AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837890 MtrunA17_Chr5g0405061 97.569 617 15 0 644 1260 23 639 0.0 1249
Msa0837890 MtrunA17_Chr5g0405071 97.504 601 15 0 1 601 1 601 0.0 1222
Msa0837890 MtrunA17_Chr3g0145201 55.439 478 194 7 72 537 207 677 3.65e-157 497
Msa0837890 MtrunA17_Chr3g0145241 54.791 407 170 4 207 601 5 409 2.18e-123 387
Msa0837890 MtrunA17_Chr5g0405031 65.236 233 71 6 60 287 33 260 6.70e-91 309
Msa0837890 MtrunA17_Chr5g0405031 40.873 504 196 11 645 1104 249 694 2.54e-81 282
Msa0837890 MtrunA17_Chr3g0109611 30.403 546 320 15 97 610 15 532 6.06e-61 218
Msa0837890 MtrunA17_Chr3g0109631 27.386 482 314 8 97 561 15 477 1.51e-51 189
Msa0837890 MtrunA17_Chr3g0109641 28.645 583 328 18 97 609 15 579 1.18e-50 194
Msa0837890 MtrunA17_Chr6g0477441 33.951 324 175 11 303 615 39 334 2.31e-35 138
Msa0837890 MtrunA17_Chr3g0109671 39.695 131 78 1 90 219 7 137 2.12e-29 114
Msa0837890 MtrunA17_Chr7g0274551 37.879 132 74 1 64 195 1 124 2.26e-28 112
Msa0837890 MtrunA17_Chr7g0274561 29.396 364 223 11 207 567 29 361 8.01e-28 118
Msa0837890 MtrunA17_Chr3g0109591 35.065 154 98 1 93 244 9 162 3.43e-26 113
Msa0837890 MtrunA17_Chr3g0109591 30.412 194 126 3 303 495 234 419 1.51e-18 90.1
Msa0837890 MtrunA17_Chr3g0145231 63.333 60 22 0 142 201 4 63 4.38e-26 102
Msa0837890 MtrunA17_Chr7g0274571 29.965 287 159 9 282 557 64 319 2.75e-24 105
Msa0837890 MtrunA17_Chr3g0145221 61.538 78 26 2 72 149 207 280 4.05e-24 105
Msa0837890 MtrunA17_Chr3g0145251 47.826 92 47 1 699 789 125 216 4.11e-19 93.2
Msa0837890 MtrunA17_Chr3g0145251 41.441 111 57 6 1152 1259 523 628 1.78e-11 68.6
Msa0837890 MtrunA17_Chr3g0109661 33.333 126 75 3 437 561 41 158 5.53e-13 68.6
Msa0837890 MtrunA17_Chr3g0109581 41.176 85 48 1 523 607 73 155 1.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837890 AT3G51120.1 49.607 764 322 15 64 800 71 798 0.0 680
Msa0837890 AT2G16485.1 44.888 802 351 17 96 816 598 1389 0.0 628
Msa0837890 AT2G16485.2 45.178 788 354 17 96 816 598 1374 0.0 622
Msa0837890 AT2G18090.2 52.778 324 143 3 86 399 68 391 3.58e-114 376
Msa0837890 AT2G18090.2 34.930 355 211 9 723 1068 448 791 3.33e-37 152
Msa0837890 AT2G18090.1 52.778 324 143 3 86 399 68 391 7.61e-114 376
Msa0837890 AT2G18090.1 33.422 377 216 9 723 1068 448 820 2.38e-36 149
Msa0837890 AT5G63700.1 27.798 554 317 15 100 598 25 550 2.34e-56 207
Msa0837890 AT5G63700.2 27.308 520 301 13 100 567 25 519 5.20e-55 201
Msa0837890 AT5G08430.2 33.670 297 169 9 303 598 32 301 1.05e-32 133
Msa0837890 AT5G08430.1 32.997 297 171 8 303 598 32 301 1.69e-32 134
Msa0837890 AT5G23480.3 26.230 305 183 8 303 598 27 298 7.40e-21 97.8
Msa0837890 AT5G23480.2 26.230 305 183 8 303 598 27 298 7.40e-21 97.8
Msa0837890 AT5G23480.5 26.230 305 183 8 303 598 27 298 7.40e-21 97.8
Msa0837890 AT5G23480.4 26.230 305 183 8 303 598 27 298 7.40e-21 97.8
Msa0837890 AT5G23480.6 26.230 305 183 8 303 598 27 298 7.40e-21 97.8
Msa0837890 AT5G23480.1 26.117 291 169 9 303 584 27 280 1.89e-18 90.1

Find 321 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAATAAAATGAAAATT+TGG 0.133311 5_4:+11999985 None:intergenic
CCAGGTTAAATTACAATAAT+TGG 0.138948 5_4:+12000137 None:intergenic
AATACTTCCACCCATGATTT+TGG 0.149348 5_4:-12000223 Msa0837890:exon
ACCCCTGCAGAAAATAATTT+TGG 0.173795 5_4:-12004091 Msa0837890:CDS
TTGTTAACTGATGCACTTAA+TGG 0.202378 5_4:-12001655 Msa0837890:CDS
CTCATACAATGAATCCAAAT+TGG 0.204917 5_4:+12002217 None:intergenic
AGAATCACACCAACAAATTA+AGG 0.216582 5_4:-12001345 Msa0837890:CDS
GTTACAGTCGCCGGTGTTTC+CGG 0.218973 5_4:+12006582 None:intergenic
GGAGCTGTTTGTGATAATTT+TGG 0.228997 5_4:+12006785 None:intergenic
CATACTCCAGCAAGAGATTC+TGG 0.236810 5_4:+12004257 None:intergenic
GTTGCTGAACCTTACAAAAT+TGG 0.246056 5_4:-12003652 Msa0837890:CDS
TGGAAGAAGTATTTACATTA+TGG 0.249164 5_4:+12001170 None:intergenic
TGTACACTCTGACCCCAATT+TGG 0.264861 5_4:-12002231 Msa0837890:CDS
TACCATCTTAAAGATGAAAA+AGG 0.271358 5_4:-12004469 Msa0837890:CDS
AATTAGTACTGGTATGTTCT+TGG 0.273162 5_4:-11999956 Msa0837890:three_prime_UTR
ATCAATAATCATGAATAATT+AGG 0.282662 5_4:+12006658 None:intergenic
CTGTAGTAACTCCAAGCTTT+GGG 0.292547 5_4:-12000466 Msa0837890:CDS
TGAATCAGTTTCAGATCTTT+TGG 0.293661 5_4:-12001002 Msa0837890:CDS
ACCCACAGTTTAGCATATTT+AGG 0.300163 5_4:+12002817 None:intergenic
TCAAATGCGGCCAATGCTAA+TGG 0.306495 5_4:+12000197 None:intergenic
ATGATCCTCCCTTAATTTGT+TGG 0.309490 5_4:+12001336 None:intergenic
AGTAAGCATGTATTCTCAAT+TGG 0.319348 5_4:+12001967 None:intergenic
TACATGTATAGCACATATAA+TGG 0.327124 5_4:+12004956 None:intergenic
GATCACTTCCGTATCTTGTT+TGG 0.332764 5_4:+12000438 None:intergenic
TTGCGTCAAAGTATAAAGTA+TGG 0.336240 5_4:-12003411 Msa0837890:CDS
TCTAGACTAGTAAATTTGTT+TGG 0.338628 5_4:-12004181 Msa0837890:CDS
GTTTCTGTTAGAGGAAATAA+AGG 0.339229 5_4:-12004892 Msa0837890:CDS
CAAGAATAAAATGAAAATTT+GGG 0.340376 5_4:+11999986 None:intergenic
ACTACGTGGCAGGCTATTAT+AGG 0.342752 5_4:-12001043 Msa0837890:CDS
CTTCATAACCTCACTGTTCT+CGG 0.347536 5_4:+12006404 None:intergenic
TGATAGATCATGGCATTATC+AGG 0.347539 5_4:-12001800 Msa0837890:CDS
CTCTGATCTGTTCTATGATT+CGG 0.347556 5_4:+12001497 None:intergenic
CAAGACACCATCCCAAATTC+TGG 0.350471 5_4:+12002035 None:intergenic
TAAGAGATGCACAAGTAAAA+AGG 0.350827 5_4:-12003990 Msa0837890:CDS
GAACAGTGCCCAGGGAAATA+AGG 0.351756 5_4:-12004830 Msa0837890:CDS
ATGGTGTCTTGAATGGTGTT+GGG 0.358098 5_4:-12002023 Msa0837890:CDS
CATTTCCATTTCCATGTGCC+AGG 0.360845 5_4:-12006741 Msa0837890:five_prime_UTR
ACCAGGAAAACCCCGATCTC+TGG 0.361017 5_4:+12000403 None:intergenic
TCATCAATAGGAGTTTCGTT+TGG 0.363221 5_4:+12001928 None:intergenic
AAGAACATACCAGTACTAAT+TGG 0.363265 5_4:+11999958 None:intergenic
AGGGAACCAGGTTTAGTTAG+AGG 0.373757 5_4:-12000374 Msa0837890:CDS
TCATACAATGAATCCAAATT+GGG 0.377658 5_4:+12002218 None:intergenic
TACAGCTGCAACATAGAAAA+AGG 0.377698 5_4:+12001754 None:intergenic
CAAAGTACCGCAATTCCATT+TGG 0.377811 5_4:+12005983 None:intergenic
TCCCTCCAGATCTCAAAGTA+TGG 0.380048 5_4:-12001708 Msa0837890:CDS
ATTGCATGCTGGAGGGGAAG+GGG 0.380816 5_4:+12001069 None:intergenic
CCGCCATTTGGTGTTGGTAA+TGG 0.381731 5_4:-12000329 Msa0837890:CDS
ATTGAGCGCTGCTGCTCCTA+TGG 0.384448 5_4:-12004512 Msa0837890:CDS
TGTTAACTGATGCACTTAAT+GGG 0.385550 5_4:-12001654 Msa0837890:CDS
GATCCATTCCTCCCCATTCC+AGG 0.385876 5_4:+12000564 None:intergenic
TCCCAAATTCTGGAGAAAAT+AGG 0.386571 5_4:+12002045 None:intergenic
CATGACTCAAACAGGACTTC+TGG 0.386601 5_4:-12001280 Msa0837890:CDS
TCTGTAGTAACTCCAAGCTT+TGG 0.386688 5_4:-12000467 Msa0837890:CDS
CATCAATAGGAGTTTCGTTT+GGG 0.387224 5_4:+12001929 None:intergenic
GACAGTTCCGGCGACTGTTC+CGG 0.388513 5_4:-12006556 Msa0837890:CDS
GATGGTGTCTTGAATGGTGT+TGG 0.389454 5_4:-12002024 Msa0837890:CDS
ATTGCGGCTTAATAATCTTC+GGG 0.390772 5_4:-12002895 Msa0837890:CDS
TCTTCCTTCTTGATCTGCTT+CGG 0.391127 5_4:+12006333 None:intergenic
TTTACAAACTCGCTGCCCTT+TGG 0.394552 5_4:+12000286 None:intergenic
TATAGACTTGTCCAAGTTGT+AGG 0.396375 5_4:-12003779 Msa0837890:intron
ATATTTAGGAAAGAAGTAAA+TGG 0.401021 5_4:+12002831 None:intergenic
TTACAAACTCGCTGCCCTTT+GGG 0.401113 5_4:+12000287 None:intergenic
CATTGCATGCTGGAGGGGAA+GGG 0.401547 5_4:+12001068 None:intergenic
TCAAGTAACCAGTGGGAGTC+AGG 0.405251 5_4:-12000674 Msa0837890:CDS
CCTGGTCATGGTAGGGAACC+AGG 0.405604 5_4:-12000386 Msa0837890:CDS
GATAGACGAGATTTCGAATC+AGG 0.407835 5_4:-12003569 Msa0837890:CDS
TCATCTCCACTTATCTCTAC+AGG 0.407890 5_4:-12001853 Msa0837890:CDS
CTCATTCAAATTCTCAGAAA+AGG 0.410353 5_4:+12001366 None:intergenic
CTTTAAGATGGTAAAGTTTG+TGG 0.413487 5_4:+12004479 None:intergenic
ACGAAATGCAAACACGAGTT+GGG 0.415413 5_4:-12000540 Msa0837890:CDS
GGCAATCTTCGGCACAAAGC+TGG 0.416012 5_4:-12001198 Msa0837890:CDS
GACTGTTCCGGTTGCCGTTA+CGG 0.416243 5_4:-12006544 Msa0837890:CDS
AATTGCGGCTTAATAATCTT+CGG 0.416863 5_4:-12002896 Msa0837890:CDS
ATTCATCTTTACCATTAGAC+TGG 0.419959 5_4:+12001449 None:intergenic
AACAGCCTATTGCTCTCTTT+AGG 0.421297 5_4:-12001601 Msa0837890:CDS
GCATTGCATGCTGGAGGGGA+AGG 0.421721 5_4:+12001067 None:intergenic
GAGGCAGAGCTGCGTGGAAC+AGG 0.422436 5_4:-12000355 Msa0837890:CDS
GCGGTCTCCGTAACGGCAAC+CGG 0.427210 5_4:+12006537 None:intergenic
AAAACCCTGGCACATGGAAA+TGG 0.427825 5_4:+12006736 None:intergenic
TGATGTCCAGAATCTCTTGC+TGG 0.429046 5_4:-12004263 Msa0837890:CDS
TGGTGTCTTGAATGGTGTTG+GGG 0.429149 5_4:-12002022 Msa0837890:CDS
TTCGGCGGAGGAGCTACTTT+CGG 0.429190 5_4:+12006351 None:intergenic
CTATGTTGCAGCTGTATAAG+TGG 0.431594 5_4:-12001747 Msa0837890:CDS
CTGGCACATGGAAATGGAAA+TGG 0.432868 5_4:+12006742 None:intergenic
CAAATGCGGCCAATGCTAAT+GGG 0.434386 5_4:+12000198 None:intergenic
TTTCCAGCCACTGCAACATT+GGG 0.434638 5_4:-12000632 Msa0837890:CDS
