AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838620 MtrunA17_Chr5g0406291 91.036 357 25 3 1 356 1 351 0.0 585
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838620 AT4G35760.1 58.735 332 112 4 41 350 37 365 2.27e-130 378
Msa0838620 AT4G35760.2 58.413 315 106 4 41 333 37 348 4.76e-121 354

Find 102 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCAGTTGAGGAGGTTTC+TGG 0.145576 5_4:+13073518 None:intergenic
TTCCCCACATGGATTATTAA+TGG 0.246472 5_4:-13070393 Msa0838620:CDS
GTGCATATGTATGTCTAAAA+AGG 0.267739 5_4:+13070121 None:intergenic
GATTCCTGAGATTAGCTTAT+AGG 0.278635 5_4:+13073493 None:intergenic
GGTGTACCTCTTCCTTTGAT+TGG 0.284171 5_4:-13072623 Msa0838620:CDS
TTGAGAATTGGAAAATTCTA+TGG 0.293650 5_4:+13073702 None:intergenic
CTAAAATGTATGGAGCTTTC+TGG 0.298863 5_4:-13071121 Msa0838620:CDS
GTAATCTCGGTTGCAAAATA+TGG 0.311759 5_4:+13071200 None:intergenic
ACAAAGAAGAATTTACCTTT+TGG 0.320249 5_4:-13072554 Msa0838620:CDS
CAATAGGAGCAAGATGATTC+AGG 0.349539 5_4:+13072434 None:intergenic
GTGTACCTCTTCCTTTGATT+GGG 0.355997 5_4:-13072622 Msa0838620:CDS
GGGTTCGGTCTGGGTTGGTT+CGG 0.374341 5_4:+13073605 None:intergenic
TTGCTCCTATTGCCTACTTT+CGG 0.377075 5_4:-13072423 Msa0838620:CDS
ATCTCAGGAATCGCCGGAAT+CGG 0.386284 5_4:-13073482 Msa0838620:CDS
GCAAGGTATTTGCATTCAAT+AGG 0.389958 5_4:-13071146 Msa0838620:CDS
GCAAGAGAAGTACAAACAAC+TGG 0.391109 5_4:-13072255 Msa0838620:CDS
GACAAAGCAAAGGGGCTTGA+TGG 0.394543 5_4:+13071173 None:intergenic
CATCGGAGCCGGTGAACTTA+AGG 0.397674 5_4:+13073432 None:intergenic
GGTTTCGATGAATCCGATTC+CGG 0.399135 5_4:+13073469 None:intergenic
TTTCTGGTGTTCACACTGTC+TGG 0.401462 5_4:-13071105 Msa0838620:CDS
TGCTTAGACGCTAAAATTGA+AGG 0.402247 5_4:-13070417 Msa0838620:CDS
AACTTCTCGATACAGATGTT+TGG 0.404936 5_4:-13070519 Msa0838620:intron
ACCTCTTCCTTTGATTGGGA+TGG 0.417711 5_4:-13072618 Msa0838620:CDS
GTAATCACTATTGAGTATAT+TGG 0.422495 5_4:+13073379 None:intergenic
TTCCTCTTGATACAGAGGTT+TGG 0.423806 5_4:-13070047 Msa0838620:three_prime_UTR
GAGAACCGAAAGTAGGCAAT+AGG 0.426376 5_4:+13072418 None:intergenic
GCAGTTGTTTATTGCTAGCT+TGG 0.427082 5_4:-13072228 Msa0838620:CDS
TGAAGGTGGCCATTGAGAAT+TGG 0.428234 5_4:+13073690 None:intergenic
AATGCTCAATTAGTATTGCT+TGG 0.431355 5_4:-13072518 Msa0838620:CDS
GAGCAAGTGCCACCGCCGAC+AGG 0.433146 5_4:+13073401 None:intergenic
GAGTGGTGAAGTGGAATTAT+CGG 0.436626 5_4:-13070267 Msa0838620:CDS
CTTGTACAAAGGGTTCGGTC+TGG 0.436938 5_4:+13073595 None:intergenic
TTGTACAAAGGGTTCGGTCT+GGG 0.437192 5_4:+13073596 None:intergenic
GTCTGGGTTGGTTCGGAGAA+CGG 0.440846 5_4:+13073612 None:intergenic
CTCTTCTCGTTTCTTCGCAC+CGG 0.443701 5_4:-13073645 Msa0838620:CDS
TCGGAGTTGGCACAAGCGTC+TGG 0.447827 5_4:-13070248 Msa0838620:CDS
TCAATAGGAGCTAAAATGTA+TGG 0.450745 5_4:-13071131 Msa0838620:CDS
GTCTTCTGCCCTGTCGGCGG+TGG 0.451403 5_4:-13073410 Msa0838620:CDS
CAGAAACCTCCTCAACTGAT+TGG 0.455868 5_4:-13073517 Msa0838620:CDS
ACGTGAGGCGGCGAAGCAAT+TGG 0.470992 5_4:-13070496 Msa0838620:CDS
GGTGACAATTCTTGTACAAA+GGG 0.475927 5_4:+13073585 None:intergenic
GAAATGCTCCTCTTCATCTT+CGG 0.480605 5_4:-13073543 Msa0838620:CDS
CAATTCTTGTACAAAGGGTT+CGG 0.481586 5_4:+13073590 None:intergenic
GTTCCTGTTCGATATCCGTC+AGG 0.487353 5_4:+13070456 None:intergenic
GGTAGAATTAGCACTGCTAT+AGG 0.491448 5_4:+13072184 None:intergenic
TTGGATCTGTTAACCCCAAA+AGG 0.493640 5_4:+13072539 None:intergenic
CTTGCTTACCTTAAGTTCAC+CGG 0.499908 5_4:-13073440 Msa0838620:CDS
AGGTGACAATTCTTGTACAA+AGG 0.500035 5_4:+13073584 None:intergenic
CACATGGATTATTAATGGCC+AGG 0.503308 5_4:-13070388 Msa0838620:intron
TTTCCTGACGGATATCGAAC+AGG 0.504131 5_4:-13070459 Msa0838620:CDS
