AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887250 MtrunA17_Chr6g0466891 93.304 224 11 1 1 224 1 220 4.83e-134 375
Msa0887250 MtrunA17_Chr1g0201251 74.208 221 51 3 6 224 5 221 1.71e-110 316
Msa0887250 MtrunA17_Chr3g0090241 80.769 130 24 1 6 134 5 134 1.14e-75 225
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887250 AT2G30060.1 66.995 203 64 3 6 206 11 212 5.71e-90 264
Msa0887250 AT5G58590.1 71.512 172 48 1 8 178 10 181 3.16e-88 259
Msa0887250 AT1G07140.1 71.676 173 48 1 6 177 9 181 2.04e-87 258

Find 74 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTTTCCTCTTTATTC+AGG 0.146603 6_1:+48467644 None:intergenic
GAGAGAGTGAAGGGGTTAAT+AGG 0.156539 6_1:+48470124 None:intergenic
AGAGAGTGAAGGGGTTAATA+GGG 0.238930 6_1:+48470125 None:intergenic
TTAGAGAGAGAAAGTGATAA+AGG 0.250963 6_1:+48470092 None:intergenic
ATCATTGAGATTGGCGCTTT+TGG 0.269745 6_1:-48467252 Msa0887250:three_prime_UTR
ATTCATAACTTGAAATTTGC+TGG 0.303386 6_1:-48466971 Msa0887250:three_prime_UTR
CTTCAACGCTCAAATTCTTA+AGG 0.306134 6_1:+48467599 None:intergenic
CTCTCATAGTCCTAGTCTTC+AGG 0.314034 6_1:-48467358 Msa0887250:three_prime_UTR
CGCTCCGATCATTCAACTTC+AGG 0.321264 6_1:-48469991 Msa0887250:CDS
GTTGGTTTGGTGTAGGGATG+GGG 0.368624 6_1:-48467169 Msa0887250:three_prime_UTR
CTTGCTTTCCTCTTTATTCA+GGG 0.373773 6_1:+48467645 None:intergenic
TGTTGGTTTGGTGTAGGGAT+GGG 0.374621 6_1:-48467170 Msa0887250:three_prime_UTR
TAGAGAGAGAAAGTGATAAA+GGG 0.378430 6_1:+48470093 None:intergenic
CGGGTTTGAATCATTGAGAT+TGG 0.383808 6_1:-48467261 Msa0887250:three_prime_UTR
CTTAAGAATTTGAGCGTTGA+AGG 0.385239 6_1:-48467598 Msa0887250:CDS
GATTCCTTTCCTTGTCAAAT+CGG 0.395157 6_1:+48469368 None:intergenic
CAAGGCAATATGGCAAAGTT+TGG 0.402268 6_1:-48467413 Msa0887250:three_prime_UTR
TATGATGTGACTGAACAAAA+TGG 0.406490 6_1:-48466940 Msa0887250:three_prime_UTR
ATAAGGTTACCGGAAAAGTT+AGG 0.420424 6_1:-48469303 Msa0887250:CDS
GGTTTGGTGTAGGGATGGGG+AGG 0.424673 6_1:-48467166 Msa0887250:three_prime_UTR
TGAGGCGTCGTCATCAAAAT+CGG 0.443575 6_1:+48466995 None:intergenic
GGAATGAGAAATCTTGTGTT+TGG 0.452376 6_1:-48468805 Msa0887250:CDS
GGCAATATGGCAAAGTTTGG+TGG 0.471716 6_1:-48467410 Msa0887250:three_prime_UTR
TCAATACTCACTGAGATGAT+TGG 0.476949 6_1:+48469243 None:intergenic
ATGTTGGTTTGGTGTAGGGA+TGG 0.478068 6_1:-48467171 Msa0887250:three_prime_UTR
TGAATTATTGTCAGCAAGGT+TGG 0.479133 6_1:-48467293 Msa0887250:three_prime_UTR
TGCTGAATCCCTGAATAAAG+AGG 0.481374 6_1:-48467653 Msa0887250:CDS
CAGGAAGTCGCTGTTTCCAC+TGG 0.489504 6_1:-48469972 Msa0887250:CDS
TTGAACGAGTCATGTTGGTT+TGG 0.491688 6_1:-48467182 Msa0887250:three_prime_UTR
ATCTTCCTCTTCGTGATGAT+CGG 0.492706 6_1:+48470052 None:intergenic
CAATGGAAGGAACGAGGGGC+AGG 0.498194 6_1:-48469346 Msa0887250:CDS