TGGCTCCTAAAGAGAGCAAT+AGG 0.435384 5_4:+12001596 None:intergenic
AAGAACATCACCACTTAAGC+TGG 0.437573 5_4:-12001110 Msa0837890:CDS
TGGCATTATCAGGATCCATC+TGG 0.437750 5_4:-12001790 Msa0837890:CDS
ATGGAAATCATGACTCAAAC+AGG 0.438689 5_4:-12001288 Msa0837890:CDS
TGGAACAGGCAACCGCCATT+TGG 0.439002 5_4:-12000341 Msa0837890:CDS
GAAAGTAGAGAGAGAATATG+TGG 0.439258 5_4:+12006854 None:intergenic
GTAAGCATGTATTCTCAATT+GGG 0.439319 5_4:+12001968 None:intergenic
GACTGTAACGGAGACAGTTC+CGG 0.439619 5_4:-12006568 Msa0837890:CDS
TTATAAGAAAGTGGGGTTCA+AGG 0.443433 5_4:+12004122 None:intergenic
GTAGACACCACTTGGAGACT+TGG 0.445086 5_4:-12000602 Msa0837890:CDS
AATGGAATCGCTTGGTGGCT+TGG 0.445389 5_4:-12000966 Msa0837890:CDS
ATCCTCCATACTTTGAGATC+TGG 0.448703 5_4:+12001703 None:intergenic
ACTGATTCATCAAAATCATC+TGG 0.450681 5_4:+12001016 None:intergenic
TTGGGGTCAGAGTGTACATC+TGG 0.451024 5_4:+12002236 None:intergenic
ACATGTATAGCACATATAAT+GGG 0.452039 5_4:+12004957 None:intergenic
CGATGTGGTATCAAAGCAAT+TGG 0.453011 5_4:+12001150 None:intergenic
ACATCAGCACTATCATCAAT+AGG 0.453370 5_4:+12001916 None:intergenic
AATGAGCAATCACATAAAAC+AGG 0.454988 5_4:+12000062 None:intergenic
GGAAAGTACACACCTGGAAT+GGG 0.456457 5_4:-12000576 Msa0837890:CDS
GATACTTCGACCCAGTCTAA+TGG 0.457443 5_4:-12001460 Msa0837890:CDS
ATGCCCAATGTTGCAGTGGC+TGG 0.457866 5_4:+12000629 None:intergenic
TTTAAGATGGTAAAGTTTGT+GGG 0.462817 5_4:+12004480 None:intergenic
TTGCATGCTGGAGGGGAAGG+GGG 0.466493 5_4:+12001070 None:intergenic
CTACTTGCGGCGAAGTCTGA+TGG 0.467567 5_4:-12003897 Msa0837890:CDS
GTTTGCTTCATTTGCTTCGA+CGG 0.470458 5_4:-12006303 Msa0837890:CDS
ATACCATTTCCTTATTTCCC+TGG 0.470501 5_4:+12004821 None:intergenic
GAAGAGATCTCTATCAAGCT+AGG 0.470692 5_4:+12006827 None:intergenic
TGGAAAGTACACACCTGGAA+TGG 0.470741 5_4:-12000577 Msa0837890:CDS
TAGGAGCAGCAGCGCTCAAT+GGG 0.471296 5_4:+12004515 None:intergenic
GATCCATCTGGGAAGGTTCA+AGG 0.471913 5_4:-12001778 Msa0837890:CDS
CTCAATTGGGTCACTGGCAG+TGG 0.472098 5_4:+12001981 None:intergenic
GTTTGGCTATCCCCAAAGCT+TGG 0.472616 5_4:+12000455 None:intergenic
AGGATTCACGAGAAGGTTGT+TGG 0.472648 5_4:-12003851 Msa0837890:CDS
CTTGTGTTACCAATTAGTAC+TGG 0.477434 5_4:-11999967 Msa0837890:three_prime_UTR
CAATTAGAGATTTCTGTTGA+GGG 0.477581 5_4:+12004212 None:intergenic
TACCATTTCCTTATTTCCCT+GGG 0.478038 5_4:+12004822 None:intergenic
CACCACTTGGAGACTTGGAT+TGG 0.478908 5_4:-12000597 Msa0837890:CDS
AAGAAGCCTAAGGGACCTTC+AGG 0.481000 5_4:-12004394 Msa0837890:CDS
ATAGGAGCAGCAGCGCTCAA+TGG 0.481704 5_4:+12004514 None:intergenic
ATTAGTGATGCTGTTGCAAA+TGG 0.481762 5_4:-12004061 Msa0837890:CDS
CGTATAGACCTCTGCCCAAA+GGG 0.484540 5_4:-12000301 Msa0837890:CDS
ACTTTCGGAGTTCCTTTCGC+TGG 0.487817 5_4:+12006366 None:intergenic
ATTTGGGATGGTGTCTTGAA+TGG 0.488863 5_4:-12002030 Msa0837890:CDS
GCTAATGGGATCCAAAATCA+TGG 0.489646 5_4:+12000212 None:intergenic
CCAATTATTGTAATTTAACC+TGG 0.490055 5_4:-12000137 Msa0837890:three_prime_UTR
TTGTGGGAAGTTTGACCCAT+AGG 0.491185 5_4:+12004496 None:intergenic
ATGCAATGCAACTACGTGGC+AGG 0.491186 5_4:-12001053 Msa0837890:CDS
TGTATTCTCAATTGGGTCAC+TGG 0.492209 5_4:+12001975 None:intergenic
CTATCGATATGACCTCCTTC+CGG 0.492961 5_4:+12003587 None:intergenic
GTCTCGTTCTCTGCGATCGC+CGG 0.493648 5_4:-12006275 Msa0837890:intron
TTCTTGATCTGCTTCGGCGG+AGG 0.494190 5_4:+12006339 None:intergenic
ACAATTAGAGATTTCTGTTG+AGG 0.494879 5_4:+12004211 None:intergenic
ATGAAAATTTGGGGTCAGAA+AGG 0.495655 5_4:+11999996 None:intergenic
GATGAATCCGTTAGGAGCAA+TGG 0.495944 5_4:-12001433 Msa0837890:CDS
AACGAAATGCAAACACGAGT+TGG 0.499133 5_4:-12000541 Msa0837890:CDS
GAATCACACCAACAAATTAA+GGG 0.500251 5_4:-12001344 Msa0837890:CDS
TTTAGGAGCCAATGTTGCAT+TGG 0.503048 5_4:-12001584 Msa0837890:CDS
ATTTCGATGACAAGAGCAGC+TGG 0.503366 5_4:-12004618 Msa0837890:CDS
CACGCCGGATGATACGCTTT+AGG 0.504465 5_4:+12006041 None:intergenic
ATTTATGGAACAATCAAAGC+CGG 0.504469 5_4:-12006601 Msa0837890:exon
TGCCCAGGGAAATAAGGAAA+TGG 0.504537 5_4:-12004824 Msa0837890:intron
ACTCGCTGCCCTTTGGGCAG+AGG 0.505416 5_4:+12000293 None:intergenic
ACATGGAAATGGAAATGGAC+TGG 0.506282 5_4:+12006747 None:intergenic
CCTCCATTACCAACACCAAA+TGG 0.507490 5_4:+12000326 None:intergenic
TTTATGAAAGTGGGTACTGT+AGG 0.507920 5_4:-12000262 Msa0837890:CDS
TTGAGCGCTGCTGCTCCTAT+GGG 0.508128 5_4:-12004511 Msa0837890:CDS
AACAAATTAAGGGAGGATCA+TGG 0.508647 5_4:-12001334 Msa0837890:CDS
ACAAATTAAGGGAGGATCAT+GGG 0.508655 5_4:-12001333 Msa0837890:CDS
CATCTCCACTTATCTCTACA+GGG 0.508658 5_4:-12001852 Msa0837890:CDS
ATCCGTAACATATCTGTAGT+TGG 0.508677 5_4:-12000166 Msa0837890:three_prime_UTR
TCTTCCGTTCAAAAGCCAAA+TGG 0.509901 5_4:-12005998 Msa0837890:CDS
GAGAGACGGCGGTTGTTGTA+CGG 0.511402 5_4:-12006454 Msa0837890:CDS
TTTGTCATCCAATGCAACAT+TGG 0.511832 5_4:+12001576 None:intergenic
AGGAAAGAAGTAAATGGTAA+AGG 0.514336 5_4:+12002837 None:intergenic
TTGTTTGGAAAAGCTCGTCT+TGG 0.514641 5_4:-12004166 Msa0837890:CDS
CCATTTGGTGTTGGTAATGG+AGG 0.516121 5_4:-12000326 Msa0837890:CDS
AAAGTGGGTACTGTAGGAAA+GGG 0.516641 5_4:-12000256 Msa0837890:CDS
AATCGTGAGTGAGCAATAGT+AGG 0.518532 5_4:-12006931 Msa0837890:five_prime_UTR
TTTCCGAGCCTGACTCCCAC+TGG 0.518669 5_4:+12000666 None:intergenic
GACACTTGACTAGTACTGCC+AGG 0.521563 5_4:+12000119 None:intergenic
TACTATTGCTCACTCACGAT+TGG 0.522522 5_4:+12006933 None:intergenic
GCTGATTGAGAACAGTGCCC+AGG 0.522778 5_4:-12004839 Msa0837890:CDS
AGACAACTCAGGGCAATCTT+CGG 0.526028 5_4:-12001209 Msa0837890:CDS
TCATTCATAAAATCATCAAA+TGG 0.527514 5_4:+12001820 None:intergenic
AGCCAACTACAGATATGTTA+CGG 0.527767 5_4:+12000164 None:intergenic
TCCTTCTTGATCTGCTTCGG+CGG 0.529690 5_4:+12006336 None:intergenic
AAATTCTCAGAAAAGGCAGT+TGG 0.530404 5_4:+12001373 None:intergenic
CTCCGCCGCGGTCTCCGTAA+CGG 0.531301 5_4:+12006530 None:intergenic
ATGACAGCGAGAACTACTTT+CGG 0.532438 5_4:+12006429 None:intergenic
CATGGAAATGGAAATGGACT+GGG 0.533031 5_4:+12006748 None:intergenic
ACACCTGGAATGGGGAGGAA+TGG 0.534911 5_4:-12000567 Msa0837890:CDS
CCAGGAAAACCCCGATCTCT+GGG 0.536704 5_4:+12000404 None:intergenic
TGTACGTATTCTTTGTGCAA+GGG 0.539143 5_4:-12004937 Msa0837890:CDS
ATGGTAAAGATGAATCCGTT+AGG 0.539201 5_4:-12001441 Msa0837890:CDS
AAATCAAATCCCAGCTTAAG+TGG 0.540274 5_4:+12001100 None:intergenic
GAAAGTGGGTACTGTAGGAA+AGG 0.542249 5_4:-12000257 Msa0837890:CDS
TTTGGCAGAAGTGGAGGCAA+TGG 0.543632 5_4:-12000984 Msa0837890:CDS
AAGAGATCTCTATCAAGCTA+GGG 0.544078 5_4:+12006828 None:intergenic
CTCCATACTTTGAGATCTGG+AGG 0.545239 5_4:+12001706 None:intergenic
CTTAGTCCAATGCTTGATGC+AGG 0.546756 5_4:-12000866 Msa0837890:CDS
TGCTTCATTTGCTTCGACGG+TGG 0.548926 5_4:-12006300 Msa0837890:CDS
GGACCTTCAGGCGGTGACAC+GGG 0.549683 5_4:-12004382 Msa0837890:CDS
GACTGGGTTCAGATGTAAGA+AGG 0.551185 5_4:+12006764 None:intergenic
GTGCAAGAGATGGGCATCAA+AGG 0.552347 5_4:-12004344 Msa0837890:CDS
TCTGGTGGTCAGAGTAATAG+TGG 0.552718 5_4:-12001262 Msa0837890:CDS
GGGGATAGCCAAACAAGATA+CGG 0.553183 5_4:-12000446 Msa0837890:CDS
TTGACATCTGCTTGTTGTAA+CGG 0.553275 5_4:+12000776 None:intergenic
TCATGGGTGGAAGTATTCAC+AGG 0.553606 5_4:+12000229 None:intergenic
TTCATCTTTACCATTAGACT+GGG 0.555707 5_4:+12001450 None:intergenic
GACTGTTGAAGTTCCGACGA+AGG 0.556762 5_4:-12006502 Msa0837890:CDS
CACGTAGTTGCATTGCATGC+TGG 0.557373 5_4:+12001058 None:intergenic
ACATCGGAAACTGCCTTCGT+CGG 0.558062 5_4:+12006489 None:intergenic
GATGCCCATCTCTTGCACTC+AGG 0.561219 5_4:+12004349 None:intergenic
GGCATTATCAGGATCCATCT+GGG 0.561353 5_4:-12001789 Msa0837890:CDS
GGTGTCTTGAATGGTGTTGG+GGG 0.561455 5_4:-12002021 Msa0837890:CDS
TATGAGTCTGATGAAGATGC+TGG 0.561952 5_4:-12002200 Msa0837890:CDS
TTTAAATTTAAACCGGAAGG+AGG 0.562088 5_4:-12003599 Msa0837890:CDS
ATGTACGTATTCTTTGTGCA+AGG 0.562282 5_4:-12004938 Msa0837890:CDS
AAGGTCACATACCTACAACT+TGG 0.562288 5_4:+12003768 None:intergenic
GTGGAGGCAATGGAATCGCT+TGG 0.564327 5_4:-12000974 Msa0837890:CDS
ATTTCCATTTCCATGTGCCA+GGG 0.564509 5_4:-12006740 Msa0837890:five_prime_UTR
GGGACCTTCAGGCGGTGACA+CGG 0.565507 5_4:-12004383 Msa0837890:CDS
CTACGTTTCATGATTGAAGT+GGG 0.566724 5_4:+12000938 None:intergenic
AGTTGCATTGCATGCTGGAG+GGG 0.567218 5_4:+12001063 None:intergenic
AAGAAAGCAGTCAGGATGGT+GGG 0.568241 5_4:-12001555 Msa0837890:CDS
AGGCAACCGCCATTTGGTGT+TGG 0.569763 5_4:-12000335 Msa0837890:CDS
TAACCAGTGGGAGTCAGGCT+CGG 0.570435 5_4:-12000669 Msa0837890:CDS
CGGGATAGAGCAAGTGAGAA+GGG 0.572104 5_4:-12002876 Msa0837890:CDS
GGATGACAAAGAAAGCAGTC+AGG 0.572470 5_4:-12001563 Msa0837890:CDS
ACAATCAAAGCCGGAAACAC+CGG 0.573399 5_4:-12006592 Msa0837890:CDS
TCGTATAGACCTCTGCCCAA+AGG 0.573598 5_4:-12000302 Msa0837890:CDS
TATTGGAAGCTGAGAAATTG+CGG 0.573970 5_4:-12002911 Msa0837890:CDS
