AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0742750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742750 MtrunA17_Chr5g0444691 96.711 760 16 2 212 971 1 751 0.0 1459
Msa0742750 MtrunA17_Chr5g0444681 95.745 141 6 0 1 141 1 141 3.69e-91 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742750 AT5G55100.2 40.675 1008 392 28 1 971 1 839 5.85e-179 541
Msa0742750 AT5G55100.1 40.675 1008 392 28 1 971 1 839 8.09e-179 541
Msa0742750 AT5G55100.10 38.201 767 327 23 239 971 1 654 2.47e-108 350
Msa0742750 AT5G55100.3 38.201 767 327 23 239 971 1 654 2.47e-108 350
Msa0742750 AT5G55100.5 38.201 767 327 23 239 971 1 654 2.47e-108 350
Msa0742750 AT5G55100.6 38.201 767 327 23 239 971 1 654 2.47e-108 350
Msa0742750 AT5G55100.11 38.201 767 327 23 239 971 1 654 2.47e-108 350
Msa0742750 AT5G55100.7 38.201 767 327 23 239 971 1 654 2.69e-108 350
Msa0742750 AT5G55100.4 38.201 767 327 23 239 971 1 654 2.69e-108 350
Msa0742750 AT5G55100.8 38.201 767 327 23 239 971 1 654 2.69e-108 350
Msa0742750 AT5G55100.9 38.201 767 327 23 239 971 1 654 2.69e-108 350
Msa0742750 AT5G55100.12 38.201 767 327 23 239 971 1 654 2.69e-108 350

Find 220 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACATGGCTCTAATTT+TGG 0.118147 5_1:-62734913 None:intergenic
TTCCTCCTCTTCATGTTTAC+TGG 0.123621 5_1:-62734226 None:intergenic
CCACCGAGCTCTGGACTTTC+AGG 0.131202 5_1:+62734003 Msa0742750:CDS
CTATACCTCTTGTGAGAAAA+TGG 0.179390 5_1:+62731872 Msa0742750:CDS
AGATGACTATTGGCAATTTA+AGG 0.201652 5_1:+62733521 Msa0742750:CDS
TCATCTTGAATTTCTCTTTC+CGG 0.219255 5_1:-62733504 None:intergenic
ACAGGAGTTGCCCCAGATTC+AGG 0.224788 5_1:+62732630 Msa0742750:CDS
AGTTTGAGATTGGCTGTCTT+TGG 0.250807 5_1:-62733566 None:intergenic
TCTTTGCTTGGATCTGTCTA+TGG 0.271680 5_1:+62732360 Msa0742750:CDS
GATCCGCTGGAGTGTGCTTC+TGG 0.286817 5_1:-62733447 None:intergenic
GCACCATTAGACCCTGAATC+TGG 0.291563 5_1:-62732642 None:intergenic
TGAGTCTGTTCTTGCTGAAC+AGG 0.291601 5_1:+62732791 Msa0742750:CDS
CAAGGAGATAATCCAACATT+TGG 0.295832 5_1:+62732192 Msa0742750:CDS
AGAAATGCTTCCATCCTTCT+TGG 0.299556 5_1:-62732514 None:intergenic
GTTTGTTTAGATAATGATTC+AGG 0.315306 5_1:+62731445 Msa0742750:intron
AAATTTGTAAAAGCAAAATT+AGG 0.322634 5_1:+62734938 Msa0742750:exon
GACTGATTCCGCTTTATAAC+AGG 0.329088 5_1:-62732567 None:intergenic
CTATTCTTCAGGCAGCTACT+AGG 0.346882 5_1:+62733620 Msa0742750:CDS
AGAGGCAGAGTTGGAGGAGG+GGG 0.351243 5_1:+62734755 Msa0742750:CDS
TGAAGTAAGCTTTCTGGTAC+TGG 0.351760 5_1:-62731577 None:intergenic
CGATTAGAAGGCAGAAGAAA+TGG 0.352536 5_1:-62732834 None:intergenic
ATCTGATGTAGCTTCTCGTT+TGG 0.354189 5_1:-62732102 None:intergenic
TCAGAAACATTAGTTACTTC+AGG 0.356338 5_1:-62734879 None:intergenic
AGATTATGAAGTAAGCTTTC+TGG 0.357635 5_1:-62731583 None:intergenic
CACCGGAAGCTCTCGTTGAT+TGG 0.358199 5_1:+62728900 Msa0742750:CDS
CGTTTGAGGCGAGGAGGAAT+TGG 0.360029 5_1:-62728971 None:intergenic
TCCATCAGGCATAAATCATT+TGG 0.363850 5_1:+62735005 Msa0742750:three_prime_UTR
GGGGCCGTGCAGGTGGGATT+AGG 0.365876 5_1:+62731830 Msa0742750:CDS
CCCTCAGAATAATTTCTGAT+TGG 0.369800 5_1:-62732164 None:intergenic
CATTTGGCTTTATTATGTAT+TGG 0.374326 5_1:+62735021 Msa0742750:three_prime_UTR
TCTGCAATAGCCTTGGCAAC+TGG 0.375868 5_1:-62733811 None:intergenic
GCTGCTACTTCTGCATCATC+AGG 0.381682 5_1:+62732459 Msa0742750:CDS
GAGAAATTCAAGATGACTAT+TGG 0.382253 5_1:+62733511 Msa0742750:CDS
TTCCAATCAACGAGAGCTTC+CGG 0.387725 5_1:-62728902 None:intergenic
CAGCTACTAGGGGTATTAAA+AGG 0.387895 5_1:+62733632 Msa0742750:CDS
AGCAGCCGCAGCTATTCTTC+AGG 0.392106 5_1:+62733609 Msa0742750:CDS
AGAAAGCTTACTTCATAATC+TGG 0.393618 5_1:+62731585 Msa0742750:CDS
ATGCAGACAGGGACAGAAAC+AGG 0.401823 5_1:+62734364 Msa0742750:CDS
GTTTGAGATTGGCTGTCTTT+GGG 0.407276 5_1:-62733565 None:intergenic
TCTTTCCGGTCCATGTCATT+TGG 0.407743 5_1:-62733490 None:intergenic
TCTGTTGAGCCACCGAGCTC+TGG 0.414659 5_1:+62733994 Msa0742750:CDS
AGTGGTAATGGTCAAGGCCT+TGG 0.420560 5_1:+62733685 Msa0742750:CDS
CAAAATTAGAGCCATGTTGA+TGG 0.424496 5_1:+62734914 Msa0742750:CDS
GCCCCAGATTCAGGGTCTAA+TGG 0.425369 5_1:+62732639 Msa0742750:CDS
CCAACGACAAGTATTCTCAT+AGG 0.427441 5_1:+62734415 Msa0742750:CDS
TGTGGTTGTTCTTCATGAAT+CGG 0.429815 5_1:-62729073 None:intergenic
TCTGAGTTATCAGTATTGAA+TGG 0.431503 5_1:-62734081 None:intergenic
GATATTGAGAATTTGAGAAA+TGG 0.431563 5_1:-62728744 None:intergenic
CTTTCTGGTACTGGAAAGTT+GGG 0.433946 5_1:-62731568 None:intergenic
TGATTATTCAAGTATATATG+AGG 0.434149 5_1:+62731936 Msa0742750:CDS
GGAGGTGCATTGTCTTTGCT+TGG 0.435508 5_1:+62732348 Msa0742750:CDS
GATTGGCTGTCTTTGGGAGT+TGG 0.441345 5_1:-62733559 None:intergenic
AACCGATGCAGGCTCAACTT+TGG 0.442622 5_1:+62732293 Msa0742750:CDS
TAAGTATGATATCGATTAGA+AGG 0.444515 5_1:-62732846 None:intergenic
CATATTTCTACTGTTCCATC+AGG 0.444776 5_1:+62734991 Msa0742750:three_prime_UTR
AGAGAGGCAGAGTTGGAGGA+GGG 0.446411 5_1:+62734753 Msa0742750:CDS
GCTTTCTGGTACTGGAAAGT+TGG 0.447870 5_1:-62731569 None:intergenic
AAGGAGATAATCCAACATTT+GGG 0.448085 5_1:+62732193 Msa0742750:CDS
TGCTGAAAGAGAGGCAGAGT+TGG 0.452101 5_1:+62734746 Msa0742750:CDS
TACGGATGAAGATGATGATC+AGG 0.452690 5_1:-62732225 None:intergenic
TGCTAACTGTAGTTTGAGAT+TGG 0.455284 5_1:-62733576 None:intergenic
CACCATTAGACCCTGAATCT+GGG 0.456401 5_1:-62732641 None:intergenic
CTGAATTATTCAAGTCTACA+AGG 0.458387 5_1:+62734841 Msa0742750:CDS
GAAATCTTGCTGGTAAAGAA+AGG 0.460928 5_1:+62734043 Msa0742750:CDS
TTCATGAAAAGGGGCCGTGC+AGG 0.463062 5_1:+62731820 Msa0742750:CDS
AGTAAGGCGTCAAGTGGTAA+TGG 0.467860 5_1:+62733673 Msa0742750:CDS
GAGAGGCAGAGTTGGAGGAG+GGG 0.468764 5_1:+62734754 Msa0742750:CDS
TGATGTAGCTTCTCGTTTGG+AGG 0.470498 5_1:-62732099 None:intergenic
TCAGATGGAGGTTCAACAAC+AGG 0.471995 5_1:-62732711 None:intergenic
ATAATGAAAGGCGATCAAAA+AGG 0.473517 5_1:+62734187 Msa0742750:CDS
TATTCTTCAGGCAGCTACTA+GGG 0.474651 5_1:+62733621 Msa0742750:CDS
TCAATTTGCTGTGTTAGGTA+AGG 0.476326 5_1:-62735071 None:intergenic
GAAGATGATGATCAGGCATC+AGG 0.477942 5_1:-62732218 None:intergenic
CAGGAGTTGCCCCAGATTCA+GGG 0.478057 5_1:+62732631 Msa0742750:CDS
GCTGAGATTAGAAATCTTGC+TGG 0.478163 5_1:+62734033 Msa0742750:CDS
GCCAAATGATTTATGCCTGA+TGG 0.485061 5_1:-62735006 None:intergenic
TCAGGTGCAGTGAATTCATC+AGG 0.486609 5_1:+62731463 Msa0742750:CDS
TAGCGTGTCCACTGAGACAA+AGG 0.486789 5_1:+62731519 Msa0742750:CDS
GATGATGAGTGCGGCGTTTG+AGG 0.486900 5_1:-62728985 None:intergenic
TATGCTTTGTCTTTCTGCTC+CGG 0.487165 5_1:-62734710 None:intergenic
GTCGGGACAGGGATGCAGAC+AGG 0.487327 5_1:+62734352 Msa0742750:CDS
TATACCTCTTGTGAGAAAAT+GGG 0.488373 5_1:+62731873 Msa0742750:CDS
AGTCAGGAGCTGGATCAAAC+AGG 0.488581 5_1:+62732327 Msa0742750:CDS
ATAACTATCTTTAAGTCAGA+TGG 0.491088 5_1:-62732726 None:intergenic
GATTAGAAGGCAGAAGAAAT+GGG 0.493049 5_1:-62732833 None:intergenic
CATGTTTACTGGATCTTGAA+CGG 0.493859 5_1:-62734215 None:intergenic
TGCTTCTGTTCCAGTTGCCA+AGG 0.499747 5_1:+62733801 Msa0742750:CDS