GTTTCTAGAGAGAGAGTGAA+GGG 0.499952 6_1:+48470115 None:intergenic
TTGACAAGGAAAGGAATCAA+TGG 0.502493 6_1:-48469363 Msa0887250:CDS
GCCGGTGTCTTCTTCATCGC+CGG 0.504644 6_1:+48470022 None:intergenic
AGGGATGGGGAGGGTGCAGT+CGG 0.505751 6_1:-48467156 Msa0887250:three_prime_UTR
GAGTCATGTTGGTTTGGTGT+AGG 0.509708 6_1:-48467176 Msa0887250:three_prime_UTR
GAAAACCGAGGAGAAAACTA+AGG 0.512105 6_1:-48467533 Msa0887250:CDS
ATGACTGTGCAAGAGCATGC+TGG 0.525554 6_1:-48468827 Msa0887250:CDS
GTGTCTTCTTCATCGCCGGC+GGG 0.532371 6_1:+48470026 None:intergenic
AGTCATGTTGGTTTGGTGTA+GGG 0.534793 6_1:-48467175 Msa0887250:three_prime_UTR
GAAAAGAAAGTCGAAGAGCC+TGG 0.535131 6_1:-48467472 Msa0887250:CDS
GGGATGGGGAGGGTGCAGTC+GGG 0.540876 6_1:-48467155 Msa0887250:three_prime_UTR
TTCTTCATCTTCTTCACCAG+TGG 0.541787 6_1:+48469956 None:intergenic
GTTTGGTGTAGGGATGGGGA+GGG 0.550590 6_1:-48467165 Msa0887250:three_prime_UTR
TTAAGAATTTGAGCGTTGAA+GGG 0.557314 6_1:-48467597 Msa0887250:CDS
ATCTTGTGTTTGGCACGCGA+AGG 0.558670 6_1:-48468795 Msa0887250:CDS
TTGTTGAATTATTGTCAGCA+AGG 0.560394 6_1:-48467297 Msa0887250:three_prime_UTR
GGTGTCTTCTTCATCGCCGG+CGG 0.563701 6_1:+48470025 None:intergenic
TGACTGTGCAAGAGCATGCT+GGG 0.564943 6_1:-48468826 Msa0887250:CDS
CATAATCAAGCAGATGAACC+AGG 0.570876 6_1:+48467454 None:intergenic
ACTTCCTGAAGTTGAATGAT+CGG 0.576817 6_1:+48469987 None:intergenic
GATCGGAGCGATTTGAGCGC+CGG 0.577295 6_1:+48470004 None:intergenic
CCTGAATAAAGAGGAAAGCA+AGG 0.588948 6_1:-48467644 Msa0887250:CDS
CTTAAGGAGATCAGCAGCAG+TGG 0.591678 6_1:+48467615 None:intergenic
GGTTTCTAGAGAGAGAGTGA+AGG 0.610248 6_1:+48470114 None:intergenic
TGTACCGATTTGACAAGGAA+AGG 0.611212 6_1:-48469372 Msa0887250:CDS
AGGAATCAATGGAAGGAACG+AGG 0.615095 6_1:-48469352 Msa0887250:CDS
CACGCGAAGGACTTTGCTGA+TGG 0.615394 6_1:-48468782 Msa0887250:CDS
CAAGGAAAGGAATCAATGGA+AGG 0.619001 6_1:-48469359 Msa0887250:CDS
GGAATCAATGGAAGGAACGA+GGG 0.620247 6_1:-48469351 Msa0887250:CDS
TGCTGACAATAATTCAACAA+AGG 0.622003 6_1:+48467300 None:intergenic
AATTTCAAGTTATGAATCTG+AGG 0.624425 6_1:+48466977 None:intergenic
GAAAGACGAAGAGAAATCTG+AGG 0.628935 6_1:-48467557 Msa0887250:CDS
TTTCTAGAGAGAGAGTGAAG+GGG 0.635471 6_1:+48470116 None:intergenic
TTTGTTGCTACGTTATTGAG+TGG 0.649884 6_1:-48467330 Msa0887250:three_prime_UTR
TGAGAGAGTATTGATAAGAG+TGG 0.665618 6_1:+48467375 None:intergenic
GAAGAGGAAGATGTTCCCGC+CGG 0.668991 6_1:-48470041 Msa0887250:CDS
GAATCAATGGAAGGAACGAG+GGG 0.670028 6_1:-48469350 Msa0887250:CDS
AAGCACCGATCATCACGAAG+AGG 0.672214 6_1:-48470057 Msa0887250:CDS
GTAGAAGTAAGTACAAACAA+AGG 0.677270 6_1:-48467127 Msa0887250:three_prime_UTR
TATTGATAAGAGTGGCACGA+AGG 0.684541 6_1:+48467383 None:intergenic
GAAACTGTACCGATTTGACA+AGG 0.698764 6_1:-48469377 Msa0887250:CDS
