AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0779690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779690 MtrunA17_Chr5g0444691 94.179 773 20 4 79 848 1 751 0.0 1435
Msa0779690 MtrunA17_Chr5g0444681 92.157 51 4 0 14 64 91 141 7.06e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779690 AT5G55100.2 39.545 880 354 26 14 848 93 839 2.64e-147 455
Msa0779690 AT5G55100.1 39.545 880 354 26 14 848 93 839 5.36e-147 454
Msa0779690 AT5G55100.10 37.037 783 324 26 106 848 1 654 1.31e-101 329
Msa0779690 AT5G55100.3 37.037 783 324 26 106 848 1 654 1.31e-101 329
Msa0779690 AT5G55100.5 37.037 783 324 26 106 848 1 654 1.31e-101 329
Msa0779690 AT5G55100.6 37.037 783 324 26 106 848 1 654 1.31e-101 329
Msa0779690 AT5G55100.11 37.037 783 324 26 106 848 1 654 1.31e-101 329
Msa0779690 AT5G55100.7 36.829 782 327 25 106 848 1 654 1.86e-101 329
Msa0779690 AT5G55100.4 36.829 782 327 25 106 848 1 654 1.86e-101 329
Msa0779690 AT5G55100.8 36.829 782 327 25 106 848 1 654 1.86e-101 329
Msa0779690 AT5G55100.9 36.829 782 327 25 106 848 1 654 1.86e-101 329
Msa0779690 AT5G55100.12 36.829 782 327 25 106 848 1 654 1.86e-101 329

Find 254 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACATGGCTCTAATTT+TGG 0.118147 5_2:+61041913 None:intergenic
TTCCTCCTCTTCATGTTTAC+TGG 0.123621 5_2:+61042639 None:intergenic
CCACCGAGCTCTGGACTTTC+AGG 0.131202 5_2:-61042862 Msa0779690:CDS
TGTCAATTAAATTTAGATTT+TGG 0.133209 5_2:-61047225 Msa0779690:five_prime_UTR
AATATACTTTATCAAAATTT+TGG 0.141828 5_2:+61047016 None:intergenic
AGATGACTACTGGCAATTTA+AGG 0.184464 5_2:-61043344 Msa0779690:CDS
CTAAATTTAATTGACATATA+TGG 0.197081 5_2:+61047232 None:intergenic
TCATCTTGAATTTCTCTTTC+CGG 0.219255 5_2:+61043361 None:intergenic
AGTCATGACTCAGTGATTTA+AGG 0.237448 5_2:-61046662 Msa0779690:five_prime_UTR
ACAGGAGTTGCCTCAGATTC+AGG 0.248437 5_2:-61044829 Msa0779690:CDS
AACCAAACAGAACTGTTATA+AGG 0.250467 5_2:+61046953 None:intergenic
TATATCTTTCGGTGCAATTT+TGG 0.268677 5_2:-61046328 Msa0779690:five_prime_UTR
ACAACAATCTTTACATTTGC+AGG 0.268945 5_2:-61046207 Msa0779690:five_prime_UTR
TCTTTGCTTGGATCTGTCTA+TGG 0.271680 5_2:-61045099 Msa0779690:CDS
TTCAAATGGTTCTCATCATT+TGG 0.278271 5_2:-61046360 Msa0779690:five_prime_UTR
GATCCGCTGGAGTGTGCTTC+TGG 0.286817 5_2:+61043418 None:intergenic
AGTTCATCGAACCTATTCTT+TGG 0.291487 5_2:-61046449 Msa0779690:five_prime_UTR
