AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0451120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451120 MtrunA17_Chr3g0095781 99.535 215 1 0 1 215 1 215 7.54e-159 437
Msa0451120 MtrunA17_Chr5g0442751 71.429 217 59 2 1 215 1 216 3.13e-111 317
Msa0451120 MtrunA17_Chr5g0442741 68.519 216 67 1 1 215 1 216 1.94e-108 310
Msa0451120 MtrunA17_Chr3g0095821 79.882 169 34 0 47 215 1 169 1.91e-102 293
Msa0451120 MtrunA17_Chr3g0109891 58.216 213 88 1 1 212 1 213 1.54e-87 257
Msa0451120 MtrunA17_Chr1g0195831 49.048 210 104 3 1 208 1 209 7.97e-70 212
Msa0451120 MtrunA17_Chr1g0157211 48.624 218 106 3 3 214 5 222 1.70e-68 209
Msa0451120 MtrunA17_Chr1g0195811 42.381 210 119 2 2 210 3 211 8.36e-57 179
Msa0451120 MtrunA17_Chr1g0195821 42.381 210 119 2 2 210 3 211 2.33e-54 172
Msa0451120 MtrunA17_Chr8g0386711 29.897 194 125 4 1 190 1 187 6.10e-19 82.4
Msa0451120 MtrunA17_Chr3g0095811 68.750 48 15 0 1 48 1 48 3.41e-17 73.2
Msa0451120 MtrunA17_Chr1g0198101 46.970 66 34 1 145 210 1 65 7.53e-14 64.3
Msa0451120 MtrunA17_Chr4g0076681 32.258 155 96 4 15 166 29 177 2.76e-13 66.6
Msa0451120 MtrunA17_Chr8g0386701 25.926 216 146 7 3 207 5 217 1.22e-12 65.1
Msa0451120 MtrunA17_Chr2g0276951 25.714 175 113 4 39 208 42 204 4.11e-12 64.7
Msa0451120 MtrunA17_Chr4g0076691 29.747 158 96 5 15 166 29 177 7.54e-12 62.4
Msa0451120 MtrunA17_Chr0c12g0493651 25.287 174 116 4 39 208 40 203 8.05e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451120 AT2G30860.1 61.682 214 82 0 1 214 1 214 3.79e-100 289
Msa0451120 AT2G30870.1 59.070 215 88 0 1 215 1 215 7.42e-98 283
Msa0451120 AT3G03190.1 51.869 214 102 1 1 213 1 214 2.84e-77 231
Msa0451120 AT2G30860.2 61.039 154 60 0 1 154 1 154 5.79e-67 203
Msa0451120 AT5G17220.1 47.393 211 110 1 1 210 1 211 6.81e-67 205
Msa0451120 AT3G62760.1 47.368 209 107 3 1 207 1 208 2.37e-65 201
Msa0451120 AT1G02930.2 44.444 207 112 3 3 208 4 208 1.04e-54 174
Msa0451120 AT1G02930.1 44.444 207 112 3 3 208 4 208 1.04e-54 174
Msa0451120 AT2G47730.2 42.857 210 117 3 5 212 54 262 7.33e-54 173
Msa0451120 AT2G47730.1 42.857 210 117 3 5 212 54 262 7.33e-54 173
Msa0451120 AT1G02920.1 44.928 207 112 2 3 208 4 209 2.96e-53 170
Msa0451120 AT2G02930.1 43.810 210 113 3 3 208 4 212 2.14e-52 168
Msa0451120 AT1G49860.1 42.365 203 114 2 16 215 19 221 9.39e-52 168
Msa0451120 AT4G02520.1 42.105 209 116 3 3 207 4 211 1.09e-51 166
Msa0451120 AT1G02950.3 40.686 204 118 3 4 205 26 228 3.51e-47 155
Msa0451120 AT1G02950.1 40.686 204 118 3 4 205 26 228 3.51e-47 155
Msa0451120 AT1G02950.2 40.686 204 118 3 4 205 28 230 3.55e-47 155
Msa0451120 AT1G02950.5 40.686 204 118 3 4 205 38 240 3.98e-47 156
Msa0451120 AT1G02940.4 37.799 209 127 3 4 210 40 247 9.78e-46 152
Msa0451120 AT1G02940.1 37.799 209 127 3 4 210 40 247 9.78e-46 152
Msa0451120 AT1G02940.3 37.799 209 127 3 4 210 53 260 1.28e-45 152
Msa0451120 AT1G02940.2 37.799 209 127 3 4 210 65 272 1.42e-45 152
Msa0451120 AT1G02950.4 37.241 145 89 2 62 205 59 202 9.18e-27 102
Msa0451120 AT5G41240.1 28.500 200 137 3 1 194 1 200 6.55e-16 76.3
Msa0451120 AT5G41210.1 26.601 203 143 4 1 197 2 204 5.71e-15 71.6
Msa0451120 AT1G09640.2 27.374 179 120 4 39 214 40 211 4.44e-14 69.7
Msa0451120 AT1G09640.1 27.485 171 116 3 39 208 40 203 6.83e-14 70.1
Msa0451120 AT5G41220.1 27.500 200 139 3 1 194 1 200 7.40e-14 70.1
Msa0451120 AT1G57720.1 27.746 173 113 4 39 208 40 203 9.01e-13 67.0
Msa0451120 AT1G57720.2 27.746 173 113 4 39 208 40 203 9.01e-13 67.0

Find 68 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTGTTTGCACCGTTAA+AGG 0.197508 3_3:-38213933 Msa0451120:CDS
TCAAACTGGGAGAGGAAATT+TGG 0.210954 3_3:-38213750 Msa0451120:CDS