GAAATCTGAGGAGAAAACCG+AGG 0.701527 6_1:-48467545 Msa0887250:CDS
GCCGGCGATGAAGAAGACAC+CGG 0.712296 6_1:-48470023 Msa0887250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATCACAAAAAA+CGG + chr6_1:48467417-48467436 None:intergenic 10.0%
!!! TTTTTATTAAGTGATTATTT+TGG - chr6_1:48467429-48467448 Msa0887250:three_prime_UTR 10.0%
!!! TTTTATTAAGTGATTATTTT+GGG - chr6_1:48467430-48467449 Msa0887250:three_prime_UTR 10.0%
!!! ATTTTTATTTGATTTTTGAT+TGG - chr6_1:48468155-48468174 Msa0887250:intron 10.0%
!! AAAAAATTACAACAAAAAAG+TGG + chr6_1:48467167-48467186 None:intergenic 15.0%
!! TGAATAAAAGAAAAAGAAAA+AGG + chr6_1:48468368-48468387 None:intergenic 15.0%
!! ATAGGTTATACATAAATATT+TGG - chr6_1:48468557-48468576 Msa0887250:intron 15.0%
!! TTATTTGAATAAACAACTTA+TGG + chr6_1:48468651-48468670 None:intergenic 15.0%
!! ATAAGTTGTTTATTCAAATA+AGG - chr6_1:48468650-48468669 Msa0887250:intron 15.0%
!! AATGAATTAAATCATTATAC+GGG + chr6_1:48469229-48469248 None:intergenic 15.0%
!! CAATGAATTAAATCATTATA+CGG + chr6_1:48469230-48469249 None:intergenic 15.0%
!! CTTCTAATTAAAGATGTTTA+TGG + chr6_1:48468120-48468139 None:intergenic 20.0%
!!! ATCTTTAATTAGAAGTGTTA+TGG - chr6_1:48468125-48468144 Msa0887250:intron 20.0%
!! CTGATTAATCTAAGTTAAAT+TGG - chr6_1:48468716-48468735 Msa0887250:intron 20.0%
!!! ATTTTACAATCAAACTTAAG+AGG + chr6_1:48468785-48468804 None:intergenic 20.0%
!! TTGATTGTAAAATAACTTGA+TGG - chr6_1:48468792-48468811 Msa0887250:CDS 20.0%
!!! TGTGATTTTGTTGTGAATAT+TGG - chr6_1:48467258-48467277 Msa0887250:three_prime_UTR 25.0%
!!! GTGATTTTTGTTGTGAATTT+TGG - chr6_1:48467289-48467308 Msa0887250:three_prime_UTR 25.0%
!! GGTAAAGTTAATGTGATTTT+TGG - chr6_1:48467310-48467329 Msa0887250:three_prime_UTR 25.0%
!!! TGATTTTTGGTAAAGCTTAT+GGG - chr6_1:48467323-48467342 Msa0887250:three_prime_UTR 25.0%
!!! TTGCAATGTTTTTGTGATTT+TGG - chr6_1:48467514-48467533 Msa0887250:CDS 25.0%
! CAAGATCAATAAACAATCAA+AGG + chr6_1:48467947-48467966 None:intergenic 25.0%
!! TCATTTTCTCAAATTATCAC+CGG + chr6_1:48468021-48468040 None:intergenic 25.0%
!!! GATTTTTGATTGGTTTTTGA+TGG - chr6_1:48468165-48468184 Msa0887250:intron 25.0%
!!! TGTGTTTGATTGTTTTGTTT+TGG - chr6_1:48468195-48468214 Msa0887250:intron 25.0%
!!! ACATATTCACTAGTTGTTTT+CGG - chr6_1:48468490-48468509 Msa0887250:intron 25.0%
!!! TTTATTTTTATAAGCACTCC+AGG - chr6_1:48468513-48468532 Msa0887250:intron 25.0%
!!! GATTTTTATTTGACATTCCT+TGG - chr6_1:48468686-48468705 Msa0887250:intron 25.0%
!! ATAATTTGTACATGATCGTA+TGG + chr6_1:48468894-48468913 None:intergenic 25.0%
!! CTAATTTTGTAAGGTAGAAT+AGG + chr6_1:48469044-48469063 None:intergenic 25.0%
!!! GTTTTTTAAATGTTTGTCCT+TGG - chr6_1:48469071-48469090 Msa0887250:intron 25.0%
!! TTAACTAGTATTTTGTGGAT+GGG - chr6_1:48469150-48469169 Msa0887250:intron 25.0%