AGCACTAGCAGTTGCCATTG+AGG 0.509543 5_4:+13072487 None:intergenic
CCTTTGCTTTGTCTCTAGCA+AGG 0.512217 5_4:-13071163 Msa0838620:CDS
AAGCAATACTAATTGAGCAT+TGG 0.514041 5_4:+13072520 None:intergenic
GGAGAACGGTTTAAACGAAC+CGG 0.514067 5_4:+13073626 None:intergenic
TGTGAGAATGAATAACGAAA+AGG 0.525624 5_4:+13072391 None:intergenic
GCTTGGAAGCACAACCTCAA+TGG 0.530217 5_4:-13072501 Msa0838620:CDS
ACAAAGGGTTCGGTCTGGGT+TGG 0.532809 5_4:+13073600 None:intergenic
ACAAGAATTGTCACCTTCAG+AGG 0.535413 5_4:-13073577 Msa0838620:CDS
CTTGCTAGAGACAAAGCAAA+GGG 0.535414 5_4:+13071164 None:intergenic
AAATTGAAGGTTTCCCCACA+TGG 0.537433 5_4:-13070404 Msa0838620:CDS
AAGCTAATCTCAGGAATCGC+CGG 0.538082 5_4:-13073488 Msa0838620:CDS
GTTATTCATTCTCACACTCA+AGG 0.544153 5_4:-13072384 Msa0838620:intron
TCCGATGTCTTCTGCCCTGT+CGG 0.546966 5_4:-13073416 Msa0838620:CDS
TGGACCTATAAGCTAATCTC+AGG 0.548745 5_4:-13073497 Msa0838620:CDS
AGCAAGTGCCACCGCCGACA+GGG 0.551052 5_4:+13073402 None:intergenic
TGATGTCTACTTTAGCAGCA+TGG 0.552378 5_4:-13071237 Msa0838620:intron
TCAGGTTCTGAGTGGTGAAG+TGG 0.555245 5_4:-13070276 Msa0838620:intron
TGAAGTGGAATTATCGGAGT+TGG 0.556007 5_4:-13070261 Msa0838620:CDS
GCCATCCCAATCAAAGGAAG+AGG 0.559625 5_4:+13072617 None:intergenic
TTCTGGTTCCGAAGATGAAG+AGG 0.564283 5_4:+13073535 None:intergenic
GAAGAGGAGCATTTCAGAGG+TGG 0.566119 5_4:+13073551 None:intergenic
CATCTCCTTCAGGTTCTGAG+TGG 0.568206 5_4:-13070284 Msa0838620:intron
AGGGCAGAAGACATCGGAGC+CGG 0.571695 5_4:+13073421 None:intergenic
GATGAAGAGGAGCATTTCAG+AGG 0.577501 5_4:+13073548 None:intergenic
CTTATAGGTCCAATCAGTTG+AGG 0.580977 5_4:+13073508 None:intergenic
CAAGAGAAGTACAAACAACT+GGG 0.583508 5_4:-13072254 Msa0838620:CDS
AGGACAAGAGAACCGAAAGT+AGG 0.584444 5_4:+13072411 None:intergenic
ATAGGTCCAATCAGTTGAGG+AGG 0.590947 5_4:+13073511 None:intergenic
TAACATTCCTCTTGATACAG+AGG 0.591280 5_4:-13070052 Msa0838620:three_prime_UTR
GCTTGATGGAGTTGTAATCT+CGG 0.593784 5_4:+13071187 None:intergenic
GTCCAAACCTCTGTATCAAG+AGG 0.593909 5_4:+13070045 None:intergenic
GCCGACAGGGCAGAAGACAT+CGG 0.598595 5_4:+13073415 None:intergenic
TACGCAGCCATCCCAATCAA+AGG 0.601856 5_4:+13072611 None:intergenic
AGAATTAGCACTGCTATAGG+AGG 0.607313 5_4:+13072187 None:intergenic
TGGCCATTAATAATCCATGT+GGG 0.611279 5_4:+13070390 None:intergenic
GATGTCTTCTGCCCTGTCGG+CGG 0.613554 5_4:-13073413 Msa0838620:CDS
CGGTGAACTTAAGGTAAGCA+AGG 0.623060 5_4:+13073441 None:intergenic
GCAGTGCTAATTCTACCTCA+AGG 0.623222 5_4:-13072178 Msa0838620:intron
GCGAAGAAACGAGAAGAGGA+AGG 0.634644 5_4:+13073650 None:intergenic
CTGGCCATTAATAATCCATG+TGG 0.635561 5_4:+13070389 None:intergenic
CGGTGCGAAGAAACGAGAAG+AGG 0.639817 5_4:+13073646 None:intergenic
TCAGAGGTGGAAACCTCTGA+AGG 0.641484 5_4:+13073564 None:intergenic
ACAGATGTTTGGACGTGAGG+CGG 0.647976 5_4:-13070508 Msa0838620:intron
GATACAGATGTTTGGACGTG+AGG 0.652504 5_4:-13070511 Msa0838620:intron
CCTTGCTAGAGACAAAGCAA+AGG 0.653967 5_4:+13071163 None:intergenic
GGCGAAGCAATTGGATTACG+TGG 0.657076 5_4:-13070487 Msa0838620:CDS
GGCCATTAATAATCCATGTG+GGG 0.662317 5_4:+13070391 None:intergenic
CTTAAGGTAAGCAAGGTACG+AGG 0.662511 5_4:+13073448 None:intergenic
TGATAGTGTTGTAACAGTGA+AGG 0.677955 5_4:+13073673 None:intergenic
TAGTGTTGTAACAGTGAAGG+TGG 0.684390 5_4:+13073676 None:intergenic
AGATGATTCAGGAAACGCTG+TGG 0.726566 5_4:+13072445 None:intergenic
TTGCTAGAGACAAAGCAAAG+GGG 0.737943 5_4:+13071165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATATTATCTACTTATAT+AGG + chr5_4:13070679-13070698 None:intergenic 15.0%
!!! CATAGTTATTTAAAACTTAA+AGG + chr5_4:13070916-13070935 None:intergenic 15.0%