CTCAAACTGAAACTCTTATT+AGG 0.214109 3_3:+38213600 None:intergenic
TCTTGCATTTGGTCACTATT+TGG 0.246792 3_3:-38213777 Msa0451120:CDS
AAAATGTTTGCTTTCTAGTT+TGG 0.257940 3_3:-38213536 Msa0451120:three_prime_UTR
CAGCCTATGGTTCTCCAAAA+AGG 0.287014 3_3:-38215094 Msa0451120:CDS
TCAAACTGAAACTCTTATTA+GGG 0.291179 3_3:+38213601 None:intergenic
CAGTAATAAAATTTGATGTT+TGG 0.306399 3_3:-38213449 Msa0451120:three_prime_UTR
CACTATTTGGTGAATCAAAC+TGG 0.321868 3_3:-38213764 Msa0451120:CDS
GATCTTAGCCATCTTGCATT+TGG 0.333958 3_3:-38213788 Msa0451120:CDS
GACAGAAACATACATATGTT+TGG 0.345557 3_3:+38213483 None:intergenic
AACATGGTTGTGAAAGTTTA+CGG 0.352941 3_3:-38215119 Msa0451120:CDS
GATGGTGATTATACCCTCTA+TGG 0.366109 3_3:-38214849 Msa0451120:intron
TCAATATCTTGAAGTTATAG+TGG 0.388984 3_3:+38215205 None:intergenic
GCACCGTTAAAGGGTGTTCC+CGG 0.396288 3_3:-38213923 Msa0451120:CDS
AACCTGCAGTTTGAGAAAAT+CGG 0.405623 3_3:+38214992 None:intergenic
AACCAAGGAACTGATTTGTT+AGG 0.406691 3_3:-38214046 Msa0451120:CDS
GCCATCTTGGAAGAAGGTTC+TGG 0.407675 3_3:-38213678 Msa0451120:CDS
CTAATAAGAGTTTCAGTTTG+AGG 0.421851 3_3:-38213599 Msa0451120:three_prime_UTR
TCACCGGGAACACCCTTTAA+CGG 0.425189 3_3:+38213920 None:intergenic
GTTCTGTTTGCACCGTTAAA+GGG 0.425408 3_3:-38213932 Msa0451120:CDS
TAGTGGAGGTAAGTGGAAAA+AGG 0.428161 3_3:+38215222 None:intergenic
TTCCTAACAAATCAGTTCCT+TGG 0.434924 3_3:+38214044 None:intergenic
ACCTGCAGTTTGAGAAAATC+GGG 0.447227 3_3:+38214993 None:intergenic
ATGACCAAGCTGTAGATTGC+TGG 0.457280 3_3:+38213959 None:intergenic
TGTTGATATTGATCTCTTCA+AGG 0.461501 3_3:-38215030 Msa0451120:CDS
AGGAAAGACAGTAGAAGAAA+GGG 0.463386 3_3:-38214026 Msa0451120:CDS
TAGGAAAGACAGTAGAAGAA+AGG 0.466401 3_3:-38214027 Msa0451120:CDS
TTAAAGTGCAAATTATAATG+AGG 0.498654 3_3:-38213421 None:intergenic
TCCAGAACCTTCTTCCAAGA+TGG 0.501349 3_3:+38213677 None:intergenic
ATATTAGTAGCAGGCCATCT+TGG 0.502723 3_3:-38213691 Msa0451120:CDS
TATATAAATACCCTGTGTAA+TGG 0.503081 3_3:-38213652 Msa0451120:exon
AAAGTTTACGGACCAGCCTA+TGG 0.503832 3_3:-38215107 Msa0451120:CDS
GAGGAAATTTGGTTAGAGAG+AGG 0.505432 3_3:-38213739 Msa0451120:CDS
GAGGTTCCTCTTGTTCAAGA+TGG 0.514108 3_3:-38214867 Msa0451120:CDS
TGTTGGATATTTACGAGGAA+AGG 0.517509 3_3:-38213856 Msa0451120:CDS
TAGCAGGCCATCTTGGAAGA+AGG 0.522731 3_3:-38213684 Msa0451120:CDS
ACAAGAGGAACCTCTCCAAA+AGG 0.531793 3_3:+38214876 None:intergenic
TCAAAGACAAAGTACTTGGC+TGG 0.539946 3_3:-38213830 Msa0451120:CDS
GCTCTCAAAGACAAAGTACT+TGG 0.540511 3_3:-38213834 Msa0451120:CDS
GTTGATATTGATCTCTTCAA+GGG 0.544872 3_3:-38215029 Msa0451120:CDS
TAAGAGTTTCAGTTTGAGGA+GGG 0.552873 3_3:-38213595 Msa0451120:three_prime_UTR
TTGGTGAATCAAACTGGGAG+AGG 0.560271 3_3:-38213758 Msa0451120:CDS
GAAGTTATAGTGGAGGTAAG+TGG 0.562323 3_3:+38215215 None:intergenic
GATGAGGTGGCTAACCATAG+AGG 0.563044 3_3:+38214835 None:intergenic
AAGAGTTTCAGTTTGAGGAG+GGG 0.565321 3_3:-38213594 Msa0451120:three_prime_UTR
CACAAACAAAACCATTACAC+AGG 0.565632 3_3:+38213641 None:intergenic
GGTGGGATGATATTAGTAGC+AGG 0.571858 3_3:-38213700 Msa0451120:CDS
TGAAAAGCTGAAGAAAGTGT+TGG 0.579668 3_3:-38213873 Msa0451120:CDS
TAATCACCATCTTGAACAAG+AGG 0.579904 3_3:+38214861 None:intergenic
TCACCCAGCAATCTACAGCT+TGG 0.583361 3_3:-38213963 Msa0451120:CDS
AATAGTGACCAAATGCAAGA+TGG 0.590599 3_3:+38213780 None:intergenic
ATGAGGTGGCTAACCATAGA+GGG 0.592466 3_3:+38214836 None:intergenic
ATAAGAGTTTCAGTTTGAGG+AGG 0.597643 3_3:-38213596 Msa0451120:three_prime_UTR
AAAGGGGACTTGTGGAACAA+TGG 0.610264 3_3:-38214009 Msa0451120:CDS
GAAACATGTGAGTGCATGGT+GGG 0.618318 3_3:-38213717 Msa0451120:CDS
AGTAGAAGAAAGGGGACTTG+TGG 0.620270 3_3:-38214017 Msa0451120:CDS