! ATATGCCATAAATTTACACT+CGG + chr6_1:48469325-48469344 None:intergenic 25.0%
!! ATTTTATAGACTCAAATCAC+TGG - chr6_1:48469983-48470002 Msa0887250:CDS 25.0%
!!! AATTTCAAGTTATGAATCTG+AGG + chr6_1:48470086-48470105 None:intergenic 25.0%
! ATTCATAACTTGAAATTTGC+TGG - chr6_1:48470089-48470108 Msa0887250:five_prime_UTR 25.0%
TAGAGAGAGAAAGTGATAAA+GGG + chr6_1:48466970-48466989 None:intergenic 30.0%
TTAGAGAGAGAAAGTGATAA+AGG + chr6_1:48466971-48466990 None:intergenic 30.0%
!! GATGTTTTTGTCGTGAATTT+TGG - chr6_1:48467226-48467245 Msa0887250:three_prime_UTR 30.0%
!!! GTGATTTTTGGTAAAGCTTA+TGG - chr6_1:48467322-48467341 Msa0887250:three_prime_UTR 30.0%
!! TGGGATTTTGTTCTGAATTT+CGG - chr6_1:48467342-48467361 Msa0887250:three_prime_UTR 30.0%
! TTTTGTATATTCTTGTTGCG+AGG - chr6_1:48467612-48467631 Msa0887250:CDS 30.0%
!!! TGTGAAGTTTTTGAAGCATA+AGG - chr6_1:48467740-48467759 Msa0887250:intron 30.0%
!!! TTTTTGAAGCATAAGGTTAC+CGG - chr6_1:48467747-48467766 Msa0887250:intron 30.0%
TCTATGAATCATTGACACAT+CGG - chr6_1:48467847-48467866 Msa0887250:intron 30.0%
ATTGATGTAAACACATGTGT+TGG - chr6_1:48467899-48467918 Msa0887250:intron 30.0%
TTGTAAACTATGTTCAGACT+TGG - chr6_1:48468399-48468418 Msa0887250:intron 30.0%
GTTCGTGAAAACAACTTAAT+AGG - chr6_1:48468539-48468558 Msa0887250:intron 30.0%
GTGCTGTATTAGTATTTGTT+AGG - chr6_1:48468757-48468776 Msa0887250:CDS 30.0%
ATACCATAGGATCAAGTAAA+AGG + chr6_1:48468835-48468854 None:intergenic 30.0%
! TTTTACTTGATCCTATGGTA+TGG - chr6_1:48468834-48468853 Msa0887250:CDS 30.0%
ACCTTACAAAATTAGTGTAC+AGG - chr6_1:48469049-48469068 Msa0887250:intron 30.0%
! ACCTGTACACTAATTTTGTA+AGG + chr6_1:48469053-48469072 None:intergenic 30.0%
!! GGAAAAGCATTGTAAAGAAA+AGG + chr6_1:48469111-48469130 None:intergenic 30.0%
! GTTAACTAGTATTTTGTGGA+TGG - chr6_1:48469149-48469168 Msa0887250:intron 30.0%
AGAACAATATAAGCCTGAAA+AGG + chr6_1:48469286-48469305 None:intergenic 30.0%
ATTTACACTCGGCAATTAAT+AGG + chr6_1:48469314-48469333 None:intergenic 30.0%
AATTGCCGAGTGTAAATTTA+TGG - chr6_1:48469317-48469336 Msa0887250:CDS 30.0%
!! TTAAGAATTTGAGCGTTGAA+GGG - chr6_1:48469463-48469482 Msa0887250:intron 30.0%
! ATGTGTTCATATTTTCGACA+AGG - chr6_1:48469629-48469648 Msa0887250:intron 30.0%
! ATATTTTCGACAAGGCAATA+TGG - chr6_1:48469637-48469656 Msa0887250:intron 30.0%
TGCTGACAATAATTCAACAA+AGG + chr6_1:48469763-48469782 None:intergenic 30.0%
TTGTTGAATTATTGTCAGCA+AGG - chr6_1:48469763-48469782 Msa0887250:intron 30.0%
GTAGAAGTAAGTACAAACAA+AGG - chr6_1:48469933-48469952 Msa0887250:intron 30.0%
TATGATGTGACTGAACAAAA+TGG - chr6_1:48470120-48470139 Msa0887250:five_prime_UTR 30.0%
ACTTCCTGAAGTTGAATGAT+CGG + chr6_1:48467076-48467095 None:intergenic 35.0%
GATTCCTTTCCTTGTCAAAT+CGG + chr6_1:48467695-48467714 None:intergenic 35.0%
