AlfalfaGEDB | Msa0837890

M. sativa cultivar zhongmu-4 / Msa0837890

KEGG: -
GO: -
PFAM: PF02201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837890	XP_003612119.2	96.367	1266	39	2	1	1260	1	1265	0.0	2522

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837890	sp\|Q9SD34\|C3H44_ARATH	48.813	758	324	14	64	800	71	785	0.0	663

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837890	G7KGD4	96.367	1266	39	2	1	1260	1	1265	0.0	2522

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TFs/TRs:

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Gene ID	Type	Classification
Msa0837890	TR	SWI/SNF-BAF60b

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023330	Msa0837890	0.808978	2.374198e-50	-8.615850e-47
Msa0028620	Msa0837890	0.812137	4.932284e-51	-8.615850e-47
Msa0032470	Msa0837890	0.821696	3.519403e-53	-8.615850e-47
Msa0043980	Msa0837890	0.839379	1.641495e-57	-8.615850e-47
Msa0083280	Msa0837890	0.813280	2.771898e-51	-8.615850e-47
Msa0116080	Msa0837890	0.818879	1.556944e-52	-8.615850e-47
Msa0117520	Msa0837890	0.804776	1.836743e-49	-8.615850e-47
Msa0126190	Msa0837890	0.825128	5.549101e-54	-8.615850e-47
Msa0138020	Msa0837890	0.809478	1.854970e-50	-8.615850e-47
Msa0148080	Msa0837890	0.839195	1.832100e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837890	MtrunA17_Chr5g0405061	97.569	617	15	0	644	1260	23	639	0.0	1249
Msa0837890	MtrunA17_Chr5g0405071	97.504	601	15	0	1	601	1	601	0.0	1222
Msa0837890	MtrunA17_Chr3g0145201	55.439	478	194	7	72	537	207	677	3.65e-157	497
Msa0837890	MtrunA17_Chr3g0145241	54.791	407	170	4	207	601	5	409	2.18e-123	387
Msa0837890	MtrunA17_Chr5g0405031	65.236	233	71	6	60	287	33	260	6.70e-91	309
Msa0837890	MtrunA17_Chr5g0405031	40.873	504	196	11	645	1104	249	694	2.54e-81	282
Msa0837890	MtrunA17_Chr3g0109611	30.403	546	320	15	97	610	15	532	6.06e-61	218
Msa0837890	MtrunA17_Chr3g0109631	27.386	482	314	8	97	561	15	477	1.51e-51	189
Msa0837890	MtrunA17_Chr3g0109641	28.645	583	328	18	97	609	15	579	1.18e-50	194
Msa0837890	MtrunA17_Chr6g0477441	33.951	324	175	11	303	615	39	334	2.31e-35	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837890	AT3G51120.1	49.607	764	322	15	64	800	71	798	0.0	680
Msa0837890	AT2G16485.1	44.888	802	351	17	96	816	598	1389	0.0	628
Msa0837890	AT2G16485.2	45.178	788	354	17	96	816	598	1374	0.0	622
Msa0837890	AT2G18090.2	52.778	324	143	3	86	399	68	391	3.58e-114	376
Msa0837890	AT2G18090.2	34.930	355	211	9	723	1068	448	791	3.33e-37	152
Msa0837890	AT2G18090.1	52.778	324	143	3	86	399	68	391	7.61e-114	376
Msa0837890	AT2G18090.1	33.422	377	216	9	723	1068	448	820	2.38e-36	149
Msa0837890	AT5G63700.1	27.798	554	317	15	100	598	25	550	2.34e-56	207
Msa0837890	AT5G63700.2	27.308	520	301	13	100	567	25	519	5.20e-55	201
Msa0837890	AT5G08430.2	33.670	297	169	9	303	598	32	301	1.05e-32	133