TGCGTCAAAGTATAAAGTAT+GGG 0.574180 5_4:-12003410 Msa0837890:CDS
GGAAACACCGGCGACTGTAA+CGG 0.577284 5_4:-12006580 Msa0837890:CDS
TTCCTAAATATGCTAAACTG+TGG 0.578015 5_4:-12002819 Msa0837890:CDS
GCATGACTGTAGACACCACT+TGG 0.578287 5_4:-12000610 Msa0837890:CDS
ATTTGATTCTATATCTACAC+AGG 0.578615 5_4:+12004429 None:intergenic
GCAATCCCTGTAGAGATAAG+TGG 0.578905 5_4:+12001847 None:intergenic
GCTCTGCCTCTAACTAAACC+TGG 0.580099 5_4:+12000368 None:intergenic
ATGCCATCCATTGCTCCTAA+CGG 0.581344 5_4:+12001426 None:intergenic
TCACCGCCTGAAGGTCCCTT+AGG 0.581612 5_4:+12004388 None:intergenic
CTGATTGAGAACAGTGCCCA+GGG 0.582372 5_4:-12004838 Msa0837890:CDS
GTCTGACTGATGATAGTGAA+AGG 0.583848 5_4:-12003871 Msa0837890:CDS
ACTACGTTTCATGATTGAAG+TGG 0.584103 5_4:+12000937 None:intergenic
ATCTCAATCTACAGCAGCAG+AGG 0.584635 5_4:-12000801 Msa0837890:CDS
GCAAACACGAGTTGGGGAGT+AGG 0.584654 5_4:-12000533 Msa0837890:CDS
CTTTGCCTGAGTGCAAGAGA+TGG 0.584656 5_4:-12004354 Msa0837890:CDS
TTGTCCTAAAGCGTATCATC+CGG 0.585341 5_4:-12006045 Msa0837890:CDS
ACGGCAACCGGAACAGTCGC+CGG 0.585731 5_4:+12006549 None:intergenic
AGAGGAAATAAAGGTTTGTG+TGG 0.585800 5_4:-12004883 Msa0837890:CDS
TAGTGAAAGGATTCACGAGA+AGG 0.590332 5_4:-12003858 Msa0837890:CDS
GGTCCTTGAACCTTCCCAGA+TGG 0.590343 5_4:+12001775 None:intergenic
ACATTAACTTGATCTACTTG+CGG 0.590461 5_4:-12003910 Msa0837890:CDS
ACTGTCTCCGTTACAGTCGC+CGG 0.592957 5_4:+12006573 None:intergenic
TCCTAAATATGCTAAACTGT+GGG 0.593025 5_4:-12002818 Msa0837890:intron
TCGGGATAGAGCAAGTGAGA+AGG 0.596969 5_4:-12002877 Msa0837890:CDS
AATAGGCTGTTGTTCCGCAA+TGG 0.597034 5_4:+12001613 None:intergenic
AAAGTGAAAACCCTGGCACA+TGG 0.597186 5_4:+12006730 None:intergenic
CCTGGTTCCCTACCATGACC+AGG 0.598011 5_4:+12000386 None:intergenic
CAGATAGTGAAGACAACTCA+GGG 0.598737 5_4:-12001219 Msa0837890:CDS
GTACGTATTCTTTGTGCAAG+GGG 0.599465 5_4:-12004936 Msa0837890:CDS
AGAAGTGTCTAGTGTTGCAG+TGG 0.601945 5_4:-12001881 Msa0837890:CDS
CTAATGGGATCCAAAATCAT+GGG 0.603693 5_4:+12000213 None:intergenic
CTCAGAAACATGAGCCGATG+TGG 0.603967 5_4:+12001135 None:intergenic
TTTGCCTGAGTGCAAGAGAT+GGG 0.605036 5_4:-12004353 Msa0837890:CDS
CTGTATAAGTGGAATGCAAG+TGG 0.605595 5_4:-12001736 Msa0837890:CDS
ACAACTCGAACTATTTGTTG+AGG 0.605762 5_4:+11999913 None:intergenic
TAGTTGCATTGCATGCTGGA+GGG 0.605974 5_4:+12001062 None:intergenic
GACAAAGAAAGCAGTCAGGA+TGG 0.607040 5_4:-12001559 Msa0837890:CDS
TGGATTGGAAAGTACACACC+TGG 0.609215 5_4:-12000582 Msa0837890:CDS
GAGGCAATGGAATCGCTTGG+TGG 0.610924 5_4:-12000971 Msa0837890:CDS
AATCGAGTTGAGTTTGCGTG+AGG 0.611343 5_4:+12006699 None:intergenic
TGTAGTAACTCCAAGCTTTG+GGG 0.611671 5_4:-12000465 Msa0837890:CDS
TAGAAGTGTGTACATGTGAC+TGG 0.616630 5_4:+12001401 None:intergenic
GTCAACTTTAGAATTTCTCG+AGG 0.616845 5_4:+12000721 None:intergenic
AAAGAAAGCAGTCAGGATGG+TGG 0.617264 5_4:-12001556 Msa0837890:CDS
CGAAATGCAAACACGAGTTG+GGG 0.617307 5_4:-12000539 Msa0837890:CDS
TCAGATAGTGAAGACAACTC+AGG 0.618147 5_4:-12001220 Msa0837890:CDS
AAGCGCGGTCGTCCAGCGAA+AGG 0.620518 5_4:-12006378 Msa0837890:CDS
CAATTGCTTTGATACCACAT+CGG 0.620609 5_4:-12001149 Msa0837890:CDS
CGTAGTGAGGAATTGACTGA+TGG 0.621062 5_4:-12000920 Msa0837890:CDS
ATCGAGTTGAGTTTGCGTGA+GGG 0.621625 5_4:+12006700 None:intergenic
AGAACATCACCACTTAAGCT+GGG 0.624830 5_4:-12001109 Msa0837890:CDS
GACTCAAACAGGACTTCTGG+TGG 0.627249 5_4:-12001277 Msa0837890:CDS
GAGAAATTCTAAAGTTGACG+TGG 0.629269 5_4:-12000717 Msa0837890:CDS
GTGAACATGACGGAGAGAGA+CGG 0.631033 5_4:-12006468 Msa0837890:CDS
AACAGTCTTCGTCTCCGCCG+CGG 0.631437 5_4:+12006518 None:intergenic
CTCCAGATCTCAAAGTATGG+AGG 0.636299 5_4:-12001705 Msa0837890:CDS
TTATCAGGATCCATCTGGGA+AGG 0.637004 5_4:-12001785 Msa0837890:CDS
AAGAATAAAATGAAAATTTG+GGG 0.637103 5_4:+11999987 None:intergenic
TTTCGATGACAAGAGCAGCT+GGG 0.637251 5_4:-12004617 Msa0837890:CDS
AGAAATTCTAAAGTTGACGT+GGG 0.639228 5_4:-12000716 Msa0837890:CDS
ATGGGATCCAAAATCATGGG+TGG 0.640005 5_4:+12000216 None:intergenic
TCCGCCGAAGCAGATCAAGA+AGG 0.640783 5_4:-12006337 Msa0837890:CDS
GTAGTTGCATTGCATGCTGG+AGG 0.641336 5_4:+12001061 None:intergenic
TCAAAAGCCAAATGGAATTG+CGG 0.644100 5_4:-12005990 Msa0837890:intron
TTCAATCATGAAACGTAGTG+AGG 0.644665 5_4:-12000933 Msa0837890:CDS
ACACCCGTGTCACCGCCTGA+AGG 0.645434 5_4:+12004379 None:intergenic
TCATCATCAAAGAATATCAG+AGG 0.650447 5_4:-12000750 Msa0837890:CDS
ATGTGTTTCAAGTAACCAGT+GGG 0.650974 5_4:-12000681 Msa0837890:CDS
GAGTCAGATGGCAATAAACA+AGG 0.652111 5_4:-12002176 Msa0837890:intron
TCCATACTTTGAGATCTGGA+GGG 0.653191 5_4:+12001707 None:intergenic
TAGTAACTGTAAATCACATG+TGG 0.653829 5_4:+12000823 None:intergenic
AATCCGTTAGGAGCAATGGA+TGG 0.654526 5_4:-12001429 Msa0837890:CDS
TAGTTAGAGGCAGAGCTGCG+TGG 0.657531 5_4:-12000361 Msa0837890:CDS
GAAGATGCTGGAGAGTCAGA+TGG 0.658657 5_4:-12002188 Msa0837890:CDS
GAAAGTACACACCTGGAATG+GGG 0.660607 5_4:-12000575 Msa0837890:CDS
GTGCGGATAAGAATCTCTAG+TGG 0.660680 5_4:-12003821 Msa0837890:CDS
TAATTGTGCAGGTACAAGCA+AGG 0.661666 5_4:-12003674 Msa0837890:intron
TCGTCTCGCTTGACACACGC+CGG 0.666888 5_4:+12006026 None:intergenic
TTCCAATCCAAGTCTCCAAG+TGG 0.667946 5_4:+12000595 None:intergenic
TGATGCTGTTGCAAATGGAA+AGG 0.670038 5_4:-12004056 Msa0837890:CDS
AAGCCTAAGGGACCTTCAGG+CGG 0.671021 5_4:-12004391 Msa0837890:CDS
TGCTGTTGCAAATGGAAAGG+AGG 0.671749 5_4:-12004053 Msa0837890:CDS
CATACAATGAATCCAAATTG+GGG 0.672918 5_4:+12002219 None:intergenic
AGTCATGCCCAATGTTGCAG+TGG 0.673187 5_4:+12000625 None:intergenic
TATGTGTTTCAAGTAACCAG+TGG 0.677699 5_4:-12000682 Msa0837890:CDS
GCTTTCAAAGAGATTGACTG+TGG 0.679086 5_4:-12003388 Msa0837890:intron
TGCCGTTACGGAGACCGCGG+CGG 0.679201 5_4:-12006532 Msa0837890:CDS
GGTTGCCGTTACGGAGACCG+CGG 0.679647 5_4:-12006535 Msa0837890:CDS
CACTCACGATTGGTTCAATG+TGG 0.681230 5_4:+12006943 None:intergenic
AGTTTCCGATGTGAACATGA+CGG 0.681488 5_4:-12006478 Msa0837890:CDS
TCTCTCCGTCATGTTCACAT+CGG 0.681784 5_4:+12006473 None:intergenic
AAGTGGGTACTGTAGGAAAG+GGG 0.681811 5_4:-12000255 Msa0837890:CDS
TCACACCAACAAATTAAGGG+AGG 0.689313 5_4:-12001341 Msa0837890:CDS
AAAGCAGTCAGGATGGTGGG+AGG 0.690722 5_4:-12001552 Msa0837890:CDS
AGTACACACCTGGAATGGGG+AGG 0.705466 5_4:-12000572 Msa0837890:CDS
CAGCATGCAATGCAACTACG+TGG 0.709858 5_4:-12001057 Msa0837890:CDS
CCATTACCAACACCAAATGG+CGG 0.710852 5_4:+12000329 None:intergenic
TTCGAATCAGGAGTTCTCCG+AGG 0.712977 5_4:-12003557 Msa0837890:intron
GAGTTGGGGAGTAGGACATG+CGG 0.719528 5_4:-12000525 Msa0837890:CDS
AACATGACGGAGAGAGACGG+CGG 0.721172 5_4:-12006465 Msa0837890:CDS
GAGGTTATGAAGAAGAAGCG+CGG 0.742865 5_4:-12006393 Msa0837890:CDS
TGTCATCGCCGAGAACAGTG+AGG 0.750277 5_4:-12006412 Msa0837890:CDS
AAACTGAAAAGTGAAAACCC+TGG 0.775431 5_4:+12006723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAATTTTAAATTTAAAC+CGG - chr5_4:12003283-12003302 Msa0837890:CDS 10.0%
!! ATCAATAATCATGAATAATT+AGG + chr5_4:12000234-12000253 None:intergenic 15.0%
!!! TTTGAATATACATGATTTTT+AGG + chr5_4:12001475-12001494 None:intergenic 15.0%
!! ATGTATATTCAAACATAATT+TGG - chr5_4:12001482-12001501 Msa0837890:CDS 15.0%
!!! ATTTTCTTTTATAAGAAAGT+GGG + chr5_4:12002778-12002797 None:intergenic 15.0%
!!! TATTTTCTTTTATAAGAAAG+TGG + chr5_4:12002779-12002798 None:intergenic 15.0%
!! AAACTTTATGTTTCATTTAT+TGG + chr5_4:12004163-12004182 None:intergenic 15.0%
!!! CAATTTTTTAACAAAGAATT+AGG - chr5_4:12004434-12004453 Msa0837890:CDS 15.0%
!!! TTTGTAAATTTTATGAAAGT+GGG - chr5_4:12006618-12006637 Msa0837890:exon 15.0%
!! AAGAATAAAATGAAAATTTG+GGG + chr5_4:12006905-12006924 None:intergenic 15.0%
!! CAAGAATAAAATGAAAATTT+GGG + chr5_4:12006906-12006925 None:intergenic 15.0%
!! ACAAGAATAAAATGAAAATT+TGG + chr5_4:12006907-12006926 None:intergenic 15.0%
!!! GATAATTTTGGTAATTTTGT+GGG + chr5_4:12000095-12000114 None:intergenic 20.0%
!!! TGATAATTTTGGTAATTTTG+TGG + chr5_4:12000096-12000115 None:intergenic 20.0%
!! AATAAAAAAATCGAATCGAA+TGG + chr5_4:12000271-12000290 None:intergenic 20.0%
!!! CGATTCGATTTTTTTATTTA+TGG - chr5_4:12000273-12000292 Msa0837890:CDS 20.0%
!!! AGAATGGAATAATTTTGAAT+TGG - chr5_4:12000658-12000677 Msa0837890:CDS 20.0%
!! TTATAGATTCTATCTTAGAT+TGG - chr5_4:12000713-12000732 Msa0837890:CDS 20.0%
!! ATTAAACCTAAAGAACAAAA+CGG + chr5_4:12000945-12000964 None:intergenic 20.0%
!! AGTAATTATTTACATGCAAT+TGG - chr5_4:12000985-12001004 Msa0837890:CDS 20.0%
!!! ATTTTATTTGTGATATTGCT+TGG - chr5_4:12001008-12001027 Msa0837890:CDS 20.0%
!!! ATTTTGTGTATAATAATGAC+CGG - chr5_4:12001266-12001285 Msa0837890:CDS 20.0%
!!! ATATGGTTAAATTAGTTTTG+TGG - chr5_4:12001296-12001315 Msa0837890:CDS 20.0%
!!! GTCTATTTTTGAAAAAATTG+TGG - chr5_4:12001516-12001535 Msa0837890:CDS 20.0%
!! GTTATTCATTAATCATCTAT+TGG - chr5_4:12001602-12001621 Msa0837890:CDS 20.0%