TGAGTCTGTTCTTGCTGAAC+AGG 0.291601 5_2:-61044668 Msa0779690:CDS
ACCTCGTGAATAAGGCATTA+AGG 0.293818 5_2:-61047336 Msa0779690:five_prime_UTR
CAAGGAGATAATCCAACATT+TGG 0.295832 5_2:-61045267 Msa0779690:CDS
AGAAATGCTTCCATCCTTCT+TGG 0.299556 5_2:+61044945 None:intergenic
TGAATAATTTAGTTGGGTTT+TGG 0.310977 5_2:-61046861 Msa0779690:five_prime_UTR
TAGCATTTACCTCGTGAATA+AGG 0.314159 5_2:-61047344 Msa0779690:five_prime_UTR
GTTTGTTTAGATAATGATTC+AGG 0.315306 5_2:-61046014 Msa0779690:intron
TTATTTAAGAGTACAGATTC+TGG 0.315715 5_2:-61046567 Msa0779690:five_prime_UTR
CACATTAAAATGCAAGCTTC+AGG 0.318323 5_2:-61046900 Msa0779690:five_prime_UTR
ACCTCAAAATCAGTTTAGTT+TGG 0.326644 5_2:-61046500 Msa0779690:five_prime_UTR
TCATGTGTGGTTAAAATTCC+TGG 0.328590 5_2:-61047534 Msa0779690:five_prime_UTR
GACTGATTCCGCTTTATAAC+AGG 0.329088 5_2:+61044892 None:intergenic
GCGAGGTTGGGCGGGCTAGC+AGG 0.329386 5_2:-61042018 Msa0779690:CDS
ACTTGTTCATGCTCGTTTGT+AGG 0.333387 5_2:+61046386 None:intergenic
CTAAGGGTGTGTTTGTTTCA+AGG 0.336794 5_2:+61047408 None:intergenic
AGTTTGAGATTGGCTGTCTT+TGG 0.338019 5_2:+61043299 None:intergenic
CTATTCTTCAGGCAGCTACT+AGG 0.346882 5_2:-61043245 Msa0779690:CDS
GGACTAATTGATATATCTTT+CGG 0.349246 5_2:-61046339 Msa0779690:five_prime_UTR
AGAGGCAGAGTTGGAGGAGG+GGG 0.351243 5_2:-61042071 Msa0779690:CDS
TGAAGTAAGCTTTCTGGTAC+TGG 0.351760 5_2:+61045882 None:intergenic
CGATTAGAAGGCAGAAGAAA+TGG 0.352536 5_2:+61044625 None:intergenic
ATCTGATGTAGCTTCTCGTT+TGG 0.354189 5_2:+61045357 None:intergenic
TTCAAGTGCAGTTCATAGTT+TGG 0.356004 5_2:+61047054 None:intergenic
TCAGAAACATTAGTTACTTC+AGG 0.356338 5_2:+61041947 None:intergenic
TAAATTTAATTGACATATAT+GGG 0.356932 5_2:+61047233 None:intergenic
AGATTATGAAGTAAGCTTTC+TGG 0.357635 5_2:+61045876 None:intergenic
GTTCATCGAACCTATTCTTT+GGG 0.358624 5_2:-61046448 Msa0779690:five_prime_UTR
TTCCCAGGAATATTATTTCC+AGG 0.366931 5_2:-61047764 None:intergenic
CTCTCAGAATAATTTCTGAT+TGG 0.369800 5_2:+61045295 None:intergenic
GTGAATAAGGCATTAAGGTT+TGG 0.373474 5_2:-61047331 Msa0779690:five_prime_UTR
TCTGCAATAGCCTTGGCAAC+TGG 0.375868 5_2:+61043054 None:intergenic
GGCAGCCGCAGCTATTCTTC+AGG 0.380880 5_2:-61043256 Msa0779690:CDS
GCTGCTACTTCTGCATCATC+AGG 0.381682 5_2:-61045000 Msa0779690:CDS
TAGTTCAATCTTAGATGTAC+TGG 0.382480 5_2:+61044771 None:intergenic
CAGCTACTAGGGGTATTAAA+AGG 0.387895 5_2:-61043233 Msa0779690:CDS