TGACCAAGCTGTAGATTGCT+GGG 0.623969 3_3:+38213960 None:intergenic
TGTGGAACAATGGCTTGAAG+TGG 0.629943 3_3:-38213999 Msa0451120:CDS
AGAGGAAACATGTGAGTGCA+TGG 0.644423 3_3:-38213721 Msa0451120:CDS
GGAAAGACAGTAGAAGAAAG+GGG 0.650622 3_3:-38214025 Msa0451120:CDS
ACTATTTGGTGAATCAAACT+GGG 0.660675 3_3:-38213763 Msa0451120:CDS
ATATCTTGAAGTTATAGTGG+AGG 0.664498 3_3:+38215208 None:intergenic
CAAACTGAAACTCTTATTAG+GGG 0.667095 3_3:+38213602 None:intergenic
GAAAGTGTTGGATATTTACG+AGG 0.669038 3_3:-38213861 Msa0451120:CDS
GCAGAAAAGTACAAGAACCA+AGG 0.682353 3_3:-38214061 Msa0451120:CDS
ACAAACAAAACCATTACACA+GGG 0.686281 3_3:+38213642 None:intergenic
GGAAACATGTGAGTGCATGG+TGG 0.712862 3_3:-38213718 Msa0451120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGGATTATATTTTAAACTT+TGG - chr3_3:38213892-38213911 Msa0451120:CDS 15.0%
!! TAAATAAACAGCAATTTATT+CGG - chr3_3:38214187-38214206 Msa0451120:intron 15.0%
!!! AATTAAATAAGCAGTAATTT+TGG + chr3_3:38214433-38214452 None:intergenic 15.0%
!!! TTGGATTATATTTTAAACTT+TGG - chr3_3:38213892-38213911 Msa0451120:CDS 15.0%
!! TAAATAAACAGCAATTTATT+CGG - chr3_3:38214187-38214206 Msa0451120:intron 15.0%
!!! AATTAAATAAGCAGTAATTT+TGG + chr3_3:38214433-38214452 None:intergenic 15.0%
!! AAATTGCAGAAAATAGTAAA+AGG + chr3_3:38213836-38213855 None:intergenic 20.0%
!!! TATATTTTAAACTTTGGATC+AGG - chr3_3:38213898-38213917 Msa0451120:CDS 20.0%
!!! ATATTTTAAACTTTGGATCA+GGG - chr3_3:38213899-38213918 Msa0451120:CDS 20.0%
!!! CAAATTTTATTACTGAAATC+AGG + chr3_3:38215192-38215211 None:intergenic 20.0%
!! CAGTAATAAAATTTGATGTT+TGG - chr3_3:38215197-38215216 Msa0451120:five_prime_UTR 20.0%
!! AAATTGCAGAAAATAGTAAA+AGG + chr3_3:38213836-38213855 None:intergenic 20.0%
!!! TATATTTTAAACTTTGGATC+AGG - chr3_3:38213898-38213917 Msa0451120:CDS 20.0%
!!! ATATTTTAAACTTTGGATCA+GGG - chr3_3:38213899-38213918 Msa0451120:CDS 20.0%
!!! CAAATTTTATTACTGAAATC+AGG + chr3_3:38215192-38215211 None:intergenic 20.0%
!! CAGTAATAAAATTTGATGTT+TGG - chr3_3:38215197-38215216 Msa0451120:five_prime_UTR 20.0%
! TCAATATCTTGAAGTTATAG+TGG + chr3_3:38213444-38213463 None:intergenic 25.0%
! AAACACATAAATCAGGATAA+GGG + chr3_3:38213984-38214003 None:intergenic 25.0%
! AAAACACATAAATCAGGATA+AGG + chr3_3:38213985-38214004 None:intergenic 25.0%
!!! CTGATTTATGTGTTTTTAGA+GGG - chr3_3:38213989-38214008 Msa0451120:CDS 25.0%
! AGATAATGATTGTTTAAGCT+AGG + chr3_3:38214077-38214096 None:intergenic 25.0%
!! TCGACAAATTTTTATACACT+CGG + chr3_3:38214215-38214234 None:intergenic 25.0%
!! TGAATTTTCTCAATACATTC+AGG - chr3_3:38214382-38214401 Msa0451120:intron 25.0%
!! GAATTTTCTCAATACATTCA+GGG - chr3_3:38214383-38214402 Msa0451120:intron 25.0%
!!! AAACGAATTTTTCAGAATCT+CGG - chr3_3:38214544-38214563 Msa0451120:intron 25.0%
! TATATAAATACCCTGTGTAA+TGG - chr3_3:38214994-38215013 Msa0451120:intron 25.0%
! TCAAACTGAAACTCTTATTA+GGG + chr3_3:38215048-38215067 None:intergenic 25.0%
!!! AAAATGTTTGCTTTCTAGTT+TGG - chr3_3:38215110-38215129 Msa0451120:CDS 25.0%
! TCAATATCTTGAAGTTATAG+TGG + chr3_3:38213444-38213463 None:intergenic 25.0%
! AAACACATAAATCAGGATAA+GGG + chr3_3:38213984-38214003 None:intergenic 25.0%
! AAAACACATAAATCAGGATA+AGG + chr3_3:38213985-38214004 None:intergenic 25.0%
!!! CTGATTTATGTGTTTTTAGA+GGG - chr3_3:38213989-38214008 Msa0451120:CDS 25.0%
! AGATAATGATTGTTTAAGCT+AGG + chr3_3:38214077-38214096 None:intergenic 25.0%
!! TCGACAAATTTTTATACACT+CGG + chr3_3:38214215-38214234 None:intergenic 25.0%
!! TGAATTTTCTCAATACATTC+AGG - chr3_3:38214382-38214401 Msa0451120:intron 25.0%
!! GAATTTTCTCAATACATTCA+GGG - chr3_3:38214383-38214402 Msa0451120:intron 25.0%