TGAAAGAGAGGCAGAGTTGG+AGG 0.499968 5_1:+62734749 Msa0742750:CDS
AGTCACAAGTAAGCGAGGTT+GGG 0.499970 5_1:+62734796 Msa0742750:CDS
ACCTACCAAATGACATGGAC+CGG 0.500293 5_1:+62733485 Msa0742750:CDS
AAAGATGACAAAACCGATGC+AGG 0.500690 5_1:+62732282 Msa0742750:CDS
AAGAAAATAAAGAAGATACA+AGG 0.502836 5_1:+62734277 Msa0742750:CDS
GGCTCAACAGATAAAGCTCT+TGG 0.504528 5_1:-62733982 None:intergenic
GCAATGTTTGTCAGCAAACA+TGG 0.506547 5_1:+62732138 Msa0742750:CDS
AAGAGAGGCAGAGTTGGAGG+AGG 0.507274 5_1:+62734752 Msa0742750:CDS
TGACGGAAAACTCCGAGAGC+TGG 0.507276 5_1:-62733728 None:intergenic
ACAAGTAAGCGAGGTTGGGC+GGG 0.509025 5_1:+62734800 Msa0742750:CDS
GTGAGTTCACGAACGCCGCC+AGG 0.509562 5_1:-62728880 None:intergenic
CTTCACACAGAAGTCGGGAC+AGG 0.510210 5_1:+62734340 Msa0742750:CDS
TCAACAAGAAACCTAAAATA+CGG 0.511809 5_1:-62732243 None:intergenic
ATTCGATTCTAGAACTTCCA+TGG 0.513541 5_1:+62728811 Msa0742750:exon
AGAATACTTGTCGTTGGAGG+AGG 0.513912 5_1:-62734409 None:intergenic
ATGAAAAGGGGCCGTGCAGG+TGG 0.519467 5_1:+62731823 Msa0742750:CDS
AGTTCTTCAAACTGCTGAAG+AGG 0.519694 5_1:+62732878 Msa0742750:CDS
TCGATCTTCACACAGAAGTC+GGG 0.520051 5_1:+62734335 Msa0742750:CDS
ACAGTCTAAGTTACAAGGCA+AGG 0.520076 5_1:+62733420 Msa0742750:intron
GGCTATTGCAGCAGCAGGTG+AGG 0.520962 5_1:+62733840 Msa0742750:CDS
AAATCTTGCTGGTAAAGAAA+GGG 0.523325 5_1:+62734044 Msa0742750:CDS
CGAGATAACGTTGATGATCA+AGG 0.524860 5_1:-62729033 None:intergenic
ATCTTCAGATGCAGCCAAGA+AGG 0.525024 5_1:+62732500 Msa0742750:CDS
AGAGGAGGAAGAAGAGGACG+AGG 0.526595 5_1:+62734239 Msa0742750:CDS
GTCCAAAGTTGAGCCTGCAT+CGG 0.526767 5_1:-62732295 None:intergenic
TTTGGACAAGAATAGAAGTC+AGG 0.527933 5_1:+62732311 Msa0742750:CDS
GCTGAACAGGATCGTGCTCA+TGG 0.531525 5_1:+62732804 Msa0742750:CDS
GTGGGAATTTGTCCAGCTCT+CGG 0.534175 5_1:+62733716 Msa0742750:CDS
TGTTTACAGTCTAAGTTACA+AGG 0.534524 5_1:+62733415 Msa0742750:intron
AAGTCACAAGTAAGCGAGGT+TGG 0.536520 5_1:+62734795 Msa0742750:CDS
CAAGAATAGAAGTCAGGAGC+TGG 0.537742 5_1:+62732317 Msa0742750:CDS
TACGCGAATGTCTATGCTCA+TGG 0.538001 5_1:-62734569 None:intergenic
GGCATCAGGAACCCAAATGT+TGG 0.539081 5_1:-62732204 None:intergenic
TCCGGTCCATGTCATTTGGT+AGG 0.541588 5_1:-62733486 None:intergenic
ATGAGAATACTTGTCGTTGG+AGG 0.542787 5_1:-62734412 None:intergenic
CAAGGCCTTGGAAGTGATGG+TGG 0.543308 5_1:+62733697 Msa0742750:CDS
AACAGGATCGTGCTCATGGA+AGG 0.546005 5_1:+62732808 Msa0742750:CDS
CACAAGTAAGCGAGGTTGGG+CGG 0.550850 5_1:+62734799 Msa0742750:CDS
AAAGTGGCTATTGCAGCAGC+AGG 0.551862 5_1:+62733835 Msa0742750:CDS
GAACTCATAGACGGATCCGC+TGG 0.552448 5_1:-62733460 None:intergenic
TCATGAATCGGAGAAGAAGA+AGG 0.554871 5_1:-62729061 None:intergenic
ATTAGGAGGTTACCTTCTTG+TGG 0.557219 5_1:-62729091 None:intergenic
GACTCAAGGTAGCCATTCAC+AGG 0.557545 5_1:+62731778 Msa0742750:intron
ATGATCAAGGTCAGCTTCAA+CGG 0.557580 5_1:-62729020 None:intergenic
GATGTTCGTCATCTTCTCTC+CGG 0.559574 5_1:+62728947 Msa0742750:CDS
GAAAGACAAAGCATAAGAGC+AGG 0.559960 5_1:+62734718 Msa0742750:CDS
ATCCAGTAAACATGAAGAGG+AGG 0.560824 5_1:+62734224 Msa0742750:CDS
TCAGATGCAGCCAAGAAGGA+TGG 0.564145 5_1:+62732504 Msa0742750:CDS
GACTATTGGCAATTTAAGGA+AGG 0.564157 5_1:+62733525 Msa0742750:CDS
CAACGACAAGTATTCTCATA+GGG 0.564384 5_1:+62734416 Msa0742750:CDS
CTTCTCGACGTCATCGTGGA+GGG 0.566142 5_1:+62734532 Msa0742750:CDS
AATTCCCACCATCACTTCCA+AGG 0.566204 5_1:-62733702 None:intergenic
AGTATTCTCATAGGGAGAGT+AGG 0.570248 5_1:+62734424 Msa0742750:CDS
ACATGAAGAGGAGGAAGAAG+AGG 0.571410 5_1:+62734233 Msa0742750:CDS
ATCACTGTCCTTTGTCTCAG+TGG 0.571841 5_1:-62731527 None:intergenic
CCTATGAGAATACTTGTCGT+TGG 0.572072 5_1:-62734415 None:intergenic
CAGTCTAAGTTACAAGGCAA+GGG 0.572361 5_1:+62733421 Msa0742750:intron
CAGGTCTCATGCTGAAAGAG+AGG 0.572770 5_1:+62734737 Msa0742750:CDS
GAGGCGAGGAGGAATTGGAC+CGG 0.573199 5_1:-62728966 None:intergenic
CTGCTACTTCTGCATCATCA+GGG 0.573669 5_1:+62732460 Msa0742750:CDS
AGTTCAATCTTAGATGTACT+AGG 0.574073 5_1:-62732687 None:intergenic
ATTGGCAATTTAAGGAAGGA+TGG 0.577793 5_1:+62733529 Msa0742750:CDS
CTATGGAAATGAAGAGGATG+AGG 0.578886 5_1:+62732377 Msa0742750:CDS
GCCAATCAGAAATTATTCTG+AGG 0.579591 5_1:+62732163 Msa0742750:CDS
CCGTGCAGGTGGGATTAGGA+TGG 0.580366 5_1:+62731834 Msa0742750:CDS
CTTTGAGAGAAACGCACATG+TGG 0.580563 5_1:+62732425 Msa0742750:CDS
AAGATCCAGTAAACATGAAG+AGG 0.583036 5_1:+62734221 Msa0742750:CDS
GCATGACAGCTCCTCTGAGG+AGG 0.584258 5_1:+62734446 Msa0742750:CDS
CATGACAGCTCCTCTGAGGA+GGG 0.585607 5_1:+62734447 Msa0742750:CDS
GTCGATCTTCACACAGAAGT+CGG 0.586547 5_1:+62734334 Msa0742750:CDS
CCAATCAGAAATTATTCTGA+GGG 0.588348 5_1:+62732164 Msa0742750:CDS
GGCGGCGTTCGTGAACTCAC+CGG 0.589308 5_1:+62728883 Msa0742750:CDS
TTTAGTCATATGTGCTTCAG+AGG 0.590900 5_1:-62733869 None:intergenic
TTAAGACAGCAACTTCAGCT+AGG 0.592901 5_1:+62732601 Msa0742750:CDS
GCCAACGACTTCGAGATCCA+TGG 0.595544 5_1:-62728828 None:intergenic
CATGAAGAACAACCACAAGA+AGG 0.597495 5_1:+62729079 Msa0742750:CDS
GCGTCAAGTGGTAATGGTCA+AGG 0.602597 5_1:+62733679 Msa0742750:CDS
TCTTCTCGACGTCATCGTGG+AGG 0.603922 5_1:+62734531 Msa0742750:CDS
TATTGCAGCAGCAGGTGAGG+CGG 0.603948 5_1:+62733843 Msa0742750:CDS
TTTCCGTCATCTCAACTGCA+GGG 0.604555 5_1:+62733742 Msa0742750:CDS
AGACCCTGCAGTTGAGATGA+CGG 0.604995 5_1:-62733745 None:intergenic
GGAAATGAAGAGGATGAGGA+TGG 0.606153 5_1:+62732381 Msa0742750:CDS
AAGGACAGTGATACTGACTC+TGG 0.606944 5_1:+62731538 Msa0742750:CDS
ACCATTAGACCCTGAATCTG+GGG 0.607510 5_1:-62732640 None:intergenic
CTGCCAGAAGCACACTCCAG+CGG 0.608202 5_1:+62733444 Msa0742750:CDS
ATGTCTATGCTCATCATCAG+AGG 0.608642 5_1:-62734604 None:intergenic
AGAAAATAAAGAAGATACAA+GGG 0.609415 5_1:+62734278 Msa0742750:CDS
CGTCGAAAAGCATCGCGTGA+CGG 0.612256 5_1:-62728850 None:intergenic
TTCTGACCTACCAAATGACA+TGG 0.612916 5_1:+62733480 Msa0742750:CDS
TTACTGTTGATAATAATGAA+AGG 0.613626 5_1:+62734175 Msa0742750:CDS
GAACCTGAAAGTCCAGAGCT+CGG 0.616412 5_1:-62734006 None:intergenic
TTCACACAGAAGTCGGGACA+GGG 0.618957 5_1:+62734341 Msa0742750:CDS
AGATAAAAGTCACAAGTCTG+AGG 0.619109 5_1:+62734101 Msa0742750:CDS
TCGGGACAGGGATGCAGACA+GGG 0.619397 5_1:+62734353 Msa0742750:CDS
GGTCAAGGCCTTGGAAGTGA+TGG 0.619624 5_1:+62733694 Msa0742750:CDS
GTTACTTCAGGTGACTGAGA+GGG 0.621004 5_1:-62734867 None:intergenic
GGTTGGGCGGGCTAGCAGAG+AGG 0.621241 5_1:+62734812 Msa0742750:CDS
ACTATCTTTAAGTCAGATGG+AGG 0.622930 5_1:-62732723 None:intergenic
TGAAAAGGGGCCGTGCAGGT+GGG 0.623200 5_1:+62731824 Msa0742750:CDS
CGCTCTTCTCGACGTCATCG+TGG 0.626116 5_1:+62734528 Msa0742750:CDS
TGAGTGCGGCGTTTGAGGCG+AGG 0.628823 5_1:-62728980 None:intergenic
CACGATGACGTCGAGAAGAG+CGG 0.629753 5_1:-62734527 None:intergenic
ATTATTCTGAGGGTGAAACA+AGG 0.639145 5_1:+62732174 Msa0742750:CDS
ATTCTTCAGGCAGCTACTAG+GGG 0.639195 5_1:+62733622 Msa0742750:CDS
TTTCGACGACGACGGCCTGG+CGG 0.640701 5_1:+62728865 Msa0742750:CDS
CTGATGATGAGCATAGTCAC+CGG 0.643482 5_1:+62734691 Msa0742750:CDS