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Find 321 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTGGCACATGGAAA+TGG	0.427825	5_4:+12006736	None:intergenic
AAACTGAAAAGTGAAAACCC+TGG	0.775431	5_4:+12006723	None:intergenic
AAAGAAAGCAGTCAGGATGG+TGG	0.617264	5_4:-12001556	Msa0837890:CDS
AAAGCAGTCAGGATGGTGGG+AGG	0.690722	5_4:-12001552	Msa0837890:CDS
AAAGTGAAAACCCTGGCACA+TGG	0.597186	5_4:+12006730	None:intergenic
AAAGTGGGTACTGTAGGAAA+GGG	0.516641	5_4:-12000256	Msa0837890:CDS
AAATCAAATCCCAGCTTAAG+TGG	0.540274	5_4:+12001100	None:intergenic
AAATTCTCAGAAAAGGCAGT+TGG	0.530404	5_4:+12001373	None:intergenic
AACAAATTAAGGGAGGATCA+TGG	0.508647	5_4:-12001334	Msa0837890:CDS
AACAGCCTATTGCTCTCTTT+AGG	0.421297	5_4:-12001601	Msa0837890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTATGGAACAATCAAAGC+CGG	-	chr5_4:12000288-12000307	Msa0837890:CDS	30.0%
TGTTTGTAATAGTGACACAA+GGG	+	chr5_4:12001153-12001172	None:intergenic	30.0%
TTGTTTGTAATAGTGACACA+AGG	+	chr5_4:12001154-12001173	None:intergenic	30.0%
TCTGATATGTATTATAGACC+AGG	+	chr5_4:12001213-12001232	None:intergenic	30.0%
CACTTGAAAATCATGGTTAA+TGG	+	chr5_4:12001397-12001416	None:intergenic	30.0%
CTAATCGGCAAATTAACAAA+TGG	+	chr5_4:12001755-12001774	None:intergenic	30.0%
GTTTCTGTTAGAGGAAATAA+AGG	-	chr5_4:12001997-12002016	Msa0837890:CDS	30.0%
GCAAATGAAATGATACATGA+TGG	-	chr5_4:12002206-12002225	Msa0837890:CDS	30.0%
CTTAAAGATGAAAAAGGTTC+TGG	-	chr5_4:12002426-12002445	Msa0837890:intron	30.0%
TTTGAAAAACAAGAAGCCTA+AGG	-	chr5_4:12002485-12002504	Msa0837890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	11999919	12006992	11999919	ID=Msa0837890;Name=Msa0837890
chr5_4	mRNA	11999919	12006992	11999919	ID=Msa0837890-mRNA-1;Parent=Msa0837890;Name=Msa0837890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=373\|0.88\|0.8\|1\|0.88\|0.8\|10\|310\|1260
chr5_4	exon	11999919	12002078	11999919	ID=Msa0837890-mRNA-1:exon:5322;Parent=Msa0837890-mRNA-1
chr5_4	exon	12002177	12002271	12002177	ID=Msa0837890-mRNA-1:exon:5321;Parent=Msa0837890-mRNA-1
chr5_4	exon	12002819	12002934	12002819	ID=Msa0837890-mRNA-1:exon:5320;Parent=Msa0837890-mRNA-1
chr5_4	exon	12003258	12003308	12003258	ID=Msa0837890-mRNA-1:exon:5319;Parent=Msa0837890-mRNA-1
chr5_4	exon	12003389	12003448	12003389	ID=Msa0837890-mRNA-1:exon:5318;Parent=Msa0837890-mRNA-1
chr5_4	exon	12003558	12003685	12003558	ID=Msa0837890-mRNA-1:exon:5317;Parent=Msa0837890-mRNA-1
chr5_4	exon	12003780	12004650	12003780	ID=Msa0837890-mRNA-1:exon:5316;Parent=Msa0837890-mRNA-1
chr5_4	exon	12004825	12005012	12004825	ID=Msa0837890-mRNA-1:exon:5315;Parent=Msa0837890-mRNA-1
chr5_4	exon	12005991	12006070	12005991	ID=Msa0837890-mRNA-1:exon:5314;Parent=Msa0837890-mRNA-1
chr5_4	exon	12006276	12006992	12006276	ID=Msa0837890-mRNA-1:exon:5313;Parent=Msa0837890-mRNA-1
chr5_4	five_prime_UTR	12006620	12006992	12006620	ID=Msa0837890-mRNA-1:five_prime_utr;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12006276	12006619	12006276	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12005991	12006070	12005991	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12004825	12005012	12004825	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12003780	12004650	12003780	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12003558	12003685	12003558	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12003389	12003448	12003389	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12003258	12003308	12003258	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12002819	12002934	12002819	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12002177	12002271	12002177	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	CDS	12000229	12002078	12000229	ID=Msa0837890-mRNA-1:cds;Parent=Msa0837890-mRNA-1
chr5_4	three_prime_UTR	11999919	12000228	11999919	ID=Msa0837890-mRNA-1:three_prime_utr;Parent=Msa0837890-mRNA-1

