AlfalfaGEDB | Msa0742750

M. sativa cultivar zhongmu-4 / Msa0742750

KEGG: -
GO: GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
PFAM: PF09750.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742750	XP_003617617.1	90.525	971	27	4	1	971	1	906	0.0	1734

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742750	sp\|Q12872\|SFSWA_HUMAN	38.947	95	52	2	187	281	192	280	1.42e-11	72.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742750	G7K8M3	90.525	971	27	4	1	971	1	906	0.0	1734

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004860	Msa0742750	0.810781	9.718358e-51	-8.615850e-47
Msa0007440	Msa0742750	0.841924	3.536525e-58	-8.615850e-47
Msa0010490	Msa0742750	0.825957	3.530320e-54	-8.615850e-47
Msa0010500	Msa0742750	0.825147	5.493455e-54	-8.615850e-47
Msa0015140	Msa0742750	0.835127	2.010569e-56	-8.615850e-47
Msa0015610	Msa0742750	0.817355	3.442915e-52	-8.615850e-47
Msa0020930	Msa0742750	0.801779	7.664429e-49	-8.615850e-47
Msa0028660	Msa0742750	0.809890	1.513102e-50	-8.615850e-47
Msa0032470	Msa0742750	0.833433	5.348197e-56	-8.615850e-47
Msa0036140	Msa0742750	0.807565	4.750368e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742750	MtrunA17_Chr5g0444691	96.711	760	16	2	212	971	1	751	0.0	1459
Msa0742750	MtrunA17_Chr5g0444681	95.745	141	6	0	1	141	1	141	3.69e-91	286

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742750	AT5G55100.2	40.675	1008	392	28	1	971	1	839	5.85e-179	541
Msa0742750	AT5G55100.1	40.675	1008	392	28	1	971	1	839	8.09e-179	541
Msa0742750	AT5G55100.10	38.201	767	327	23	239	971	1	654	2.47e-108	350
Msa0742750	AT5G55100.3	38.201	767	327	23	239	971	1	654	2.47e-108	350
Msa0742750	AT5G55100.5	38.201	767	327	23	239	971	1	654	2.47e-108	350
Msa0742750	AT5G55100.6	38.201	767	327	23	239	971	1	654	2.47e-108	350
Msa0742750	AT5G55100.11	38.201	767	327	23	239	971	1	654	2.47e-108	350
Msa0742750	AT5G55100.7	38.201	767	327	23	239	971	1	654	2.69e-108	350
Msa0742750	AT5G55100.4	38.201	767	327	23	239	971	1	654	2.69e-108	350
Msa0742750	AT5G55100.8	38.201	767	327	23	239	971	1	654	2.69e-108	350

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Find 220 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGACAAAACCGATGC+AGG	0.500690	5_1:+62732282	Msa0742750:CDS
AAAGTGGCTATTGCAGCAGC+AGG	0.551862	5_1:+62733835	Msa0742750:CDS
AAATCTTGCTGGTAAAGAAA+GGG	0.523325	5_1:+62734044	Msa0742750:CDS
AAATTTGTAAAAGCAAAATT+AGG	0.322634	5_1:+62734938	Msa0742750:exon
AACAGGATCGTGCTCATGGA+AGG	0.546005	5_1:+62732808	Msa0742750:CDS
AACCGATGCAGGCTCAACTT+TGG	0.442622	5_1:+62732293	Msa0742750:CDS
AACTACAGTTAGCATTCATG+CGG	0.648226	5_1:+62733585	Msa0742750:CDS
AAGAAAATAAAGAAGATACA+AGG	0.502836	5_1:+62734277	Msa0742750:CDS
AAGAGAGGCAGAGTTGGAGG+AGG	0.507274	5_1:+62734752	Msa0742750:CDS
AAGATCCAGTAAACATGAAG+AGG	0.583036	5_1:+62734221	Msa0742750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAATGAATGAATTAGG+AGG	-	chr5_1:62729108-62729127	None:intergenic	30.0%
AACCATAACAGAATCCAAAA+TGG	-	chr5_1:62729166-62729185	None:intergenic	30.0%
TAGATAGGAAGCTTGATATA+TGG	+	chr5_1:62729226-62729245	Msa0742750:intron	30.0%
ATTAACTGTTTATCCAAACG+AGG	-	chr5_1:62729325-62729344	None:intergenic	30.0%
GGAGATAGCTATAACTTATA+TGG	-	chr5_1:62729437-62729456	None:intergenic	30.0%
TATAAGTTATAGCTATCTCC+TGG	+	chr5_1:62729437-62729456	Msa0742750:intron	30.0%
AGTCTAATTAATAAGGGTAG+AGG	+	chr5_1:62729602-62729621	Msa0742750:intron	30.0%
AGGAAGTTGTAGGAAAATTT+AGG	+	chr5_1:62729622-62729641	Msa0742750:intron	30.0%
GGAAGTTGTAGGAAAATTTA+GGG	+	chr5_1:62729623-62729642	Msa0742750:intron	30.0%
TTCCTGGAAATAATATTCCT+GGG	-	chr5_1:62729698-62729717	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	62728738	62735110	62728738	ID=Msa0742750;Name=Msa0742750
chr5_1	mRNA	62728738	62735110	62728738	ID=Msa0742750-mRNA-1;Parent=Msa0742750;Name=Msa0742750-mRNA-1;_AED=0.23;_eAED=0.23;_QI=92\|0.5\|0.8\|1\|1\|1\|5\|163\|971
chr5_1	exon	62728738	62729100	62728738	ID=Msa0742750-mRNA-1:exon:18446;Parent=Msa0742750-mRNA-1
chr5_1	exon	62731455	62731606	62731455	ID=Msa0742750-mRNA-1:exon:18447;Parent=Msa0742750-mRNA-1
chr5_1	exon	62731790	62731957	62731790	ID=Msa0742750-mRNA-1:exon:18448;Parent=Msa0742750-mRNA-1
chr5_1	exon	62732099	62732899	62732099	ID=Msa0742750-mRNA-1:exon:18449;Parent=Msa0742750-mRNA-1
chr5_1	exon	62733424	62735110	62733424	ID=Msa0742750-mRNA-1:exon:18450;Parent=Msa0742750-mRNA-1
chr5_1	five_prime_UTR	62728738	62728829	62728738	ID=Msa0742750-mRNA-1:five_prime_utr;Parent=Msa0742750-mRNA-1
chr5_1	CDS	62728830	62729100	62728830	ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1	CDS	62731455	62731606	62731455	ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1	CDS	62731790	62731957	62731790	ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1	CDS	62732099	62732899	62732099	ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1	CDS	62733424	62734947	62733424	ID=Msa0742750-mRNA-1:cds;Parent=Msa0742750-mRNA-1
chr5_1	three_prime_UTR	62734948	62735110	62734948	ID=Msa0742750-mRNA-1:three_prime_utr;Parent=Msa0742750-mRNA-1

