AlfalfaGEDB | Msa0470540

M. sativa cultivar zhongmu-4 / Msa0470540

KEGG: K11423
GO: GO:0000003 GO:0001763 GO:0002682 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006629 GO:0006720 GO:0006721 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010363 GO:0010452 GO:0010468 GO:0010604 GO:0010638 GO:0010941 GO:0016043 GO:0016108 GO:0016116 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034968 GO:0035670 GO:0036211 GO:0040029 GO:0042054 GO:0042800 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045088 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1905269 GO:1905393 GO:2000026 GO:2000241 GO:2000242 GO:2001252
PFAM: PF17907.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470540	XP_024634355.1	94.708	926	32	1	1	926	1276	2184	0.0	1839

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470540	sp\|Q2LAE1\|ASHH2_ARATH	43.233	798	311	18	1	773	977	1657	0.0	577

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470540	A0A072VB26	94.708	926	32	1	1	926	1275	2183	0.0	1839

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TFs/TRs:

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Gene ID	Type	Classification
Msa0470540	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0470540	0.813375	2.642580e-51	-8.615850e-47
Msa0095560	Msa0470540	0.822988	1.763798e-53	-8.615850e-47
Msa0126190	Msa0470540	0.861147	1.257999e-63	-8.615850e-47
Msa0148080	Msa0470540	0.806959	6.383992e-50	-8.615850e-47
Msa0178570	Msa0470540	0.805156	1.529404e-49	-8.615850e-47
Msa0188900	Msa0470540	0.809239	2.087717e-50	-8.615850e-47
Msa0204770	Msa0470540	0.814119	1.811804e-51	-8.615850e-47
Msa0218370	Msa0470540	0.817220	3.691891e-52	-8.615850e-47
Msa0260780	Msa0470540	0.821361	4.205872e-53	-8.615850e-47
Msa0264310	Msa0470540	0.807811	4.211991e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470540	MtrunA17_Chr3g0125251	94.708	926	32	1	1	926	1275	2183	0.0	1839
Msa0470540	MtrunA17_Chr1g0201621	39.912	228	117	4	2	227	35	244	1.33e-48	180
Msa0470540	MtrunA17_Chr1g0201311	39.474	228	118	4	2	227	35	244	4.08e-48	178
Msa0470540	MtrunA17_Chr2g0305371	41.237	194	92	5	15	208	301	472	8.45e-37	145
Msa0470540	MtrunA17_Chr6g0477001	38.756	209	108	4	1	209	64	252	2.69e-36	140
Msa0470540	MtrunA17_Chr5g0403241	32.632	190	95	4	33	207	1335	1506	1.21e-20	98.6
Msa0470540	MtrunA17_Chr4g0075321	31.915	188	95	4	33	205	892	1061	1.88e-19	94.4
Msa0470540	MtrunA17_Chr1g0149611	32.934	167	91	3	42	204	355	504	1.94e-18	89.7
Msa0470540	MtrunA17_Chr1g0149581	31.098	164	92	3	45	204	1516	1662	1.29e-17	88.6
Msa0470540	MtrunA17_Chr8g0373821	32.821	195	94	6	24	203	361	533	3.59e-17	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0470540	AT1G77300.1	47.494	798	323	17	1	773	977	1703	0.0	668
Msa0470540	AT1G77300.2	69.492	236	54	2	1	236	977	1194	1.01e-112	379
Msa0470540	AT1G76710.2	38.956	249	128	5	2	246	40	268	6.47e-51	187
Msa0470540	AT1G76710.1	38.956	249	128	5	2	246	40	268	6.47e-51	187
Msa0470540	AT1G76710.4	38.956	249	128	5	2	246	40	268	1.55e-50	186
Msa0470540	AT1G76710.3	38.956	249	128	5	2	246	40	268	2.35e-50	186
Msa0470540	AT4G30860.1	38.660	194	97	5	15	208	294	465	7.43e-32	131
Msa0470540	AT3G59960.3	37.799	209	110	4	1	209	63	251	1.95e-31	125
Msa0470540	AT3G59960.2	37.799	209	110	4	1	209	63	251	1.95e-31	125
Msa0470540	AT3G59960.4	37.799	209	110	4	1	209	63	251	1.95e-31	125