!!! TTTTCTTTTATAAGAAAGTG+GGG + chr5_4:12002777-12002796 None:intergenic 20.0%
!!! AATTTTAAATTTAAACCGGA+AGG - chr5_4:12003287-12003306 Msa0837890:CDS 20.0%
!!! ATTTTGTATGAGGTTTATAA+TGG - chr5_4:12003564-12003583 Msa0837890:CDS 20.0%
!! AATAACTACATCAATAAAAG+AGG + chr5_4:12003962-12003981 None:intergenic 20.0%
!!! TCTTTTATTGATGTAGTTAT+TGG - chr5_4:12003961-12003980 Msa0837890:CDS 20.0%
!! ATATTTAGGAAAGAAGTAAA+TGG + chr5_4:12004061-12004080 None:intergenic 20.0%
!! ATTAAGCAGAAATAAATTAG+AGG + chr5_4:12004378-12004397 None:intergenic 20.0%
!!! GCAAGAAATAAATTTTAACA+TGG - chr5_4:12004464-12004483 Msa0837890:CDS 20.0%
!! CATATACATAATCATAGTTA+CGG + chr5_4:12004810-12004829 None:intergenic 20.0%
!! TCATTCATAAAATCATCAAA+TGG + chr5_4:12005072-12005091 None:intergenic 20.0%
!!! ATTTTATGAATGATAGATCA+TGG - chr5_4:12005079-12005098 Msa0837890:intron 20.0%
!!! GTTTGTAAATTTTATGAAAG+TGG - chr5_4:12006617-12006636 Msa0837890:exon 20.0%
! TATTAAATGAATCTGCAAAG+TGG + chr5_4:12001181-12001200 None:intergenic 25.0%
! CATTTAATAACTAATGTACC+TGG - chr5_4:12001192-12001211 Msa0837890:CDS 25.0%
! ATGGTCACTTAAATCTAAAA+AGG - chr5_4:12001319-12001338 Msa0837890:CDS 25.0%
! AAATCGTTGTTAATTGTGTT+TGG + chr5_4:12001368-12001387 None:intergenic 25.0%
! AAACATACACTTGAAAATCA+TGG + chr5_4:12001404-12001423 None:intergenic 25.0%
! GTTAACACAATTCAAATATG+TGG + chr5_4:12001638-12001657 None:intergenic 25.0%
! GTGATAGATTTCTCAAAATA+AGG + chr5_4:12001790-12001809 None:intergenic 25.0%
! GCAAAAAGAAAGTCTATTAA+AGG + chr5_4:12001870-12001889 None:intergenic 25.0%
! ACATGTATAGCACATATAAT+GGG + chr5_4:12001935-12001954 None:intergenic 25.0%
! TACATGTATAGCACATATAA+TGG + chr5_4:12001936-12001955 None:intergenic 25.0%
!! TTTAAGATGGTAAAGTTTGT+GGG + chr5_4:12002412-12002431 None:intergenic 25.0%
! TACCATCTTAAAGATGAAAA+AGG - chr5_4:12002420-12002439 Msa0837890:intron 25.0%
!!! AACCTTTTTCATCTTTAAGA+TGG + chr5_4:12002425-12002444 None:intergenic 25.0%
! ATTTGATTCTATATCTACAC+AGG + chr5_4:12002463-12002482 None:intergenic 25.0%
! TTTGTCTCACATATGAAAAA+TGG - chr5_4:12002579-12002598 Msa0837890:intron 25.0%
!! TCTAGACTAGTAAATTTGTT+TGG - chr5_4:12002708-12002727 Msa0837890:intron 25.0%
!!! TATGCATCTTGATTATTTTG+TGG + chr5_4:12002939-12002958 None:intergenic 25.0%
! AAGTAATTTCCTATTTACCT+CGG + chr5_4:12003352-12003371 None:intergenic 25.0%
! AATATATTTATCCAATGTCC+AGG - chr5_4:12003441-12003460 Msa0837890:intron 25.0%
! ACAAAATATAGCATACTTCA+TGG + chr5_4:12003551-12003570 None:intergenic 25.0%
!! AGTATGCTATATTTTGTATG+AGG - chr5_4:12003554-12003573 Msa0837890:intron 25.0%
! TCGTTTAGTAATCTGATTTA+CGG - chr5_4:12003678-12003697 Msa0837890:intron 25.0%
! AGCATGGCATTAAATTATTT+AGG + chr5_4:12003782-12003801 None:intergenic 25.0%
! TAAGTAACATTTCAAAAGCA+TGG + chr5_4:12003798-12003817 None:intergenic 25.0%
!!! TGAATGCCTCTTTTTTTTTT+TGG - chr5_4:12003921-12003940 Msa0837890:CDS 25.0%
! TTTCCACCAAAAAAAAAAAG+AGG + chr5_4:12003930-12003949 None:intergenic 25.0%
! AAAGAATAACCAACAAAAAG+GGG + chr5_4:12004289-12004308 None:intergenic 25.0%
! GAAAGAATAACCAACAAAAA+GGG + chr5_4:12004290-12004309 None:intergenic 25.0%
! AGAAAGAATAACCAACAAAA+AGG + chr5_4:12004291-12004310 None:intergenic 25.0%
! AATGAATGAATAAGCAGAAA+AGG + chr5_4:12004543-12004562 None:intergenic 25.0%
! TCATACAATGAATCCAAATT+GGG + chr5_4:12004674-12004693 None:intergenic 25.0%
! TATGATTATGTATATGCAGA+TGG - chr5_4:12004814-12004833 Msa0837890:intron 25.0%
!! GAAAAAAACTCTGAAGATAA+TGG - chr5_4:12005582-12005601 Msa0837890:intron 25.0%
!!! TGGAAGAAGTATTTACATTA+TGG + chr5_4:12005722-12005741 None:intergenic 25.0%
! CCAGGTTAAATTACAATAAT+TGG + chr5_4:12006755-12006774 None:intergenic 25.0%
! CCAATTATTGTAATTTAACC+TGG - chr5_4:12006752-12006771 Msa0837890:five_prime_UTR 25.0%
ATTTATGGAACAATCAAAGC+CGG - chr5_4:12000288-12000307 Msa0837890:CDS 30.0%
! TTCTCTCTCTTTTCATTTCT+AGG - chr5_4:12000819-12000838 Msa0837890:CDS 30.0%
! TCTCTCTCTTTTCATTTCTA+GGG - chr5_4:12000820-12000839 Msa0837890:CDS 30.0%
!!! AATTCCATTTGGCTTTTGAA+CGG + chr5_4:12000898-12000917 None:intergenic 30.0%
!! CTTAAACCGTTTTGTTCTTT+AGG - chr5_4:12000936-12000955 Msa0837890:CDS 30.0%
TGTTTGTAATAGTGACACAA+GGG + chr5_4:12001153-12001172 None:intergenic 30.0%
TTGTTTGTAATAGTGACACA+AGG + chr5_4:12001154-12001173 None:intergenic 30.0%
TCTGATATGTATTATAGACC+AGG + chr5_4:12001213-12001232 None:intergenic 30.0%
!!! GGTTAAATTAGTTTTGTGGA+TGG - chr5_4:12001300-12001319 Msa0837890:CDS 30.0%
! TTGGTGGATGATTAATTAGT+TGG + chr5_4:12001349-12001368 None:intergenic 30.0%
CACTTGAAAATCATGGTTAA+TGG + chr5_4:12001397-12001416 None:intergenic 30.0%
! GCTAATGATGTTTAAAGTTG+TGG - chr5_4:12001538-12001557 Msa0837890:CDS 30.0%
CTAATCGGCAAATTAACAAA+TGG + chr5_4:12001755-12001774 None:intergenic 30.0%
GTTTCTGTTAGAGGAAATAA+AGG - chr5_4:12001997-12002016 Msa0837890:CDS 30.0%
GCAAATGAAATGATACATGA+TGG - chr5_4:12002206-12002225 Msa0837890:CDS 30.0%
!! AGTATCTTTTCAAGGTGTAT+TGG - chr5_4:12002295-12002314 Msa0837890:intron 30.0%
!! CTTTAAGATGGTAAAGTTTG+TGG + chr5_4:12002413-12002432 None:intergenic 30.0%
CTTAAAGATGAAAAAGGTTC+TGG - chr5_4:12002426-12002445 Msa0837890:intron 30.0%
TTTGAAAAACAAGAAGCCTA+AGG - chr5_4:12002485-12002504 Msa0837890:intron 30.0%
TTGAAAAACAAGAAGCCTAA+GGG - chr5_4:12002486-12002505 Msa0837890:intron 30.0%
CAATTAGAGATTTCTGTTGA+GGG + chr5_4:12002680-12002699 None:intergenic 30.0%
ACAATTAGAGATTTCTGTTG+AGG + chr5_4:12002681-12002700 None:intergenic 30.0%
! TCCAAAATTATTTTCTGCAG+GGG + chr5_4:12002802-12002821 None:intergenic 30.0%
! CTCCAAAATTATTTTCTGCA+GGG + chr5_4:12002803-12002822 None:intergenic 30.0%
TAAGAGATGCACAAGTAAAA+AGG - chr5_4:12002899-12002918 Msa0837890:CDS 30.0%
! ACATTAACTTGATCTACTTG+CGG - chr5_4:12002979-12002998 Msa0837890:intron 30.0%
CAATGTGTAAAAATTCACTG+AGG + chr5_4:12003162-12003181 None:intergenic 30.0%
!! TCACGTCTTGAAATTAGTTT+TGG - chr5_4:12003188-12003207 Msa0837890:intron 30.0%
TTTAAATTTAAACCGGAAGG+AGG - chr5_4:12003290-12003309 Msa0837890:intron 30.0%
! CAAGTCTTCATATTTTGTAG+AGG - chr5_4:12003383-12003402 Msa0837890:intron 30.0%
TTGCGTCAAAGTATAAAGTA+TGG - chr5_4:12003478-12003497 Msa0837890:intron 30.0%
TGCGTCAAAGTATAAAGTAT+GGG - chr5_4:12003479-12003498 Msa0837890:intron 30.0%
GGCATTAAATTATTTAGGCA+TGG + chr5_4:12003777-12003796 None:intergenic 30.0%
AATTCAATTCAGATGGCATT+TGG + chr5_4:12003828-12003847 None:intergenic 30.0%
TCTCACAAATTCAATTCAGA+TGG + chr5_4:12003835-12003854 None:intergenic 30.0%
!!! ATGCCTCTTTTTTTTTTTGG+TGG - chr5_4:12003924-12003943 Msa0837890:CDS 30.0%
AATTGCGGCTTAATAATCTT+CGG - chr5_4:12003993-12004012 Msa0837890:CDS 30.0%
AGGAAAGAAGTAAATGGTAA+AGG + chr5_4:12004055-12004074 None:intergenic 30.0%
TTCCTAAATATGCTAAACTG+TGG - chr5_4:12004070-12004089 Msa0837890:CDS 30.0%
TCCTAAATATGCTAAACTGT+GGG - chr5_4:12004071-12004090 Msa0837890:CDS 30.0%
!! TATTTTTACCCCCTTTTTGT+TGG - chr5_4:12004277-12004296 Msa0837890:CDS 30.0%
AAGAATAACCAACAAAAAGG+GGG + chr5_4:12004288-12004307 None:intergenic 30.0%
AAATAAATTAGAGGACAGCA+CGG + chr5_4:12004369-12004388 None:intergenic 30.0%
CATACAATGAATCCAAATTG+GGG + chr5_4:12004673-12004692 None:intergenic 30.0%
CTCATACAATGAATCCAAAT+TGG + chr5_4:12004675-12004694 None:intergenic 30.0%
AAACTTGAAAACAAACTCAG+TGG + chr5_4:12004754-12004773 None:intergenic 30.0%
! TACCTATTTTCTCCAGAATT+TGG - chr5_4:12004842-12004861 Msa0837890:CDS 30.0%
! ACCTATTTTCTCCAGAATTT+GGG - chr5_4:12004843-12004862 Msa0837890:CDS 30.0%
GTAAGCATGTATTCTCAATT+GGG + chr5_4:12004924-12004943 None:intergenic 30.0%
AGTAAGCATGTATTCTCAAT+TGG + chr5_4:12004925-12004944 None:intergenic 30.0%
TTGTTAACTGATGCACTTAA+TGG - chr5_4:12005234-12005253 Msa0837890:intron 30.0%
TGTTAACTGATGCACTTAAT+GGG - chr5_4:12005235-12005254 Msa0837890:intron 30.0%
TTCATCTTTACCATTAGACT+GGG + chr5_4:12005442-12005461 None:intergenic 30.0%
ATTCATCTTTACCATTAGAC+TGG + chr5_4:12005443-12005462 None:intergenic 30.0%
CTCATTCAAATTCTCAGAAA+AGG + chr5_4:12005526-12005545 None:intergenic 30.0%
AGAATCACACCAACAAATTA+AGG - chr5_4:12005544-12005563 Msa0837890:intron 30.0%
GAATCACACCAACAAATTAA+GGG - chr5_4:12005545-12005564 Msa0837890:intron 30.0%
! ACTGATTCATCAAAATCATC+TGG + chr5_4:12005876-12005895 None:intergenic 30.0%
! TGAATCAGTTTCAGATCTTT+TGG - chr5_4:12005887-12005906 Msa0837890:intron 30.0%
TAGTAACTGTAAATCACATG+TGG + chr5_4:12006069-12006088 None:intergenic 30.0%
TCATCATCAAAGAATATCAG+AGG - chr5_4:12006139-12006158 Msa0837890:intron 30.0%
!! AGAAATTCTAAAGTTGACGT+GGG - chr5_4:12006173-12006192 Msa0837890:intron 30.0%
CGGATTACAAAAATCAAATG+CGG + chr5_4:12006708-12006727 None:intergenic 30.0%
AATGAGCAATCACATAAAAC+AGG + chr5_4:12006830-12006849 None:intergenic 30.0%