TGCTACTTCTGCATCATCAG+GGG 0.643605 5_1:+62732461 Msa0742750:CDS
CTTGCTGGTAAAGAAAGGGA+AGG 0.647067 5_1:+62734048 Msa0742750:CDS
AACTACAGTTAGCATTCATG+CGG 0.648226 5_1:+62733585 Msa0742750:CDS
TAGGCATGACAGCTCCTCTG+AGG 0.652290 5_1:+62734443 Msa0742750:CDS
ACATCGCAATCTGAATGCAG+AGG 0.653626 5_1:+62733774 Msa0742750:CDS
AAGGCCTTGGAAGTGATGGT+GGG 0.655180 5_1:+62733698 Msa0742750:CDS
GGTAGGTCAGAACTCATAGA+CGG 0.655742 5_1:-62733469 None:intergenic
AGCTGCCTGAAGAATAGCTG+CGG 0.660615 5_1:-62733614 None:intergenic
TCCATGGATCTCGAAGTCGT+TGG 0.661310 5_1:+62728827 Msa0742750:exon
AGTTACTTCAGGTGACTGAG+AGG 0.662084 5_1:-62734868 None:intergenic
ATCTGTCTATGGAAATGAAG+AGG 0.664551 5_1:+62732371 Msa0742750:CDS
TTTGAGAGAAACGCACATGT+GGG 0.669825 5_1:+62732426 Msa0742750:CDS
TGAATTATTCAAGTCTACAA+GGG 0.670470 5_1:+62734842 Msa0742750:CDS
GTGCGGCGTTTGAGGCGAGG+AGG 0.676156 5_1:-62728977 None:intergenic
CCATCCTAATCCCACCTGCA+CGG 0.677456 5_1:-62731834 None:intergenic
GCTTCAACGGTAGATTGCAG+CGG 0.682299 5_1:-62729007 None:intergenic
TCGATGTTCACCCTCCTCAG+AGG 0.684753 5_1:-62734457 None:intergenic
AGTAGAAATATGATCTAACG+AGG 0.686643 5_1:-62734980 None:intergenic
CAGGAGCTGGATCAAACAGG+AGG 0.687441 5_1:+62732330 Msa0742750:CDS
AGACAAGTCACAAGTAAGCG+AGG 0.688184 5_1:+62734791 Msa0742750:CDS
TGTTAGGTAAGGTTAAACAA+AGG 0.692111 5_1:-62735060 None:intergenic
TCTGCATTCAGATTGCGATG+TGG 0.712740 5_1:-62733772 None:intergenic
CCTGAAAGTCCAGAGCTCGG+TGG 0.714414 5_1:-62734003 None:intergenic
CAGACAGGGACAGAAACAGG+CGG 0.718480 5_1:+62734367 Msa0742750:CDS
GTAGAAATATGATCTAACGA+GGG 0.718751 5_1:-62734979 None:intergenic
AGGGTGAACATCGACACTTG+AGG 0.734085 5_1:+62734466 Msa0742750:CDS
ATTGCAGCGGATGATGAGTG+CGG 0.738074 5_1:-62728994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAATTAAAAATTTC+TGG + chr5_1:62729948-62729967 Msa0742750:intron 10.0%
!! TAAATTTAATTGACATATAT+GGG - chr5_1:62730227-62730246 None:intergenic 10.0%
!!! AATAAACTTTATCAAAATTT+TGG - chr5_1:62730444-62730463 None:intergenic 10.0%
!! TTACTAAAAATTTCTAAATT+AGG - chr5_1:62733658-62733677 None:intergenic 10.0%
!!! TAATTTAGAAATTTTTAGTA+AGG + chr5_1:62733657-62733676 Msa0742750:CDS 10.0%
!!! TCAATTCTAACAAAATTTTA+CGG - chr5_1:62729290-62729309 None:intergenic 15.0%
!!! TAAAATTTTGTTAGAATTGA+AGG + chr5_1:62729290-62729309 Msa0742750:intron 15.0%
!! CTAAATTTAATTGACATATA+TGG - chr5_1:62730228-62730247 None:intergenic 15.0%
!!! TGTCAATTAAATTTAGATTT+TGG + chr5_1:62730232-62730251 Msa0742750:intron 15.0%
!!! TTTTGATAAAGTTTATTGAA+TGG + chr5_1:62730447-62730466 Msa0742750:intron 15.0%
!!! GATTTTTTTTTTTCTTTTCA+CGG + chr5_1:62731168-62731187 Msa0742750:intron 15.0%
!! AAATTTGTAAAAGCAAAATT+AGG + chr5_1:62734938-62734957 Msa0742750:exon 15.0%
!! TGTAGATAGTCTAATTAATA+AGG + chr5_1:62729595-62729614 Msa0742750:intron 20.0%
!! GTAGATAGTCTAATTAATAA+GGG + chr5_1:62729596-62729615 Msa0742750:intron 20.0%
!!! GGTTAAATTTTAGATTTCAT+TGG + chr5_1:62729746-62729765 Msa0742750:intron 20.0%
!! AAAATGCAAATAAATATGAG+TGG + chr5_1:62729813-62729832 Msa0742750:intron 20.0%
!! AAATAAATATGAGTGGTAAT+GGG + chr5_1:62729820-62729839 Msa0742750:intron 20.0%
!!! AAAAGTATAAAAATCATGTG+TGG + chr5_1:62729910-62729929 Msa0742750:intron 20.0%
!!! TTTTTAATTTTTTTGTTCCC+AGG - chr5_1:62729944-62729963 None:intergenic 20.0%
!! AAGGTTTATAATGTTATTCT+CGG - chr5_1:62730033-62730052 None:intergenic 20.0%
!!! AATTTTGGTTATTTTGAGTT+TGG - chr5_1:62730429-62730448 None:intergenic 20.0%
!! CCAAATAAACTAAAACAAAA+TGG - chr5_1:62731341-62731360 None:intergenic 20.0%
!!! CCATTTTGTTTTAGTTTATT+TGG + chr5_1:62731338-62731357 Msa0742750:intron 20.0%
!! AATCATTATCTAAACAAACA+CGG - chr5_1:62731444-62731463 None:intergenic 20.0%
!! TGATTATTCAAGTATATATG+AGG + chr5_1:62731936-62731955 Msa0742750:CDS 20.0%
!!! CATAACACTAATTTTAAAGA+GGG - chr5_1:62732019-62732038 None:intergenic 20.0%
!! GAATAACCAACATAATAAAA+GGG - chr5_1:62733053-62733072 None:intergenic 20.0%
!! AGAATAACCAACATAATAAA+AGG - chr5_1:62733054-62733073 None:intergenic 20.0%
!! ATTATGTGTTAATTAATCTG+TGG + chr5_1:62733092-62733111 Msa0742750:intron 20.0%
!! ACAGTAAATAAAATATTGTC+TGG + chr5_1:62733160-62733179 Msa0742750:intron 20.0%
!! ATGAATATTCAAAGCAATAT+TGG + chr5_1:62733216-62733235 Msa0742750:intron 20.0%
!! GTGTAATTTGATTAATTTCA+AGG + chr5_1:62733354-62733373 Msa0742750:intron 20.0%
!!! TTACTGTTGATAATAATGAA+AGG + chr5_1:62734175-62734194 Msa0742750:CDS 20.0%
!! AAGAAAATAAAGAAGATACA+AGG + chr5_1:62734277-62734296 Msa0742750:CDS 20.0%
!! AGAAAATAAAGAAGATACAA+GGG + chr5_1:62734278-62734297 Msa0742750:CDS 20.0%
! GATATTGAGAATTTGAGAAA+TGG - chr5_1:62728747-62728766 None:intergenic 25.0%
! ACTAGAAGAATGAATGAATT+AGG - chr5_1:62729111-62729130 None:intergenic 25.0%
!! CTATATCGTTTATTCCATTT+TGG + chr5_1:62729149-62729168 Msa0742750:intron 25.0%
!!! GTTTTAAACTGAGATTAGAT+AGG + chr5_1:62729211-62729230 Msa0742750:intron 25.0%
!!! TATTGTTTTAAGTTCATTCC+AGG + chr5_1:62729256-62729275 Msa0742750:intron 25.0%
! GTTAGAATTGAAGGTTAATT+AGG + chr5_1:62729299-62729318 Msa0742750:intron 25.0%
! TATCTACATTTAATCCACTA+AGG - chr5_1:62729583-62729602 None:intergenic 25.0%
! CAAATAAATATGAGTGGTAA+TGG + chr5_1:62729819-62729838 Msa0742750:intron 25.0%
!!! TAAGTTGAGTTTTATTCTCA+TGG + chr5_1:62729852-62729871 Msa0742750:intron 25.0%
!! TTTTTATTCCTACGCTAATA+GGG - chr5_1:62729894-62729913 None:intergenic 25.0%
! TTCAAAACTTGAAACAAACA+TGG + chr5_1:62729980-62729999 Msa0742750:intron 25.0%
! TCAAAACTTGAAACAAACAT+GGG + chr5_1:62729981-62730000 Msa0742750:intron 25.0%
! AGGTTTATAATGTTATTCTC+GGG - chr5_1:62730032-62730051 None:intergenic 25.0%
!! TGTTTTCAAAACAAACAAGT+AGG + chr5_1:62730350-62730369 Msa0742750:intron 25.0%
! TAAATTATTCAACACACACA+GGG - chr5_1:62730587-62730606 None:intergenic 25.0%
! TGTGTGTTGAATAATTTAGT+TGG + chr5_1:62730589-62730608 Msa0742750:intron 25.0%
! GTGTGTTGAATAATTTAGTT+GGG + chr5_1:62730590-62730609 Msa0742750:intron 25.0%
!! TGAATAATTTAGTTGGGTTT+TGG + chr5_1:62730596-62730615 Msa0742750:intron 25.0%
! GGACTAATTGATATATCTTT+CGG + chr5_1:62731116-62731135 Msa0742750:intron 25.0%
!!! TTTTTTTTTTCTTTTCACGG+TGG + chr5_1:62731171-62731190 Msa0742750:intron 25.0%
! AAAAAACTAAACACTGTCTT+GGG - chr5_1:62731215-62731234 None:intergenic 25.0%
! AAAAAAACTAAACACTGTCT+TGG - chr5_1:62731216-62731235 None:intergenic 25.0%
! GTTTGTTTAGATAATGATTC+AGG + chr5_1:62731445-62731464 Msa0742750:intron 25.0%
! AAACATGAAAATCACATGAT+CGG - chr5_1:62731638-62731657 None:intergenic 25.0%
! CATGAAATCAAAAGGAAAAA+AGG - chr5_1:62731806-62731825 None:intergenic 25.0%
!!! TTCCTTTTGATTTCATGAAA+AGG + chr5_1:62731809-62731828 Msa0742750:CDS 25.0%
!!! TCCTTTTGATTTCATGAAAA+GGG + chr5_1:62731810-62731829 Msa0742750:CDS 25.0%
!!! GCATAACACTAATTTTAAAG+AGG - chr5_1:62732020-62732039 None:intergenic 25.0%
! TCAACAAGAAACCTAAAATA+CGG - chr5_1:62732246-62732265 None:intergenic 25.0%