GACCCCTGAGTTTCAATTGT+AGG 0.388550 5_2:-61046743 Msa0779690:five_prime_UTR
CCTGCGTTATGTGCTTTAGT+TGG 0.389540 5_2:-61047295 Msa0779690:five_prime_UTR
TCTTGTGAACCATGAACAAT+AGG 0.389984 5_2:+61047084 None:intergenic
AGAAAGCTTACTTCATAATC+TGG 0.393618 5_2:-61045874 Msa0779690:intron
GCCTCAGATTCAGGGTCTAA+TGG 0.400930 5_2:-61044820 Msa0779690:CDS
AAGAAAATGAAAGTCATTCC+TGG 0.404090 5_2:+61047746 None:intergenic
AAGGTTTATAATGTTATTCT+CGG 0.404688 5_2:+61047427 None:intergenic
ACAAGTAGGCCTATTGTTCA+TGG 0.404904 5_2:-61047093 Msa0779690:five_prime_UTR
CCTATTCTTTGGGTTCAGTT+TGG 0.405809 5_2:-61046438 Msa0779690:five_prime_UTR
TCTTTCCGGTCCATGTCATT+TGG 0.407743 5_2:+61043375 None:intergenic
TCTGTTGAGCCACCGAGCTC+TGG 0.414659 5_2:-61042871 Msa0779690:CDS
ATGCAGACAGTGACAGAAAC+AGG 0.419685 5_2:-61042504 Msa0779690:CDS
AGTGGTAATGGTCAAGGCCT+TGG 0.420560 5_2:-61043180 Msa0779690:CDS
GTGGCACCTGAAATTGTATA+TGG 0.421468 5_2:+61046830 None:intergenic
CAAAATTAGAGCCATGTTGA+TGG 0.424496 5_2:-61041912 Msa0779690:CDS
ACCAAACAGAACTGTTATAA+GGG 0.426719 5_2:+61046954 None:intergenic
CCAACGACAAGTATTCTCAT+AGG 0.427441 5_2:-61042453 Msa0779690:CDS
CAAATAAATATGAGTGGTAG+TGG 0.428718 5_2:-61047638 Msa0779690:five_prime_UTR
TCTGAGTTATCAGTATTGAA+TGG 0.431503 5_2:+61042784 None:intergenic
TTGGCTGCTGGCTATTAAGT+TGG 0.432574 5_2:-61046309 Msa0779690:five_prime_UTR
CCTCTTTATCATTATACTGA+TGG 0.432838 5_2:-61047189 Msa0779690:five_prime_UTR
GTGTGTTGAATAATTTAGTT+GGG 0.433314 5_2:-61046867 Msa0779690:five_prime_UTR
ACCCTTATAACAGTTCTGTT+TGG 0.433390 5_2:-61046955 Msa0779690:five_prime_UTR
CTTTCTGGTACTGGAAAGTT+GGG 0.433946 5_2:+61045891 None:intergenic
GGAGGTGCATTGTCTTTGCT+TGG 0.435508 5_2:-61045111 Msa0779690:CDS
TCAGGTGCAGTGAGTTCATC+AGG 0.441989 5_2:-61045996 Msa0779690:CDS
TGTGTGTTGAATAATTTAGT+TGG 0.443903 5_2:-61046868 Msa0779690:five_prime_UTR
TAAGTATGATATCGATTAGA+AGG 0.444515 5_2:+61044613 None:intergenic
AGAGAGGCAGAGTTGGAGGA+GGG 0.446411 5_2:-61042073 Msa0779690:CDS
AAACGATGCAGGCTCAACTT+TGG 0.446964 5_2:-61045166 Msa0779690:CDS
GCTTTCTGGTACTGGAAAGT+TGG 0.447870 5_2:+61045890 None:intergenic
AAGGAGATAATCCAACATTT+GGG 0.448085 5_2:-61045266 Msa0779690:CDS
TGCTGAAAGAGAGGCAGAGT+TGG 0.452101 5_2:-61042080 Msa0779690:CDS
TACGGATGAAGATGATGATC+AGG 0.452690 5_2:+61045234 None:intergenic
CCTGAAATTGTATATGGAAA+AGG 0.453697 5_2:+61046836 None:intergenic