!!! AAACGAATTTTTCAGAATCT+CGG - chr3_3:38214544-38214563 Msa0451120:intron 25.0%
! TATATAAATACCCTGTGTAA+TGG - chr3_3:38214994-38215013 Msa0451120:intron 25.0%
! TCAAACTGAAACTCTTATTA+GGG + chr3_3:38215048-38215067 None:intergenic 25.0%
!!! AAAATGTTTGCTTTCTAGTT+TGG - chr3_3:38215110-38215129 Msa0451120:CDS 25.0%
ATATCTTGAAGTTATAGTGG+AGG + chr3_3:38213441-38213460 None:intergenic 30.0%
! TTTTCAGAGACAAAAGATTC+AGG + chr3_3:38213509-38213528 None:intergenic 30.0%
!! ATCTTTTGTCTCTGAAAACA+TGG - chr3_3:38213511-38213530 Msa0451120:three_prime_UTR 30.0%
AACATGGTTGTGAAAGTTTA+CGG - chr3_3:38213527-38213546 Msa0451120:three_prime_UTR 30.0%
TGTTGATATTGATCTCTTCA+AGG - chr3_3:38213616-38213635 Msa0451120:three_prime_UTR 30.0%
GTTGATATTGATCTCTTCAA+GGG - chr3_3:38213617-38213636 Msa0451120:three_prime_UTR 30.0%
GCTGAAAATATAACAGACAT+AGG + chr3_3:38213751-38213770 None:intergenic 30.0%
! CTGTTATATTTTCAGCCTTT+TGG - chr3_3:38213755-38213774 Msa0451120:CDS 30.0%
AAAATAGTAAAAGGATGAGG+TGG + chr3_3:38213827-38213846 None:intergenic 30.0%
CAGAAAATAGTAAAAGGATG+AGG + chr3_3:38213830-38213849 None:intergenic 30.0%
! CCTCTAAAAACACATAAATC+AGG + chr3_3:38213991-38214010 None:intergenic 30.0%
!!! CCTGATTTATGTGTTTTTAG+AGG - chr3_3:38213988-38214007 Msa0451120:CDS 30.0%
TGGTTAATCATCTTCACTTA+AGG - chr3_3:38214020-38214039 Msa0451120:CDS 30.0%
TCTACACTTAACTTATCTCT+CGG - chr3_3:38214094-38214113 Msa0451120:intron 30.0%
ACTATAGTAACACAGCTTTA+GGG - chr3_3:38214406-38214425 Msa0451120:intron 30.0%
GTCATTTGTATCTGTTAATG+TGG - chr3_3:38214490-38214509 Msa0451120:intron 30.0%
!! AACGAATTTTTCAGAATCTC+GGG - chr3_3:38214545-38214564 Msa0451120:intron 30.0%
! ACTATTTGGTGAATCAAACT+GGG - chr3_3:38214883-38214902 Msa0451120:intron 30.0%
ACAAACAAAACCATTACACA+GGG + chr3_3:38215007-38215026 None:intergenic 30.0%
CAAACTGAAACTCTTATTAG+GGG + chr3_3:38215047-38215066 None:intergenic 30.0%
CTCAAACTGAAACTCTTATT+AGG + chr3_3:38215049-38215068 None:intergenic 30.0%
CTAATAAGAGTTTCAGTTTG+AGG - chr3_3:38215047-38215066 Msa0451120:CDS 30.0%
GACAGAAACATACATATGTT+TGG + chr3_3:38215166-38215185 None:intergenic 30.0%
ATATCTTGAAGTTATAGTGG+AGG + chr3_3:38213441-38213460 None:intergenic 30.0%
! TTTTCAGAGACAAAAGATTC+AGG + chr3_3:38213509-38213528 None:intergenic 30.0%
!! ATCTTTTGTCTCTGAAAACA+TGG - chr3_3:38213511-38213530 Msa0451120:three_prime_UTR 30.0%
AACATGGTTGTGAAAGTTTA+CGG - chr3_3:38213527-38213546 Msa0451120:three_prime_UTR 30.0%
TGTTGATATTGATCTCTTCA+AGG - chr3_3:38213616-38213635 Msa0451120:three_prime_UTR 30.0%
GTTGATATTGATCTCTTCAA+GGG - chr3_3:38213617-38213636 Msa0451120:three_prime_UTR 30.0%
GCTGAAAATATAACAGACAT+AGG + chr3_3:38213751-38213770 None:intergenic 30.0%
! CTGTTATATTTTCAGCCTTT+TGG - chr3_3:38213755-38213774 Msa0451120:CDS 30.0%
AAAATAGTAAAAGGATGAGG+TGG + chr3_3:38213827-38213846 None:intergenic 30.0%
CAGAAAATAGTAAAAGGATG+AGG + chr3_3:38213830-38213849 None:intergenic 30.0%
! CCTCTAAAAACACATAAATC+AGG + chr3_3:38213991-38214010 None:intergenic 30.0%
!!! CCTGATTTATGTGTTTTTAG+AGG - chr3_3:38213988-38214007 Msa0451120:CDS 30.0%
TGGTTAATCATCTTCACTTA+AGG - chr3_3:38214020-38214039 Msa0451120:CDS 30.0%
TCTACACTTAACTTATCTCT+CGG - chr3_3:38214094-38214113 Msa0451120:intron 30.0%
ACTATAGTAACACAGCTTTA+GGG - chr3_3:38214406-38214425 Msa0451120:intron 30.0%
GTCATTTGTATCTGTTAATG+TGG - chr3_3:38214490-38214509 Msa0451120:intron 30.0%
!! AACGAATTTTTCAGAATCTC+GGG - chr3_3:38214545-38214564 Msa0451120:intron 30.0%
! ACTATTTGGTGAATCAAACT+GGG - chr3_3:38214883-38214902 Msa0451120:intron 30.0%
ACAAACAAAACCATTACACA+GGG + chr3_3:38215007-38215026 None:intergenic 30.0%