!! TAAAATGGAAATTTCAAAAA+GGG + chr5_4:13071437-13071456 None:intergenic 15.0%
!! ACAAATTAGTTAGTTAGTTA+AGG + chr5_4:13070397-13070416 None:intergenic 20.0%
!!! CTATTTTCACAAATTATTAC+CGG + chr5_4:13070748-13070767 None:intergenic 20.0%
!!! AAAAGCATCAAATAAAACAT+AGG + chr5_4:13071009-13071028 None:intergenic 20.0%
!! AAAAAGGAAATAGAAAAAGT+TGG + chr5_4:13071394-13071413 None:intergenic 20.0%
!! CTAAAATGGAAATTTCAAAA+AGG + chr5_4:13071438-13071457 None:intergenic 20.0%
!!! CTTTTTGAAATTTCCATTTT+AGG - chr5_4:13071436-13071455 Msa0838620:intron 20.0%
!! TATAACACAAACTAAAGTTA+TGG + chr5_4:13072902-13072921 None:intergenic 20.0%
!! ATTACCAAGAATAGAAAAAT+AGG + chr5_4:13073148-13073167 None:intergenic 20.0%
!! TTCTATCAAAAACATTAACT+AGG + chr5_4:13073521-13073540 None:intergenic 20.0%
! TTGAGAATTGGAAAATTCTA+TGG + chr5_4:13070025-13070044 None:intergenic 25.0%
!! TAGAATTTTCCAATTCTCAA+TGG - chr5_4:13070025-13070044 Msa0838620:three_prime_UTR 25.0%
! GTAATCACTATTGAGTATAT+TGG + chr5_4:13070348-13070367 None:intergenic 25.0%
! ATAACCATTTATCATAGAAC+TGG - chr5_4:13070485-13070504 Msa0838620:CDS 25.0%
! AAATATTGTGTGAATCAAAG+TGG - chr5_4:13071064-13071083 Msa0838620:intron 25.0%
!! ACAAAGAAGAATTTACCTTT+TGG - chr5_4:13071170-13071189 Msa0838620:CDS 25.0%
!! CAAAGAAGAATTTACCTTTT+GGG - chr5_4:13071171-13071190 Msa0838620:CDS 25.0%
!! AAAGAAGAATTTACCTTTTG+GGG - chr5_4:13071172-13071191 Msa0838620:CDS 25.0%
!!! AAATTTCCATTTTAGGACAT+TGG - chr5_4:13071443-13071462 Msa0838620:intron 25.0%
!! TTTCATGAGATTTTACATTC+AGG - chr5_4:13071702-13071721 Msa0838620:intron 25.0%
! AGCTTAGAAAAAAGGAATAT+TGG + chr5_4:13071757-13071776 None:intergenic 25.0%
! AAGCACAAAAAATACATGAA+GGG + chr5_4:13071857-13071876 None:intergenic 25.0%
! AAAGCACAAAAAATACATGA+AGG + chr5_4:13071858-13071877 None:intergenic 25.0%
!!! TTTTTCTTTAAGGCTTTTAC+AGG + chr5_4:13072045-13072064 None:intergenic 25.0%
! CAAATAATAGCAAATGGAAA+TGG - chr5_4:13072083-13072102 Msa0838620:intron 25.0%
! ACATTATCAAAACTACTTGA+GGG + chr5_4:13072112-13072131 None:intergenic 25.0%
! TACATTATCAAAACTACTTG+AGG + chr5_4:13072113-13072132 None:intergenic 25.0%
! TTTCAAGCTTCTTAAAATCA+CGG - chr5_4:13072758-13072777 Msa0838620:intron 25.0%
! TAGTTATCAAATCAAACTTC+AGG - chr5_4:13072928-13072947 Msa0838620:intron 25.0%
! AGGAATGTATCTTTCAAAAA+AGG - chr5_4:13072948-13072967 Msa0838620:intron 25.0%
! TTCAATTGGATTCGTATATT+TGG - chr5_4:13073015-13073034 Msa0838620:intron 25.0%
!!! TCAACCTATTTTTCTATTCT+TGG - chr5_4:13073141-13073160 Msa0838620:intron 25.0%
!! ATAAATGGCCATAATTTGCT+GGG + chr5_4:13070641-13070660 None:intergenic 30.0%
CAATTGTGATAGCTCATAAA+TGG + chr5_4:13070656-13070675 None:intergenic 30.0%
AAGCAATACTAATTGAGCAT+TGG + chr5_4:13071207-13071226 None:intergenic 30.0%
AATGCTCAATTAGTATTGCT+TGG - chr5_4:13071206-13071225 Msa0838620:CDS 30.0%
TGTGAGAATGAATAACGAAA+AGG + chr5_4:13071336-13071355 None:intergenic 30.0%
ATACAGTAATATTCACCTTG+AGG + chr5_4:13071564-13071583 None:intergenic 30.0%
ATTGATGCTAGTATTTCACT+AGG - chr5_4:13071652-13071671 Msa0838620:intron 30.0%
! CACTAGGTTGAACAAATTTA+AGG - chr5_4:13071668-13071687 Msa0838620:intron 30.0%
TCGGTAGAATGTATTTAATC+TGG - chr5_4:13071813-13071832 Msa0838620:intron 30.0%
CAAACATTCAACTGAAAGAA+GGG + chr5_4:13071936-13071955 None:intergenic 30.0%
GGAGTTAATTATGCTTAACA+CGG + chr5_4:13071974-13071993 None:intergenic 30.0%
!!! CCACTACACTTTTTTCTTTA+AGG + chr5_4:13072055-13072074 None:intergenic 30.0%
! CCTTAAAGAAAAAAGTGTAG+TGG - chr5_4:13072052-13072071 Msa0838620:intron 30.0%
!! AGAAAAAAGTGTAGTGGATT+TGG - chr5_4:13072058-13072077 Msa0838620:intron 30.0%