TGCTAACTGTAGTTTGAGAT+TGG 0.455284 5_2:+61043289 None:intergenic
CGAGGTTGGGCGGGCTAGCA+GGG 0.456916 5_2:-61042017 Msa0779690:CDS
CCAAACTGAACCCAAAGAAT+AGG 0.459840 5_2:+61046438 None:intergenic
GAAATCTTGCTGGTAAAGAA+AGG 0.460928 5_2:-61042822 Msa0779690:CDS
GATTGGCTGTCTTTGGAAGT+TGG 0.461684 5_2:+61043306 None:intergenic
GAGAAATTCAAGATGACTAC+TGG 0.462625 5_2:-61043354 Msa0779690:CDS
ACATTAAAATGCAAGCTTCA+GGG 0.462868 5_2:-61046899 Msa0779690:five_prime_UTR
AGTAAGGCGTCAAGTGGTAA+TGG 0.467860 5_2:-61043192 Msa0779690:CDS
GAGAGGCAGAGTTGGAGGAG+GGG 0.468764 5_2:-61042072 Msa0779690:CDS
TGATGTAGCTTCTCGTTTGG+AGG 0.470498 5_2:+61045360 None:intergenic
TCAGATGGAGGTTCAACAAC+AGG 0.471995 5_2:+61044748 None:intergenic
TAGCTTGTCCACTGAGACAA+AGG 0.472838 5_2:-61045940 Msa0779690:CDS
ATAATGAAAGGCGATCAAAA+AGG 0.473517 5_2:-61042678 Msa0779690:CDS
TATTCTTCAGGCAGCTACTA+GGG 0.474651 5_2:-61043244 Msa0779690:CDS
CTATCCTACAATTGAAACTC+AGG 0.475218 5_2:+61046739 None:intergenic
CTCGGATTTGAACCGCAACT+TGG 0.475411 5_2:+61046777 None:intergenic
CTGATGTGTTGAAGATGGTT+TGG 0.477379 5_2:-61046985 Msa0779690:five_prime_UTR
GAAGATGATGATCAGGCATC+AGG 0.477942 5_2:+61045241 None:intergenic
GCTGAGATTAGAAATCTTGC+TGG 0.478163 5_2:-61042832 Msa0779690:CDS
CTTGAAACAAACACACCCTT+AGG 0.480844 5_2:-61047407 Msa0779690:five_prime_UTR
TATGCTTTGTCTTTCTGCTC+CGG 0.487165 5_2:+61042116 None:intergenic
AGTCAGGAGCTGGATCAAAC+AGG 0.488581 5_2:-61045132 Msa0779690:CDS
CTCCACACAGAAGTCGGGAC+AGG 0.490331 5_2:-61042528 Msa0779690:CDS
CCACATGTGCGTTTCTCTCA+AGG 0.490342 5_2:+61045034 None:intergenic
TTTGCCGTCATCTCAACTGC+AGG 0.490397 5_2:-61043124 Msa0779690:CDS
ATAACTATCTTTAAGTCAGA+TGG 0.491088 5_2:+61044733 None:intergenic
CGCTCTTCTCGACGTCATCA+TGG 0.491371 5_2:-61042340 Msa0779690:CDS
GATTAGAAGGCAGAAGAAAT+GGG 0.493049 5_2:+61044626 None:intergenic
CATGTTTACTGGATCTTGAA+CGG 0.493859 5_2:+61042650 None:intergenic
CAGGAGTTGCCTCAGATTCA+GGG 0.496890 5_2:-61044828 Msa0779690:CDS
AGGTTTATAATGTTATTCTC+GGG 0.499561 5_2:+61047428 None:intergenic
TGCTTCTGTTCCAGTTGCCA+AGG 0.499747 5_2:-61043064 Msa0779690:CDS
TGAAAGAGAGGCAGAGTTGG+AGG 0.499968 5_2:-61042077 Msa0779690:CDS
AGTCACAAGTAAGCGAGGTT+GGG 0.499970 5_2:-61042030 Msa0779690:CDS
ACCTACCAAATGACATGGAC+CGG 0.500293 5_2:-61043380 Msa0779690:CDS
CCTTCTAAAAGTGTTTCCTA+AGG 0.500828 5_2:+61047391 None:intergenic