CAAACTGAAACTCTTATTAG+GGG + chr3_3:38215047-38215066 None:intergenic 30.0%
CTCAAACTGAAACTCTTATT+AGG + chr3_3:38215049-38215068 None:intergenic 30.0%
CTAATAAGAGTTTCAGTTTG+AGG - chr3_3:38215047-38215066 Msa0451120:CDS 30.0%
GACAGAAACATACATATGTT+TGG + chr3_3:38215166-38215185 None:intergenic 30.0%
!! GTTGGTATGTCTTTTTGAGA+AGG - chr3_3:38213577-38213596 Msa0451120:three_prime_UTR 35.0%
AACCTGCAGTTTGAGAAAAT+CGG + chr3_3:38213657-38213676 None:intergenic 35.0%
!! ATATTTTCAGCCTTTTGGAG+AGG - chr3_3:38213760-38213779 Msa0451120:CDS 35.0%
TAATCACCATCTTGAACAAG+AGG + chr3_3:38213788-38213807 None:intergenic 35.0%
! CTGATTGGTGATTTACTGAT+TGG - chr3_3:38213873-38213892 Msa0451120:CDS 35.0%
! GGGTGTTACATTTAATTGTG+AGG - chr3_3:38213919-38213938 Msa0451120:CDS 35.0%
!! GTTTTTAGAGGGTAATCAAG+TGG - chr3_3:38214000-38214019 Msa0451120:CDS 35.0%
GTGTCTACTACTTGTCAATT+TGG - chr3_3:38214319-38214338 Msa0451120:intron 35.0%
GACTATAGTAACACAGCTTT+AGG - chr3_3:38214405-38214424 Msa0451120:intron 35.0%
!! AACCAAGGAACTGATTTGTT+AGG - chr3_3:38214600-38214619 Msa0451120:intron 35.0%
TTCCTAACAAATCAGTTCCT+TGG + chr3_3:38214605-38214624 None:intergenic 35.0%
TAGGAAAGACAGTAGAAGAA+AGG - chr3_3:38214619-38214638 Msa0451120:intron 35.0%
AGGAAAGACAGTAGAAGAAA+GGG - chr3_3:38214620-38214639 Msa0451120:intron 35.0%
! TGAAAAGCTGAAGAAAGTGT+TGG - chr3_3:38214773-38214792 Msa0451120:intron 35.0%
!! GAAAGTGTTGGATATTTACG+AGG - chr3_3:38214785-38214804 Msa0451120:intron 35.0%
TGTTGGATATTTACGAGGAA+AGG - chr3_3:38214790-38214809 Msa0451120:intron 35.0%
AATAGTGACCAAATGCAAGA+TGG + chr3_3:38214869-38214888 None:intergenic 35.0%
TCTTGCATTTGGTCACTATT+TGG - chr3_3:38214869-38214888 Msa0451120:CDS 35.0%
! CACTATTTGGTGAATCAAAC+TGG - chr3_3:38214882-38214901 Msa0451120:intron 35.0%
CACAAACAAAACCATTACAC+AGG + chr3_3:38215008-38215027 None:intergenic 35.0%
ATAAGAGTTTCAGTTTGAGG+AGG - chr3_3:38215050-38215069 Msa0451120:CDS 35.0%
TAAGAGTTTCAGTTTGAGGA+GGG - chr3_3:38215051-38215070 Msa0451120:CDS 35.0%
!! GTTGGTATGTCTTTTTGAGA+AGG - chr3_3:38213577-38213596 Msa0451120:three_prime_UTR 35.0%
AACCTGCAGTTTGAGAAAAT+CGG + chr3_3:38213657-38213676 None:intergenic 35.0%
!! ATATTTTCAGCCTTTTGGAG+AGG - chr3_3:38213760-38213779 Msa0451120:CDS 35.0%
TAATCACCATCTTGAACAAG+AGG + chr3_3:38213788-38213807 None:intergenic 35.0%
! CTGATTGGTGATTTACTGAT+TGG - chr3_3:38213873-38213892 Msa0451120:CDS 35.0%
! GGGTGTTACATTTAATTGTG+AGG - chr3_3:38213919-38213938 Msa0451120:CDS 35.0%
!! GTTTTTAGAGGGTAATCAAG+TGG - chr3_3:38214000-38214019 Msa0451120:CDS 35.0%
GTGTCTACTACTTGTCAATT+TGG - chr3_3:38214319-38214338 Msa0451120:intron 35.0%
GACTATAGTAACACAGCTTT+AGG - chr3_3:38214405-38214424 Msa0451120:intron 35.0%
!! AACCAAGGAACTGATTTGTT+AGG - chr3_3:38214600-38214619 Msa0451120:intron 35.0%
TTCCTAACAAATCAGTTCCT+TGG + chr3_3:38214605-38214624 None:intergenic 35.0%
TAGGAAAGACAGTAGAAGAA+AGG - chr3_3:38214619-38214638 Msa0451120:intron 35.0%
AGGAAAGACAGTAGAAGAAA+GGG - chr3_3:38214620-38214639 Msa0451120:intron 35.0%
! TGAAAAGCTGAAGAAAGTGT+TGG - chr3_3:38214773-38214792 Msa0451120:intron 35.0%
!! GAAAGTGTTGGATATTTACG+AGG - chr3_3:38214785-38214804 Msa0451120:intron 35.0%
TGTTGGATATTTACGAGGAA+AGG - chr3_3:38214790-38214809 Msa0451120:intron 35.0%
AATAGTGACCAAATGCAAGA+TGG + chr3_3:38214869-38214888 None:intergenic 35.0%
TCTTGCATTTGGTCACTATT+TGG - chr3_3:38214869-38214888 Msa0451120:CDS 35.0%
! CACTATTTGGTGAATCAAAC+TGG - chr3_3:38214882-38214901 Msa0451120:intron 35.0%
CACAAACAAAACCATTACAC+AGG + chr3_3:38215008-38215027 None:intergenic 35.0%
ATAAGAGTTTCAGTTTGAGG+AGG - chr3_3:38215050-38215069 Msa0451120:CDS 35.0%
TAAGAGTTTCAGTTTGAGGA+GGG - chr3_3:38215051-38215070 Msa0451120:CDS 35.0%