AAGAACATACCAGTACTAAT+TGG + chr5_4:12006934-12006953 None:intergenic 30.0%
!! AATTAGTACTGGTATGTTCT+TGG - chr5_4:12006933-12006952 Msa0837890:five_prime_UTR 30.0%
AAAAAGGAGTAATTAGAGGG+AGG - chr5_4:11999921-11999940 Msa0837890:three_prime_UTR 35.0%
GAAAGTAGAGAGAGAATATG+TGG + chr5_4:12000038-12000057 None:intergenic 35.0%
AAGAGATCTCTATCAAGCTA+GGG + chr5_4:12000064-12000083 None:intergenic 35.0%
! GGAGCTGTTTGTGATAATTT+TGG + chr5_4:12000107-12000126 None:intergenic 35.0%
AAACTGAAAAGTGAAAACCC+TGG + chr5_4:12000169-12000188 None:intergenic 35.0%
!! CTCTCTCTTTTCATTTCTAG+GGG - chr5_4:12000821-12000840 Msa0837890:CDS 35.0%
TCAAAAGCCAAATGGAATTG+CGG - chr5_4:12000899-12000918 Msa0837890:CDS 35.0%
TTGTGTATAATAATGACCGG+AGG - chr5_4:12001269-12001288 Msa0837890:CDS 35.0%
TGTGTATAATAATGACCGGA+GGG - chr5_4:12001270-12001289 Msa0837890:CDS 35.0%
TCGTTGTTAATTGTGTTTGG+TGG + chr5_4:12001365-12001384 None:intergenic 35.0%
AAGTTGTGGTTAATTGTGCT+TGG - chr5_4:12001552-12001571 Msa0837890:CDS 35.0%
GGTTAATTGTGCTTGGTAAA+TGG - chr5_4:12001559-12001578 Msa0837890:CDS 35.0%
TAAAGGAAAGCTGCACAATT+TGG + chr5_4:12001853-12001872 None:intergenic 35.0%
ATGTACGTATTCTTTGTGCA+AGG - chr5_4:12001951-12001970 Msa0837890:CDS 35.0%
TGTACGTATTCTTTGTGCAA+GGG - chr5_4:12001952-12001971 Msa0837890:CDS 35.0%
! CAAGGGGTGTATAAAAAATG+CGG - chr5_4:12001969-12001988 Msa0837890:CDS 35.0%
AGAGGAAATAAAGGTTTGTG+TGG - chr5_4:12002006-12002025 Msa0837890:CDS 35.0%
! TACCATTTCCTTATTTCCCT+GGG + chr5_4:12002070-12002089 None:intergenic 35.0%
! ATACCATTTCCTTATTTCCC+TGG + chr5_4:12002071-12002090 None:intergenic 35.0%
TTATAAGAAAGTGGGGTTCA+AGG + chr5_4:12002770-12002789 None:intergenic 35.0%
! ACCCCTGCAGAAAATAATTT+TGG - chr5_4:12002798-12002817 Msa0837890:intron 35.0%
! GCTCCAAAATTATTTTCTGC+AGG + chr5_4:12002804-12002823 None:intergenic 35.0%
!!! GCAGAAAATAATTTTGGAGC+AGG - chr5_4:12002804-12002823 Msa0837890:intron 35.0%
ATTAGTGATGCTGTTGCAAA+TGG - chr5_4:12002828-12002847 Msa0837890:CDS 35.0%
!! TCTTGATTATTTTGTGGCAC+AGG + chr5_4:12002933-12002952 None:intergenic 35.0%
TATAGACTTGTCCAAGTTGT+AGG - chr5_4:12003110-12003129 Msa0837890:intron 35.0%
! GAGGTATTAGATGTGGTAAA+AGG + chr5_4:12003143-12003162 None:intergenic 35.0%
! ATTCACTGAGGTATTAGATG+TGG + chr5_4:12003150-12003169 None:intergenic 35.0%
!! GTTTTGGTAACTAATTGTGC+AGG - chr5_4:12003204-12003223 Msa0837890:intron 35.0%
GTTGCTGAACCTTACAAAAT+TGG - chr5_4:12003237-12003256 Msa0837890:intron 35.0%
! GTTCTTGTGCCAATTTTGTA+AGG + chr5_4:12003249-12003268 None:intergenic 35.0%
! TAATGGCTGTCTTTGTTTGT+AGG - chr5_4:12003581-12003600 Msa0837890:CDS 35.0%
! AATGGCTGTCTTTGTTTGTA+GGG - chr5_4:12003582-12003601 Msa0837890:CDS 35.0%
TATTGGAAGCTGAGAAATTG+CGG - chr5_4:12003978-12003997 Msa0837890:CDS 35.0%
ATTGCGGCTTAATAATCTTC+GGG - chr5_4:12003994-12004013 Msa0837890:CDS 35.0%
ACCCACAGTTTAGCATATTT+AGG + chr5_4:12004075-12004094 None:intergenic 35.0%
!! GGGTACTGAATAATGCATAT+TGG - chr5_4:12004091-12004110 Msa0837890:CDS 35.0%
CTATCATAGGAAAACTGTGT+AGG - chr5_4:12004226-12004245 Msa0837890:CDS 35.0%
TGGATATGTTCAGCAATAAG+TGG - chr5_4:12004484-12004503 Msa0837890:CDS 35.0%
GGATATGTTCAGCAATAAGT+GGG - chr5_4:12004485-12004504 Msa0837890:CDS 35.0%
CATTCTTTAAGCGTGCAATT+TGG + chr5_4:12004572-12004591 None:intergenic 35.0%
GCAGTTACTAAATTCTTCAG+AGG - chr5_4:12004604-12004623 Msa0837890:CDS 35.0%
! TCCCAAATTCTGGAGAAAAT+AGG + chr5_4:12004847-12004866 None:intergenic 35.0%
! ATTTTCTCCAGAATTTGGGA+TGG - chr5_4:12004847-12004866 Msa0837890:CDS 35.0%
CATCAATAGGAGTTTCGTTT+GGG + chr5_4:12004963-12004982 None:intergenic 35.0%
TCATCAATAGGAGTTTCGTT+TGG + chr5_4:12004964-12004983 None:intergenic 35.0%
ACATCAGCACTATCATCAAT+AGG + chr5_4:12004976-12004995 None:intergenic 35.0%
TGATAGATCATGGCATTATC+AGG - chr5_4:12005089-12005108 Msa0837890:intron 35.0%
TACAGCTGCAACATAGAAAA+AGG + chr5_4:12005138-12005157 None:intergenic 35.0%
TTTGTCATCCAATGCAACAT+TGG + chr5_4:12005316-12005335 None:intergenic 35.0%
CTCTGATCTGTTCTATGATT+CGG + chr5_4:12005395-12005414 None:intergenic 35.0%
ACAGATCAGAGAACAAAAAG+TGG - chr5_4:12005404-12005423 Msa0837890:intron 35.0%
ATGGTAAAGATGAATCCGTT+AGG - chr5_4:12005448-12005467 Msa0837890:intron 35.0%
AAATTCTCAGAAAAGGCAGT+TGG + chr5_4:12005519-12005538 None:intergenic 35.0%
!! ATGATCCTCCCTTAATTTGT+TGG + chr5_4:12005556-12005575 None:intergenic 35.0%
AACAAATTAAGGGAGGATCA+TGG - chr5_4:12005555-12005574 Msa0837890:intron 35.0%
ACAAATTAAGGGAGGATCAT+GGG - chr5_4:12005556-12005575 Msa0837890:intron 35.0%
ATGGAAATCATGACTCAAAC+AGG - chr5_4:12005601-12005620 Msa0837890:intron 35.0%
CAATTGCTTTGATACCACAT+CGG - chr5_4:12005740-12005759 Msa0837890:intron 35.0%
AAATCAAATCCCAGCTTAAG+TGG + chr5_4:12005792-12005811 None:intergenic 35.0%
CTACGTTTCATGATTGAAGT+GGG + chr5_4:12005954-12005973 None:intergenic 35.0%
ACTACGTTTCATGATTGAAG+TGG + chr5_4:12005955-12005974 None:intergenic 35.0%
TTCAATCATGAAACGTAGTG+AGG - chr5_4:12005956-12005975 Msa0837890:intron 35.0%
!! TTGACATCTGCTTGTTGTAA+CGG + chr5_4:12006116-12006135 None:intergenic 35.0%
!! GTCAACTTTAGAATTTCTCG+AGG + chr5_4:12006171-12006190 None:intergenic 35.0%
!! GAGAAATTCTAAAGTTGACG+TGG - chr5_4:12006172-12006191 Msa0837890:intron 35.0%
! TATGTGTTTCAAGTAACCAG+TGG - chr5_4:12006207-12006226 Msa0837890:intron 35.0%
! ATGTGTTTCAAGTAACCAGT+GGG - chr5_4:12006208-12006227 Msa0837890:intron 35.0%
! TTTATGAAAGTGGGTACTGT+AGG - chr5_4:12006627-12006646 Msa0837890:five_prime_UTR 35.0%
! AATACTTCCACCCATGATTT+TGG - chr5_4:12006666-12006685 Msa0837890:five_prime_UTR 35.0%
CTAATGGGATCCAAAATCAT+GGG + chr5_4:12006679-12006698 None:intergenic 35.0%
! ATTTTGGATCCCATTAGCAT+TGG - chr5_4:12006682-12006701 Msa0837890:five_prime_UTR 35.0%
ATCCGTAACATATCTGTAGT+TGG - chr5_4:12006723-12006742 Msa0837890:five_prime_UTR 35.0%
AGCCAACTACAGATATGTTA+CGG + chr5_4:12006728-12006747 None:intergenic 35.0%
! ATGAAAATTTGGGGTCAGAA+AGG + chr5_4:12006896-12006915 None:intergenic 35.0%
CTTGTGTTACCAATTAGTAC+TGG - chr5_4:12006922-12006941 Msa0837890:five_prime_UTR 35.0%
TACTATTGCTCACTCACGAT+TGG + chr5_4:11999959-11999978 None:intergenic 40.0%
AATCGTGAGTGAGCAATAGT+AGG - chr5_4:11999958-11999977 Msa0837890:three_prime_UTR 40.0%
GAAGAGATCTCTATCAAGCT+AGG + chr5_4:12000065-12000084 None:intergenic 40.0%
! CATGGAAATGGAAATGGACT+GGG + chr5_4:12000144-12000163 None:intergenic 40.0%
ACATGGAAATGGAAATGGAC+TGG + chr5_4:12000145-12000164 None:intergenic 40.0%
ATTTCCATTTCCATGTGCCA+GGG - chr5_4:12000149-12000168 Msa0837890:three_prime_UTR 40.0%
AGTTTCCGATGTGAACATGA+CGG - chr5_4:12000411-12000430 Msa0837890:CDS 40.0%
ATGACAGCGAGAACTACTTT+CGG + chr5_4:12000463-12000482 None:intergenic 40.0%
CTTCATAACCTCACTGTTCT+CGG + chr5_4:12000488-12000507 None:intergenic 40.0%
TCTTCCTTCTTGATCTGCTT+CGG + chr5_4:12000559-12000578 None:intergenic 40.0%
GTTTGCTTCATTTGCTTCGA+CGG - chr5_4:12000586-12000605 Msa0837890:CDS 40.0%
GAGGGTTTAGCGATTAAGAA+TGG - chr5_4:12000642-12000661 Msa0837890:CDS 40.0%
TTGTCCTAAAGCGTATCATC+CGG - chr5_4:12000844-12000863 Msa0837890:CDS 40.0%
TCTTCCGTTCAAAAGCCAAA+TGG - chr5_4:12000891-12000910 Msa0837890:CDS 40.0%
!! CAAAGTACCGCAATTCCATT+TGG + chr5_4:12000909-12000928 None:intergenic 40.0%
ATTTAACCATATGCTCCCTC+CGG + chr5_4:12001288-12001307 None:intergenic 40.0%
AGGAATGAGTGAGTGCTAAT+CGG + chr5_4:12001770-12001789 None:intergenic 40.0%
GTACGTATTCTTTGTGCAAG+GGG - chr5_4:12001953-12001972 Msa0837890:CDS 40.0%
!!! GCGGATTTTGTTTCTGTTAG+AGG - chr5_4:12001988-12002007 Msa0837890:CDS 40.0%
!!! TCAATGGGTTTTTAGCTCGA+AGG + chr5_4:12002362-12002381 None:intergenic 40.0%
TTGTTTGGAAAAGCTCGTCT+TGG - chr5_4:12002723-12002742 Msa0837890:intron 40.0%
TGATGCTGTTGCAAATGGAA+AGG - chr5_4:12002833-12002852 Msa0837890:CDS 40.0%
! GTCTGACTGATGATAGTGAA+AGG - chr5_4:12003018-12003037 Msa0837890:intron 40.0%
TAGTGAAAGGATTCACGAGA+AGG - chr5_4:12003031-12003050 Msa0837890:intron 40.0%
!!! AGGTTGTTGGTTCTTTTGTG+CGG - chr5_4:12003051-12003070 Msa0837890:intron 40.0%
AAGGTCACATACCTACAACT+TGG + chr5_4:12003124-12003143 None:intergenic 40.0%
TAATTGTGCAGGTACAAGCA+AGG - chr5_4:12003215-12003234 Msa0837890:intron 40.0%
GATAGACGAGATTTCGAATC+AGG - chr5_4:12003320-12003339 Msa0837890:intron 40.0%
AGGAGTCAAGTTTCTTCCAT+GGG - chr5_4:12003403-12003422 Msa0837890:CDS 40.0%
TAATCATCTGCAAACTCCCA+TGG + chr5_4:12003422-12003441 None:intergenic 40.0%
GCTTTCAAAGAGATTGACTG+TGG - chr5_4:12003501-12003520 Msa0837890:intron 40.0%
TTAAGCGTGCAATTTGGTCA+AGG + chr5_4:12004566-12004585 None:intergenic 40.0%
TATGAGTCTGATGAAGATGC+TGG - chr5_4:12004689-12004708 Msa0837890:intron 40.0%