Gene Sequence

>Msa0837890

ATGGAACAATCAAAGCCGGAAACACCGGCGACTGTAACGGAGACAGTTCCGGCGACTGTTCCGGTTGCCGTTACGGAGACCGCGGCGGAGACGAAGACTGTTGAAGTTCCGACGAAGGCAGTTTCCGATGTGAACATGACGGAGAGAGACGGCGGTTGTTGTACGGCGCCGAAAGTAGTTCTCGCTGTCATCGCCGAGAACAGTGAGGTTATGAAGAAGAAGCGCGGTCGTCCAGCGAAAGGAACTCCGAAAGTAGCTCCTCCGCCGAAGCAGATCAAGAAGGAAGATGAAGATGTTTGCTTCATTTGCTTCGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCGTATCATCCGGCGTGTGTCAAGCGAGACGAAGCGTTCTTCCGTTCAAAAGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACATGTACGTATTCTTTGTGCAAGGGGTGTATAAAAAATGCGGATTTTGTTTCTGTTAGAGGAAATAAAGGTTTGTGTGGAATTTGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGACGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATTATTGAAAGAGAATCTATCTTTAACGTTTGATGAGCTCCTTCGAGCTAAAAACCCATTGAGCGCTGCTGCTCCTATGGGTCAAACTTCCCACAAACTTTACCATCTTAAAGATGAAAAAGGTTCTGGTTTTGAGAACTCCTGTGTAGATATAGAATCAAATAATTTGAAAAACAAGAAGCCTAAGGGACCTTCAGGCGGTGACACGGGTGTGTCTTTGCCTGAGTGCAAGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCACATATGAAAAATGGTGATACGTCTATACTTTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAAAGAAAAACAATCTGCGTGACCCTCAACAGAAATCTCTAATTGTTTGCGACTCTAGACTAGTAAATTTGTTTGGAAAAGCTCGTCTTGGATACATTGAAATGCTAATGCTCCTTGAACCCCACTTTCTTATAAAAGAAAATACCCCTGCAGAAAATAATTTTGGAGCAGGAATTAGTGATGCTGTTGCAAATGGAAAGGAGGCTATTGACAGTAACAATAAACAGTCAGTATTAGTCAATGATAAGAGATGCACAAGTAAAAAGGCTGACATGCCTGTGCCACAAAATAATCAAGATGCATACGCGTCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATAGTGAAAGGATTCACGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACGACTGACATTAAGCTTGAAATTTTAAATTTAAACCGGAAGGAGGTCATATCGATAGACGAGATTTCGAATCAGGAGTTCTCCGAGGATGAATGCAAGCGATTGCGTCAAAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCGCTCACATTTCAAGAAATTAGAGTCAATGATTTATTGGAAGCTGAGAAATTGCGGCTTAATAATCTTCGGGATAGAGCAAGTGAGAAGGGACACAGAAAAGAATATCCTTTACCATTTACTTCTTTCCTAAATATGCTAAACTGTGGACTGCATGAAGTTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCTGGAGAGTCAGATGGCAATAAACAAGATGGCAATATACCTATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGAAGAACACGGGACTTGACCACTGCCAGTGACCCAATTGAGAATACATGCTTACTAAAGAAGCATATCAACCCAAACGAAACTCCTATTGATGATAGTGCTGATGTTGTTACGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCATCTCCACTTATCTCTACAGGGATTGCGCAGCCATTTGATGATTTTATGAATGATAGATCATGGCATTATCAGGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAAAGTATGGAGGATAGATGAGAAACAAGTAAACTCTATATTGTTAACTGATGCACTTAATGGGAAGTGCTCCAAAAATGTGCCATTGCGGAACAACAGCCTATTGCTCTCTTTAGGAGCCAATGTTGCATTGGATGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAACAACGAATGAAATTTCTGCAGATAGCCGAATCATAGAACAGATCAGAGAACAAAAAGTGGATGATACTTCGACCCAGTCTAATGGTAAAGATGAATCCGTTAGGAGCAATGGATGGCATGACCAGTCACATGTACACACTTCTATACAACCAACTGCCTTTTCTGAGAATTTGAATGAGAATCACACCAACAAATTAAGGGAGGATCATGGGATTGAAAAAAACTCTGAAGATAATGGAAATCATGACTCAAACAGGACTTCTGGTGGTCAGAGTAATAGTGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGCACAAAGCTGGAGAAACCATAATGTAAATACTTCTTCCAATTGCTTTGATACCACATCGGCTCATGTTTCTGAGACAAGAACATCACCACTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCCCCTCCAGCATGCAATGCAACTACGTGGCAGGCTATTATAGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAATCGCTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGTGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGTCCAATGCTTGATGCAGGTAAAAGCGATGCATTGAGCTCCACATGTGATTTACAGTTACTATCTCAATCTACAGCAGCAGAGGAACCGTTACAACAAGCAGATGTCAATCATCATCATCAAAGAATATCAGAGGAGCTTTCCTCGAGAAATTCTAAAGTTGACGTGGGTTCAAAGAACATATGTGTTTCAAGTAACCAGTGGGAGTCAGGCTCGGAAAATTCTTCTATTTTTCCAGCCACTGCAACATTGGGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAAAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACACGAGTTGGGGAGTAGGACATGCGGCAGTGAATGAGAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAAACAAGATACGGAAGTGATCGATTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAGCTGCGTGGAACAGGCAACCGCCATTTGGTGTTGGTAATGGAGGCTCGTATAGACCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAGGAAAGGGGCATCCTGTGAATACTTCCACCCATGA