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Find 269 sgRNAs with CRISPR-Local

Find 635 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGGCTATATGGACA+GGG	0.689647	3_3:+72637258	Msa0470540:CDS
AAAACTTACTAGTGATTCGG+AGG	0.640131	3_3:+72638242	Msa0470540:CDS
AAAATGCAAGCCATTCTGGA+TGG	0.598409	3_3:+72637668	Msa0470540:CDS
AAACCTGCTGATTGGAGCAA+CGG	0.582643	3_3:-72630056	None:intergenic
AAACTTAATGAGTTGCTGGA+TGG	0.596646	3_3:+72635003	Msa0470540:CDS
AAATCGCCTTACAGCTGAGA+TGG	0.576893	3_3:+72634817	Msa0470540:CDS
AACAGCGGTCCTCCTTGTCG+TGG	0.600984	3_3:+72636588	Msa0470540:CDS
AACAGTGCACTAAACTCTGG+CGG	0.669394	3_3:+72637634	Msa0470540:CDS
AACGTAAGCGCAAAAGCCGA+TGG	0.499536	3_3:+72637497	Msa0470540:CDS
AACTAGAGGGCCATCCAGAA+TGG	0.545297	3_3:-72637678	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTTATGTATACAGTCATG+AGG	+	chr3_3:72629830-72629849	Msa0470540:five_prime_UTR	30.0%
TAGTTTATAAACCTGCTGAT+TGG	-	chr3_3:72630067-72630086	None:intergenic	30.0%
TAAATCACAATCATGCTCTT+TGG	-	chr3_3:72630128-72630147	None:intergenic	30.0%
ACATTTAAACCACTTCAATC+TGG	-	chr3_3:72630185-72630204	None:intergenic	30.0%
AGATTGAAGTGGTTTAAATG+TGG	+	chr3_3:72630184-72630203	Msa0470540:CDS	30.0%
GATTGAAGTGGTTTAAATGT+GGG	+	chr3_3:72630185-72630204	Msa0470540:CDS	30.0%
TGGTTTAAATGTGGGAAAAA+AGG	+	chr3_3:72630193-72630212	Msa0470540:CDS	30.0%
AAATGTGGGAAAAAAGGTTA+TGG	+	chr3_3:72630199-72630218	Msa0470540:CDS	30.0%
TATTATTGAATACGTTGGAG+AGG	+	chr3_3:72630258-72630277	Msa0470540:CDS	30.0%
AATGACCAAACCACAAATAT+GGG	-	chr3_3:72630398-72630417	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	72629734	72638798	72629734	ID=Msa0470540;Name=Msa0470540
chr3_3	mRNA	72629734	72638798	72629734	ID=Msa0470540-mRNA-1;Parent=Msa0470540;Name=Msa0470540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=212\|0.76\|0.78\|0.92\|1\|1\|14\|499\|926
chr3_3	exon	72629734	72630074	72629734	ID=Msa0470540-mRNA-1:exon:18179;Parent=Msa0470540-mRNA-1
chr3_3	exon	72630163	72630279	72630163	ID=Msa0470540-mRNA-1:exon:18180;Parent=Msa0470540-mRNA-1
chr3_3	exon	72631215	72631307	72631215	ID=Msa0470540-mRNA-1:exon:18181;Parent=Msa0470540-mRNA-1
chr3_3	exon	72632826	72632903	72632826	ID=Msa0470540-mRNA-1:exon:18182;Parent=Msa0470540-mRNA-1
chr3_3	exon	72633234	72633290	72633234	ID=Msa0470540-mRNA-1:exon:18183;Parent=Msa0470540-mRNA-1