TAGTGGAGGTAAGTGGAAAA+AGG + chr3_3:38213427-38213446 None:intergenic 40.0%
! GAAGTTATAGTGGAGGTAAG+TGG + chr3_3:38213434-38213453 None:intergenic 40.0%
AGCCTATGGTTCTCCAAAAA+GGG - chr3_3:38213553-38213572 Msa0451120:three_prime_UTR 40.0%
! AGACATACCAACACCCTTTT+TGG + chr3_3:38213569-38213588 None:intergenic 40.0%
!! GGTATGTCTTTTTGAGAAGG+AGG - chr3_3:38213580-38213599 Msa0451120:three_prime_UTR 40.0%
ACCTGCAGTTTGAGAAAATC+GGG + chr3_3:38213656-38213675 None:intergenic 40.0%
GATGGTGATTATACCCTCTA+TGG - chr3_3:38213797-38213816 Msa0451120:CDS 40.0%
TGTGCTGTGTAGTTACTGAT+TGG - chr3_3:38213858-38213877 Msa0451120:CDS 40.0%
CACATAAATCAGGATAAGGG+AGG + chr3_3:38213981-38214000 None:intergenic 40.0%
GGCTGAACTTAGAATTACCA+AGG - chr3_3:38214115-38214134 Msa0451120:intron 40.0%
TTAGAATTACCAAGGCCGAT+GGG - chr3_3:38214123-38214142 Msa0451120:intron 40.0%
ACAAGTAGTAGACACATTCG+AGG + chr3_3:38214314-38214333 None:intergenic 40.0%
! GCAGAAAAGTACAAGAACCA+AGG - chr3_3:38214585-38214604 Msa0451120:intron 40.0%
GGAAAGACAGTAGAAGAAAG+GGG - chr3_3:38214621-38214640 Msa0451120:intron 40.0%
TGTTCTGTTTGCACCGTTAA+AGG - chr3_3:38214713-38214732 Msa0451120:intron 40.0%
GTTCTGTTTGCACCGTTAAA+GGG - chr3_3:38214714-38214733 Msa0451120:intron 40.0%
!!! TTCAATCGCTTTTTGGTCAC+CGG + chr3_3:38214745-38214764 None:intergenic 40.0%
!! CACTCTCTTCAATCGCTTTT+TGG + chr3_3:38214752-38214771 None:intergenic 40.0%
! GCTCTCAAAGACAAAGTACT+TGG - chr3_3:38214812-38214831 Msa0451120:intron 40.0%
! TCAAAGACAAAGTACTTGGC+TGG - chr3_3:38214816-38214835 Msa0451120:intron 40.0%
GATCTTAGCCATCTTGCATT+TGG - chr3_3:38214858-38214877 Msa0451120:CDS 40.0%
TCAAACTGGGAGAGGAAATT+TGG - chr3_3:38214896-38214915 Msa0451120:intron 40.0%
GAGGAAATTTGGTTAGAGAG+AGG - chr3_3:38214907-38214926 Msa0451120:intron 40.0%
ATATTAGTAGCAGGCCATCT+TGG - chr3_3:38214955-38214974 Msa0451120:intron 40.0%
AAGAGTTTCAGTTTGAGGAG+GGG - chr3_3:38215052-38215071 Msa0451120:CDS 40.0%
TAGTGGAGGTAAGTGGAAAA+AGG + chr3_3:38213427-38213446 None:intergenic 40.0%
! GAAGTTATAGTGGAGGTAAG+TGG + chr3_3:38213434-38213453 None:intergenic 40.0%
AGCCTATGGTTCTCCAAAAA+GGG - chr3_3:38213553-38213572 Msa0451120:three_prime_UTR 40.0%
! AGACATACCAACACCCTTTT+TGG + chr3_3:38213569-38213588 None:intergenic 40.0%
!! GGTATGTCTTTTTGAGAAGG+AGG - chr3_3:38213580-38213599 Msa0451120:three_prime_UTR 40.0%
ACCTGCAGTTTGAGAAAATC+GGG + chr3_3:38213656-38213675 None:intergenic 40.0%
GATGGTGATTATACCCTCTA+TGG - chr3_3:38213797-38213816 Msa0451120:CDS 40.0%
TGTGCTGTGTAGTTACTGAT+TGG - chr3_3:38213858-38213877 Msa0451120:CDS 40.0%
CACATAAATCAGGATAAGGG+AGG + chr3_3:38213981-38214000 None:intergenic 40.0%
GGCTGAACTTAGAATTACCA+AGG - chr3_3:38214115-38214134 Msa0451120:intron 40.0%
TTAGAATTACCAAGGCCGAT+GGG - chr3_3:38214123-38214142 Msa0451120:intron 40.0%
ACAAGTAGTAGACACATTCG+AGG + chr3_3:38214314-38214333 None:intergenic 40.0%
! GCAGAAAAGTACAAGAACCA+AGG - chr3_3:38214585-38214604 Msa0451120:intron 40.0%
GGAAAGACAGTAGAAGAAAG+GGG - chr3_3:38214621-38214640 Msa0451120:intron 40.0%
TGTTCTGTTTGCACCGTTAA+AGG - chr3_3:38214713-38214732 Msa0451120:intron 40.0%
GTTCTGTTTGCACCGTTAAA+GGG - chr3_3:38214714-38214733 Msa0451120:intron 40.0%
!!! TTCAATCGCTTTTTGGTCAC+CGG + chr3_3:38214745-38214764 None:intergenic 40.0%
!! CACTCTCTTCAATCGCTTTT+TGG + chr3_3:38214752-38214771 None:intergenic 40.0%
! GCTCTCAAAGACAAAGTACT+TGG - chr3_3:38214812-38214831 Msa0451120:intron 40.0%
! TCAAAGACAAAGTACTTGGC+TGG - chr3_3:38214816-38214835 Msa0451120:intron 40.0%
GATCTTAGCCATCTTGCATT+TGG - chr3_3:38214858-38214877 Msa0451120:CDS 40.0%