TTGACAAGGAAAGGAATCAA+TGG - chr6_1:48467697-48467716 Msa0887250:intron 35.0%
ATAAGGTTACCGGAAAAGTT+AGG - chr6_1:48467757-48467776 Msa0887250:intron 35.0%
! CATAACAAGCCTAACTTTTC+CGG + chr6_1:48467769-48467788 None:intergenic 35.0%
TCAATACTCACTGAGATGAT+TGG + chr6_1:48467820-48467839 None:intergenic 35.0%
AACAATCAAAGGAGAGAATC+CGG + chr6_1:48467936-48467955 None:intergenic 35.0%
AATTGAGTGTAAACACGTGT+CGG - chr6_1:48468044-48468063 Msa0887250:intron 35.0%
GGAATGAGAAATCTTGTGTT+TGG - chr6_1:48468255-48468274 Msa0887250:intron 35.0%
TTGGCTTAACTCACTGAATT+TGG - chr6_1:48468735-48468754 Msa0887250:CDS 35.0%
! CTTCCTTTTACTTGATCCTA+TGG - chr6_1:48468829-48468848 Msa0887250:CDS 35.0%
ACGTTTGAATTCCATACCAT+AGG + chr6_1:48468848-48468867 None:intergenic 35.0%
TAAGTTTGTGACATTACCGA+AGG - chr6_1:48468962-48468981 Msa0887250:intron 35.0%
GTAAGGTAGAATAGGATCAT+TGG + chr6_1:48469036-48469055 None:intergenic 35.0%
! ATGCTTTTCCCTGCTTATAA+TGG - chr6_1:48469121-48469140 Msa0887250:intron 35.0%
! TGCTTTTCCCTGCTTATAAT+GGG - chr6_1:48469122-48469141 Msa0887250:intron 35.0%
! CAGGGTTAACTAGTATTTTG+TGG - chr6_1:48469145-48469164 Msa0887250:intron 35.0%
! TTTTACCTAACATGATCCTG+TGG - chr6_1:48469183-48469202 Msa0887250:intron 35.0%
GTGAAATGTTTGCAATCCAA+TGG + chr6_1:48469264-48469283 None:intergenic 35.0%
! TGCAAACATTTCACCTTTTC+AGG - chr6_1:48469270-48469289 Msa0887250:CDS 35.0%
CTTGCTTTCCTCTTTATTCA+GGG + chr6_1:48469418-48469437 None:intergenic 35.0%
CTTCAACGCTCAAATTCTTA+AGG + chr6_1:48469464-48469483 None:intergenic 35.0%
!! CTTAAGAATTTGAGCGTTGA+AGG - chr6_1:48469462-48469481 Msa0887250:intron 35.0%
!! TTTCTCCTTAGTTTTCTCCT+CGG + chr6_1:48469535-48469554 None:intergenic 35.0%
ACACCAGAAAAAGAAAGCAA+GGG - chr6_1:48469558-48469577 Msa0887250:intron 35.0%
!! TGAGAGAGTATTGATAAGAG+TGG + chr6_1:48469688-48469707 None:intergenic 35.0%
ACAAAAACAACCTGAAGACT+AGG + chr6_1:48469715-48469734 None:intergenic 35.0%
TTTGTTGCTACGTTATTGAG+TGG - chr6_1:48469730-48469749 Msa0887250:intron 35.0%
TGAATTATTGTCAGCAAGGT+TGG - chr6_1:48469767-48469786 Msa0887250:intron 35.0%
! GAATTTTGAACGAGTCATGT+TGG - chr6_1:48469873-48469892 Msa0887250:intron 35.0%
! TTTCTAGAGAGAGAGTGAAG+GGG + chr6_1:48466947-48466966 None:intergenic 40.0%
! GTTTCTAGAGAGAGAGTGAA+GGG + chr6_1:48466948-48466967 None:intergenic 40.0%
ATCTTCCTCTTCGTGATGAT+CGG + chr6_1:48467011-48467030 None:intergenic 40.0%
TTCTTCATCTTCTTCACCAG+TGG + chr6_1:48467107-48467126 None:intergenic 40.0%
!! GAAACTGTACCGATTTGACA+AGG - chr6_1:48467683-48467702 Msa0887250:CDS 40.0%
!! TGTACCGATTTGACAAGGAA+AGG - chr6_1:48467688-48467707 Msa0887250:CDS 40.0%
CAAGGAAAGGAATCAATGGA+AGG - chr6_1:48467701-48467720 Msa0887250:intron 40.0%
AATCATTGACACATCGGCAT+TGG - chr6_1:48467853-48467872 Msa0887250:intron 40.0%