chr3_3	exon	72633948	72633998	72633948	ID=Msa0470540-mRNA-1:exon:18184;Parent=Msa0470540-mRNA-1
chr3_3	exon	72634182	72634917	72634182	ID=Msa0470540-mRNA-1:exon:18185;Parent=Msa0470540-mRNA-1
chr3_3	exon	72634995	72635050	72634995	ID=Msa0470540-mRNA-1:exon:18186;Parent=Msa0470540-mRNA-1
chr3_3	exon	72635391	72635470	72635391	ID=Msa0470540-mRNA-1:exon:18187;Parent=Msa0470540-mRNA-1
chr3_3	exon	72635617	72635699	72635617	ID=Msa0470540-mRNA-1:exon:18188;Parent=Msa0470540-mRNA-1
chr3_3	exon	72635814	72635893	72635814	ID=Msa0470540-mRNA-1:exon:18189;Parent=Msa0470540-mRNA-1
chr3_3	exon	72636540	72636619	72636540	ID=Msa0470540-mRNA-1:exon:18190;Parent=Msa0470540-mRNA-1
chr3_3	exon	72636956	72637001	72636956	ID=Msa0470540-mRNA-1:exon:18191;Parent=Msa0470540-mRNA-1
chr3_3	exon	72637205	72638798	72637205	ID=Msa0470540-mRNA-1:exon:18192;Parent=Msa0470540-mRNA-1
chr3_3	five_prime_UTR	72629734	72629945	72629734	ID=Msa0470540-mRNA-1:five_prime_utr;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72629946	72630074	72629946	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72630163	72630279	72630163	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72631215	72631307	72631215	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72632826	72632903	72632826	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72633234	72633290	72633234	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72633948	72633998	72633948	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72634182	72634917	72634182	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72634995	72635050	72634995	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72635391	72635470	72635391	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72635617	72635699	72635617	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72635814	72635893	72635814	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72636540	72636619	72636540	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72636956	72637001	72636956	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	CDS	72637205	72638299	72637205	ID=Msa0470540-mRNA-1:cds;Parent=Msa0470540-mRNA-1
chr3_3	three_prime_UTR	72638300	72638798	72638300	ID=Msa0470540-mRNA-1:three_prime_utr;Parent=Msa0470540-mRNA-1