GAGTCAGATGGCAATAAACA+AGG - chr5_4:12004713-12004732 Msa0837890:intron 40.0%
CTTGAAAACAAACTCAGTGG+AGG + chr5_4:12004751-12004770 None:intergenic 40.0%
! ATTTGGGATGGTGTCTTGAA+TGG - chr5_4:12004859-12004878 Msa0837890:CDS 40.0%
ATGGTGTCTTGAATGGTGTT+GGG - chr5_4:12004866-12004885 Msa0837890:CDS 40.0%
TGTATTCTCAATTGGGTCAC+TGG + chr5_4:12004917-12004936 None:intergenic 40.0%
TCATCTCCACTTATCTCTAC+AGG - chr5_4:12005036-12005055 Msa0837890:intron 40.0%
CATCTCCACTTATCTCTACA+GGG - chr5_4:12005037-12005056 Msa0837890:intron 40.0%
CTATGTTGCAGCTGTATAAG+TGG - chr5_4:12005142-12005161 Msa0837890:intron 40.0%
CTGTATAAGTGGAATGCAAG+TGG - chr5_4:12005153-12005172 Msa0837890:intron 40.0%
!! TCCATACTTTGAGATCTGGA+GGG + chr5_4:12005185-12005204 None:intergenic 40.0%
!! ATCCTCCATACTTTGAGATC+TGG + chr5_4:12005189-12005208 None:intergenic 40.0%
AACAGCCTATTGCTCTCTTT+AGG - chr5_4:12005288-12005307 Msa0837890:intron 40.0%
TTTAGGAGCCAATGTTGCAT+TGG - chr5_4:12005305-12005324 Msa0837890:intron 40.0%
! TAGAAGTGTGTACATGTGAC+TGG + chr5_4:12005491-12005510 None:intergenic 40.0%
TCACACCAACAAATTAAGGG+AGG - chr5_4:12005548-12005567 Msa0837890:intron 40.0%
TCAGATAGTGAAGACAACTC+AGG - chr5_4:12005669-12005688 Msa0837890:intron 40.0%
CAGATAGTGAAGACAACTCA+GGG - chr5_4:12005670-12005689 Msa0837890:intron 40.0%
CGATGTGGTATCAAAGCAAT+TGG + chr5_4:12005742-12005761 None:intergenic 40.0%
AAGAACATCACCACTTAAGC+TGG - chr5_4:12005779-12005798 Msa0837890:intron 40.0%
AGAACATCACCACTTAAGCT+GGG - chr5_4:12005780-12005799 Msa0837890:intron 40.0%
! TTCAGATCTTTTGGCAGAAG+TGG - chr5_4:12005896-12005915 Msa0837890:intron 40.0%
! CTTTTACCTGCATCAAGCAT+TGG + chr5_4:12006032-12006051 None:intergenic 40.0%
AACGAAATGCAAACACGAGT+TGG - chr5_4:12006348-12006367 Msa0837890:CDS 40.0%
ACGAAATGCAAACACGAGTT+GGG - chr5_4:12006349-12006368 Msa0837890:CDS 40.0%
TCTGTAGTAACTCCAAGCTT+TGG - chr5_4:12006422-12006441 Msa0837890:CDS 40.0%
CTGTAGTAACTCCAAGCTTT+GGG - chr5_4:12006423-12006442 Msa0837890:CDS 40.0%
TGTAGTAACTCCAAGCTTTG+GGG - chr5_4:12006424-12006443 Msa0837890:CDS 40.0%
GATCACTTCCGTATCTTGTT+TGG + chr5_4:12006454-12006473 None:intergenic 40.0%
! AAAGTGGGTACTGTAGGAAA+GGG - chr5_4:12006633-12006652 Msa0837890:five_prime_UTR 40.0%
GCTAATGGGATCCAAAATCA+TGG + chr5_4:12006680-12006699 None:intergenic 40.0%
! CACTCACGATTGGTTCAATG+TGG + chr5_4:11999949-11999968 None:intergenic 45.0%
GACTGGGTTCAGATGTAAGA+AGG + chr5_4:12000128-12000147 None:intergenic 45.0%
CTGGCACATGGAAATGGAAA+TGG + chr5_4:12000150-12000169 None:intergenic 45.0%
CATTTCCATTTCCATGTGCC+AGG - chr5_4:12000148-12000167 Msa0837890:three_prime_UTR 45.0%
AAAACCCTGGCACATGGAAA+TGG + chr5_4:12000156-12000175 None:intergenic 45.0%
AAAGTGAAAACCCTGGCACA+TGG + chr5_4:12000162-12000181 None:intergenic 45.0%
!! ATCGAGTTGAGTTTGCGTGA+GGG + chr5_4:12000192-12000211 None:intergenic 45.0%
!! AATCGAGTTGAGTTTGCGTG+AGG + chr5_4:12000193-12000212 None:intergenic 45.0%
ACAATCAAAGCCGGAAACAC+CGG - chr5_4:12000297-12000316 Msa0837890:CDS 45.0%
TCTCTCCGTCATGTTCACAT+CGG + chr5_4:12000419-12000438 None:intergenic 45.0%
GAGGTTATGAAGAAGAAGCG+CGG - chr5_4:12000496-12000515 Msa0837890:CDS 45.0%
! ACTTTCTTTTTGCGCTGCTC+AGG - chr5_4:12001877-12001896 Msa0837890:CDS 45.0%
TGCCCAGGGAAATAAGGAAA+TGG - chr5_4:12002065-12002084 Msa0837890:intron 45.0%
TCCATGTGTACCAAGACTGA+AGG - chr5_4:12002168-12002187 Msa0837890:intron 45.0%
CCATGTGTACCAAGACTGAA+GGG - chr5_4:12002169-12002188 Msa0837890:intron 45.0%
CATGTGTACCAAGACTGAAG+GGG - chr5_4:12002170-12002189 Msa0837890:intron 45.0%
ATCAAGTTCCCCTTCAGTCT+TGG + chr5_4:12002181-12002200 None:intergenic 45.0%
!!! GCTACTTTTACAGTGTGACG+TGG - chr5_4:12002248-12002267 Msa0837890:CDS 45.0%
ATTTCGATGACAAGAGCAGC+TGG - chr5_4:12002271-12002290 Msa0837890:intron 45.0%
TTTCGATGACAAGAGCAGCT+GGG - chr5_4:12002272-12002291 Msa0837890:intron 45.0%
!!! CAGCTGGGAGTATCTTTTCA+AGG - chr5_4:12002287-12002306 Msa0837890:intron 45.0%
TTGTGGGAAGTTTGACCCAT+AGG + chr5_4:12002396-12002415 None:intergenic 45.0%
TTTGCCTGAGTGCAAGAGAT+GGG - chr5_4:12002536-12002555 Msa0837890:intron 45.0%
TGATGTCCAGAATCTCTTGC+TGG - chr5_4:12002626-12002645 Msa0837890:intron 45.0%
CATACTCCAGCAAGAGATTC+TGG + chr5_4:12002635-12002654 None:intergenic 45.0%
TGCTGTTGCAAATGGAAAGG+AGG - chr5_4:12002836-12002855 Msa0837890:CDS 45.0%
AGGATTCACGAGAAGGTTGT+TGG - chr5_4:12003038-12003057 Msa0837890:intron 45.0%
GTGCGGATAAGAATCTCTAG+TGG - chr5_4:12003068-12003087 Msa0837890:intron 45.0%
CTATCGATATGACCTCCTTC+CGG + chr5_4:12003305-12003324 None:intergenic 45.0%
AGGAGTTCTCCGAGGTAAAT+AGG - chr5_4:12003340-12003359 Msa0837890:intron 45.0%
GAGGAGTCAAGTTTCTTCCA+TGG - chr5_4:12003402-12003421 Msa0837890:CDS 45.0%
CTTGCATTCATCCTGGACAT+TGG + chr5_4:12003455-12003474 None:intergenic 45.0%
ATAGTAACACCCACGCATCT+AGG + chr5_4:12004210-12004229 None:intergenic 45.0%
!! TGCGTGGGTGTTACTATCAT+AGG - chr5_4:12004213-12004232 Msa0837890:CDS 45.0%
GTGGGTATGTGCATGTTAGT+TGG - chr5_4:12004503-12004522 Msa0837890:CDS 45.0%
TTGCACGCTTAAAGAATGCG+TGG - chr5_4:12004574-12004593 Msa0837890:CDS 45.0%
TGTACACTCTGACCCCAATT+TGG - chr5_4:12004658-12004677 Msa0837890:intron 45.0%
! ACGGTGATATAAGCACTGTC+AGG + chr5_4:12004791-12004810 None:intergenic 45.0%
CAAGACACCATCCCAAATTC+TGG + chr5_4:12004857-12004876 None:intergenic 45.0%
GATGGTGTCTTGAATGGTGT+TGG - chr5_4:12004865-12004884 Msa0837890:CDS 45.0%
! TGGTGTCTTGAATGGTGTTG+GGG - chr5_4:12004867-12004886 Msa0837890:CDS 45.0%
!! AGAAGTGTCTAGTGTTGCAG+TGG - chr5_4:12005008-12005027 Msa0837890:intron 45.0%
GCAATCCCTGTAGAGATAAG+TGG + chr5_4:12005045-12005064 None:intergenic 45.0%
TGGCATTATCAGGATCCATC+TGG - chr5_4:12005099-12005118 Msa0837890:intron 45.0%
GGCATTATCAGGATCCATCT+GGG - chr5_4:12005100-12005119 Msa0837890:intron 45.0%
TTATCAGGATCCATCTGGGA+AGG - chr5_4:12005104-12005123 Msa0837890:intron 45.0%
TCCCTCCAGATCTCAAAGTA+TGG - chr5_4:12005181-12005200 Msa0837890:intron 45.0%
!! CTCCATACTTTGAGATCTGG+AGG + chr5_4:12005186-12005205 None:intergenic 45.0%
CTCCAGATCTCAAAGTATGG+AGG - chr5_4:12005184-12005203 Msa0837890:intron 45.0%
! GCTCCAAAAATGTGCCATTG+CGG - chr5_4:12005262-12005281 Msa0837890:intron 45.0%
! GTTCCGCAATGGCACATTTT+TGG + chr5_4:12005268-12005287 None:intergenic 45.0%
AATAGGCTGTTGTTCCGCAA+TGG + chr5_4:12005279-12005298 None:intergenic 45.0%
TGGCTCCTAAAGAGAGCAAT+AGG + chr5_4:12005296-12005315 None:intergenic 45.0%
GGATGACAAAGAAAGCAGTC+AGG - chr5_4:12005326-12005345 Msa0837890:intron 45.0%
GACAAAGAAAGCAGTCAGGA+TGG - chr5_4:12005330-12005349 Msa0837890:intron 45.0%
AAAGAAAGCAGTCAGGATGG+TGG - chr5_4:12005333-12005352 Msa0837890:intron 45.0%
AAGAAAGCAGTCAGGATGGT+GGG - chr5_4:12005334-12005353 Msa0837890:intron 45.0%
GATACTTCGACCCAGTCTAA+TGG - chr5_4:12005429-12005448 Msa0837890:intron 45.0%
GATGAATCCGTTAGGAGCAA+TGG - chr5_4:12005456-12005475 Msa0837890:intron 45.0%
AATCCGTTAGGAGCAATGGA+TGG - chr5_4:12005460-12005479 Msa0837890:intron 45.0%
ATGCCATCCATTGCTCCTAA+CGG + chr5_4:12005466-12005485 None:intergenic 45.0%
CATGACTCAAACAGGACTTC+TGG - chr5_4:12005609-12005628 Msa0837890:intron 45.0%
TCTGGTGGTCAGAGTAATAG+TGG - chr5_4:12005627-12005646 Msa0837890:intron 45.0%
AGACAACTCAGGGCAATCTT+CGG - chr5_4:12005680-12005699 Msa0837890:intron 45.0%
TAGTTGCATTGCATGCTGGA+GGG + chr5_4:12005830-12005849 None:intergenic 45.0%
ACTACGTGGCAGGCTATTAT+AGG - chr5_4:12005846-12005865 Msa0837890:intron 45.0%
! AGATCTTTTGGCAGAAGTGG+AGG - chr5_4:12005899-12005918 Msa0837890:intron 45.0%
CGTAGTGAGGAATTGACTGA+TGG - chr5_4:12005969-12005988 Msa0837890:intron 45.0%
CTTAGTCCAATGCTTGATGC+AGG - chr5_4:12006023-12006042 Msa0837890:CDS 45.0%
ATCTCAATCTACAGCAGCAG+AGG - chr5_4:12006088-12006107 Msa0837890:intron 45.0%
! TTTTCCAGCCACTGCAACAT+TGG - chr5_4:12006256-12006275 Msa0837890:intron 45.0%
TTTCCAGCCACTGCAACATT+GGG - chr5_4:12006257-12006276 Msa0837890:intron 45.0%
TTCCAATCCAAGTCTCCAAG+TGG + chr5_4:12006297-12006316 None:intergenic 45.0%
! TGGATTGGAAAGTACACACC+TGG - chr5_4:12006307-12006326 Msa0837890:CDS 45.0%
! TGGAAAGTACACACCTGGAA+TGG - chr5_4:12006312-12006331 Msa0837890:CDS 45.0%
! GGAAAGTACACACCTGGAAT+GGG - chr5_4:12006313-12006332 Msa0837890:CDS 45.0%
! GAAAGTACACACCTGGAATG+GGG - chr5_4:12006314-12006333 Msa0837890:CDS 45.0%
CGAAATGCAAACACGAGTTG+GGG - chr5_4:12006350-12006369 Msa0837890:CDS 45.0%
GGGGATAGCCAAACAAGATA+CGG - chr5_4:12006443-12006462 Msa0837890:CDS 45.0%
! GATTTTCTGTGCCCAGAGAT+CGG - chr5_4:12006474-12006493 Msa0837890:CDS 45.0%
! ATTTTCTGTGCCCAGAGATC+GGG - chr5_4:12006475-12006494 Msa0837890:CDS 45.0%
AGGGAACCAGGTTTAGTTAG+AGG - chr5_4:12006515-12006534 Msa0837890:CDS 45.0%
CCATTACCAACACCAAATGG+CGG + chr5_4:12006563-12006582 None:intergenic 45.0%