Gene Sequence

>Msa0742750

ATGGATCTCGAAGTCGTTGGCCGTCACGCGATGCTTTTCGACGACGACGGCCTGGCGGCGTTCGTGAACTCACCGGAAGCTCTCGTTGATTGGAATTCTCTCTCAATCGATCGTTACGATGTTCGTCATCTTCTCTCCGGTCCAATTCCTCCTCGCCTCAAACGCCGCACTCATCATCCGCTGCAATCTACCGTTGAAGCTGACCTTGATCATCAACGTTATCTCGATCTTCCTTCTTCTTCTCCGATTCATGAAGAACAACCACAAGAAGATAATGATTCAGGTGCAGTGAATTCATCAGGCTATCGTGCTGTTGCATTTTCATATGAAAATTCTAGCGTGTCCACTGAGACAAAGGACAGTGATACTGACTCTGGTTTTCGTCCCAACTTTCCAGTACCAGAAAGCTTACTTCATAATCTGCCATTCACAGGCACCTTTTTTCCTTTTGATTTCATGAAAAGGGGCCGTGCAGGTGGGATTAGGATGGTAGAAATTGTTGATTCTATACCTCTTGTGAGAAAATGGGATGAAACATTTCTACATAAAGCTCTAGTTCTTGATCTTTATGATTATTCAAGTATATATGAGCCTCCAAACGAGAAGCTACATCAGATTATTTCAAAGACTGCAATGTTTGTCAGCAAACATGGAAGCCAATCAGAAATTATTCTGAGGGTGAAACAAGGAGATAATCCAACATTTGGGTTCCTGATGCCTGATCATCATCTTCATCCGTATTTTAGGTTTCTTGTTGATCATCAAGAACTTCTGAAAGATGACAAAACCGATGCAGGCTCAACTTTGGACAAGAATAGAAGTCAGGAGCTGGATCAAACAGGAGGTGCATTGTCTTTGCTTGGATCTGTCTATGGAAATGAAGAGGATGAGGATGGTCCAACTGAAAATACTAGTGACTTTGAGAGAAACGCACATGTGGGAGCTGTTGATGCTGCTACTTCTGCATCATCAGGGGTAGAGCAAGCACAATCATCTTCAGATGCAGCCAAGAAGGATGGAAGCATTTCTAAAAACCAAATACCTTTGAAAGAAAAAGTTCCTGTTATAAAGCGGAATCAGTCTATCAGTATTGTTAAGACAGCAACTTCAGCTAGGACAAAAACAGGAGTTGCCCCAGATTCAGGGTCTAATGGTGCAAATAAATCACAGACTTCTGTGCCTAGTACATCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTAAAGATAGTTATTGATAAAATAGTTGAGTTCATCTTAAAAAATGGAAGGCAATTTGAGTCTGTTCTTGCTGAACAGGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCTTCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGTCTAAGTTACAAGGCAAGGGCTGCCAGAAGCACACTCCAGCGGATCCGTCTATGAGTTCTGACCTACCAAATGACATGGACCGGAAAGAGAAATTCAAGATGACTATTGGCAATTTAAGGAAGGATGGTCAAGATCCAACTCCCAAAGACAGCCAATCTCAAACTACAGTTAGCATTCATGCGGCAGCAGCCGCAGCTATTCTTCAGGCAGCTACTAGGGGTATTAAAAGGCCTAATTTAGAAATTTTTAGTAAGGCGTCAAGTGGTAATGGTCAAGGCCTTGGAAGTGATGGTGGGAATTTGTCCAGCTCTCGGAGTTTTCCGTCATCTCAACTGCAGGGTCTTGTTCCACATCGCAATCTGAATGCAGAGGCTCATGCTTCTGTTCCAGTTGCCAAGGCTATTGCAGAAAAAGTGGCTATTGCAGCAGCAGGTGAGGCGGACTCCTCTGAAGCACATATGACTAAAGAGCAAAAGCTTAAAGCAGAGAGATTGAAACGAGCAAAGATGTTCGCAGCCATGATAAAAAGTGGAGCTGGGCCATTTAAAAGCGAACTGCCAAGAGCTTTATCTGTTGAGCCACCGAGCTCTGGACTTTCAGGTTCAGATGCTGAGATTAGAAATCTTGCTGGTAAAGAAAGGGAAGGAAGTTCTGTTCCATTCAATACTGATAACTCAGATAAAAGTCACAAGTCTGAGGAAAAGCTTTCTGATGATAATTCAGATAAAAGTCACAAGTCTGAAGAAAAACTTACTGTTGATAATAATGAAAGGCGATCAAAAAGGAAGTACCGTTCAAGATCCAGTAAACATGAAGAGGAGGAAGAAGAGGACGAGGATGATGAAGAAGAAGAAGAAAATAAAGAAGATACAAGGGATCACAAAAGATCCAGAAAAAAGCATCGATCACGTCGATCTTCACACAGAAGTCGGGACAGGGATGCAGACAGGGACAGAAACAGGCGGAAGCACAAGAGAAGAGATTCCTCCTCCAACGACAAGTATTCTCATAGGGAGAGTAGGCATGACAGCTCCTCTGAGGAGGGTGAACATCGACACTTGAGGCATCAATGTAAATATGAAAGCTCCTCTGATGAAAAACACCGCTCTTCTCGACGTCATCGTGGAGGGAGCAAGTTGTCAGACCATGAGCATAGACATTCGCGTAAACATTATAGTTCCTCTGATGATGAGCATAGACATTCGCGTAAACGTTATAGTTCATCTGATGATGAGCATAGACATTCGCGTAAACATTATAGTTCATCTGATGATGAGCATAGTCACCGGAGCAGAAAGACAAAGCATAAGAGCAGGTCTCATGCTGAAAGAGAGGCAGAGTTGGAGGAGGGGGAAATAGTGAAATCAGACAAGTCACAAGTAAGCGAGGTTGGGCGGGCTAGCAGAGAGGCTTCTGCTGAATTATTCAAGTCTACAAGGGCACCCTCTCAGTCACCTGAAGTAACTAATGTTTCTGATGAGCTTAGAGCCAAAATTAGAGCCATGTTGATGGAAAATTTGTAA