!!! CTTTTTCTTTCAAAGGTATT+TGG - chr5_1:62732545-62732564 None:intergenic 25.0%
! AAAAAGTTCCTGTTATAAAG+CGG + chr5_1:62732559-62732578 Msa0742750:CDS 25.0%
! GTTGAGTTCATCTTAAAAAA+TGG + chr5_1:62732759-62732778 Msa0742750:CDS 25.0%
! AGTTCATCTTAAAAAATGGA+AGG + chr5_1:62732763-62732782 Msa0742750:CDS 25.0%
!! TAAGTATGATATCGATTAGA+AGG - chr5_1:62732849-62732868 None:intergenic 25.0%
! TGAATTATTCAAGTCTACAA+GGG + chr5_1:62734842-62734861 Msa0742750:CDS 25.0%
!! TTACAAATTTTCCATCAACA+TGG - chr5_1:62734928-62734947 None:intergenic 25.0%
!!! CATTTGGCTTTATTATGTAT+TGG + chr5_1:62735021-62735040 Msa0742750:three_prime_UTR 25.0%
AGAAGAATGAATGAATTAGG+AGG - chr5_1:62729108-62729127 None:intergenic 30.0%
! TTCCATTTTGGATTCTGTTA+TGG + chr5_1:62729161-62729180 Msa0742750:intron 30.0%
AACCATAACAGAATCCAAAA+TGG - chr5_1:62729166-62729185 None:intergenic 30.0%
!! TGGTTGATTTTCGTGAAATT+AGG + chr5_1:62729181-62729200 Msa0742750:intron 30.0%
TAGATAGGAAGCTTGATATA+TGG + chr5_1:62729226-62729245 Msa0742750:intron 30.0%
ATTAACTGTTTATCCAAACG+AGG - chr5_1:62729325-62729344 None:intergenic 30.0%
GGAGATAGCTATAACTTATA+TGG - chr5_1:62729437-62729456 None:intergenic 30.0%
TATAAGTTATAGCTATCTCC+TGG + chr5_1:62729437-62729456 Msa0742750:intron 30.0%
!!! ATGTGATAAGCTGTTTTTGT+AGG + chr5_1:62729498-62729517 Msa0742750:intron 30.0%
AGTCTAATTAATAAGGGTAG+AGG + chr5_1:62729602-62729621 Msa0742750:intron 30.0%
AGGAAGTTGTAGGAAAATTT+AGG + chr5_1:62729622-62729641 Msa0742750:intron 30.0%
GGAAGTTGTAGGAAAATTTA+GGG + chr5_1:62729623-62729642 Msa0742750:intron 30.0%
TTCCTGGAAATAATATTCCT+GGG - chr5_1:62729698-62729717 None:intergenic 30.0%
ATTCCTGGAAATAATATTCC+TGG - chr5_1:62729699-62729718 None:intergenic 30.0%
AAGAAAATGAAAGTCATTCC+TGG - chr5_1:62729714-62729733 None:intergenic 30.0%
! CATTTTCTTGCTCATATGTT+TGG + chr5_1:62729725-62729744 Msa0742750:intron 30.0%
! CTTTTTATTCCTACGCTAAT+AGG - chr5_1:62729895-62729914 None:intergenic 30.0%
CAAAACTTGAAACAAACATG+GGG + chr5_1:62729982-62730001 Msa0742750:intron 30.0%
!! CTTCTAAAAGTGTTTCCTAA+GGG - chr5_1:62730068-62730087 None:intergenic 30.0%
! AGAAGGTTTTGCTGAAATTT+TGG + chr5_1:62730083-62730102 Msa0742750:intron 30.0%
ATGTTCTGTTATTCGATGAA+AGG + chr5_1:62730194-62730213 Msa0742750:intron 30.0%
CCATCAGTATAATGATAAAG+AGG - chr5_1:62730271-62730290 None:intergenic 30.0%
CCTCTTTATCATTATACTGA+TGG + chr5_1:62730268-62730287 Msa0742750:intron 30.0%
! ACTGATGGCTTTTATATGTT+TGG + chr5_1:62730283-62730302 Msa0742750:intron 30.0%
ACCAAACAGAACTGTTATAA+GGG - chr5_1:62730506-62730525 None:intergenic 30.0%
AACCAAACAGAACTGTTATA+AGG - chr5_1:62730507-62730526 None:intergenic 30.0%
ACATTAAAATGCAAGCTTCA+GGG + chr5_1:62730558-62730577 Msa0742750:intron 30.0%
CTAAATTATTCAACACACAC+AGG - chr5_1:62730588-62730607 None:intergenic 30.0%
CCTGAAATTGTATATGGAAA+AGG - chr5_1:62730624-62730643 None:intergenic 30.0%
! CCTTTTCCATATACAATTTC+AGG + chr5_1:62730621-62730640 Msa0742750:intron 30.0%
TATCCTACAATTGAAACTCA+GGG - chr5_1:62730720-62730739 None:intergenic 30.0%
! TTTCGTAGAGAGATTTTAGA+AGG + chr5_1:62730823-62730842 Msa0742750:intron 30.0%
!! ATTTTAGAAGGAAGTAAAGC+TGG + chr5_1:62730835-62730854 Msa0742750:intron 30.0%
! TCATTTAAGAGTACAGATTC+TGG + chr5_1:62730890-62730909 Msa0742750:intron 30.0%
ACCTCAAAATCAGTTTAGTT+TGG + chr5_1:62730955-62730974 Msa0742750:intron 30.0%
! CATGAACAAGTCTTTTCAAT+TGG + chr5_1:62731081-62731100 Msa0742750:intron 30.0%
! TTCAATTGGTTCTCATCATT+TGG + chr5_1:62731095-62731114 Msa0742750:intron 30.0%
!! TATATCTTTCGGTGCAATTT+TGG + chr5_1:62731127-62731146 Msa0742750:intron 30.0%
TTATCTAAACAAACACGGAA+AGG - chr5_1:62731439-62731458 None:intergenic 30.0%
AGATTATGAAGTAAGCTTTC+TGG - chr5_1:62731586-62731605 None:intergenic 30.0%
AGAAAGCTTACTTCATAATC+TGG + chr5_1:62731585-62731604 Msa0742750:CDS 30.0%
! ACATTGGTTAAACAATGAGA+GGG - chr5_1:62731668-62731687 None:intergenic 30.0%
ATTGTTTAACCAATGTGACT+AGG + chr5_1:62731672-62731691 Msa0742750:intron 30.0%
AGGGTACATATGTTATTCTA+AGG + chr5_1:62731707-62731726 Msa0742750:intron 30.0%
!!! CCTTTTGATTTCATGAAAAG+GGG + chr5_1:62731811-62731830 Msa0742750:CDS 30.0%
TATACCTCTTGTGAGAAAAT+GGG + chr5_1:62731873-62731892 Msa0742750:CDS 30.0%
GCTGGAAAAGAAAAACAAAA+AGG - chr5_1:62732080-62732099 None:intergenic 30.0%
CCAATCAGAAATTATTCTGA+GGG + chr5_1:62732164-62732183 Msa0742750:CDS 30.0%
AAGGAGATAATCCAACATTT+GGG + chr5_1:62732193-62732212 Msa0742750:CDS 30.0%
! ATCATCTTCATCCGTATTTT+AGG + chr5_1:62732232-62732251 Msa0742750:CDS 30.0%
! AAGTCACTAGTATTTTCAGT+TGG - chr5_1:62732408-62732427 None:intergenic 30.0%
!! ACAGGAACTTTTTCTTTCAA+AGG - chr5_1:62732552-62732571 None:intergenic 30.0%
AGTTCAATCTTAGATGTACT+AGG - chr5_1:62732690-62732709 None:intergenic 30.0%
ATTATGCGAAGTGAGAAATT+AGG + chr5_1:62732959-62732978 Msa0742750:intron 30.0%
CCAACATAATAAAAGGGAAT+GGG - chr5_1:62733047-62733066 None:intergenic 30.0%
ACCAACATAATAAAAGGGAA+TGG - chr5_1:62733048-62733067 None:intergenic 30.0%
GCTTTATAAAATGTTCCTTC+TGG + chr5_1:62733257-62733276 Msa0742750:intron 30.0%
TGTTTACAGTCTAAGTTACA+AGG + chr5_1:62733415-62733434 Msa0742750:intron 30.0%
TCATCTTGAATTTCTCTTTC+CGG - chr5_1:62733507-62733526 None:intergenic 30.0%
GAGAAATTCAAGATGACTAT+TGG + chr5_1:62733511-62733530 Msa0742750:CDS 30.0%
AGATGACTATTGGCAATTTA+AGG + chr5_1:62733521-62733540 Msa0742750:CDS 30.0%
AAATCTTGCTGGTAAAGAAA+GGG + chr5_1:62734044-62734063 Msa0742750:CDS 30.0%
! TCTGAGTTATCAGTATTGAA+TGG - chr5_1:62734084-62734103 None:intergenic 30.0%
ATAATGAAAGGCGATCAAAA+AGG + chr5_1:62734187-62734206 Msa0742750:CDS 30.0%
CTGAATTATTCAAGTCTACA+AGG + chr5_1:62734841-62734860 Msa0742750:CDS 30.0%
TCAGAAACATTAGTTACTTC+AGG - chr5_1:62734882-62734901 None:intergenic 30.0%
GTAGAAATATGATCTAACGA+GGG - chr5_1:62734982-62735001 None:intergenic 30.0%
AGTAGAAATATGATCTAACG+AGG - chr5_1:62734983-62735002 None:intergenic 30.0%
TGTTAGGTAAGGTTAAACAA+AGG - chr5_1:62735063-62735082 None:intergenic 30.0%
!!! TCTTTTCAATTTGCTGTGTT+AGG - chr5_1:62735079-62735098 None:intergenic 30.0%
!! ATTCGATTCTAGAACTTCCA+TGG + chr5_1:62728811-62728830 Msa0742750:exon 35.0%
TGTGGTTGTTCTTCATGAAT+CGG - chr5_1:62729076-62729095 None:intergenic 35.0%
!!! TGTTTTAAGTTCATTCCAGG+CGG + chr5_1:62729259-62729278 Msa0742750:intron 35.0%
!! CTTATTTTCAGAAGTTCTCC+AGG - chr5_1:62729458-62729477 None:intergenic 35.0%
! CTGGAGAACTTCTGAAAATA+AGG + chr5_1:62729456-62729475 Msa0742750:intron 35.0%
GCTTATTTGAACTTATCCAC+TGG - chr5_1:62729546-62729565 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr5_1:62729556-62729575 Msa0742750:intron 35.0%
! TTTAGGGTGTGTTTGTTTCA+AGG + chr5_1:62729639-62729658 Msa0742750:intron 35.0%
TTCCCAGGAATATTATTTCC+AGG + chr5_1:62729693-62729712 Msa0742750:intron 35.0%
TCATGTGTGGTTAAAATTCC+TGG + chr5_1:62729923-62729942 Msa0742750:intron 35.0%
CATGTGTGGTTAAAATTCCT+GGG + chr5_1:62729924-62729943 Msa0742750:intron 35.0%