TTGGCACAAATAATAGCAAA+TGG - chr5_4:13072077-13072096 Msa0838620:intron 30.0%
GTACAAATGTTGTCAAATAG+TGG - chr5_4:13072141-13072160 Msa0838620:intron 30.0%
ATCCTTCAAAATTTGGTCAT+AGG + chr5_4:13072213-13072232 None:intergenic 30.0%
!! TATGACCAAATTTTGAAGGA+TGG - chr5_4:13072212-13072231 Msa0838620:CDS 30.0%
AAAATCCTCAATAAAATGCC+GGG + chr5_4:13072244-13072263 None:intergenic 30.0%
CAAAATCCTCAATAAAATGC+CGG + chr5_4:13072245-13072264 None:intergenic 30.0%
TGATGACATTATACAAGTCA+GGG + chr5_4:13072296-13072315 None:intergenic 30.0%
ACTTGTATAATGTCATCACA+TGG - chr5_4:13072298-13072317 Msa0838620:intron 30.0%
! TTTTATTCATCGCCATTATG+TGG - chr5_4:13072369-13072388 Msa0838620:intron 30.0%
TCAATAGGAGCTAAAATGTA+TGG - chr5_4:13072593-13072612 Msa0838620:CDS 30.0%
AACATAAGACATTCTTTACC+TGG + chr5_4:13073357-13073376 None:intergenic 30.0%
GTGCATATGTATGTCTAAAA+AGG + chr5_4:13073606-13073625 None:intergenic 30.0%
! TGATAGTGTTGTAACAGTGA+AGG + chr5_4:13070054-13070073 None:intergenic 35.0%
CAATTCTTGTACAAAGGGTT+CGG + chr5_4:13070137-13070156 None:intergenic 35.0%
GGTGACAATTCTTGTACAAA+GGG + chr5_4:13070142-13070161 None:intergenic 35.0%
AGGTGACAATTCTTGTACAA+AGG + chr5_4:13070143-13070162 None:intergenic 35.0%
!! GATTCCTGAGATTAGCTTAT+AGG + chr5_4:13070234-13070253 None:intergenic 35.0%
ATAGACGATACCAAAAACGA+CGG + chr5_4:13070372-13070391 None:intergenic 35.0%
GCAACCAGTTCTATGATAAA+TGG + chr5_4:13070492-13070511 None:intergenic 35.0%
!! AGCTTATTTCTAAGCTCTCT+AGG + chr5_4:13070585-13070604 None:intergenic 35.0%
TAGAAATAAGCTGCAACGTA+TGG - chr5_4:13070593-13070612 Msa0838620:intron 35.0%
! CATAAATGGCCATAATTTGC+TGG + chr5_4:13070642-13070661 None:intergenic 35.0%
ACAAATTATTACCGGTGCAT+AGG + chr5_4:13070740-13070759 None:intergenic 35.0%
GACACCAACACAATACATAT+CGG + chr5_4:13070820-13070839 None:intergenic 35.0%
TGTCAAACACTAATGCATGT+TGG - chr5_4:13070836-13070855 Msa0838620:intron 35.0%
AGCACTAAACTTGCAATTGA+AGG + chr5_4:13070873-13070892 None:intergenic 35.0%
!! AATCAAAGTGGTTTTGCATC+TGG - chr5_4:13071076-13071095 Msa0838620:intron 35.0%
GTTATTCATTCTCACACTCA+AGG - chr5_4:13071340-13071359 Msa0838620:intron 35.0%
TGCAATCCAATGTCCTAAAA+TGG + chr5_4:13071452-13071471 None:intergenic 35.0%
! CAAGAGAAGTACAAACAACT+GGG - chr5_4:13071470-13071489 Msa0838620:intron 35.0%
CTGAAAGCAGCTTAGAAAAA+AGG + chr5_4:13071765-13071784 None:intergenic 35.0%
!! TGTTGACTTCGATATGACAT+CGG - chr5_4:13071794-13071813 Msa0838620:intron 35.0%
GGGGAAGTTATTACTAACAA+AGG + chr5_4:13071891-13071910 None:intergenic 35.0%
ATTCAACTGAAAGAAGGGAT+GGG + chr5_4:13071931-13071950 None:intergenic 35.0%
GCAAACATTCAACTGAAAGA+AGG + chr5_4:13071937-13071956 None:intergenic 35.0%
AATTGTAAGATCAGTCAAGC+AGG - chr5_4:13072006-13072025 Msa0838620:intron 35.0%
AAATCCTCAATAAAATGCCG+GGG + chr5_4:13072243-13072262 None:intergenic 35.0%
! CGGCATTTTATTGAGGATTT+TGG - chr5_4:13072243-13072262 Msa0838620:CDS 35.0%
GTGATGACATTATACAAGTC+AGG + chr5_4:13072297-13072316 None:intergenic 35.0%
GGCGATGAATAAAATTCTGT+AGG + chr5_4:13072363-13072382 None:intergenic 35.0%
TCCTATCAGAGATTGAAGTT+AGG - chr5_4:13072418-13072437 Msa0838620:CDS 35.0%
ACCTAACTTCAATCTCTGAT+AGG + chr5_4:13072422-13072441 None:intergenic 35.0%
GTAATCTCGGTTGCAAAATA+TGG + chr5_4:13072527-13072546 None:intergenic 35.0%
! GCAAGGTATTTGCATTCAAT+AGG - chr5_4:13072578-13072597 Msa0838620:CDS 35.0%
CTAAAATGTATGGAGCTTTC+TGG - chr5_4:13072603-13072622 Msa0838620:CDS 35.0%
TAACAAACAGGCACTTAGTA+AGG + chr5_4:13072693-13072712 None:intergenic 35.0%
! TAAGTGCCTGTTTGTTAACA+CGG - chr5_4:13072696-13072715 Msa0838620:intron 35.0%