!! TGTGTTGGTGTTGTAGATAC+CGG - chr6_1:48467914-48467933 Msa0887250:intron 40.0%
!! TGCTCTTGCACAGTCATTTT+AGG + chr6_1:48468230-48468249 None:intergenic 40.0%
!! GTTCAGACTTGGTGCTTATT+TGG - chr6_1:48468410-48468429 Msa0887250:intron 40.0%
!! GTTGTTTTCACGAACTATCC+TGG + chr6_1:48468534-48468553 None:intergenic 40.0%
GATTAATCAGTGCAACACCA+AGG + chr6_1:48468706-48468725 None:intergenic 40.0%
ACATCCAAACGTGAAGATGT+GGG - chr6_1:48468919-48468938 Msa0887250:intron 40.0%
TGCTGAATCCCTGAATAAAG+AGG - chr6_1:48469407-48469426 Msa0887250:intron 40.0%
CCTTGCTTTCCTCTTTATTC+AGG + chr6_1:48469419-48469438 None:intergenic 40.0%
CCTGAATAAAGAGGAAAGCA+AGG - chr6_1:48469416-48469435 Msa0887250:intron 40.0%
GAAAGACGAAGAGAAATCTG+AGG - chr6_1:48469503-48469522 Msa0887250:intron 40.0%
GAAAACCGAGGAGAAAACTA+AGG - chr6_1:48469527-48469546 Msa0887250:intron 40.0%
GACACCAGAAAAAGAAAGCA+AGG - chr6_1:48469557-48469576 Msa0887250:intron 40.0%
! TCTCCCTTGCTTTCTTTTTC+TGG + chr6_1:48469564-48469583 None:intergenic 40.0%
CATAATCAAGCAGATGAACC+AGG + chr6_1:48469609-48469628 None:intergenic 40.0%
CAAGGCAATATGGCAAAGTT+TGG - chr6_1:48469647-48469666 Msa0887250:intron 40.0%
TATTGATAAGAGTGGCACGA+AGG + chr6_1:48469680-48469699 None:intergenic 40.0%
!!! AGCAAGGTTGGTTTTTGAGT+CGG - chr6_1:48469779-48469798 Msa0887250:intron 40.0%
CGGGTTTGAATCATTGAGAT+TGG - chr6_1:48469799-48469818 Msa0887250:intron 40.0%
! ATCATTGAGATTGGCGCTTT+TGG - chr6_1:48469808-48469827 Msa0887250:intron 40.0%
! TTGAACGAGTCATGTTGGTT+TGG - chr6_1:48469878-48469897 Msa0887250:intron 40.0%
!! AGTCATGTTGGTTTGGTGTA+GGG - chr6_1:48469885-48469904 Msa0887250:intron 40.0%
! GGTTTCTAGAGAGAGAGTGA+AGG + chr6_1:48466949-48466968 None:intergenic 45.0%
! GAGAGAGAGAGAGAGTATAC+AGG + chr6_1:48467141-48467160 None:intergenic 45.0%
AGGAATCAATGGAAGGAACG+AGG - chr6_1:48467708-48467727 Msa0887250:intron 45.0%
GGAATCAATGGAAGGAACGA+GGG - chr6_1:48467709-48467728 Msa0887250:intron 45.0%
GAATCAATGGAAGGAACGAG+GGG - chr6_1:48467710-48467729 Msa0887250:intron 45.0%
TGACACTGACACGTTAACAC+CGG - chr6_1:48467999-48468018 Msa0887250:intron 45.0%
GACATCCAAACGTGAAGATG+TGG - chr6_1:48468918-48468937 Msa0887250:intron 45.0%
AGGTGCACATAATTCGACCA+AGG + chr6_1:48469091-48469110 None:intergenic 45.0%
!! TTTCCCTGCTTATAATGGGC+AGG - chr6_1:48469126-48469145 Msa0887250:intron 45.0%
!! TTCCCTGCTTATAATGGGCA+GGG - chr6_1:48469127-48469146 Msa0887250:intron 45.0%
AACCCTGCCCATTATAAGCA+GGG + chr6_1:48469132-48469151 None:intergenic 45.0%
TAACCCTGCCCATTATAAGC+AGG + chr6_1:48469133-48469152 None:intergenic 45.0%
AAGTGCCACAGGATCATGTT+AGG + chr6_1:48469191-48469210 None:intergenic 45.0%
!! TGTTACGTTAGAAGTGCCAC+AGG + chr6_1:48469202-48469221 None:intergenic 45.0%