ATTCTCGGGAATATGAGATA+AGG - chr5_1:62730018-62730037 None:intergenic 35.0%
!! CCTTCTAAAAGTGTTTCCTA+AGG - chr5_1:62730069-62730088 None:intergenic 35.0%
! CCTTAGGAAACACTTTTAGA+AGG + chr5_1:62730066-62730085 Msa0742750:intron 35.0%
TAGCATTTACCTCGTGAATA+AGG + chr5_1:62730113-62730132 Msa0742750:intron 35.0%
! GTGAATAAGGCATTAAGGTT+TGG + chr5_1:62730126-62730145 Msa0742750:intron 35.0%
TTCAAGTGCAGTTCATAGTT+TGG - chr5_1:62730406-62730425 None:intergenic 35.0%
ACCCTTATAACAGTTCTGTT+TGG + chr5_1:62730502-62730521 Msa0742750:intron 35.0%
CACATTAAAATGCAAGCTTC+AGG + chr5_1:62730557-62730576 Msa0742750:intron 35.0%
CATTAAAATGCAAGCTTCAG+GGG + chr5_1:62730559-62730578 Msa0742750:intron 35.0%
ATCCTACAATTGAAACTCAG+GGG - chr5_1:62730719-62730738 None:intergenic 35.0%
CTATCCTACAATTGAAACTC+AGG - chr5_1:62730721-62730740 None:intergenic 35.0%
AGTCATGACTCAGTGATTTA+AGG + chr5_1:62730795-62730814 Msa0742750:intron 35.0%
!!! CTAAACTGATTTTGAGGTTC+AGG - chr5_1:62730953-62730972 None:intergenic 35.0%
!! GCCAAACTAAACTGATTTTG+AGG - chr5_1:62730959-62730978 None:intergenic 35.0%
AGTTCATCGAACCTATTCTT+TGG + chr5_1:62731006-62731025 Msa0742750:intron 35.0%
GTTCATCGAACCTATTCTTT+GGG + chr5_1:62731007-62731026 Msa0742750:intron 35.0%
! TTCTTTTCACGGTGGTTTTT+TGG + chr5_1:62731179-62731198 Msa0742750:intron 35.0%
ACAACAATCTCTACATTTGC+AGG + chr5_1:62731252-62731271 Msa0742750:intron 35.0%
GGATGCAATCTAATATGCTA+CGG + chr5_1:62731273-62731292 Msa0742750:intron 35.0%
! CAAGTAAGGATGTTTTCAAC+TGG + chr5_1:62731312-62731331 Msa0742750:intron 35.0%
GTAGGTGTATGATATTGTTG+CGG + chr5_1:62731380-62731399 Msa0742750:intron 35.0%
! CACATTGGTTAAACAATGAG+AGG - chr5_1:62731669-62731688 None:intergenic 35.0%
CAATTATCACCTAGTCACAT+TGG - chr5_1:62731684-62731703 None:intergenic 35.0%
TGACTAGGTGATAATTGTCT+AGG + chr5_1:62731687-62731706 Msa0742750:intron 35.0%
GACTAGGTGATAATTGTCTA+GGG + chr5_1:62731688-62731707 Msa0742750:intron 35.0%
ATGTCTAAGTTTCAGATGCT+TGG + chr5_1:62731736-62731755 Msa0742750:intron 35.0%
AAAGAAGTTGTTGTGACTCA+AGG + chr5_1:62731764-62731783 Msa0742750:intron 35.0%
! CCCCTTTTCATGAAATCAAA+AGG - chr5_1:62731814-62731833 None:intergenic 35.0%
CTATACCTCTTGTGAGAAAA+TGG + chr5_1:62731872-62731891 Msa0742750:CDS 35.0%
ATGTATTCATATATACCGCC+TGG + chr5_1:62731988-62732007 Msa0742750:intron 35.0%
GCCAATCAGAAATTATTCTG+AGG + chr5_1:62732163-62732182 Msa0742750:CDS 35.0%
CCCTCAGAATAATTTCTGAT+TGG - chr5_1:62732167-62732186 None:intergenic 35.0%
! ATTATTCTGAGGGTGAAACA+AGG + chr5_1:62732174-62732193 Msa0742750:CDS 35.0%
CAAGGAGATAATCCAACATT+TGG + chr5_1:62732192-62732211 Msa0742750:CDS 35.0%
TTTGGACAAGAATAGAAGTC+AGG + chr5_1:62732311-62732330 Msa0742750:CDS 35.0%
ATCTGTCTATGGAAATGAAG+AGG + chr5_1:62732371-62732390 Msa0742750:CDS 35.0%
GATTAGAAGGCAGAAGAAAT+GGG - chr5_1:62732836-62732855 None:intergenic 35.0%
ACACAAACAGATGAATTGCA+GGG - chr5_1:62732932-62732951 None:intergenic 35.0%
ACGATGTAGAACATGATTCA+AGG + chr5_1:62732994-62733013 Msa0742750:intron 35.0%
! CCCATTCCCTTTTATTATGT+TGG + chr5_1:62733044-62733063 Msa0742750:intron 35.0%
TTGTATTTGAATCAGCCAGA+AGG - chr5_1:62733275-62733294 None:intergenic 35.0%
GACTATTGGCAATTTAAGGA+AGG + chr5_1:62733525-62733544 Msa0742750:CDS 35.0%
ATTGGCAATTTAAGGAAGGA+TGG + chr5_1:62733529-62733548 Msa0742750:CDS 35.0%
! TGCTAACTGTAGTTTGAGAT+TGG - chr5_1:62733579-62733598 None:intergenic 35.0%
AACTACAGTTAGCATTCATG+CGG + chr5_1:62733585-62733604 Msa0742750:CDS 35.0%
!!! ATTTTTAGTAAGGCGTCAAG+TGG + chr5_1:62733667-62733686 Msa0742750:CDS 35.0%
TTTAGTCATATGTGCTTCAG+AGG - chr5_1:62733872-62733891 None:intergenic 35.0%
GAAATCTTGCTGGTAAAGAA+AGG + chr5_1:62734043-62734062 Msa0742750:CDS 35.0%
AGATAAAAGTCACAAGTCTG+AGG + chr5_1:62734101-62734120 Msa0742750:CDS 35.0%
CATGTTTACTGGATCTTGAA+CGG - chr5_1:62734218-62734237 None:intergenic 35.0%
AAGATCCAGTAAACATGAAG+AGG + chr5_1:62734221-62734240 Msa0742750:CDS 35.0%
CAACGACAAGTATTCTCATA+GGG + chr5_1:62734416-62734435 Msa0742750:CDS 35.0%
!!! CATCAACATGGCTCTAATTT+TGG - chr5_1:62734916-62734935 None:intergenic 35.0%
CAAAATTAGAGCCATGTTGA+TGG + chr5_1:62734914-62734933 Msa0742750:CDS 35.0%
ACGAGGGTTAAAAATACATC+AGG - chr5_1:62734966-62734985 None:intergenic 35.0%
! CATATTTCTACTGTTCCATC+AGG + chr5_1:62734991-62735010 Msa0742750:three_prime_UTR 35.0%
TCCATCAGGCATAAATCATT+TGG + chr5_1:62735005-62735024 Msa0742750:three_prime_UTR 35.0%
!! TCAATTTGCTGTGTTAGGTA+AGG - chr5_1:62735074-62735093 None:intergenic 35.0%
ATGATCAAGGTCAGCTTCAA+CGG - chr5_1:62729023-62729042 None:intergenic 40.0%
!! CGAGATAACGTTGATGATCA+AGG - chr5_1:62729036-62729055 None:intergenic 40.0%
TCATGAATCGGAGAAGAAGA+AGG - chr5_1:62729064-62729083 None:intergenic 40.0%
CATGAAGAACAACCACAAGA+AGG + chr5_1:62729079-62729098 Msa0742750:CDS 40.0%
ATTAGGAGGTTACCTTCTTG+TGG - chr5_1:62729094-62729113 None:intergenic 40.0%
! AATTTTACGGTTTTTCCGCC+TGG - chr5_1:62729277-62729296 None:intergenic 40.0%
AAGGTTAATTAGGCCTCGTT+TGG + chr5_1:62729309-62729328 Msa0742750:intron 40.0%
CAAACAGAAACTTATGCCAG+TGG + chr5_1:62729527-62729546 Msa0742750:intron 40.0%
TAATCCACTAAGGTCCTGTT+TGG - chr5_1:62729573-62729592 None:intergenic 40.0%
ATAAGGGTAGAGGAAGTTGT+AGG + chr5_1:62729612-62729631 Msa0742750:intron 40.0%
TATTCCTACGCTAATAGGGT+GGG - chr5_1:62729890-62729909 None:intergenic 40.0%
TTATTCCTACGCTAATAGGG+TGG - chr5_1:62729891-62729910 None:intergenic 40.0%
! CTAAGGGTGTGTTTGTTTCA+AGG - chr5_1:62730052-62730071 None:intergenic 40.0%
CTTGAAACAAACACACCCTT+AGG + chr5_1:62730050-62730069 Msa0742750:intron 40.0%
! ACCTCGTGAATAAGGCATTA+AGG + chr5_1:62730121-62730140 Msa0742750:intron 40.0%
! ACCTTAATGCCTTATTCACG+AGG - chr5_1:62730125-62730144 None:intergenic 40.0%
TCTTGTGAACCATGAACAAC+AGG - chr5_1:62730376-62730395 None:intergenic 40.0%
TGGAACTGATGTGTTGAAGA+TGG + chr5_1:62730467-62730486 Msa0742750:intron 40.0%
CTGATGTGTTGAAGATGGTT+TGG + chr5_1:62730472-62730491 Msa0742750:intron 40.0%
ACAGAACTGTTATAAGGGTG+TGG - chr5_1:62730501-62730520 None:intergenic 40.0%
GTGGCACCTGAAATTGTATA+TGG - chr5_1:62730630-62730649 None:intergenic 40.0%
GACTCGTTAGAGATCTGAAT+CGG - chr5_1:62730779-62730798 None:intergenic 40.0%
CCAAACTGAACCCAAAGAAT+AGG - chr5_1:62731020-62731039 None:intergenic 40.0%
! CCTATTCTTTGGGTTCAGTT+TGG + chr5_1:62731017-62731036 Msa0742750:intron 40.0%
ATACAAACTGAACCATGACG+AGG + chr5_1:62731046-62731065 Msa0742750:intron 40.0%
ACTTGTTCATGCTCGTTTGT+AGG - chr5_1:62731072-62731091 None:intergenic 40.0%
AAACTAAACACTGTCTTGGG+CGG - chr5_1:62731212-62731231 None:intergenic 40.0%
CATGTGTCAGACTACAAGTA+AGG + chr5_1:62731298-62731317 Msa0742750:intron 40.0%
! GTTAGTGCTACTACTGTTGT+AGG + chr5_1:62731362-62731381 Msa0742750:intron 40.0%
! CTTTCTGGTACTGGAAAGTT+GGG - chr5_1:62731571-62731590 None:intergenic 40.0%
! TGAAGTAAGCTTTCTGGTAC+TGG - chr5_1:62731580-62731599 None:intergenic 40.0%