Gene Sequence

>Msa0470540

ATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTAGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCATGTGGGGACCGTTGCTCCAATCAGCAGTTCCAAAAACGCGAGTATTCCAGATTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGAGCGTGTAGCTAAAGGCCACTTTATTATTGAATACGTTGGAGAGGTCCTTGACATGCCTGCATACGAGGCACGTCAAAGAGAGTATGCTGTGAAGGGCCATAGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTTATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTAAATGGGGAAATCTGTATTGGGCTGTTCGCATTGCGGAATATCAAGCAGAATATGATATATGATATGATGTCTTTAAACTTTGAAGAGATTAGTGGTGAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGCGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGCGGTGGTGATCCACTTAATGCTGAGGTTATAGTTCATGGTGATTCAGATGATGAATATCCAGAACCCATGATGCTTACGGAAGATGGTGTAGTTAAGGACAGCACACCTATGCCCAAGTACTGTGATAATGTTGATACAGAGTCTTCTATTCATTTATTGACGGACAGGGATGCATTGGACAAGTCTACAACTGCTATAGATGAAGATGGTTCTCCTGGGAAACGTAGTTCTCCAGGGAAAGATAGTTCTATGAACTCTGCATCTGCCGTTTCCCTTTTGCACTCAGCTGAAGTAGAAGACTCAAAAAGCAATTTACCATCTTCTGATCAAATAGAAGAAATTTCTCAACAAATGGAGGATACGACAAGCAAACCCATGCCTGCTGCCAGCATGGTCCTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGATGGGAATGGTTTTTCACAATCACATCTGCATGTGAAGACTCCTCAACCCAACACTTCTGTTAAAAAGTCTAAAGGCAGTGCTAATGCTGCAAATCGCCTTACAGCTGAGATGGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTGGTCGAAGGTGCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGAAGCAACCGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGACGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGCAGGCAAGGTTTTGACACCTGAACATATCAACAGCGGTCCTCCTTGTCGTGGAATGGAGAGTTTTAGGCGTTCAATGCTGTCTTTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGAAAACAAGGCAGAAAACGTGGCTATATGGACAGGGATGATAATATGTTGGAATCTCACAGAAATTTCAACTGTAACAGAAATTCAGTATCACACAATCATAGGCACGAGCAGGGATTAAGACCTAAGGAAGAAGAAATTGATTGTGGTCAGCGGTCAATGCTCGTGACAACTTCAACTTCAGTAGATGCTGGCTCCCAGGAGGGCTGTTCTACACCGTCTTTGGATGGAGTTGAGATCAAAGAGGCAAAAAAACGTAAGCGCAAAAGCCGATGGGATCAACCTGCAGAAACAAATTCATATTCTGCTTCTGTTATTGGCTCTACCAATGAAAGCCAGAAGATTAGTGAAGAAATTCCACCTGGGTTTTCATGTCCAATACGTTCATTAAACAGTGCACTAAACTCTGGCGGTCCAGCTTTGCAAAATGCAAGCCATTCTGGATGGCCCTCTAGTTTAGTCACTACTGGTCAGCCAAAAGAGAAATTCAATTCTCGTTTGCCTGTCTCATATGGAATACCATGGTCTGTTGCTCAGCAATACGGAACTCCTCATGCAGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCTACCCATTTCCGCCACTACCCCCATATCCACGGGATATCAAAGACTGTCAACCTTCTAATACTAATAGTATGGAAATTGACCAGCCTGCTGAAGTTAAGCAAAGGGACGCCAATTGTCTAGTTAATTGCTGCTCTGAATCAGATCATATGACTCCCAGTCCCAGCACAACTGGTGCTAAGTCTGAAGACACAAATGTTGAATGCGAGGATGCTAAACACGACTCTAAGCGATTGAAGACCGACTCTAGTGATTTGGGAGAGAATCACTTTAGACAGCAGAAGTGGAACAATTCAAAAATACATCGAACATGGTTCAAGAGGAATGCAAGGAGATGTAATGGGAACAGCTCTAGTGGTGATATGTGCAGTATAGATGTAGGAGATGCATCAAAAAAATCAAAACTTACTAGTGATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA

Protein sequence

>Msa0470540

MVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKREYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYAVKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNIKQNMIYDMMSLNFEEISGEDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAEVIVHGDSDDEYPEPMMLTEDGVVKDSTPMPKYCDNVDTESSIHLLTDRDALDKSTTAIDEDGSPGKRSSPGKDSSMNSASAVSLLHSAEVEDSKSNLPSSDQIEEISQQMEDTTSKPMPAASMVLSNSTDSRESKSEMVEDGNGFSQSHLHVKTPQPNTSVKKSKGSANAANRLTAEMAANRLPVSSIKHKKVVEGASNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRSNREAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAAGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRKQGRKRGYMDRDDNMLESHRNFNCNRNSVSHNHRHEQGLRPKEEEIDCGQRSMLVTTSTSVDAGSQEGCSTPSLDGVEIKEAKKRKRKSRWDQPAETNSYSASVIGSTNESQKISEEIPPGFSCPIRSLNSALNSGGPALQNASHSGWPSSLVTTGQPKEKFNSRLPVSYGIPWSVAQQYGTPHAEITGCWVTAPGMPFYPFPPLPPYPRDIKDCQPSNTNSMEIDQPAEVKQRDANCLVNCCSESDHMTPSPSTTGAKSEDTNVECEDAKHDSKRLKTDSSDLGENHFRQQKWNNSKIHRTWFKRNARRCNGNSSSGDMCSIDVGDASKKSKLTSDSEDAICRDEKGGK*