GGCTCAACAGATAAAGCTCT+TGG 0.504528 5_2:+61042883 None:intergenic
CATTAAAATGCAAGCTTCAG+GGG 0.505539 5_2:-61046898 Msa0779690:five_prime_UTR
GCAATGTTTGTCAGCAAACA+TGG 0.506547 5_2:-61045321 Msa0779690:CDS
AAGAGAGGCAGAGTTGGAGG+AGG 0.507274 5_2:-61042074 Msa0779690:CDS
TGACGGCAAACTCCGAGAGC+TGG 0.507276 5_2:+61043137 None:intergenic
AAGAAAATGAAGAAGATACA+AGG 0.507909 5_2:-61042591 Msa0779690:CDS
ACAAGTAAGCGAGGTTGGGC+GGG 0.509025 5_2:-61042026 Msa0779690:CDS
CTCGTTTGTAGGCCTCGTCA+TGG 0.513742 5_2:+61046397 None:intergenic
AGAATACTTGTCGTTGGAGG+AGG 0.513912 5_2:+61042459 None:intergenic
CCATCAGTATAATGATAAAG+AGG 0.518423 5_2:+61047189 None:intergenic
AGTTCTTCAAACTGCTGAAG+AGG 0.519694 5_2:-61044581 Msa0779690:intron
TCGATCTCCACACAGAAGTC+GGG 0.520051 5_2:-61042533 Msa0779690:CDS
ACAGTCTAAGTTACAAGGCA+AGG 0.520076 5_2:-61043445 Msa0779690:intron
GGCTATTGCAGCAGCAGGTG+AGG 0.520962 5_2:-61043025 Msa0779690:CDS
CATGTGTGGTTAAAATTCCT+GGG 0.521679 5_2:-61047533 Msa0779690:five_prime_UTR
AAATCTTGCTGGTAAAGAAA+GGG 0.523325 5_2:-61042821 Msa0779690:CDS
ATCTTCAGATGCAGCCAAGA+AGG 0.525024 5_2:-61044959 Msa0779690:CDS
AGAGGAGGAAGAAGAGGACG+AGG 0.526595 5_2:-61042626 Msa0779690:CDS
TTTGGACAAGAATAGAAGTC+AGG 0.527933 5_2:-61045148 Msa0779690:CDS
ATCATTGTCCTTTGTCTCAG+TGG 0.530661 5_2:+61045932 None:intergenic
GCTGAACAGGATCGTGCTCA+TGG 0.531525 5_2:-61044655 Msa0779690:CDS
GTGGGAATTTGTCCAGCTCT+CGG 0.534175 5_2:-61043149 Msa0779690:CDS
TGTTTACAGTCTAAGTTACA+AGG 0.534524 5_2:-61043450 Msa0779690:intron
AAGTCACAAGTAAGCGAGGT+TGG 0.536520 5_2:-61042031 Msa0779690:CDS
CAAGAATAGAAGTCAGGAGC+TGG 0.537742 5_2:-61045142 Msa0779690:CDS
GGCATCAGGAACCCAAATGT+TGG 0.539081 5_2:+61045255 None:intergenic
TTCAAAACTTGAAACAAACA+TGG 0.539886 5_2:-61047477 Msa0779690:five_prime_UTR
TCCGGTCCATGTCATTTGGT+AGG 0.541588 5_2:+61043379 None:intergenic
ATGAGAATACTTGTCGTTGG+AGG 0.542787 5_2:+61042456 None:intergenic
GACTCGTTAGAGATCTGAAT+CGG 0.542939 5_2:+61046681 None:intergenic
CAAGGCCTTGGAAGTGATGG+TGG 0.543308 5_2:-61043168 Msa0779690:CDS
ATGTTCTGTTATTCGATGAA+AGG 0.543832 5_2:-61047263 Msa0779690:five_prime_UTR
AACAGGATCGTGCTCATGGA+AGG 0.546005 5_2:-61044651 Msa0779690:CDS
GATTCCACCTTGCCAAGTTG+CGG 0.546018 5_2:-61046789 Msa0779690:five_prime_UTR
TACGTGAATGTCTATGCTCA+TGG 0.546992 5_2:+61042299 None:intergenic