Protein sequence

>Msa0742750

MDLEVVGRHAMLFDDDGLAAFVNSPEALVDWNSLSIDRYDVRHLLSGPIPPRLKRRTHHPLQSTVEADLDHQRYLDLPSSSPIHEEQPQEDNDSGAVNSSGYRAVAFSYENSSVSTETKDSDTDSGFRPNFPVPESLLHNLPFTGTFFPFDFMKRGRAGGIRMVEIVDSIPLVRKWDETFLHKALVLDLYDYSSIYEPPNEKLHQIISKTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKDDKTDAGSTLDKNRSQELDQTGGALSLLGSVYGNEEDEDGPTENTSDFERNAHVGAVDAATSASSGVEQAQSSSDAAKKDGSISKNQIPLKEKVPVIKRNQSISIVKTATSARTKTGVAPDSGSNGANKSQTSVPSTSKIELPVVEPPSDLKIVIDKIVEFILKNGRQFESVLAEQDRAHGRFPFLLPSNRYHTYYLKVLQTAEESKLQGKGCQKHTPADPSMSSDLPNDMDRKEKFKMTIGNLRKDGQDPTPKDSQSQTTVSIHAAAAAAILQAATRGIKRPNLEIFSKASSGNGQGLGSDGGNLSSSRSFPSSQLQGLVPHRNLNAEAHASVPVAKAIAEKVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGPFKSELPRALSVEPPSSGLSGSDAEIRNLAGKEREGSSVPFNTDNSDKSHKSEEKLSDDNSDKSHKSEEKLTVDNNERRSKRKYRSRSSKHEEEEEEDEDDEEEEENKEDTRDHKRSRKKHRSRRSSHRSRDRDADRDRNRRKHKRRDSSSNDKYSHRESRHDSSSEEGEHRHLRHQCKYESSSDEKHRSSRRHRGGSKLSDHEHRHSRKHYSSSDDEHRHSRKRYSSSDDEHRHSRKHYSSSDDEHSHRSRKTKHKSRSHAEREAELEEGEIVKSDKSQVSEVGRASREASAELFKSTRAPSQSPEVTNVSDELRAKIRAMLMENL*