CCTCCATTACCAACACCAAA+TGG + chr5_4:12006566-12006585 None:intergenic 45.0%
!! CCATTTGGTGTTGGTAATGG+AGG - chr5_4:12006563-12006582 Msa0837890:CDS 45.0%
TTACAAACTCGCTGCCCTTT+GGG + chr5_4:12006605-12006624 None:intergenic 45.0%
TTTACAAACTCGCTGCCCTT+TGG + chr5_4:12006606-12006625 None:intergenic 45.0%
! GAAAGTGGGTACTGTAGGAA+AGG - chr5_4:12006632-12006651 Msa0837890:five_prime_UTR 45.0%
! AAGTGGGTACTGTAGGAAAG+GGG - chr5_4:12006634-12006653 Msa0837890:five_prime_UTR 45.0%
!! TCATGGGTGGAAGTATTCAC+AGG + chr5_4:12006663-12006682 None:intergenic 45.0%
ATGGGATCCAAAATCATGGG+TGG + chr5_4:12006676-12006695 None:intergenic 45.0%
CAAATGCGGCCAATGCTAAT+GGG + chr5_4:12006694-12006713 None:intergenic 45.0%
TCAAATGCGGCCAATGCTAA+TGG + chr5_4:12006695-12006714 None:intergenic 45.0%
!!! TTAAAATTTAAAACAAATAT+AGG + chr5_4:12001812-12001831 None:intergenic 5.0%
!!! TAAATTTTAATAGTTTATTT+TGG - chr5_4:12001822-12001841 Msa0837890:CDS 5.0%
! GACTGTAACGGAGACAGTTC+CGG - chr5_4:12000321-12000340 Msa0837890:CDS 50.0%
GACTGTTGAAGTTCCGACGA+AGG - chr5_4:12000387-12000406 Msa0837890:CDS 50.0%
ACATCGGAAACTGCCTTCGT+CGG + chr5_4:12000403-12000422 None:intergenic 50.0%
! GTGAACATGACGGAGAGAGA+CGG - chr5_4:12000421-12000440 Msa0837890:CDS 50.0%
ACTTTCGGAGTTCCTTTCGC+TGG + chr5_4:12000526-12000545 None:intergenic 50.0%
TCCTTCTTGATCTGCTTCGG+CGG + chr5_4:12000556-12000575 None:intergenic 50.0%
TGCTTCATTTGCTTCGACGG+TGG - chr5_4:12000589-12000608 Msa0837890:CDS 50.0%
ATCGCTAAACCCTCACTCAC+CGG + chr5_4:12000636-12000655 None:intergenic 50.0%
! TAATGACCGGAGGGAGCATA+TGG - chr5_4:12001279-12001298 Msa0837890:CDS 50.0%
! TCTTTTTGCGCTGCTCAGGT+TGG - chr5_4:12001881-12001900 Msa0837890:CDS 50.0%
CTGATTGAGAACAGTGCCCA+GGG - chr5_4:12002051-12002070 Msa0837890:CDS 50.0%
GAACAGTGCCCAGGGAAATA+AGG - chr5_4:12002059-12002078 Msa0837890:CDS 50.0%
CCCTTCAGTCTTGGTACACA+TGG + chr5_4:12002172-12002191 None:intergenic 50.0%
AAGAAGCCTAAGGGACCTTC+AGG - chr5_4:12002495-12002514 Msa0837890:intron 50.0%
CTTTGCCTGAGTGCAAGAGA+TGG - chr5_4:12002535-12002554 Msa0837890:intron 50.0%
GTGCAAGAGATGGGCATCAA+AGG - chr5_4:12002545-12002564 Msa0837890:intron 50.0%
TTCGAATCAGGAGTTCTCCG+AGG - chr5_4:12003332-12003351 Msa0837890:intron 50.0%
GCAATCGCTTGCATTCATCC+TGG + chr5_4:12003462-12003481 None:intergenic 50.0%
TCGGGATAGAGCAAGTGAGA+AGG - chr5_4:12004012-12004031 Msa0837890:CDS 50.0%
CGGGATAGAGCAAGTGAGAA+GGG - chr5_4:12004013-12004032 Msa0837890:CDS 50.0%
! ACGCATCTAGGCACTGCTAA+TGG + chr5_4:12004198-12004217 None:intergenic 50.0%
ATTAGCAGTGCCTAGATGCG+TGG - chr5_4:12004197-12004216 Msa0837890:CDS 50.0%
TTAGCAGTGCCTAGATGCGT+GGG - chr5_4:12004198-12004217 Msa0837890:CDS 50.0%
TTGGGGTCAGAGTGTACATC+TGG + chr5_4:12004656-12004675 None:intergenic 50.0%
GAAGATGCTGGAGAGTCAGA+TGG - chr5_4:12004701-12004720 Msa0837890:intron 50.0%
! GGTGTCTTGAATGGTGTTGG+GGG - chr5_4:12004868-12004887 Msa0837890:CDS 50.0%
! ATGGTGTTGGGGGAAGAACA+CGG - chr5_4:12004878-12004897 Msa0837890:CDS 50.0%
GATCCATCTGGGAAGGTTCA+AGG - chr5_4:12005111-12005130 Msa0837890:intron 50.0%
GACTCAAACAGGACTTCTGG+TGG - chr5_4:12005612-12005631 Msa0837890:intron 50.0%
CTCAGAAACATGAGCCGATG+TGG + chr5_4:12005757-12005776 None:intergenic 50.0%
AGTTGCATTGCATGCTGGAG+GGG + chr5_4:12005829-12005848 None:intergenic 50.0%
GTAGTTGCATTGCATGCTGG+AGG + chr5_4:12005831-12005850 None:intergenic 50.0%
CACGTAGTTGCATTGCATGC+TGG + chr5_4:12005834-12005853 None:intergenic 50.0%
CAGCATGCAATGCAACTACG+TGG - chr5_4:12005832-12005851 Msa0837890:intron 50.0%
ATGCAATGCAACTACGTGGC+AGG - chr5_4:12005836-12005855 Msa0837890:intron 50.0%
TTTGGCAGAAGTGGAGGCAA+TGG - chr5_4:12005905-12005924 Msa0837890:intron 50.0%
! AATGGAATCGCTTGGTGGCT+TGG - chr5_4:12005923-12005942 Msa0837890:intron 50.0%
TCAAGTAACCAGTGGGAGTC+AGG - chr5_4:12006215-12006234 Msa0837890:intron 50.0%
AGTCATGCCCAATGTTGCAG+TGG + chr5_4:12006267-12006286 None:intergenic 50.0%
GCATGACTGTAGACACCACT+TGG - chr5_4:12006279-12006298 Msa0837890:CDS 50.0%
GTAGACACCACTTGGAGACT+TGG - chr5_4:12006287-12006306 Msa0837890:CDS 50.0%
CACCACTTGGAGACTTGGAT+TGG - chr5_4:12006292-12006311 Msa0837890:CDS 50.0%
GTTTGGCTATCCCCAAAGCT+TGG + chr5_4:12006437-12006456 None:intergenic 50.0%
! TTTTCTGTGCCCAGAGATCG+GGG - chr5_4:12006476-12006495 Msa0837890:CDS 50.0%
! GGGTTTTCCTGGTCATGGTA+GGG - chr5_4:12006496-12006515 Msa0837890:CDS 50.0%
GCTCTGCCTCTAACTAAACC+TGG + chr5_4:12006524-12006543 None:intergenic 50.0%
!! CCGCCATTTGGTGTTGGTAA+TGG - chr5_4:12006560-12006579 Msa0837890:CDS 50.0%
TCGTATAGACCTCTGCCCAA+AGG - chr5_4:12006587-12006606 Msa0837890:CDS 50.0%
CGTATAGACCTCTGCCCAAA+GGG - chr5_4:12006588-12006607 Msa0837890:CDS 50.0%
GACACTTGACTAGTACTGCC+AGG + chr5_4:12006773-12006792 None:intergenic 50.0%
GTTACAGTCGCCGGTGTTTC+CGG + chr5_4:12000310-12000329 None:intergenic 55.0%
GGAAACACCGGCGACTGTAA+CGG - chr5_4:12000309-12000328 Msa0837890:CDS 55.0%
ACTGTCTCCGTTACAGTCGC+CGG + chr5_4:12000319-12000338 None:intergenic 55.0%
GACTGTTCCGGTTGCCGTTA+CGG - chr5_4:12000345-12000364 Msa0837890:CDS 55.0%
! AACATGACGGAGAGAGACGG+CGG - chr5_4:12000424-12000443 Msa0837890:CDS 55.0%
GAGAGACGGCGGTTGTTGTA+CGG - chr5_4:12000435-12000454 Msa0837890:CDS 55.0%
TGTCATCGCCGAGAACAGTG+AGG - chr5_4:12000477-12000496 Msa0837890:CDS 55.0%
! TTCGGCGGAGGAGCTACTTT+CGG + chr5_4:12000541-12000560 None:intergenic 55.0%
TTCTTGATCTGCTTCGGCGG+AGG + chr5_4:12000553-12000572 None:intergenic 55.0%
TCCGCCGAAGCAGATCAAGA+AGG - chr5_4:12000552-12000571 Msa0837890:CDS 55.0%
CACGCCGGATGATACGCTTT+AGG + chr5_4:12000851-12000870 None:intergenic 55.0%
GCTGATTGAGAACAGTGCCC+AGG - chr5_4:12002050-12002069 Msa0837890:CDS 55.0%
TAGGAGCAGCAGCGCTCAAT+GGG + chr5_4:12002377-12002396 None:intergenic 55.0%
ATAGGAGCAGCAGCGCTCAA+TGG + chr5_4:12002378-12002397 None:intergenic 55.0%
! ATTGAGCGCTGCTGCTCCTA+TGG - chr5_4:12002377-12002396 Msa0837890:intron 55.0%
! TTGAGCGCTGCTGCTCCTAT+GGG - chr5_4:12002378-12002397 Msa0837890:intron 55.0%
AAGCCTAAGGGACCTTCAGG+CGG - chr5_4:12002498-12002517 Msa0837890:intron 55.0%
GATGCCCATCTCTTGCACTC+AGG + chr5_4:12002543-12002562 None:intergenic 55.0%
CTACTTGCGGCGAAGTCTGA+TGG - chr5_4:12002992-12003011 Msa0837890:intron 55.0%
! TGGTGTTGGGGGAAGAACAC+GGG - chr5_4:12004879-12004898 Msa0837890:CDS 55.0%
CTCAATTGGGTCACTGGCAG+TGG + chr5_4:12004911-12004930 None:intergenic 55.0%
GGTCCTTGAACCTTCCCAGA+TGG + chr5_4:12005117-12005136 None:intergenic 55.0%
!! AAAGCAGTCAGGATGGTGGG+AGG - chr5_4:12005337-12005356 Msa0837890:intron 55.0%
GGCAATCTTCGGCACAAAGC+TGG - chr5_4:12005691-12005710 Msa0837890:intron 55.0%
ATTGCATGCTGGAGGGGAAG+GGG + chr5_4:12005823-12005842 None:intergenic 55.0%
CATTGCATGCTGGAGGGGAA+GGG + chr5_4:12005824-12005843 None:intergenic 55.0%
GTGGAGGCAATGGAATCGCT+TGG - chr5_4:12005915-12005934 Msa0837890:intron 55.0%
GAGGCAATGGAATCGCTTGG+TGG - chr5_4:12005918-12005937 Msa0837890:intron 55.0%
TAACCAGTGGGAGTCAGGCT+CGG - chr5_4:12006220-12006239 Msa0837890:intron 55.0%
ATGCCCAATGTTGCAGTGGC+TGG + chr5_4:12006263-12006282 None:intergenic 55.0%
AGTACACACCTGGAATGGGG+AGG - chr5_4:12006317-12006336 Msa0837890:CDS 55.0%
ACACCTGGAATGGGGAGGAA+TGG - chr5_4:12006322-12006341 Msa0837890:CDS 55.0%
GATCCATTCCTCCCCATTCC+AGG + chr5_4:12006328-12006347 None:intergenic 55.0%
! GCAAACACGAGTTGGGGAGT+AGG - chr5_4:12006356-12006375 Msa0837890:CDS 55.0%
GAGTTGGGGAGTAGGACATG+CGG - chr5_4:12006364-12006383 Msa0837890:CDS 55.0%
CCAGGAAAACCCCGATCTCT+GGG + chr5_4:12006488-12006507 None:intergenic 55.0%
ACCAGGAAAACCCCGATCTC+TGG + chr5_4:12006489-12006508 None:intergenic 55.0%
! GATCGGGGTTTTCCTGGTCA+TGG - chr5_4:12006491-12006510 Msa0837890:CDS 55.0%
! GGGGTTTTCCTGGTCATGGT+AGG - chr5_4:12006495-12006514 Msa0837890:CDS 55.0%
TAGTTAGAGGCAGAGCTGCG+TGG - chr5_4:12006528-12006547 Msa0837890:CDS 55.0%
TGGAACAGGCAACCGCCATT+TGG - chr5_4:12006548-12006567 Msa0837890:CDS 55.0%
!! AGGCAACCGCCATTTGGTGT+TGG - chr5_4:12006554-12006573 Msa0837890:CDS 55.0%
GACAGTTCCGGCGACTGTTC+CGG - chr5_4:12000333-12000352 Msa0837890:CDS 60.0%
AACAGTCTTCGTCTCCGCCG+CGG + chr5_4:12000374-12000393 None:intergenic 60.0%
GTCTCGTTCTCTGCGATCGC+CGG - chr5_4:12000614-12000633 Msa0837890:CDS 60.0%
TCGTCTCGCTTGACACACGC+CGG + chr5_4:12000866-12000885 None:intergenic 60.0%
TCACCGCCTGAAGGTCCCTT+AGG + chr5_4:12002504-12002523 None:intergenic 60.0%
TTGCATGCTGGAGGGGAAGG+GGG + chr5_4:12005822-12005841 None:intergenic 60.0%
GCATTGCATGCTGGAGGGGA+AGG + chr5_4:12005825-12005844 None:intergenic 60.0%
TTTCCGAGCCTGACTCCCAC+TGG + chr5_4:12006226-12006245 None:intergenic 60.0%
! CCCAGAGATCGGGGTTTTCC+TGG - chr5_4:12006485-12006504 Msa0837890:CDS 60.0%