TATTCCTACGCTAATAGGGT+GGG 0.547937 5_2:+61047570 None:intergenic
TGGAACTGATGTGTTGAAGA+TGG 0.548093 5_2:-61046990 Msa0779690:five_prime_UTR
TCAAAACTTGAAACAAACAT+GGG 0.548602 5_2:-61047476 Msa0779690:five_prime_UTR
TTAGAGATCTGAATCGGCGA+TGG 0.549486 5_2:+61046687 None:intergenic
CACAAGTAAGCGAGGTTGGG+CGG 0.550850 5_2:-61042027 Msa0779690:CDS
AAAGTGGCTATTGCAGCAGC+AGG 0.551862 5_2:-61043030 Msa0779690:CDS
GAACTCATAGACGGATCCGC+TGG 0.552448 5_2:+61043405 None:intergenic
CTTCTAAAAGTGTTTCCTAA+GGG 0.553204 5_2:+61047392 None:intergenic
ATTTGAACCGCAACTTGGCA+AGG 0.557214 5_2:+61046782 None:intergenic
GAAAGACAAAGCATAAGAGC+AGG 0.559960 5_2:-61042108 Msa0779690:CDS
ATCCAGTAAACATGAAGAGG+AGG 0.560824 5_2:-61042641 Msa0779690:CDS
TCAGATGCAGCCAAGAAGGA+TGG 0.564145 5_2:-61044955 Msa0779690:CDS
CAACGACAAGTATTCTCATA+GGG 0.564384 5_2:-61042452 Msa0779690:CDS
TTATTCCTACGCTAATAGGG+TGG 0.566181 5_2:+61047569 None:intergenic
AATTCCCACCATCACTTCCA+AGG 0.566204 5_2:+61043163 None:intergenic
ACAGAACTGTTATAAGGGTG+TGG 0.569026 5_2:+61046959 None:intergenic
AGTATTCTCATAGGGAGAGT+AGG 0.570248 5_2:-61042444 Msa0779690:CDS
ACATGAAGAGGAGGAAGAAG+AGG 0.571410 5_2:-61042632 Msa0779690:CDS
CCTATGAGAATACTTGTCGT+TGG 0.572072 5_2:+61042453 None:intergenic
CAGTCTAAGTTACAAGGCAA+GGG 0.572361 5_2:-61043444 Msa0779690:CDS
CAGGTCTCATGCTGAAAGAG+AGG 0.572770 5_2:-61042089 Msa0779690:CDS
CTGCTACTTCTGCATCATCA+GGG 0.573669 5_2:-61044999 Msa0779690:CDS
CTGAATTATTTAAGTCGACA+AGG 0.575592 5_2:-61041985 Msa0779690:CDS
CTATGGAAATGAAGAGGATG+AGG 0.578886 5_2:-61045082 Msa0779690:CDS
TATCCTACAATTGAAACTCA+GGG 0.582753 5_2:+61046740 None:intergenic
CCTTGAGAGAAACGCACATG+TGG 0.582859 5_2:-61045034 Msa0779690:CDS
AAGATCCAGTAAACATGAAG+AGG 0.583036 5_2:-61042644 Msa0779690:CDS
GTCGATCTCCACACAGAAGT+CGG 0.583179 5_2:-61042534 Msa0779690:CDS
GCATGACAGCTCCTCTGAGG+AGG 0.584258 5_2:-61042422 Msa0779690:CDS
TTAAGACAGCCATTTCAGCT+AGG 0.584377 5_2:-61044858 Msa0779690:CDS
ACCATTAGACCCTGAATCTG+AGG 0.584397 5_2:+61044819 None:intergenic
CATGACAGCTCCTCTGAGGA+GGG 0.585607 5_2:-61042421 Msa0779690:CDS
CTAAATTATTCAACACACAC+AGG 0.586087 5_2:+61046872 None:intergenic
AATTCCCACCCTATTAGCGT+AGG 0.586259 5_2:-61047574 Msa0779690:five_prime_UTR
CAAAACTTGAAACAAACATG+GGG 0.588794 5_2:-61047475 Msa0779690:five_prime_UTR
CTTCTCGACGTCATCATGGA+GGG 0.590491 5_2:-61042336 Msa0779690:CDS