CATTGCTGCTGTCTTTCCAT+TGG - chr6_1:48469245-48469264 Msa0887250:intron 45.0%
GAAATCTGAGGAGAAAACCG+AGG - chr6_1:48469515-48469534 Msa0887250:intron 45.0%
GAAAAGAAAGTCGAAGAGCC+TGG - chr6_1:48469588-48469607 Msa0887250:intron 45.0%
GGCAATATGGCAAAGTTTGG+TGG - chr6_1:48469650-48469669 Msa0887250:intron 45.0%
! CTCTCATAGTCCTAGTCTTC+AGG - chr6_1:48469702-48469721 Msa0887250:intron 45.0%
!!! GCAAGGTTGGTTTTTGAGTC+GGG - chr6_1:48469780-48469799 Msa0887250:intron 45.0%
! AGATTGGCGCTTTTGGTCTA+TGG - chr6_1:48469815-48469834 Msa0887250:intron 45.0%
! GATTGGCGCTTTTGGTCTAT+GGG - chr6_1:48469816-48469835 Msa0887250:intron 45.0%
!! GAGTCATGTTGGTTTGGTGT+AGG - chr6_1:48469884-48469903 Msa0887250:intron 45.0%
!! ATGTTGGTTTGGTGTAGGGA+TGG - chr6_1:48469889-48469908 Msa0887250:intron 45.0%
!! TGTTGGTTTGGTGTAGGGAT+GGG - chr6_1:48469890-48469909 Msa0887250:intron 45.0%
!! TGAGGCGTCGTCATCAAAAT+CGG + chr6_1:48470068-48470087 None:intergenic 45.0%
!! AAGCACCGATCATCACGAAG+AGG - chr6_1:48467003-48467022 Msa0887250:three_prime_UTR 50.0%
CGCTCCGATCATTCAACTTC+AGG - chr6_1:48467069-48467088 Msa0887250:three_prime_UTR 50.0%
! GTCAGTGTCATTGTCGTGTC+AGG + chr6_1:48467989-48468008 None:intergenic 50.0%
GTCAGACGCTAACATGTGTC+AGG - chr6_1:48468079-48468098 Msa0887250:intron 50.0%
! ATGACTGTGCAAGAGCATGC+TGG - chr6_1:48468233-48468252 Msa0887250:intron 50.0%
! TGACTGTGCAAGAGCATGCT+GGG - chr6_1:48468234-48468253 Msa0887250:intron 50.0%
ATCTTGTGTTTGGCACGCGA+AGG - chr6_1:48468265-48468284 Msa0887250:intron 50.0%
CTCACCCACATCTTCACGTT+TGG + chr6_1:48468926-48468945 None:intergenic 50.0%
CTTAGATGCCACCTGTGTGT+GGG - chr6_1:48469000-48469019 Msa0887250:intron 50.0%
CTTAAGGAGATCAGCAGCAG+TGG + chr6_1:48469448-48469467 None:intergenic 50.0%
!! GTTGGTTTGGTGTAGGGATG+GGG - chr6_1:48469891-48469910 Msa0887250:intron 50.0%
GAAGAGGAAGATGTTCCCGC+CGG - chr6_1:48467019-48467038 Msa0887250:three_prime_UTR 55.0%
! CAGGAAGTCGCTGTTTCCAC+TGG - chr6_1:48467088-48467107 Msa0887250:three_prime_UTR 55.0%
CACGCGAAGGACTTTGCTGA+TGG - chr6_1:48468278-48468297 Msa0887250:intron 55.0%
ACCGAAGGCTGTTGTGCATG+CGG - chr6_1:48468977-48468996 Msa0887250:intron 55.0%
GCTTAGATGCCACCTGTGTG+TGG - chr6_1:48468999-48469018 Msa0887250:intron 55.0%
!! GTTTGGTGTAGGGATGGGGA+GGG - chr6_1:48469895-48469914 Msa0887250:intron 55.0%
GTGTCTTCTTCATCGCCGGC+GGG + chr6_1:48467037-48467056 None:intergenic 60.0%
GGTGTCTTCTTCATCGCCGG+CGG + chr6_1:48467038-48467057 None:intergenic 60.0%
GCCGGCGATGAAGAAGACAC+CGG - chr6_1:48467037-48467056 Msa0887250:three_prime_UTR 60.0%
GCCGGTGTCTTCTTCATCGC+CGG + chr6_1:48467041-48467060 None:intergenic 60.0%
GATCGGAGCGATTTGAGCGC+CGG + chr6_1:48467059-48467078 None:intergenic 60.0%
CAATGGAAGGAACGAGGGGC+AGG - chr6_1:48467714-48467733 Msa0887250:intron 60.0%