! TTGTAGAGTTGGTCAAAACT+CGG + chr5_4:13072738-13072757 None:intergenic 35.0%
GAAGCTTGAAATTGTAGAGT+TGG + chr5_4:13072749-13072768 None:intergenic 35.0%
AAGCTTCTTAAAATCACGGT+GGG - chr5_4:13072762-13072781 Msa0838620:intron 35.0%
TAAACCAAACACATGCTAAG+TGG - chr5_4:13072821-13072840 Msa0838620:intron 35.0%
GATATTGCCTTGGTTTCAAT+TGG - chr5_4:13073001-13073020 Msa0838620:intron 35.0%
TACGAATCCAATTGAAACCA+AGG + chr5_4:13073011-13073030 None:intergenic 35.0%
AACTTCTCGATACAGATGTT+TGG - chr5_4:13073205-13073224 Msa0838620:intron 35.0%
TGCTTAGACGCTAAAATTGA+AGG - chr5_4:13073307-13073326 Msa0838620:intron 35.0%
! TTCCCCACATGGATTATTAA+TGG - chr5_4:13073331-13073350 Msa0838620:intron 35.0%
TGGCCATTAATAATCCATGT+GGG + chr5_4:13073337-13073356 None:intergenic 35.0%
AATTTGTGAGAAGAGAAGAG+AGG + chr5_4:13073398-13073417 None:intergenic 35.0%
ATTACATTTGCATCTCCTTC+AGG - chr5_4:13073430-13073449 Msa0838620:CDS 35.0%
TAACATTCCTCTTGATACAG+AGG - chr5_4:13073672-13073691 Msa0838620:CDS 35.0%
TAGTGTTGTAACAGTGAAGG+TGG + chr5_4:13070051-13070070 None:intergenic 40.0%
ACAAGAATTGTCACCTTCAG+AGG - chr5_4:13070147-13070166 Msa0838620:three_prime_UTR 40.0%
GAAATGCTCCTCTTCATCTT+CGG - chr5_4:13070181-13070200 Msa0838620:three_prime_UTR 40.0%
CTTATAGGTCCAATCAGTTG+AGG + chr5_4:13070219-13070238 None:intergenic 40.0%
TGGACCTATAAGCTAATCTC+AGG - chr5_4:13070227-13070246 Msa0838620:CDS 40.0%
CTTGCTTACCTTAAGTTCAC+CGG - chr5_4:13070284-13070303 Msa0838620:intron 40.0%
! ATACATATCGGTGTCTGACA+CGG + chr5_4:13070808-13070827 None:intergenic 40.0%
GACACCGATATGTATTGTGT+TGG - chr5_4:13070813-13070832 Msa0838620:intron 40.0%
ATTGCAAGTTTAGTGCTACG+TGG - chr5_4:13070876-13070895 Msa0838620:intron 40.0%
! ACACAGTGTTGAGTTGTGAT+TGG - chr5_4:13070951-13070970 Msa0838620:intron 40.0%
GTGTACCTCTTCCTTTGATT+GGG - chr5_4:13071102-13071121 Msa0838620:CDS 40.0%
TTGGATCTGTTAACCCCAAA+AGG + chr5_4:13071188-13071207 None:intergenic 40.0%
CAATAGGAGCAAGATGATTC+AGG + chr5_4:13071293-13071312 None:intergenic 40.0%
TTGCTCCTATTGCCTACTTT+CGG - chr5_4:13071301-13071320 Msa0838620:intron 40.0%
AATTACGCAGCGACACAAAA+AGG + chr5_4:13071410-13071429 None:intergenic 40.0%
! GCAAGAGAAGTACAAACAAC+TGG - chr5_4:13071469-13071488 Msa0838620:intron 40.0%
GCAGTTGTTTATTGCTAGCT+TGG - chr5_4:13071496-13071515 Msa0838620:intron 40.0%
AGAATTAGCACTGCTATAGG+AGG + chr5_4:13071540-13071559 None:intergenic 40.0%
GGTAGAATTAGCACTGCTAT+AGG + chr5_4:13071543-13071562 None:intergenic 40.0%
ACATTCAGGCTTATAGCTCA+TGG - chr5_4:13071716-13071735 Msa0838620:intron 40.0%
TGAAAGAAGGGATGGGATAA+GGG + chr5_4:13071924-13071943 None:intergenic 40.0%
CATTCAACTGAAAGAAGGGA+TGG + chr5_4:13071932-13071951 None:intergenic 40.0%
TATGCTTAACACGGTGAGTT+CGG + chr5_4:13071965-13071984 None:intergenic 40.0%
ATGTTGTCAAATAGTGGCGA+TGG - chr5_4:13072147-13072166 Msa0838620:intron 40.0%
CAAAATTTGGTCATAGGCGT+TGG + chr5_4:13072207-13072226 None:intergenic 40.0%
! CGCCTATGACCAAATTTTGA+AGG - chr5_4:13072208-13072227 Msa0838620:CDS 40.0%
TGCTGCCATCCTTCAAAATT+TGG + chr5_4:13072220-13072239 None:intergenic 40.0%
CAAGTCAGGGTTATTGATAG+AGG + chr5_4:13072283-13072302 None:intergenic 40.0%
GCTAACTAACTGCCACATAA+TGG + chr5_4:13072384-13072403 None:intergenic 40.0%
! ATGTGGCAGTTAGTTAGCTT+TGG - chr5_4:13072386-13072405 Msa0838620:CDS 40.0%
TGATGTCTACTTTAGCAGCA+TGG - chr5_4:13072487-13072506 Msa0838620:CDS 40.0%
GCTTGATGGAGTTGTAATCT+CGG + chr5_4:13072540-13072559 None:intergenic 40.0%
TTGCTAGAGACAAAGCAAAG+GGG + chr5_4:13072562-13072581 None:intergenic 40.0%
CTTGCTAGAGACAAAGCAAA+GGG + chr5_4:13072563-13072582 None:intergenic 40.0%