TCAAACTGGGAGAGGAAATT+TGG - chr3_3:38214896-38214915 Msa0451120:intron 40.0%
GAGGAAATTTGGTTAGAGAG+AGG - chr3_3:38214907-38214926 Msa0451120:intron 40.0%
ATATTAGTAGCAGGCCATCT+TGG - chr3_3:38214955-38214974 Msa0451120:intron 40.0%
AAGAGTTTCAGTTTGAGGAG+GGG - chr3_3:38215052-38215071 Msa0451120:CDS 40.0%
AAAGTTTACGGACCAGCCTA+TGG - chr3_3:38213539-38213558 Msa0451120:three_prime_UTR 45.0%
!! CTTTTTGGAGAACCATAGGC+TGG + chr3_3:38213554-38213573 None:intergenic 45.0%
CAGCCTATGGTTCTCCAAAA+AGG - chr3_3:38213552-38213571 Msa0451120:three_prime_UTR 45.0%
!! CACCCTTTTTGGAGAACCAT+AGG + chr3_3:38213558-38213577 None:intergenic 45.0%
! TGGTTCTCCAAAAAGGGTGT+TGG - chr3_3:38213559-38213578 Msa0451120:three_prime_UTR 45.0%
! ACCCGATTTTCTCAAACTGC+AGG - chr3_3:38213652-38213671 Msa0451120:exon 45.0%
ACAAGAGGAACCTCTCCAAA+AGG + chr3_3:38213773-38213792 None:intergenic 45.0%
GAGGTTCCTCTTGTTCAAGA+TGG - chr3_3:38213779-38213798 Msa0451120:CDS 45.0%
ATGAGGTGGCTAACCATAGA+GGG + chr3_3:38213813-38213832 None:intergenic 45.0%
CTTAGAATTACCAAGGCCGA+TGG - chr3_3:38214122-38214141 Msa0451120:intron 45.0%
TATAACCCTCTCGTTCCCAT+CGG + chr3_3:38214141-38214160 None:intergenic 45.0%
AGTAGAAGAAAGGGGACTTG+TGG - chr3_3:38214629-38214648 Msa0451120:intron 45.0%
AAAGGGGACTTGTGGAACAA+TGG - chr3_3:38214637-38214656 Msa0451120:intron 45.0%
TGTGGAACAATGGCTTGAAG+TGG - chr3_3:38214647-38214666 Msa0451120:intron 45.0%
TGACCAAGCTGTAGATTGCT+GGG + chr3_3:38214689-38214708 None:intergenic 45.0%
ATGACCAAGCTGTAGATTGC+TGG + chr3_3:38214690-38214709 None:intergenic 45.0%
!!! TCAATCGCTTTTTGGTCACC+GGG + chr3_3:38214744-38214763 None:intergenic 45.0%
TTGGTGAATCAAACTGGGAG+AGG - chr3_3:38214888-38214907 Msa0451120:intron 45.0%
AGAGGAAACATGTGAGTGCA+TGG - chr3_3:38214925-38214944 Msa0451120:intron 45.0%
GAAACATGTGAGTGCATGGT+GGG - chr3_3:38214929-38214948 Msa0451120:intron 45.0%
GGTGGGATGATATTAGTAGC+AGG - chr3_3:38214946-38214965 Msa0451120:intron 45.0%
TCCAGAACCTTCTTCCAAGA+TGG + chr3_3:38214972-38214991 None:intergenic 45.0%
AAAGTTTACGGACCAGCCTA+TGG - chr3_3:38213539-38213558 Msa0451120:three_prime_UTR 45.0%
!! CTTTTTGGAGAACCATAGGC+TGG + chr3_3:38213554-38213573 None:intergenic 45.0%
CAGCCTATGGTTCTCCAAAA+AGG - chr3_3:38213552-38213571 Msa0451120:three_prime_UTR 45.0%
!! CACCCTTTTTGGAGAACCAT+AGG + chr3_3:38213558-38213577 None:intergenic 45.0%
! TGGTTCTCCAAAAAGGGTGT+TGG - chr3_3:38213559-38213578 Msa0451120:three_prime_UTR 45.0%
! ACCCGATTTTCTCAAACTGC+AGG - chr3_3:38213652-38213671 Msa0451120:exon 45.0%
ACAAGAGGAACCTCTCCAAA+AGG + chr3_3:38213773-38213792 None:intergenic 45.0%
GAGGTTCCTCTTGTTCAAGA+TGG - chr3_3:38213779-38213798 Msa0451120:CDS 45.0%
ATGAGGTGGCTAACCATAGA+GGG + chr3_3:38213813-38213832 None:intergenic 45.0%
CTTAGAATTACCAAGGCCGA+TGG - chr3_3:38214122-38214141 Msa0451120:intron 45.0%
TATAACCCTCTCGTTCCCAT+CGG + chr3_3:38214141-38214160 None:intergenic 45.0%
AGTAGAAGAAAGGGGACTTG+TGG - chr3_3:38214629-38214648 Msa0451120:intron 45.0%
AAAGGGGACTTGTGGAACAA+TGG - chr3_3:38214637-38214656 Msa0451120:intron 45.0%
TGTGGAACAATGGCTTGAAG+TGG - chr3_3:38214647-38214666 Msa0451120:intron 45.0%
TGACCAAGCTGTAGATTGCT+GGG + chr3_3:38214689-38214708 None:intergenic 45.0%
ATGACCAAGCTGTAGATTGC+TGG + chr3_3:38214690-38214709 None:intergenic 45.0%
!!! TCAATCGCTTTTTGGTCACC+GGG + chr3_3:38214744-38214763 None:intergenic 45.0%
TTGGTGAATCAAACTGGGAG+AGG - chr3_3:38214888-38214907 Msa0451120:intron 45.0%
AGAGGAAACATGTGAGTGCA+TGG - chr3_3:38214925-38214944 Msa0451120:intron 45.0%
GAAACATGTGAGTGCATGGT+GGG - chr3_3:38214929-38214948 Msa0451120:intron 45.0%
GGTGGGATGATATTAGTAGC+AGG - chr3_3:38214946-38214965 Msa0451120:intron 45.0%