CCTGGTTCCCTACCATGACC+AGG + chr5_4:12006506-12006525 None:intergenic 60.0%
CCTGGTCATGGTAGGGAACC+AGG - chr5_4:12006503-12006522 Msa0837890:CDS 60.0%
ACGGCAACCGGAACAGTCGC+CGG + chr5_4:12000343-12000362 None:intergenic 65.0%
GCGGTCTCCGTAACGGCAAC+CGG + chr5_4:12000355-12000374 None:intergenic 65.0%
GGTTGCCGTTACGGAGACCG+CGG - chr5_4:12000354-12000373 Msa0837890:CDS 65.0%
AAGCGCGGTCGTCCAGCGAA+AGG - chr5_4:12000511-12000530 Msa0837890:CDS 65.0%
TCTGCGATCGCCGGTGAGTG+AGG - chr5_4:12000623-12000642 Msa0837890:CDS 65.0%
CTGCGATCGCCGGTGAGTGA+GGG - chr5_4:12000624-12000643 Msa0837890:CDS 65.0%
GGGACCTTCAGGCGGTGACA+CGG - chr5_4:12002506-12002525 Msa0837890:intron 65.0%
GGACCTTCAGGCGGTGACAC+GGG - chr5_4:12002507-12002526 Msa0837890:intron 65.0%
ACACCCGTGTCACCGCCTGA+AGG + chr5_4:12002513-12002532 None:intergenic 65.0%
ATGCTGGAGGGGAAGGGGGT+TGG + chr5_4:12005818-12005837 None:intergenic 65.0%
GAGGCAGAGCTGCGTGGAAC+AGG - chr5_4:12006534-12006553 Msa0837890:CDS 65.0%
ACTCGCTGCCCTTTGGGCAG+AGG + chr5_4:12006599-12006618 None:intergenic 65.0%
TGCCGTTACGGAGACCGCGG+CGG - chr5_4:12000357-12000376 Msa0837890:CDS 70.0%
CTCCGCCGCGGTCTCCGTAA+CGG + chr5_4:12000362-12000381 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11999919 12006992 11999919 ID=Msa0837890;Name=Msa0837890
chr5_4 mRNA 11999919 12006992 11999919 ID=Msa0837890-mRNA-1;Parent=Msa0837890;Name=Msa0837890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=373|0.88|0.8|1|0.88|0.8|10|310|1260
chr5_4 exon 11999919 12002078 11999919 ID=Msa0837890-mRNA-1:exon:5322;Parent=Msa0837890-mRNA-1
chr5_4 exon 12002177 12002271 12002177 ID=Msa0837890-mRNA-1:exon:5321;Parent=Msa0837890-mRNA-1
chr5_4 exon 12002819 12002934 12002819 ID=Msa0837890-mRNA-1:exon:5320;Parent=Msa0837890-mRNA-1
chr5_4 exon 12003258 12003308 12003258 ID=Msa0837890-mRNA-1:exon:5319;Parent=Msa0837890-mRNA-1
chr5_4 exon 12003389 12003448 12003389 ID=Msa0837890-mRNA-1:exon:5318;Parent=Msa0837890-mRNA-1
chr5_4 exon 12003558 12003685 12003558 ID=Msa0837890-mRNA-1:exon:5317;Parent=Msa0837890-mRNA-1
chr5_4 exon 12003780 12004650 12003780 ID=Msa0837890-mRNA-1:exon:5316;Parent=Msa0837890-mRNA-1
chr5_4 exon 12004825 12005012 12004825 ID=Msa0837890-mRNA-1:exon:5315;Parent=Msa0837890-mRNA-1
chr5_4 exon 12005991 12006070 12005991 ID=Msa0837890-mRNA-1:exon:5314;Parent=Msa0837890-mRNA-1
chr5_4 exon 12006276 12006992 12006276 ID=Msa0837890-mRNA-1:exon:5313;Parent=Msa0837890-mRNA-1
chr5_4 five_prime_UTR 12006620 12006992 12006620 ID=Msa0837890-mRNA-1:five_prime_utr;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12006276 12006619 12006276 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12005991 12006070 12005991 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12004825 12005012 12004825 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12003780 12004650 12003780 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12003558 12003685 12003558 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12003389 12003448 12003389 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12003258 12003308 12003258 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12002819 12002934 12002819 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12002177 12002271 12002177 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 CDS 12000229 12002078 12000229 ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4 three_prime_UTR 11999919 12000228 11999919 ID=Msa0837890-mRNA-1:three_prime_utr;Parent=Msa0837890-mRNA-1
Gene Sequence

>Msa0837890

ATGGAACAATCAAAGCCGGAAACACCGGCGACTGTAACGGAGACAGTTCCGGCGACTGTTCCGGTTGCCGTTACGGAGACCGCGGCGGAGACGAAGACTGTTGAAGTTCCGACGAAGGCAGTTTCCGATGTGAACATGACGGAGAGAGACGGCGGTTGTTGTACGGCGCCGAAAGTAGTTCTCGCTGTCATCGCCGAGAACAGTGAGGTTATGAAGAAGAAGCGCGGTCGTCCAGCGAAAGGAACTCCGAAAGTAGCTCCTCCGCCGAAGCAGATCAAGAAGGAAGATGAAGATGTTTGCTTCATTTGCTTCGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCGTATCATCCGGCGTGTGTCAAGCGAGACGAAGCGTTCTTCCGTTCAAAAGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACATGTACGTATTCTTTGTGCAAGGGGTGTATAAAAAATGCGGATTTTGTTTCTGTTAGAGGAAATAAAGGTTTGTGTGGAATTTGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGACGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATTATTGAAAGAGAATCTATCTTTAACGTTTGATGAGCTCCTTCGAGCTAAAAACCCATTGAGCGCTGCTGCTCCTATGGGTCAAACTTCCCACAAACTTTACCATCTTAAAGATGAAAAAGGTTCTGGTTTTGAGAACTCCTGTGTAGATATAGAATCAAATAATTTGAAAAACAAGAAGCCTAAGGGACCTTCAGGCGGTGACACGGGTGTGTCTTTGCCTGAGTGCAAGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCACATATGAAAAATGGTGATACGTCTATACTTTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAAAGAAAAACAATCTGCGTGACCCTCAACAGAAATCTCTAATTGTTTGCGACTCTAGACTAGTAAATTTGTTTGGAAAAGCTCGTCTTGGATACATTGAAATGCTAATGCTCCTTGAACCCCACTTTCTTATAAAAGAAAATACCCCTGCAGAAAATAATTTTGGAGCAGGAATTAGTGATGCTGTTGCAAATGGAAAGGAGGCTATTGACAGTAACAATAAACAGTCAGTATTAGTCAATGATAAGAGATGCACAAGTAAAAAGGCTGACATGCCTGTGCCACAAAATAATCAAGATGCATACGCGTCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATAGTGAAAGGATTCACGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACGACTGACATTAAGCTTGAAATTTTAAATTTAAACCGGAAGGAGGTCATATCGATAGACGAGATTTCGAATCAGGAGTTCTCCGAGGATGAATGCAAGCGATTGCGTCAAAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCGCTCACATTTCAAGAAATTAGAGTCAATGATTTATTGGAAGCTGAGAAATTGCGGCTTAATAATCTTCGGGATAGAGCAAGTGAGAAGGGACACAGAAAAGAATATCCTTTACCATTTACTTCTTTCCTAAATATGCTAAACTGTGGACTGCATGAAGTTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCTGGAGAGTCAGATGGCAATAAACAAGATGGCAATATACCTATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGAAGAACACGGGACTTGACCACTGCCAGTGACCCAATTGAGAATACATGCTTACTAAAGAAGCATATCAACCCAAACGAAACTCCTATTGATGATAGTGCTGATGTTGTTACGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCATCTCCACTTATCTCTACAGGGATTGCGCAGCCATTTGATGATTTTATGAATGATAGATCATGGCATTATCAGGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAAAGTATGGAGGATAGATGAGAAACAAGTAAACTCTATATTGTTAACTGATGCACTTAATGGGAAGTGCTCCAAAAATGTGCCATTGCGGAACAACAGCCTATTGCTCTCTTTAGGAGCCAATGTTGCATTGGATGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAACAACGAATGAAATTTCTGCAGATAGCCGAATCATAGAACAGATCAGAGAACAAAAAGTGGATGATACTTCGACCCAGTCTAATGGTAAAGATGAATCCGTTAGGAGCAATGGATGGCATGACCAGTCACATGTACACACTTCTATACAACCAACTGCCTTTTCTGAGAATTTGAATGAGAATCACACCAACAAATTAAGGGAGGATCATGGGATTGAAAAAAACTCTGAAGATAATGGAAATCATGACTCAAACAGGACTTCTGGTGGTCAGAGTAATAGTGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGCACAAAGCTGGAGAAACCATAATGTAAATACTTCTTCCAATTGCTTTGATACCACATCGGCTCATGTTTCTGAGACAAGAACATCACCACTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCCCCTCCAGCATGCAATGCAACTACGTGGCAGGCTATTATAGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAATCGCTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGTGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGTCCAATGCTTGATGCAGGTAAAAGCGATGCATTGAGCTCCACATGTGATTTACAGTTACTATCTCAATCTACAGCAGCAGAGGAACCGTTACAACAAGCAGATGTCAATCATCATCATCAAAGAATATCAGAGGAGCTTTCCTCGAGAAATTCTAAAGTTGACGTGGGTTCAAAGAACATATGTGTTTCAAGTAACCAGTGGGAGTCAGGCTCGGAAAATTCTTCTATTTTTCCAGCCACTGCAACATTGGGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAAAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACACGAGTTGGGGAGTAGGACATGCGGCAGTGAATGAGAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAAACAAGATACGGAAGTGATCGATTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAGCTGCGTGGAACAGGCAACCGCCATTTGGTGTTGGTAATGGAGGCTCGTATAGACCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAGGAAAGGGGCATCCTGTGAATACTTCCACCCATGA
Protein sequence

>Msa0837890

MEQSKPETPATVTETVPATVPVAVTETAAETKTVEVPTKAVSDVNMTERDGGCCTAPKVVLAVIAENSEVMKKKRGRPAKGTPKVAPPPKQIKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIKNADFVSVRGNKGLCGICKKTIMLIENSAQGNKEMCDVDFDDKSSWEYLFKVYWTLLKENLSLTFDELLRAKNPLSAAAPMGQTSHKLYHLKDEKGSGFENSCVDIESNNLKNKKPKGPSGGDTGVSLPECKRWASKELLEFVSHMKNGDTSILSQFDVQNLLLEYVKKNNLRDPQQKSLIVCDSRLVNLFGKARLGYIEMLMLLEPHFLIKENTPAENNFGAGISDAVANGKEAIDSNNKQSVLVNDKRCTSKKADMPVPQNNQDAYASINAHNINLIYLRRSLMESLTDDSERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKEYPLPFTSFLNMLNCGLHEVPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLTTASDPIENTCLLKKHINPNETPIDDSADVVTKSEVSSVAVDISSPLISTGIAQPFDDFMNDRSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLKVWRIDEKQVNSILLTDALNGKCSKNVPLRNNSLLLSLGANVALDDKESSQDGGRNSTTNEISADSRIIEQIREQKVDDTSTQSNGKDESVRSNGWHDQSHVHTSIQPTAFSENLNENHTNKLREDHGIEKNSEDNGNHDSNRTSGGQSNSGQNHQKQSDSEDNSGQSSAQSWRNHNVNTSSNCFDTTSAHVSETRTSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPMLDAGKSDALSSTCDLQLLSQSTAAEEPLQQADVNHHHQRISEELSSRNSKVDVGSKNICVSSNQWESGSENSSIFPATATLGMTVDTTWRLGLESTHLEWGGMDQRNANTSWGVGHAAVNENRSSNSCTSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREPGLVRGRAAWNRQPPFGVGNGGSYRPLPKGQRVCKFYESGYCRKGASCEYFHP*