! ACACTGTCTGGAACAAAAAG+AGG - chr5_4:13072631-13072650 Msa0838620:intron 40.0%
CAAGCTTCTTAAAATCACGG+TGG - chr5_4:13072761-13072780 Msa0838620:intron 40.0%
TGTTCCACTTAGCATGTGTT+TGG + chr5_4:13072828-13072847 None:intergenic 40.0%
AAAAAGGACTCACTCTCTCA+TGG - chr5_4:13072964-13072983 Msa0838620:intron 40.0%
ATTCCTCTGCTATAGCCTAT+AGG - chr5_4:13073085-13073104 Msa0838620:intron 40.0%
CTCTACTGTGATATGCCTAT+AGG + chr5_4:13073103-13073122 None:intergenic 40.0%
! TACGTGGAATGTTTTCCTGA+CGG - chr5_4:13073253-13073272 Msa0838620:intron 40.0%
AAATTGAAGGTTTCCCCACA+TGG - chr5_4:13073320-13073339 Msa0838620:intron 40.0%
GGCCATTAATAATCCATGTG+GGG + chr5_4:13073336-13073355 None:intergenic 40.0%
CTGGCCATTAATAATCCATG+TGG + chr5_4:13073338-13073357 None:intergenic 40.0%
! CACATGGATTATTAATGGCC+AGG - chr5_4:13073336-13073355 Msa0838620:intron 40.0%
GAGTGGTGAAGTGGAATTAT+CGG - chr5_4:13073457-13073476 Msa0838620:CDS 40.0%
TGAAGTGGAATTATCGGAGT+TGG - chr5_4:13073463-13073482 Msa0838620:CDS 40.0%
TTCCTCTTGATACAGAGGTT+TGG - chr5_4:13073677-13073696 Msa0838620:CDS 40.0%
TGAAGGTGGCCATTGAGAAT+TGG + chr5_4:13070037-13070056 None:intergenic 45.0%
GGAGAACGGTTTAAACGAAC+CGG + chr5_4:13070101-13070120 None:intergenic 45.0%
! TTGTACAAAGGGTTCGGTCT+GGG + chr5_4:13070131-13070150 None:intergenic 45.0%
!! GATGAAGAGGAGCATTTCAG+AGG + chr5_4:13070179-13070198 None:intergenic 45.0%
!! TTCTGGTTCCGAAGATGAAG+AGG + chr5_4:13070192-13070211 None:intergenic 45.0%
CAATCAGTTGAGGAGGTTTC+TGG + chr5_4:13070209-13070228 None:intergenic 45.0%
CAGAAACCTCCTCAACTGAT+TGG - chr5_4:13070207-13070226 Msa0838620:exon 45.0%
ATAGGTCCAATCAGTTGAGG+AGG + chr5_4:13070216-13070235 None:intergenic 45.0%
AAGCTAATCTCAGGAATCGC+CGG - chr5_4:13070236-13070255 Msa0838620:CDS 45.0%
GGTTTCGATGAATCCGATTC+CGG + chr5_4:13070258-13070277 None:intergenic 45.0%
CTTAAGGTAAGCAAGGTACG+AGG + chr5_4:13070279-13070298 None:intergenic 45.0%
CGGTGAACTTAAGGTAAGCA+AGG + chr5_4:13070286-13070305 None:intergenic 45.0%
!! AGTGATTACGCCGTCGTTTT+TGG - chr5_4:13070359-13070378 Msa0838620:intron 45.0%
TAAGCTGCAACGTATGGACT+CGG - chr5_4:13070599-13070618 Msa0838620:intron 45.0%
! CAACGTATGGACTCGGTATT+TGG - chr5_4:13070606-13070625 Msa0838620:intron 45.0%
TAGCCACTCCCAGCAAATTA+TGG - chr5_4:13070630-13070649 Msa0838620:intron 45.0%
! TACATATCGGTGTCTGACAC+GGG + chr5_4:13070807-13070826 None:intergenic 45.0%
!! AAAGTGGTTTTGCATCTGGC+AGG - chr5_4:13071080-13071099 Msa0838620:intron 45.0%
GGTGTACCTCTTCCTTTGAT+TGG - chr5_4:13071101-13071120 Msa0838620:CDS 45.0%
ACCTCTTCCTTTGATTGGGA+TGG - chr5_4:13071106-13071125 Msa0838620:CDS 45.0%
AGATGATTCAGGAAACGCTG+TGG + chr5_4:13071282-13071301 None:intergenic 45.0%
GAGAACCGAAAGTAGGCAAT+AGG + chr5_4:13071309-13071328 None:intergenic 45.0%
AGGACAAGAGAACCGAAAGT+AGG + chr5_4:13071316-13071335 None:intergenic 45.0%
GCAGTGCTAATTCTACCTCA+AGG - chr5_4:13071546-13071565 Msa0838620:intron 45.0%
GGATAAGGGAGTAAGCAAAG+GGG + chr5_4:13071910-13071929 None:intergenic 45.0%
GGGATAAGGGAGTAAGCAAA+GGG + chr5_4:13071911-13071930 None:intergenic 45.0%
TGGGATAAGGGAGTAAGCAA+AGG + chr5_4:13071912-13071931 None:intergenic 45.0%
CTGAAAGAAGGGATGGGATA+AGG + chr5_4:13071925-13071944 None:intergenic 45.0%
CTTACAATTCTCGACTCAGC+AGG + chr5_4:13071995-13072014 None:intergenic 45.0%
!!! AGGATTTTGGCTTTCTGCCA+CGG - chr5_4:13072256-13072275 Msa0838620:CDS 45.0%
CCTTGCTAGAGACAAAGCAA+AGG + chr5_4:13072564-13072583 None:intergenic 45.0%
CCTTTGCTTTGTCTCTAGCA+AGG - chr5_4:13072561-13072580 Msa0838620:CDS 45.0%
! TTTCTGGTGTTCACACTGTC+TGG - chr5_4:13072619-13072638 Msa0838620:CDS 45.0%
! TGCCTGTTTGTTAACACGGT+GGG - chr5_4:13072700-13072719 Msa0838620:intron 45.0%