TTTAGTCATATGTGCTTCAG+AGG 0.590900 5_2:+61042996 None:intergenic
ATTCTCGGGAATATGAGATA+AGG 0.591123 5_2:+61047442 None:intergenic
AAGGACAATGATACTGACTC+TGG 0.600997 5_2:-61045921 Msa0779690:CDS
ACTGGCAATTTAAGGAAGGA+TGG 0.601969 5_2:-61043336 Msa0779690:CDS
GCGTCAAGTGGTAATGGTCA+AGG 0.602597 5_2:-61043186 Msa0779690:CDS
AGAAAATGAAGAAGATACAA+GGG 0.603122 5_2:-61042590 Msa0779690:CDS
TATTGCAGCAGCAGGTGAGG+CGG 0.603948 5_2:-61043022 Msa0779690:CDS
AGACCCTGCAGTTGAGATGA+CGG 0.604995 5_2:+61043120 None:intergenic
GACTACTGGCAATTTAAGGA+AGG 0.605578 5_2:-61043340 Msa0779690:CDS
GGAAATGAAGAGGATGAGGA+TGG 0.606153 5_2:-61045078 Msa0779690:CDS
GGTTGGGCGGGCTAGCAGGG+AGG 0.607980 5_2:-61042014 Msa0779690:CDS
CTGCCAGAAGCACACTCCAG+CGG 0.608202 5_2:-61043421 Msa0779690:CDS
GGATGCAATCTAATATGCTA+CGG 0.609247 5_2:-61046186 Msa0779690:CDS
TTCTGACCTACCAAATGACA+TGG 0.612916 5_2:-61043385 Msa0779690:CDS
TTACTGTTGATAATAATGAA+AGG 0.613626 5_2:-61042690 Msa0779690:CDS
AGTTCAATCTTAGATGTACT+GGG 0.616112 5_2:+61044772 None:intergenic
GAACCTGAAAGTCCAGAGCT+CGG 0.616412 5_2:+61042859 None:intergenic
AGGGGTCTCGCTGTACGACT+CGG 0.616421 5_2:+61046759 None:intergenic
TCCACACAGAAGTCGGGACA+GGG 0.618957 5_2:-61042527 Msa0779690:CDS
AGATAAAAGTCACAAGTCTG+AGG 0.619109 5_2:-61042764 Msa0779690:CDS
GGTCAAGGCCTTGGAAGTGA+TGG 0.619624 5_2:-61043171 Msa0779690:CDS
GTTACTTCAGGTGACTGAGA+GGG 0.621004 5_2:+61041959 None:intergenic
ACTATCTTTAAGTCAGATGG+AGG 0.622930 5_2:+61044736 None:intergenic
TACAGTTAGCATTCATGCGG+CGG 0.624655 5_2:-61043277 Msa0779690:CDS
TTGCCGTCATCTCAACTGCA+GGG 0.630505 5_2:-61043123 Msa0779690:CDS
AAATAAATATGAGTGGTAGT+GGG 0.633105 5_2:-61047637 Msa0779690:five_prime_UTR
TCTTCTCGACGTCATCATGG+AGG 0.634212 5_2:-61042337 Msa0779690:CDS
ATTCTTCAGGCAGCTACTAG+GGG 0.639195 5_2:-61043243 Msa0779690:CDS
CATGATGACGTCGAGAAGAG+CGG 0.640967 5_2:+61042341 None:intergenic
AAAATGCAAATAAATATGAG+TGG 0.641287 5_2:-61047644 Msa0779690:five_prime_UTR
AAACTAAACACTGTCTTAGG+CGG 0.642274 5_2:+61046247 None:intergenic
CTGATGATGAGCATAGTCAC+CGG 0.643482 5_2:-61042135 Msa0779690:CDS
TGCTACTTCTGCATCATCAG+GGG 0.643605 5_2:-61044998 Msa0779690:CDS
CTTGCTGGTAAAGAAAGGGA+AGG 0.647067 5_2:-61042817 Msa0779690:CDS
AACTACAGTTAGCATTCATG+CGG 0.648226 5_2:-61043280 Msa0779690:CDS
ACCTTAATGCCTTATTCACG+AGG 0.652145 5_2:+61047335 None:intergenic
TAGGCATGACAGCTCCTCTG+AGG 0.652290 5_2:-61042425 Msa0779690:CDS