! TCATCCCATTTTCTCACAAG+AGG - chr5_1:62731880-62731899 None:intergenic 40.0%
!! ATTTTAAAGAGGGTCTTGCC+AGG - chr5_1:62732009-62732028 None:intergenic 40.0%
ATCTGATGTAGCTTCTCGTT+TGG - chr5_1:62732105-62732124 None:intergenic 40.0%
GCAATGTTTGTCAGCAAACA+TGG + chr5_1:62732138-62732157 Msa0742750:CDS 40.0%
TACGGATGAAGATGATGATC+AGG - chr5_1:62732228-62732247 None:intergenic 40.0%
AAAGATGACAAAACCGATGC+AGG + chr5_1:62732282-62732301 Msa0742750:CDS 40.0%
TCTTTGCTTGGATCTGTCTA+TGG + chr5_1:62732360-62732379 Msa0742750:CDS 40.0%
CTATGGAAATGAAGAGGATG+AGG + chr5_1:62732377-62732396 Msa0742750:CDS 40.0%
TTTGAGAGAAACGCACATGT+GGG + chr5_1:62732426-62732445 Msa0742750:CDS 40.0%
AGAAATGCTTCCATCCTTCT+TGG - chr5_1:62732517-62732536 None:intergenic 40.0%
! GACTGATTCCGCTTTATAAC+AGG - chr5_1:62732570-62732589 None:intergenic 40.0%
TTAAGACAGCAACTTCAGCT+AGG + chr5_1:62732601-62732620 Msa0742750:CDS 40.0%
ACTTCAGCTAGGACAAAAAC+AGG + chr5_1:62732612-62732631 Msa0742750:CDS 40.0%
CGATTAGAAGGCAGAAGAAA+TGG - chr5_1:62732837-62732856 None:intergenic 40.0%
AGTTCTTCAAACTGCTGAAG+AGG + chr5_1:62732878-62732897 Msa0742750:CDS 40.0%
CACAAACAGATGAATTGCAG+GGG - chr5_1:62732931-62732950 None:intergenic 40.0%
CACACAAACAGATGAATTGC+AGG - chr5_1:62732933-62732952 None:intergenic 40.0%
CTGCAATTCATCTGTTTGTG+TGG + chr5_1:62732931-62732950 Msa0742750:intron 40.0%
ACAGTCTAAGTTACAAGGCA+AGG + chr5_1:62733420-62733439 Msa0742750:intron 40.0%
CAGTCTAAGTTACAAGGCAA+GGG + chr5_1:62733421-62733440 Msa0742750:intron 40.0%
TTCTGACCTACCAAATGACA+TGG + chr5_1:62733480-62733499 Msa0742750:CDS 40.0%
! GTTTGAGATTGGCTGTCTTT+GGG - chr5_1:62733568-62733587 None:intergenic 40.0%
! AGTTTGAGATTGGCTGTCTT+TGG - chr5_1:62733569-62733588 None:intergenic 40.0%
TATTCTTCAGGCAGCTACTA+GGG + chr5_1:62733621-62733640 Msa0742750:CDS 40.0%
!! CAGCTACTAGGGGTATTAAA+AGG + chr5_1:62733632-62733651 Msa0742750:CDS 40.0%
!!! CACTTTTTCTGCAATAGCCT+TGG - chr5_1:62733821-62733840 None:intergenic 40.0%
CAAGGCTATTGCAGAAAAAG+TGG + chr5_1:62733819-62733838 Msa0742750:CDS 40.0%
TTCGCAGCCATGATAAAAAG+TGG + chr5_1:62733934-62733953 Msa0742750:CDS 40.0%
CCATGATAAAAAGTGGAGCT+GGG + chr5_1:62733941-62733960 Msa0742750:CDS 40.0%
!! CTTGGCAGTTCGCTTTTAAA+TGG - chr5_1:62733967-62733986 None:intergenic 40.0%
GCTGAGATTAGAAATCTTGC+TGG + chr5_1:62734033-62734052 Msa0742750:CDS 40.0%
ATCCAGTAAACATGAAGAGG+AGG + chr5_1:62734224-62734243 Msa0742750:CDS 40.0%
TTCCTCCTCTTCATGTTTAC+TGG - chr5_1:62734229-62734248 None:intergenic 40.0%
!!! ACGTGATCGATGCTTTTTTC+TGG - chr5_1:62734316-62734335 None:intergenic 40.0%
ATGAGAATACTTGTCGTTGG+AGG - chr5_1:62734415-62734434 None:intergenic 40.0%
CCTATGAGAATACTTGTCGT+TGG - chr5_1:62734418-62734437 None:intergenic 40.0%
CCAACGACAAGTATTCTCAT+AGG + chr5_1:62734415-62734434 Msa0742750:CDS 40.0%
AGTATTCTCATAGGGAGAGT+AGG + chr5_1:62734424-62734443 Msa0742750:CDS 40.0%
ATGTCTATGCTCATCATCAG+AGG - chr5_1:62734607-62734626 None:intergenic 40.0%
TATGCTTTGTCTTTCTGCTC+CGG - chr5_1:62734713-62734732 None:intergenic 40.0%
GAAAGACAAAGCATAAGAGC+AGG + chr5_1:62734718-62734737 Msa0742750:CDS 40.0%
GCCAAATGATTTATGCCTGA+TGG - chr5_1:62735009-62735028 None:intergenic 40.0%
TTCCAATCAACGAGAGCTTC+CGG - chr5_1:62728905-62728924 None:intergenic 45.0%
GATGTTCGTCATCTTCTCTC+CGG + chr5_1:62728947-62728966 Msa0742750:CDS 45.0%
CACTAAGGTCCTGTTTGGAT+TGG - chr5_1:62729568-62729587 None:intergenic 45.0%
CAATCCAAACAGGACCTTAG+TGG + chr5_1:62729566-62729585 Msa0742750:intron 45.0%
TTCCTTGTAATGCTGTTCCC+AGG + chr5_1:62729678-62729697 Msa0742750:intron 45.0%
TTCCTGGGAACAGCATTACA+AGG - chr5_1:62729683-62729702 None:intergenic 45.0%
AATTCCCACCCTATTAGCGT+AGG + chr5_1:62729883-62729902 Msa0742750:intron 45.0%
CCAACTAAAGCACATAACGC+AGG - chr5_1:62730165-62730184 None:intergenic 45.0%
CCTGCGTTATGTGCTTTAGT+TGG + chr5_1:62730162-62730181 Msa0742750:intron 45.0%
ACAAGTAGGCCTGTTGTTCA+TGG + chr5_1:62730364-62730383 Msa0742750:intron 45.0%
! CGGTTAAACAGAAGAGTGTG+TGG - chr5_1:62730649-62730668 None:intergenic 45.0%
ATTTGAACCGCAACTTGGCA+AGG - chr5_1:62730678-62730697 None:intergenic 45.0%
GACCCCTGAGTTTCAATTGT+AGG + chr5_1:62730714-62730733 Msa0742750:intron 45.0%
TTAGAGATCTGAATCGGCGA+TGG - chr5_1:62730773-62730792 None:intergenic 45.0%
! TTGGCTGCTGGCTATTAAGT+TGG + chr5_1:62731146-62731165 Msa0742750:intron 45.0%
TCAGGTGCAGTGAATTCATC+AGG + chr5_1:62731463-62731482 Msa0742750:CDS 45.0%
ATCACTGTCCTTTGTCTCAG+TGG - chr5_1:62731530-62731549 None:intergenic 45.0%
!! AAGGACAGTGATACTGACTC+TGG + chr5_1:62731538-62731557 Msa0742750:CDS 45.0%
! GCTTTCTGGTACTGGAAAGT+TGG - chr5_1:62731572-62731591 None:intergenic 45.0%
!! GGAAAAAAGGTGCCTGTGAA+TGG - chr5_1:62731793-62731812 None:intergenic 45.0%
TGATGTAGCTTCTCGTTTGG+AGG - chr5_1:62732102-62732121 None:intergenic 45.0%
GAAGATGATGATCAGGCATC+AGG - chr5_1:62732221-62732240 None:intergenic 45.0%
CAAGAATAGAAGTCAGGAGC+TGG + chr5_1:62732317-62732336 Msa0742750:CDS 45.0%
GGAAATGAAGAGGATGAGGA+TGG + chr5_1:62732381-62732400 Msa0742750:CDS 45.0%
! CTTTGAGAGAAACGCACATG+TGG + chr5_1:62732425-62732444 Msa0742750:CDS 45.0%
! CTGCTACTTCTGCATCATCA+GGG + chr5_1:62732460-62732479 Msa0742750:CDS 45.0%
! TGCTACTTCTGCATCATCAG+GGG + chr5_1:62732461-62732480 Msa0742750:CDS 45.0%
ATCTTCAGATGCAGCCAAGA+AGG + chr5_1:62732500-62732519 Msa0742750:CDS 45.0%
ACCATTAGACCCTGAATCTG+GGG - chr5_1:62732643-62732662 None:intergenic 45.0%
CACCATTAGACCCTGAATCT+GGG - chr5_1:62732644-62732663 None:intergenic 45.0%
TCAGATGGAGGTTCAACAAC+AGG - chr5_1:62732714-62732733 None:intergenic 45.0%
TGAGTCTGTTCTTGCTGAAC+AGG + chr5_1:62732791-62732810 Msa0742750:CDS 45.0%
GGTAGGTCAGAACTCATAGA+CGG - chr5_1:62733472-62733491 None:intergenic 45.0%
ACCTACCAAATGACATGGAC+CGG + chr5_1:62733485-62733504 Msa0742750:CDS 45.0%
TCTTTCCGGTCCATGTCATT+TGG - chr5_1:62733493-62733512 None:intergenic 45.0%
CTATTCTTCAGGCAGCTACT+AGG + chr5_1:62733620-62733639 Msa0742750:CDS 45.0%
ATTCTTCAGGCAGCTACTAG+GGG + chr5_1:62733622-62733641 Msa0742750:CDS 45.0%
! AGTAAGGCGTCAAGTGGTAA+TGG + chr5_1:62733673-62733692 Msa0742750:CDS 45.0%
AATTCCCACCATCACTTCCA+AGG - chr5_1:62733705-62733724 None:intergenic 45.0%
! TTTTCCGTCATCTCAACTGC+AGG + chr5_1:62733741-62733760 Msa0742750:CDS 45.0%
TTTCCGTCATCTCAACTGCA+GGG + chr5_1:62733742-62733761 Msa0742750:CDS 45.0%
TCTGCATTCAGATTGCGATG+TGG - chr5_1:62733775-62733794 None:intergenic 45.0%
ACATCGCAATCTGAATGCAG+AGG + chr5_1:62733774-62733793 Msa0742750:CDS 45.0%
GCCATGATAAAAAGTGGAGC+TGG + chr5_1:62733940-62733959 Msa0742750:CDS 45.0%
!!! CCCAGCTCCACTTTTTATCA+TGG - chr5_1:62733944-62733963 None:intergenic 45.0%
GGCTCAACAGATAAAGCTCT+TGG - chr5_1:62733985-62734004 None:intergenic 45.0%
CTTGCTGGTAAAGAAAGGGA+AGG + chr5_1:62734048-62734067 Msa0742750:CDS 45.0%
ACATGAAGAGGAGGAAGAAG+AGG + chr5_1:62734233-62734252 Msa0742750:CDS 45.0%
GTCGATCTTCACACAGAAGT+CGG + chr5_1:62734334-62734353 Msa0742750:CDS 45.0%