ATCCCACCGTGTTAACAAAC+AGG + chr5_4:13072705-13072724 None:intergenic 45.0%
!! TGGTCAAAACTCGGTTTGGT+GGG + chr5_4:13072729-13072748 None:intergenic 45.0%
!! TTGGTCAAAACTCGGTTTGG+TGG + chr5_4:13072730-13072749 None:intergenic 45.0%
! GAGTTGGTCAAAACTCGGTT+TGG + chr5_4:13072733-13072752 None:intergenic 45.0%
TCCTTGTGAGGATATTGCCT+TGG - chr5_4:13072991-13073010 Msa0838620:intron 45.0%
ACCAAGGCAATATCCTCACA+AGG + chr5_4:13072995-13073014 None:intergenic 45.0%
ATGCCTATAGGCTATAGCAG+AGG + chr5_4:13073091-13073110 None:intergenic 45.0%
GATACAGATGTTTGGACGTG+AGG - chr5_4:13073213-13073232 Msa0838620:intron 45.0%
! TTTCCTGACGGATATCGAAC+AGG - chr5_4:13073265-13073284 Msa0838620:intron 45.0%
GTCCAAACCTCTGTATCAAG+AGG + chr5_4:13073682-13073701 None:intergenic 45.0%
GCGAAGAAACGAGAAGAGGA+AGG + chr5_4:13070077-13070096 None:intergenic 50.0%
CTCTTCTCGTTTCTTCGCAC+CGG - chr5_4:13070079-13070098 Msa0838620:three_prime_UTR 50.0%
! CTTGTACAAAGGGTTCGGTC+TGG + chr5_4:13070132-13070151 None:intergenic 50.0%
TCAGAGGTGGAAACCTCTGA+AGG + chr5_4:13070163-13070182 None:intergenic 50.0%
!! GAAGAGGAGCATTTCAGAGG+TGG + chr5_4:13070176-13070195 None:intergenic 50.0%
ATCTCAGGAATCGCCGGAAT+CGG - chr5_4:13070242-13070261 Msa0838620:CDS 50.0%
!! TGGCCATAATTTGCTGGGAG+TGG + chr5_4:13070636-13070655 None:intergenic 50.0%
GCCATCCCAATCAAAGGAAG+AGG + chr5_4:13071110-13071129 None:intergenic 50.0%
TACGCAGCCATCCCAATCAA+AGG + chr5_4:13071116-13071135 None:intergenic 50.0%
! GCTTGGAAGCACAACCTCAA+TGG - chr5_4:13071223-13071242 Msa0838620:CDS 50.0%
AGCACTAGCAGTTGCCATTG+AGG + chr5_4:13071240-13071259 None:intergenic 50.0%
TCTGTCACCACAATCAGCCA+TGG + chr5_4:13072177-13072196 None:intergenic 50.0%
! AGCACCCCGGCATTTTATTG+AGG - chr5_4:13072236-13072255 Msa0838620:CDS 50.0%
GGGTTATTGATAGAGGACCG+TGG + chr5_4:13072276-13072295 None:intergenic 50.0%
GACAAAGCAAAGGGGCTTGA+TGG + chr5_4:13072554-13072573 None:intergenic 50.0%
! GTGCCTGTTTGTTAACACGG+TGG - chr5_4:13072699-13072718 Msa0838620:intron 50.0%
AATCACGGTGGGATGTGCAT+TGG - chr5_4:13072773-13072792 Msa0838620:intron 50.0%
ATCACGGTGGGATGTGCATT+GGG - chr5_4:13072774-13072793 Msa0838620:intron 50.0%
TCTCATGGCTACTCCTTGTG+AGG - chr5_4:13072979-13072998 Msa0838620:intron 50.0%
ACAGATGTTTGGACGTGAGG+CGG - chr5_4:13073216-13073235 Msa0838620:intron 50.0%
GGCGAAGCAATTGGATTACG+TGG - chr5_4:13073237-13073256 Msa0838620:intron 50.0%
GTTCCTGTTCGATATCCGTC+AGG + chr5_4:13073271-13073290 None:intergenic 50.0%
!! CATCTCCTTCAGGTTCTGAG+TGG - chr5_4:13073440-13073459 Msa0838620:CDS 50.0%
CTTCACCACTCAGAACCTGA+AGG + chr5_4:13073448-13073467 None:intergenic 50.0%
!! TCAGGTTCTGAGTGGTGAAG+TGG - chr5_4:13073448-13073467 Msa0838620:CDS 50.0%
CGGTGCGAAGAAACGAGAAG+AGG + chr5_4:13070081-13070100 None:intergenic 55.0%
!! GTCTGGGTTGGTTCGGAGAA+CGG + chr5_4:13070115-13070134 None:intergenic 55.0%
! ACAAAGGGTTCGGTCTGGGT+TGG + chr5_4:13070127-13070146 None:intergenic 55.0%
CATCGGAGCCGGTGAACTTA+AGG + chr5_4:13070295-13070314 None:intergenic 55.0%
TCCGATGTCTTCTGCCCTGT+CGG - chr5_4:13070308-13070327 Msa0838620:intron 55.0%
ATGACGCAACGCCTATGCAC+CGG - chr5_4:13070726-13070745 Msa0838620:intron 55.0%
TTTGAAGGATGGCAGCACCC+CGG - chr5_4:13072223-13072242 Msa0838620:CDS 55.0%
!! GGGTTCGGTCTGGGTTGGTT+CGG + chr5_4:13070122-13070141 None:intergenic 60.0%
AGGGCAGAAGACATCGGAGC+CGG + chr5_4:13070306-13070325 None:intergenic 60.0%
GCCGACAGGGCAGAAGACAT+CGG + chr5_4:13070312-13070331 None:intergenic 60.0%
GATGTCTTCTGCCCTGTCGG+CGG - chr5_4:13070311-13070330 Msa0838620:intron 60.0%