Protein sequence

>Msa0837890

MEQSKPETPATVTETVPATVPVAVTETAAETKTVEVPTKAVSDVNMTERDGGCCTAPKVVLAVIAENSEVMKKKRGRPAKGTPKVAPPPKQIKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIKNADFVSVRGNKGLCGICKKTIMLIENSAQGNKEMCDVDFDDKSSWEYLFKVYWTLLKENLSLTFDELLRAKNPLSAAAPMGQTSHKLYHLKDEKGSGFENSCVDIESNNLKNKKPKGPSGGDTGVSLPECKRWASKELLEFVSHMKNGDTSILSQFDVQNLLLEYVKKNNLRDPQQKSLIVCDSRLVNLFGKARLGYIEMLMLLEPHFLIKENTPAENNFGAGISDAVANGKEAIDSNNKQSVLVNDKRCTSKKADMPVPQNNQDAYASINAHNINLIYLRRSLMESLTDDSERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKEYPLPFTSFLNMLNCGLHEVPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLTTASDPIENTCLLKKHINPNETPIDDSADVVTKSEVSSVAVDISSPLISTGIAQPFDDFMNDRSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLKVWRIDEKQVNSILLTDALNGKCSKNVPLRNNSLLLSLGANVALDDKESSQDGGRNSTTNEISADSRIIEQIREQKVDDTSTQSNGKDESVRSNGWHDQSHVHTSIQPTAFSENLNENHTNKLREDHGIEKNSEDNGNHDSNRTSGGQSNSGQNHQKQSDSEDNSGQSSAQSWRNHNVNTSSNCFDTTSAHVSETRTSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPMLDAGKSDALSSTCDLQLLSQSTAAEEPLQQADVNHHHQRISEELSSRNSKVDVGSKNICVSSNQWESGSENSSIFPATATLGMTVDTTWRLGLESTHLEWGGMDQRNANTSWGVGHAAVNENRSSNSCTSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREPGLVRGRAAWNRQPPFGVGNGGSYRPLPKGQRVCKFYESGYCRKGASCEYFHP*