TCGATCTTCACACAGAAGTC+GGG + chr5_1:62734335-62734354 Msa0742750:CDS 45.0%
AGAATACTTGTCGTTGGAGG+AGG - chr5_1:62734412-62734431 None:intergenic 45.0%
! AGAGCGGTGTTTTTCATCAG+AGG - chr5_1:62734514-62734533 None:intergenic 45.0%
TACGCGAATGTCTATGCTCA+TGG - chr5_1:62734572-62734591 None:intergenic 45.0%
! CTGATGATGAGCATAGTCAC+CGG + chr5_1:62734691-62734710 Msa0742750:CDS 45.0%
AGACAAGTCACAAGTAAGCG+AGG + chr5_1:62734791-62734810 Msa0742750:CDS 45.0%
AAGTCACAAGTAAGCGAGGT+TGG + chr5_1:62734795-62734814 Msa0742750:CDS 45.0%
AGTCACAAGTAAGCGAGGTT+GGG + chr5_1:62734796-62734815 Msa0742750:CDS 45.0%
GTTACTTCAGGTGACTGAGA+GGG - chr5_1:62734870-62734889 None:intergenic 45.0%
AGTTACTTCAGGTGACTGAG+AGG - chr5_1:62734871-62734890 None:intergenic 45.0%
!!! AATACAATAATTATTTTATT+TGG + chr5_1:62733288-62733307 Msa0742750:intron 5.0%
!!! ATACAATAATTATTTTATTT+GGG + chr5_1:62733289-62733308 Msa0742750:intron 5.0%
TCCATGGATCTCGAAGTCGT+TGG + chr5_1:62728827-62728846 Msa0742750:exon 50.0%
ATTGCAGCGGATGATGAGTG+CGG - chr5_1:62728997-62729016 None:intergenic 50.0%
GCTTCAACGGTAGATTGCAG+CGG - chr5_1:62729010-62729029 None:intergenic 50.0%
GCAACTTGGCAAGGTGGAAT+CGG - chr5_1:62730669-62730688 None:intergenic 50.0%
GATTCCACCTTGCCAAGTTG+CGG + chr5_1:62730668-62730687 Msa0742750:intron 50.0%
CTCGGATTTGAACCGCAACT+TGG - chr5_1:62730683-62730702 None:intergenic 50.0%
!!! TTCGGTGCAATTTTGGCTGC+TGG + chr5_1:62731134-62731153 Msa0742750:intron 50.0%
TAGCGTGTCCACTGAGACAA+AGG + chr5_1:62731519-62731538 Msa0742750:CDS 50.0%
GACTCAAGGTAGCCATTCAC+AGG + chr5_1:62731778-62731797 Msa0742750:intron 50.0%
TTAAAGAGGGTCTTGCCAGG+CGG - chr5_1:62732006-62732025 None:intergenic 50.0%
GGCATCAGGAACCCAAATGT+TGG - chr5_1:62732207-62732226 None:intergenic 50.0%
AACCGATGCAGGCTCAACTT+TGG + chr5_1:62732293-62732312 Msa0742750:CDS 50.0%
GTCCAAAGTTGAGCCTGCAT+CGG - chr5_1:62732298-62732317 None:intergenic 50.0%
AGTCAGGAGCTGGATCAAAC+AGG + chr5_1:62732327-62732346 Msa0742750:CDS 50.0%
! GGAGGTGCATTGTCTTTGCT+TGG + chr5_1:62732348-62732367 Msa0742750:CDS 50.0%
! GCTGCTACTTCTGCATCATC+AGG + chr5_1:62732459-62732478 Msa0742750:CDS 50.0%
TCAGATGCAGCCAAGAAGGA+TGG + chr5_1:62732504-62732523 Msa0742750:CDS 50.0%
GCACCATTAGACCCTGAATC+TGG - chr5_1:62732645-62732664 None:intergenic 50.0%
AACAGGATCGTGCTCATGGA+AGG + chr5_1:62732808-62732827 Msa0742750:CDS 50.0%
! TCCGGTCCATGTCATTTGGT+AGG - chr5_1:62733489-62733508 None:intergenic 50.0%
! GATTGGCTGTCTTTGGGAGT+TGG - chr5_1:62733562-62733581 None:intergenic 50.0%
AGCTGCCTGAAGAATAGCTG+CGG - chr5_1:62733617-62733636 None:intergenic 50.0%
!! GCGTCAAGTGGTAATGGTCA+AGG + chr5_1:62733679-62733698 Msa0742750:CDS 50.0%
!! AGTGGTAATGGTCAAGGCCT+TGG + chr5_1:62733685-62733704 Msa0742750:CDS 50.0%
AAGGCCTTGGAAGTGATGGT+GGG + chr5_1:62733698-62733717 Msa0742750:CDS 50.0%
GTGGGAATTTGTCCAGCTCT+CGG + chr5_1:62733716-62733735 Msa0742750:CDS 50.0%
AGACCCTGCAGTTGAGATGA+CGG - chr5_1:62733748-62733767 None:intergenic 50.0%
TGCTTCTGTTCCAGTTGCCA+AGG + chr5_1:62733801-62733820 Msa0742750:CDS 50.0%
! TCTGCAATAGCCTTGGCAAC+TGG - chr5_1:62733814-62733833 None:intergenic 50.0%
AAAGTGGCTATTGCAGCAGC+AGG + chr5_1:62733835-62733854 Msa0742750:CDS 50.0%
GAACCTGAAAGTCCAGAGCT+CGG - chr5_1:62734009-62734028 None:intergenic 50.0%
TTCACACAGAAGTCGGGACA+GGG + chr5_1:62734341-62734360 Msa0742750:CDS 50.0%
ATGCAGACAGGGACAGAAAC+AGG + chr5_1:62734364-62734383 Msa0742750:CDS 50.0%
AGGGTGAACATCGACACTTG+AGG + chr5_1:62734466-62734485 Msa0742750:CDS 50.0%
CAGGTCTCATGCTGAAAGAG+AGG + chr5_1:62734737-62734756 Msa0742750:CDS 50.0%
TGCTGAAAGAGAGGCAGAGT+TGG + chr5_1:62734746-62734765 Msa0742750:CDS 50.0%
TGAAAGAGAGGCAGAGTTGG+AGG + chr5_1:62734749-62734768 Msa0742750:CDS 50.0%
GCCAACGACTTCGAGATCCA+TGG - chr5_1:62728831-62728850 None:intergenic 55.0%
!! CGTCGAAAAGCATCGCGTGA+CGG - chr5_1:62728853-62728872 None:intergenic 55.0%
! GCGATGCTTTTCGACGACGA+CGG + chr5_1:62728857-62728876 Msa0742750:CDS 55.0%
CACCGGAAGCTCTCGTTGAT+TGG + chr5_1:62728900-62728919 Msa0742750:CDS 55.0%
! CGTTTGAGGCGAGGAGGAAT+TGG - chr5_1:62728974-62728993 None:intergenic 55.0%
GATGATGAGTGCGGCGTTTG+AGG - chr5_1:62728988-62729007 None:intergenic 55.0%
TGAACCGCAACTTGGCAAGG+TGG - chr5_1:62730675-62730694 None:intergenic 55.0%
CTCGTTTGTAGGCCTCGTCA+TGG - chr5_1:62731061-62731080 None:intergenic 55.0%
TTCATGAAAAGGGGCCGTGC+AGG + chr5_1:62731820-62731839 Msa0742750:CDS 55.0%
CCATCCTAATCCCACCTGCA+CGG - chr5_1:62731837-62731856 None:intergenic 55.0%
GTAGCTTCTCGTTTGGAGGC+TGG - chr5_1:62732098-62732117 None:intergenic 55.0%
CAGGAGCTGGATCAAACAGG+AGG + chr5_1:62732330-62732349 Msa0742750:CDS 55.0%
ACAGGAGTTGCCCCAGATTC+AGG + chr5_1:62732630-62732649 Msa0742750:CDS 55.0%
CAGGAGTTGCCCCAGATTCA+GGG + chr5_1:62732631-62732650 Msa0742750:CDS 55.0%
GCCCCAGATTCAGGGTCTAA+TGG + chr5_1:62732639-62732658 Msa0742750:CDS 55.0%
GCTGAACAGGATCGTGCTCA+TGG + chr5_1:62732804-62732823 Msa0742750:CDS 55.0%
GAACTCATAGACGGATCCGC+TGG - chr5_1:62733463-62733482 None:intergenic 55.0%
AGCAGCCGCAGCTATTCTTC+AGG + chr5_1:62733609-62733628 Msa0742750:CDS 55.0%
GGTCAAGGCCTTGGAAGTGA+TGG + chr5_1:62733694-62733713 Msa0742750:CDS 55.0%
CAAGGCCTTGGAAGTGATGG+TGG + chr5_1:62733697-62733716 Msa0742750:CDS 55.0%
TGACGGAAAACTCCGAGAGC+TGG - chr5_1:62733731-62733750 None:intergenic 55.0%
TATTGCAGCAGCAGGTGAGG+CGG + chr5_1:62733843-62733862 Msa0742750:CDS 55.0%
AGAGGAGGAAGAAGAGGACG+AGG + chr5_1:62734239-62734258 Msa0742750:CDS 55.0%
CTTCACACAGAAGTCGGGAC+AGG + chr5_1:62734340-62734359 Msa0742750:CDS 55.0%
CAGACAGGGACAGAAACAGG+CGG + chr5_1:62734367-62734386 Msa0742750:CDS 55.0%
TAGGCATGACAGCTCCTCTG+AGG + chr5_1:62734443-62734462 Msa0742750:CDS 55.0%
! CATGACAGCTCCTCTGAGGA+GGG + chr5_1:62734447-62734466 Msa0742750:CDS 55.0%
TCGATGTTCACCCTCCTCAG+AGG - chr5_1:62734460-62734479 None:intergenic 55.0%
CACGATGACGTCGAGAAGAG+CGG - chr5_1:62734530-62734549 None:intergenic 55.0%
TCTTCTCGACGTCATCGTGG+AGG + chr5_1:62734531-62734550 Msa0742750:CDS 55.0%
CTTCTCGACGTCATCGTGGA+GGG + chr5_1:62734532-62734551 Msa0742750:CDS 55.0%
AAGAGAGGCAGAGTTGGAGG+AGG + chr5_1:62734752-62734771 Msa0742750:CDS 55.0%
AGAGAGGCAGAGTTGGAGGA+GGG + chr5_1:62734753-62734772 Msa0742750:CDS 55.0%
CACAAGTAAGCGAGGTTGGG+CGG + chr5_1:62734799-62734818 Msa0742750:CDS 55.0%
ACAAGTAAGCGAGGTTGGGC+GGG + chr5_1:62734800-62734819 Msa0742750:CDS 55.0%
GAGGCGAGGAGGAATTGGAC+CGG - chr5_1:62728969-62728988 None:intergenic 60.0%
AGGGGTCTCGCTGTACGACT+CGG - chr5_1:62730701-62730720 None:intergenic 60.0%
ATGAAAAGGGGCCGTGCAGG+TGG + chr5_1:62731823-62731842 Msa0742750:CDS 60.0%
TGAAAAGGGGCCGTGCAGGT+GGG + chr5_1:62731824-62731843 Msa0742750:CDS 60.0%
CCGTGCAGGTGGGATTAGGA+TGG + chr5_1:62731834-62731853 Msa0742750:CDS 60.0%
! CTGCCAGAAGCACACTCCAG+CGG + chr5_1:62733444-62733463 Msa0742750:CDS 60.0%
GATCCGCTGGAGTGTGCTTC+TGG - chr5_1:62733450-62733469 None:intergenic 60.0%