TCCAGAACCTTCTTCCAAGA+TGG + chr3_3:38214972-38214991 None:intergenic 45.0%
GATGAGGTGGCTAACCATAG+AGG + chr3_3:38213814-38213833 None:intergenic 50.0%
TCACCCAGCAATCTACAGCT+TGG - chr3_3:38214683-38214702 Msa0451120:intron 50.0%
TCACCGGGAACACCCTTTAA+CGG + chr3_3:38214729-38214748 None:intergenic 50.0%
GGAAACATGTGAGTGCATGG+TGG - chr3_3:38214928-38214947 Msa0451120:intron 50.0%
TAGCAGGCCATCTTGGAAGA+AGG - chr3_3:38214962-38214981 Msa0451120:intron 50.0%
GCCATCTTGGAAGAAGGTTC+TGG - chr3_3:38214968-38214987 Msa0451120:intron 50.0%
GATGAGGTGGCTAACCATAG+AGG + chr3_3:38213814-38213833 None:intergenic 50.0%
TCACCCAGCAATCTACAGCT+TGG - chr3_3:38214683-38214702 Msa0451120:intron 50.0%
TCACCGGGAACACCCTTTAA+CGG + chr3_3:38214729-38214748 None:intergenic 50.0%
GGAAACATGTGAGTGCATGG+TGG - chr3_3:38214928-38214947 Msa0451120:intron 50.0%
TAGCAGGCCATCTTGGAAGA+AGG - chr3_3:38214962-38214981 Msa0451120:intron 50.0%
GCCATCTTGGAAGAAGGTTC+TGG - chr3_3:38214968-38214987 Msa0451120:intron 50.0%
!! GCACCGTTAAAGGGTGTTCC+CGG - chr3_3:38214723-38214742 Msa0451120:intron 55.0%
!! GCACCGTTAAAGGGTGTTCC+CGG - chr3_3:38214723-38214742 Msa0451120:intron 55.0%
CAAGGCCGATGGGAACGAGA+GGG - chr3_3:38214133-38214152 Msa0451120:intron 60.0%
CAAGGCCGATGGGAACGAGA+GGG - chr3_3:38214133-38214152 Msa0451120:intron 60.0%
CCTCTCGTTCCCATCGGCCT+TGG + chr3_3:38214135-38214154 None:intergenic 65.0%
CCAAGGCCGATGGGAACGAG+AGG - chr3_3:38214132-38214151 Msa0451120:intron 65.0%
CCTCTCGTTCCCATCGGCCT+TGG + chr3_3:38214135-38214154 None:intergenic 65.0%
CCAAGGCCGATGGGAACGAG+AGG - chr3_3:38214132-38214151 Msa0451120:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 38213424 38215244 38213424 ID=Msa0451120;Name=Msa0451120
chr3_3 mRNA 38213424 38215244 38213424 ID=Msa0451120-mRNA-1;Parent=Msa0451120;Name=Msa0451120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=106|1|1|1|1|1|3|231|215
chr3_3 exon 38213424 38214109 38213424 ID=Msa0451120-mRNA-1:exon:6891;Parent=Msa0451120-mRNA-1
chr3_3 exon 38214850 38214898 38214850 ID=Msa0451120-mRNA-1:exon:6890;Parent=Msa0451120-mRNA-1
chr3_3 exon 38214995 38215244 38214995 ID=Msa0451120-mRNA-1:exon:6889;Parent=Msa0451120-mRNA-1
chr3_3 five_prime_UTR 38215139 38215244 38215139 ID=Msa0451120-mRNA-1:five_prime_utr;Parent=Msa0451120-mRNA-1
chr3_3 CDS 38214995 38215138 38214995 ID=Msa0451120-mRNA-1:cds;Parent=Msa0451120-mRNA-1
chr3_3 CDS 38214850 38214898 38214850 ID=Msa0451120-mRNA-1:cds;Parent=Msa0451120-mRNA-1
chr3_3 CDS 38213655 38214109 38213655 ID=Msa0451120-mRNA-1:cds;Parent=Msa0451120-mRNA-1
chr3_3 three_prime_UTR 38213424 38213654 38213424 ID=Msa0451120-mRNA-1:three_prime_utr;Parent=Msa0451120-mRNA-1
Gene Sequence

>Msa0451120

ATGGTTGTGAAAGTTTACGGACCAGCCTATGGTTCTCCAAAAAGGGTGTTGGTATGTCTTTTTGAGAAGGAGGTTGAGTTTGAAGCTGTTGATATTGATCTCTTCAAGGGAGAGCATAAACAACCCGATTTTCTCAAACTGCAGCCTTTTGGAGAGGTTCCTCTTGTTCAAGATGGTGATTATACCCTCTATGAATCTCGGGCAATAATCAGATACTATGCAGAAAAGTACAAGAACCAAGGAACTGATTTGTTAGGAAAGACAGTAGAAGAAAGGGGACTTGTGGAACAATGGCTTGAAGTGGAAGCACATAACTTTCACCCAGCAATCTACAGCTTGGTCATCAATGTTCTGTTTGCACCGTTAAAGGGTGTTCCCGGTGACCAAAAAGCGATTGAAGAGAGTGATGAAAAGCTGAAGAAAGTGTTGGATATTTACGAGGAAAGGCTCTCAAAGACAAAGTACTTGGCTGGCGATTTCTTTAGTCTTGCTGATCTTAGCCATCTTGCATTTGGTCACTATTTGGTGAATCAAACTGGGAGAGGAAATTTGGTTAGAGAGAGGAAACATGTGAGTGCATGGTGGGATGATATTAGTAGCAGGCCATCTTGGAAGAAGGTTCTGGAACTATATAAATACCCTGTGTAA

Protein sequence

>Msa0451120

MVVKVYGPAYGSPKRVLVCLFEKEVEFEAVDIDLFKGEHKQPDFLKLQPFGEVPLVQDGDYTLYESRAIIRYYAEKYKNQGTDLLGKTVEERGLVEQWLEVEAHNFHPAIYSLVINVLFAPLKGVPGDQKAIEESDEKLKKVLDIYEERLSKTKYLAGDFFSLADLSHLAFGHYLVNQTGRGNLVRERKHVSAWWDDISSRPSWKKVLELYKYPV*