ACGTGAGGCGGCGAAGCAAT+TGG - chr5_4:13073228-13073247 Msa0838620:intron 60.0%
TCGGAGTTGGCACAAGCGTC+TGG - chr5_4:13073476-13073495 Msa0838620:CDS 60.0%
AGCAAGTGCCACCGCCGACA+GGG + chr5_4:13070325-13070344 None:intergenic 65.0%
ATAGTGGCGATGGCGCGCCA+TGG - chr5_4:13072157-13072176 Msa0838620:intron 65.0%
TGGCGCGCCATGGCTGATTG+TGG - chr5_4:13072167-13072186 Msa0838620:intron 65.0%
GTCTTCTGCCCTGTCGGCGG+TGG - chr5_4:13070314-13070333 Msa0838620:intron 70.0%
GAGCAAGTGCCACCGCCGAC+AGG + chr5_4:13070326-13070345 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 13070004 13073742 13070004 ID=Msa0838620;Name=Msa0838620
chr5_4 mRNA 13070004 13073742 13070004 ID=Msa0838620-mRNA-1;Parent=Msa0838620;Name=Msa0838620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=40|0.8|0.83|1|1|1|6|216|356
chr5_4 exon 13070004 13070294 13070004 ID=Msa0838620-mRNA-1:exon:5832;Parent=Msa0838620-mRNA-1
chr5_4 exon 13070389 13070526 13070389 ID=Msa0838620-mRNA-1:exon:5831;Parent=Msa0838620-mRNA-1
chr5_4 exon 13071094 13071244 13071094 ID=Msa0838620-mRNA-1:exon:5830;Parent=Msa0838620-mRNA-1
chr5_4 exon 13072179 13072288 13072179 ID=Msa0838620-mRNA-1:exon:5829;Parent=Msa0838620-mRNA-1
chr5_4 exon 13072385 13072644 13072385 ID=Msa0838620-mRNA-1:exon:5828;Parent=Msa0838620-mRNA-1
chr5_4 exon 13073366 13073742 13073366 ID=Msa0838620-mRNA-1:exon:5827;Parent=Msa0838620-mRNA-1
chr5_4 five_prime_UTR 13073703 13073742 13073703 ID=Msa0838620-mRNA-1:five_prime_utr;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13073366 13073702 13073366 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13072385 13072644 13072385 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13072179 13072288 13072179 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13071094 13071244 13071094 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13070389 13070526 13070389 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 CDS 13070220 13070294 13070220 ID=Msa0838620-mRNA-1:cds;Parent=Msa0838620-mRNA-1
chr5_4 three_prime_UTR 13070004 13070219 13070004 ID=Msa0838620-mRNA-1:three_prime_utr;Parent=Msa0838620-mRNA-1
Gene Sequence

>Msa0838620

ATGGCCACCTTCACTGTTACAACACTATCACCTTCCTCTTCTCGTTTCTTCGCACCGGTTCGTTTAAACCGTTCTCCGAACCAACCCAGACCGAACCCTTTGTACAAGAATTGTCACCTTCAGAGGTTTCCACCTCTGAAATGCTCCTCTTCATCTTCGGAACCAGAAACCTCCTCAACTGATTGGACCTATAAGCTAATCTCAGGAATCGCCGGAATCGGATTCATCGAAACCTCGTACCTTGCTTACCTTAAGTTCACCGGCTCCGATGTCTTCTGCCCTGTCGGCGGTGGCACTTGCTCCAATATACTCAATAGTGATTACGCCGTCGTTTTTGGTGTACCTCTTCCTTTGATTGGGATGGCTGCGTATAGTTTTGTAGCTGCTCTTAGTCTTCAGTTAGCTACAAAGAAGAATTTACCTTTTGGGGTTAACAGATCCAATGCTCAATTAGTATTGCTTGGAAGCACAACCTCAATGGCAACTGCTAGTGCTTATTTTTTGTACATTCTAACCACAGCGTTTCCTGAATCATCTTGCTCCTATTGCCTACTTTCGGTTCTCTTGTCCTTTTCGTTATTCATTCTCACACTCAAGGACATTGGATTGCAAGAGAAGTACAAACAACTGGGTTTGCAGTTGTTTATTGCTAGCTTGGTGATTCTTACATTGAACACCTCCTATAGCAGTGCTAATTCTACCTCAAGCAGCATGGCTAAAATTGAGCTGCCATATTTTGCAACCGAGATTACAACTCCATCAAGCCCCTTTGCTTTGTCTCTAGCAAGGTATTTGCATTCAATAGGAGCTAAAATGTATGGAGCTTTCTGGTGTTCACACTGTCTGGAACAAAAAGAGATGTTTGGACGTGAGGCGGCGAAGCAATTGGATTACGTGGAATGTTTTCCTGACGGATATCGAACAGGAACTAAAATGATCGATGCATGCTTAGACGCTAAAATTGAAGGTTTCCCCACATGGATTATTAATGGCCAGGTTCTGAGTGGTGAAGTGGAATTATCGGAGTTGGCACAAGCGTCTGGTTATAGTGAATCTGATCAACCTAGTTAA

Protein sequence

>Msa0838620

MATFTVTTLSPSSSRFFAPVRLNRSPNQPRPNPLYKNCHLQRFPPLKCSSSSSEPETSSTDWTYKLISGIAGIGFIETSYLAYLKFTGSDVFCPVGGGTCSNILNSDYAVVFGVPLPLIGMAAYSFVAALSLQLATKKNLPFGVNRSNAQLVLLGSTTSMATASAYFLYILTTAFPESSCSYCLLSVLLSFSLFILTLKDIGLQEKYKQLGLQLFIASLVILTLNTSYSSANSTSSSMAKIELPYFATEITTPSSPFALSLARYLHSIGAKMYGAFWCSHCLEQKEMFGREAAKQLDYVECFPDGYRTGTKMIDACLDAKIEGFPTWIINGQVLSGEVELSELAQASGYSESDQPS*