GCCGCATGCACAACAGCCTT+CGG + chr6_1:48468981-48469000 None:intergenic 60.0%
CCATTGTGCCCACACACAGG+TGG + chr6_1:48469011-48469030 None:intergenic 60.0%
CCACCTGTGTGTGGGCACAA+TGG - chr6_1:48469008-48469027 Msa0887250:intron 60.0%
!! GGTTTGGTGTAGGGATGGGG+AGG - chr6_1:48469894-48469913 Msa0887250:intron 60.0%
GCGCCATTGTGCCCACACAC+AGG + chr6_1:48469014-48469033 None:intergenic 65.0%
! AGGGATGGGGAGGGTGCAGT+CGG - chr6_1:48469904-48469923 Msa0887250:intron 65.0%
! GGGATGGGGAGGGTGCAGTC+GGG - chr6_1:48469905-48469924 Msa0887250:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 48466937 48470145 48466937 ID=Msa0887250;Name=Msa0887250
chr6_1 mRNA 48466937 48470145 48466937 ID=Msa0887250-mRNA-1;Parent=Msa0887250;Name=Msa0887250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|4|522|224
chr6_1 exon 48466937 48467709 48466937 ID=Msa0887250-mRNA-1:exon:10103;Parent=Msa0887250-mRNA-1
chr6_1 exon 48468735 48468860 48468735 ID=Msa0887250-mRNA-1:exon:10102;Parent=Msa0887250-mRNA-1
chr6_1 exon 48469254 48469405 48469254 ID=Msa0887250-mRNA-1:exon:10101;Parent=Msa0887250-mRNA-1
chr6_1 exon 48469942 48470145 48469942 ID=Msa0887250-mRNA-1:exon:10100;Parent=Msa0887250-mRNA-1
chr6_1 five_prime_UTR 48470088 48470145 48470088 ID=Msa0887250-mRNA-1:five_prime_utr;Parent=Msa0887250-mRNA-1
chr6_1 CDS 48469942 48470087 48469942 ID=Msa0887250-mRNA-1:cds;Parent=Msa0887250-mRNA-1
chr6_1 CDS 48469254 48469405 48469254 ID=Msa0887250-mRNA-1:cds;Parent=Msa0887250-mRNA-1
chr6_1 CDS 48468735 48468860 48468735 ID=Msa0887250-mRNA-1:cds;Parent=Msa0887250-mRNA-1
chr6_1 CDS 48467459 48467709 48467459 ID=Msa0887250-mRNA-1:cds;Parent=Msa0887250-mRNA-1
chr6_1 three_prime_UTR 48466937 48467458 48466937 ID=Msa0887250-mRNA-1:three_prime_utr;Parent=Msa0887250-mRNA-1
Gene Sequence

>Msa0887250

ATGTCTACAAGCACCGATCATCACGAAGAGGAAGATGTTCCCGCCGGCGATGAAGAAGACACCGGCGCTCAAATCGCTCCGATCATTCAACTTCAGGAAGTCGCTGTTTCCACTGGTGAAGAAGATGAAGAAGCTATTCTCGACCTAAAAGCGAAACTGTACCGATTTGACAAGGAAAGGAATCAATGGAAGGAACGAGGGGCAGGAACTGTGAAGTTTTTGAAGCATAAGGTTACCGGAAAAGTTAGGCTTGTTATGAGACAATCAAAGACTCTTAAGATCTGCGCCAATCATCTCATTTTGCCTAAAATGACTGTGCAAGAGCATGCTGGGAATGAGAAATCTTGTGTTTGGCACGCGAAGGACTTTGCTGATGGTGAATTGAAAGACGAGTTTTTCTGCATTCGATTTGCGTCAATTGAAAATTGCAGAAAGTTCACAGAGACATTTCAAGAAATTGCTGAATCCCTGAATAAAGAGGAAAGCAAGGATGCATCCACTGCTGCTGATCTCCTTAAGAATTTGAGCGTTGAAGGGAAAGCAGATGCAGAAAAGAAAGACGAAGAGAAATCTGAGGAGAAAACCGAGGAGAAAACTAAGGAGAAAGAGACACCAGAAAAAGAAAGCAAGGGAGATTCAGAAAAGAAAGTCGAAGAGCCTGGTTCATCTGCTTGA

Protein sequence

>Msa0887250

MSTSTDHHEEEDVPAGDEEDTGAQIAPIIQLQEVAVSTGEEDEEAILDLKAKLYRFDKERNQWKERGAGTVKFLKHKVTGKVRLVMRQSKTLKICANHLILPKMTVQEHAGNEKSCVWHAKDFADGELKDEFFCIRFASIENCRKFTETFQEIAESLNKEESKDASTAADLLKNLSVEGKADAEKKDEEKSEEKTEEKTKEKETPEKESKGDSEKKVEEPGSSA*