GGCTATTGCAGCAGCAGGTG+AGG + chr5_1:62733840-62733859 Msa0742750:CDS 60.0%
TCTGTTGAGCCACCGAGCTC+TGG + chr5_1:62733994-62734013 Msa0742750:CDS 60.0%
CCTGAAAGTCCAGAGCTCGG+TGG - chr5_1:62734006-62734025 None:intergenic 60.0%
!! CCACCGAGCTCTGGACTTTC+AGG + chr5_1:62734003-62734022 Msa0742750:CDS 60.0%
TCGGGACAGGGATGCAGACA+GGG + chr5_1:62734353-62734372 Msa0742750:CDS 60.0%
! GCATGACAGCTCCTCTGAGG+AGG + chr5_1:62734446-62734465 Msa0742750:CDS 60.0%
CGCTCTTCTCGACGTCATCG+TGG + chr5_1:62734528-62734547 Msa0742750:CDS 60.0%
GAGAGGCAGAGTTGGAGGAG+GGG + chr5_1:62734754-62734773 Msa0742750:CDS 60.0%
AGAGGCAGAGTTGGAGGAGG+GGG + chr5_1:62734755-62734774 Msa0742750:CDS 60.0%
! GCTTTTCGACGACGACGGCC+TGG + chr5_1:62728862-62728881 Msa0742750:CDS 65.0%
TTTCGACGACGACGGCCTGG+CGG + chr5_1:62728865-62728884 Msa0742750:CDS 65.0%
GTGAGTTCACGAACGCCGCC+AGG - chr5_1:62728883-62728902 None:intergenic 65.0%
GGCGGCGTTCGTGAACTCAC+CGG + chr5_1:62728883-62728902 Msa0742750:CDS 65.0%
! TGAGTGCGGCGTTTGAGGCG+AGG - chr5_1:62728983-62729002 None:intergenic 65.0%
GTCGGGACAGGGATGCAGAC+AGG + chr5_1:62734352-62734371 Msa0742750:CDS 65.0%
! GTGCGGCGTTTGAGGCGAGG+AGG - chr5_1:62728980-62728999 None:intergenic 70.0%
GGGGCCGTGCAGGTGGGATT+AGG + chr5_1:62731830-62731849 Msa0742750:CDS 70.0%
!! GGTTGGGCGGGCTAGCAGAG+AGG + chr5_1:62734812-62734831 Msa0742750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 62728738 62735110 62728738 ID=Msa0742750;Name=Msa0742750
chr5_1 mRNA 62728738 62735110 62728738 ID=Msa0742750-mRNA-1;Parent=Msa0742750;Name=Msa0742750-mRNA-1;_AED=0.23;_eAED=0.23;_QI=92|0.5|0.8|1|1|1|5|163|971
chr5_1 exon 62728738 62729100 62728738 ID=Msa0742750-mRNA-1:exon:18446;Parent=Msa0742750-mRNA-1
chr5_1 exon 62731455 62731606 62731455 ID=Msa0742750-mRNA-1:exon:18447;Parent=Msa0742750-mRNA-1
chr5_1 exon 62731790 62731957 62731790 ID=Msa0742750-mRNA-1:exon:18448;Parent=Msa0742750-mRNA-1
chr5_1 exon 62732099 62732899 62732099 ID=Msa0742750-mRNA-1:exon:18449;Parent=Msa0742750-mRNA-1
chr5_1 exon 62733424 62735110 62733424 ID=Msa0742750-mRNA-1:exon:18450;Parent=Msa0742750-mRNA-1
chr5_1 five_prime_UTR 62728738 62728829 62728738 ID=Msa0742750-mRNA-1:five_prime_utr;Parent=Msa0742750-mRNA-1
chr5_1 CDS 62728830 62729100 62728830 ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1 CDS 62731455 62731606 62731455 ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1 CDS 62731790 62731957 62731790 ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1 CDS 62732099 62732899 62732099 ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1 CDS 62733424 62734947 62733424 ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1 three_prime_UTR 62734948 62735110 62734948 ID=Msa0742750-mRNA-1:three_prime_utr;Parent=Msa0742750-mRNA-1
Gene Sequence

>Msa0742750

ATGGATCTCGAAGTCGTTGGCCGTCACGCGATGCTTTTCGACGACGACGGCCTGGCGGCGTTCGTGAACTCACCGGAAGCTCTCGTTGATTGGAATTCTCTCTCAATCGATCGTTACGATGTTCGTCATCTTCTCTCCGGTCCAATTCCTCCTCGCCTCAAACGCCGCACTCATCATCCGCTGCAATCTACCGTTGAAGCTGACCTTGATCATCAACGTTATCTCGATCTTCCTTCTTCTTCTCCGATTCATGAAGAACAACCACAAGAAGATAATGATTCAGGTGCAGTGAATTCATCAGGCTATCGTGCTGTTGCATTTTCATATGAAAATTCTAGCGTGTCCACTGAGACAAAGGACAGTGATACTGACTCTGGTTTTCGTCCCAACTTTCCAGTACCAGAAAGCTTACTTCATAATCTGCCATTCACAGGCACCTTTTTTCCTTTTGATTTCATGAAAAGGGGCCGTGCAGGTGGGATTAGGATGGTAGAAATTGTTGATTCTATACCTCTTGTGAGAAAATGGGATGAAACATTTCTACATAAAGCTCTAGTTCTTGATCTTTATGATTATTCAAGTATATATGAGCCTCCAAACGAGAAGCTACATCAGATTATTTCAAAGACTGCAATGTTTGTCAGCAAACATGGAAGCCAATCAGAAATTATTCTGAGGGTGAAACAAGGAGATAATCCAACATTTGGGTTCCTGATGCCTGATCATCATCTTCATCCGTATTTTAGGTTTCTTGTTGATCATCAAGAACTTCTGAAAGATGACAAAACCGATGCAGGCTCAACTTTGGACAAGAATAGAAGTCAGGAGCTGGATCAAACAGGAGGTGCATTGTCTTTGCTTGGATCTGTCTATGGAAATGAAGAGGATGAGGATGGTCCAACTGAAAATACTAGTGACTTTGAGAGAAACGCACATGTGGGAGCTGTTGATGCTGCTACTTCTGCATCATCAGGGGTAGAGCAAGCACAATCATCTTCAGATGCAGCCAAGAAGGATGGAAGCATTTCTAAAAACCAAATACCTTTGAAAGAAAAAGTTCCTGTTATAAAGCGGAATCAGTCTATCAGTATTGTTAAGACAGCAACTTCAGCTAGGACAAAAACAGGAGTTGCCCCAGATTCAGGGTCTAATGGTGCAAATAAATCACAGACTTCTGTGCCTAGTACATCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTAAAGATAGTTATTGATAAAATAGTTGAGTTCATCTTAAAAAATGGAAGGCAATTTGAGTCTGTTCTTGCTGAACAGGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCTTCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGTCTAAGTTACAAGGCAAGGGCTGCCAGAAGCACACTCCAGCGGATCCGTCTATGAGTTCTGACCTACCAAATGACATGGACCGGAAAGAGAAATTCAAGATGACTATTGGCAATTTAAGGAAGGATGGTCAAGATCCAACTCCCAAAGACAGCCAATCTCAAACTACAGTTAGCATTCATGCGGCAGCAGCCGCAGCTATTCTTCAGGCAGCTACTAGGGGTATTAAAAGGCCTAATTTAGAAATTTTTAGTAAGGCGTCAAGTGGTAATGGTCAAGGCCTTGGAAGTGATGGTGGGAATTTGTCCAGCTCTCGGAGTTTTCCGTCATCTCAACTGCAGGGTCTTGTTCCACATCGCAATCTGAATGCAGAGGCTCATGCTTCTGTTCCAGTTGCCAAGGCTATTGCAGAAAAAGTGGCTATTGCAGCAGCAGGTGAGGCGGACTCCTCTGAAGCACATATGACTAAAGAGCAAAAGCTTAAAGCAGAGAGATTGAAACGAGCAAAGATGTTCGCAGCCATGATAAAAAGTGGAGCTGGGCCATTTAAAAGCGAACTGCCAAGAGCTTTATCTGTTGAGCCACCGAGCTCTGGACTTTCAGGTTCAGATGCTGAGATTAGAAATCTTGCTGGTAAAGAAAGGGAAGGAAGTTCTGTTCCATTCAATACTGATAACTCAGATAAAAGTCACAAGTCTGAGGAAAAGCTTTCTGATGATAATTCAGATAAAAGTCACAAGTCTGAAGAAAAACTTACTGTTGATAATAATGAAAGGCGATCAAAAAGGAAGTACCGTTCAAGATCCAGTAAACATGAAGAGGAGGAAGAAGAGGACGAGGATGATGAAGAAGAAGAAGAAAATAAAGAAGATACAAGGGATCACAAAAGATCCAGAAAAAAGCATCGATCACGTCGATCTTCACACAGAAGTCGGGACAGGGATGCAGACAGGGACAGAAACAGGCGGAAGCACAAGAGAAGAGATTCCTCCTCCAACGACAAGTATTCTCATAGGGAGAGTAGGCATGACAGCTCCTCTGAGGAGGGTGAACATCGACACTTGAGGCATCAATGTAAATATGAAAGCTCCTCTGATGAAAAACACCGCTCTTCTCGACGTCATCGTGGAGGGAGCAAGTTGTCAGACCATGAGCATAGACATTCGCGTAAACATTATAGTTCCTCTGATGATGAGCATAGACATTCGCGTAAACGTTATAGTTCATCTGATGATGAGCATAGACATTCGCGTAAACATTATAGTTCATCTGATGATGAGCATAGTCACCGGAGCAGAAAGACAAAGCATAAGAGCAGGTCTCATGCTGAAAGAGAGGCAGAGTTGGAGGAGGGGGAAATAGTGAAATCAGACAAGTCACAAGTAAGCGAGGTTGGGCGGGCTAGCAGAGAGGCTTCTGCTGAATTATTCAAGTCTACAAGGGCACCCTCTCAGTCACCTGAAGTAACTAATGTTTCTGATGAGCTTAGAGCCAAAATTAGAGCCATGTTGATGGAAAATTTGTAA
Protein sequence

>Msa0742750

MDLEVVGRHAMLFDDDGLAAFVNSPEALVDWNSLSIDRYDVRHLLSGPIPPRLKRRTHHPLQSTVEADLDHQRYLDLPSSSPIHEEQPQEDNDSGAVNSSGYRAVAFSYENSSVSTETKDSDTDSGFRPNFPVPESLLHNLPFTGTFFPFDFMKRGRAGGIRMVEIVDSIPLVRKWDETFLHKALVLDLYDYSSIYEPPNEKLHQIISKTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKDDKTDAGSTLDKNRSQELDQTGGALSLLGSVYGNEEDEDGPTENTSDFERNAHVGAVDAATSASSGVEQAQSSSDAAKKDGSISKNQIPLKEKVPVIKRNQSISIVKTATSARTKTGVAPDSGSNGANKSQTSVPSTSKIELPVVEPPSDLKIVIDKIVEFILKNGRQFESVLAEQDRAHGRFPFLLPSNRYHTYYLKVLQTAEESKLQGKGCQKHTPADPSMSSDLPNDMDRKEKFKMTIGNLRKDGQDPTPKDSQSQTTVSIHAAAAAAILQAATRGIKRPNLEIFSKASSGNGQGLGSDGGNLSSSRSFPSSQLQGLVPHRNLNAEAHASVPVAKAIAEKVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGPFKSELPRALSVEPPSSGLSGSDAEIRNLAGKEREGSSVPFNTDNSDKSHKSEEKLSDDNSDKSHKSEEKLTVDNNERRSKRKYRSRSSKHEEEEEEDEDDEEEEENKEDTRDHKRSRKKHRSRRSSHRSRDRDADRDRNRRKHKRRDSSSNDKYSHRESRHDSSSEEGEHRHLRHQCKYESSSDEKHRSSRRHRGGSKLSDHEHRHSRKHYSSSDDEHRHSRKRYSSSDDEHRHSRKHYSSSDDEHSHRSRKTKHKSRSHAEREAELEEGEIVKSDKSQVSEVGRASREASAELFKSTRAPSQSPEVTNVSDELRAKIRAMLMENL*