%
! GCACCGACACTTCTGATCGA+AGG - chr6_3:23103774-23103793 None:intergenic 55.0%
AACTTGAGCACGGGTGGTGA+TGG + chr6_3:23104104-23104123 Msa0945030:CDS 55.0%
ACTTGAGCACGGGTGGTGAT+GGG + chr6_3:23104105-23104124 Msa0945030:CDS 55.0%
CTTCGTCGGTGACGCCAACA+AGG - chr6_3:23102022-23102041 None:intergenic 60.0%
TGGCGCGGACGCTGAAAAGA+TGG + chr6_3:23102895-23102914 Msa0945030:CDS 60.0%
!! GCTGGTTTGGACTGGGCTTG+CGG + chr6_3:23102920-23102939 Msa0945030:CDS 60.0%
! TTGGACTGGGCTTGCGGAGA+AGG + chr6_3:23102926-23102945 Msa0945030:CDS 60.0%
ACTGGGCTTGCGGAGAAGGC+CGG + chr6_3:23102930-23102949 Msa0945030:CDS 65.0%
CTGGGCTTGCGGAGAAGGCC+GGG + chr6_3:23102931-23102950 Msa0945030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 23101786 23104609 23101786 ID=Msa0945030;Name=Msa0945030
chr6_3 mRNA 23101786 23104609 23101786 ID=Msa0945030-mRNA-1;Parent=Msa0945030;Name=Msa0945030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|1|1|3|362|479
chr6_3 exon 23101786 23103112 23101786 ID=Msa0945030-mRNA-1:exon:6597;Parent=Msa0945030-mRNA-1
chr6_3 exon 23103965 23103992 23103965 ID=Msa0945030-mRNA-1:exon:6598;Parent=Msa0945030-mRNA-1
chr6_3 exon 23104100 23104609 23104100 ID=Msa0945030-mRNA-1:exon:6599;Parent=Msa0945030-mRNA-1
chr6_3 five_prime_UTR 23101786 23101848 23101786 ID=Msa0945030-mRNA-1:five_prime_utr;Parent=Msa0945030-mRNA-1
chr6_3 CDS 23101849 23103112 23101849 ID=Msa0945030-mRNA-1:cds;Parent=Msa0945030-mRNA-1
chr6_3 CDS 23103965 23103992 23103965 ID=Msa0945030-mRNA-1:cds;Parent=Msa0945030-mRNA-1
chr6_3 CDS 23104100 23104247 23104100 ID=Msa0945030-mRNA-1:cds;Parent=Msa0945030-mRNA-1
chr6_3 three_prime_UTR 23104248 23104609 23104248 ID=Msa0945030-mRNA-1:three_prime_utr;Parent=Msa0945030-mRNA-1
Gene Sequence

>Msa0945030

ATGTATGATGTAGGTGCATTTGTGGGGGTAAACATTGGCACTCATGTTACTGATCTACCATCAGCTTCAAATATTGTTGCTATTCTAAAATCTCATCAAATTACTCATGTGCGTCTCTATGATGCTAATGCTCACATGCTACAAGCCCTATCAAACACCGGCGTTGAAGTCCTTGTTGGCGTCACCGACGAAGAAATATTGAGAATTGGAGAATCTCCATCAGTGGCTGCAACATGGATTAGCAAAAACGTAGCTGCTTACATGCCTCACACAAATATCACAACAATAGCAGTTGGAAGTGAGGTTCTAACTTCAATCCCAAATGTTGCTCGTGTTCTTGTTCCTGCCATGAATCATCTTCACAGTGCCTTAGTTGCTTCAAACCTTCATTTCCGCGTCAAAGTTTCGACGCCTCAGTCCATGGATTTAATCCCTAAGCCTTTTCCTCCTTCTACAGCCACTTTTAACTCATCATGGAACTCAACAATTCACCAAGTCCTCCAGTTTTTGAAGAACACAAACTCTTCTTATATGTTAAATGCTCACCCTTATTATGGATATACTAAAGGAGACGGCATTTTTCCAATTGAATATGCTTTACTTCGATCCCTTCCTTCAACAAAGAAAATTGTTGATCCGAACACATTATTCCGTTATGACAGTATGTTTGATGCTATGGTGGATGCTACTTATTATTCAATACAAGCATTAAATTTCAATGATATACGGATCATTGTCACAGAAACTGGTTGGCCACATTTAGGTGGACCTAACGAACCGGACGCTAGTTTAGAAAATGCTGAGACCTACAATAATAATTTGATTAGGAGAGTACTTAATGATTCAGGTTCTCCTAGTCAACCGATGATGGCTATTAATACCTACTTATATGAATTGTTTGATGAAGATAAGAGAATAGGACCTATATCTGAAAGACATTGGGGACTTTTTTACACTACTAATGGAAGTAGTGTTTACCCTTTGAGTTTTAGTTCTTCTAACAAGATTTTCGGAAATTCTTCGAAGTCTTTTTGTGTGGCTAAAGATGGCGCGGACGCTGAAAAGATGGAAGCTGGTTTGGACTGGGCTTGCGGAGAAGGCCGGGCAAACTGTGCAGCTATTCAAGCTGGGAGACCTTGCTATTTCCCCAATGATGTGAAAAGCCATGCCTCTTATGCTTATAATGATTATTATCAAAAAATGAATAGTGTGGGAGGAACATGTGACTTTGATGATACAGCTATGATAACTACCGAGGATCCAAGTCATGGATCATGTGTATATGCAGGAAGTTCTAACTTGAGCACGGGTGGTGATGGGAGCTTTTCTTCTATTGCATTTGGACCTGTAAGTCCTATTGGTGCTGGATTGAAGTTGCAACTGTCTAGCCTTCACTATGCATTCTCTTCTACTAGTCTACTTTTGGCTCTGATGTTGTAA

Protein sequence

>Msa0945030

MYDVGAFVGVNIGTHVTDLPSASNIVAILKSHQITHVRLYDANAHMLQALSNTGVEVLVGVTDEEILRIGESPSVAATWISKNVAAYMPHTNITTIAVGSEVLTSIPNVARVLVPAMNHLHSALVASNLHFRVKVSTPQSMDLIPKPFPPSTATFNSSWNSTIHQVLQFLKNTNSSYMLNAHPYYGYTKGDGIFPIEYALLRSLPSTKKIVDPNTLFRYDSMFDAMVDATYYSIQALNFNDIRIIVTETGWPHLGGPNEPDASLENAETYNNNLIRRVLNDSGSPSQPMMAINTYLYELFDEDKRIGPISERHWGLFYTTNGSSVYPLSFSSSNKIFGNSSKSFCVAKDGADAEKMEAGLDWACGEGRANCAAIQAGRPCYFPNDVKSHASYAYNDYYQKMNSVGGTCDFDDTAMITTEDPSHGSCVYAGSSNLSTGGDGSFSSIAFGPVSPIGAGLKLQLSSLHYAFSSTSLLLALML*