ACATCGCAATCTGAATGCAG+AGG 0.653626 5_2:-61043091 Msa0779690:CDS
AAGGCCTTGGAAGTGATGGT+GGG 0.655180 5_2:-61043167 Msa0779690:CDS
GGTAGGTCAGAACTCATAGA+CGG 0.655742 5_2:+61043396 None:intergenic
TCCCTGTCCCGACTTCTGTG+TGG 0.656017 5_2:+61042526 None:intergenic
CAGTTAAACAGAAGAGTGTG+TGG 0.656539 5_2:+61046811 None:intergenic
AGCTGCCTGAAGAATAGCTG+CGG 0.660615 5_2:+61043251 None:intergenic
TGAACCGCAACTTGGCAAGG+TGG 0.661254 5_2:+61046785 None:intergenic
AGTTACTTCAGGTGACTGAG+AGG 0.662084 5_2:+61041958 None:intergenic
ATCTGTCTATGGAAATGAAG+AGG 0.664551 5_2:-61045088 Msa0779690:CDS
ATTATTCTGAGAGTGAAACA+AGG 0.668831 5_2:-61045285 Msa0779690:CDS
TCGATGCTCACCCTCCTCAG+AGG 0.670941 5_2:+61042411 None:intergenic
TGAATTATTTAAGTCGACAA+GGG 0.671251 5_2:-61041984 Msa0779690:CDS
CTTGAGAGAAACGCACATGT+GGG 0.674979 5_2:-61045033 Msa0779690:CDS
TAAATTATTCAACACACACA+GGG 0.677951 5_2:+61046873 None:intergenic
CAGGAGCTGGATCAAACAGG+AGG 0.687441 5_2:-61045129 Msa0779690:CDS
AGACAAGTCACAAGTAAGCG+AGG 0.688184 5_2:-61042035 Msa0779690:CDS
ATCCTACAATTGAAACTCAG+GGG 0.694216 5_2:+61046741 None:intergenic
CCAACTAAAGCACATAACGC+AGG 0.707282 5_2:+61047295 None:intergenic
TCTGCATTCAGATTGCGATG+TGG 0.712740 5_2:+61043093 None:intergenic
CCTGAAAGTCCAGAGCTCGG+TGG 0.714414 5_2:+61042862 None:intergenic
AGGGTGAGCATCGACACTTG+AGG 0.725403 5_2:-61042402 Msa0779690:CDS
ATACAAACTGAACCATGACG+AGG 0.733169 5_2:-61046409 Msa0779690:five_prime_UTR
CAGACAGTGACAGAAACAGG+CGG 0.744142 5_2:-61042501 Msa0779690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAATTAAAAATTTC+TGG - chr5_2:61042145-61042164 Msa0779690:CDS 10.0%
!! TAAATTTAATTGACATATAT+GGG + chr5_2:61042424-61042443 None:intergenic 10.0%
!!! AATATACTTTATCAAAATTT+TGG + chr5_2:61042641-61042660 None:intergenic 10.0%
!! TTACTAAAAATTTCTAAATT+AGG + chr5_2:61046447-61046466 None:intergenic 10.0%
!!! TAATTTAGAAATTTTTAGTA+AGG - chr5_2:61046446-61046465 Msa0779690:five_prime_UTR 10.0%
!! CTAAATTTAATTGACATATA+TGG + chr5_2:61042425-61042444 None:intergenic 15.0%
!!! TGTCAATTAAATTTAGATTT+TGG - chr5_2:61042429-61042448 Msa0779690:CDS 15.0%
!!! TTTTGATAAAGTATATTGAA+TGG - chr5_2:61042644-61042663 Msa0779690:CDS 15.0%
!! TTGTTAAACAAAAAAATAAC+AGG + chr5_2:61045676-61045695 None:intergenic 15.0%
!! AAACAAAAACAACAAAAATA+AGG + chr5_2:61045853-61045872 None:intergenic 15.0%
!!! TTTTTGTTTTTATGAAATAG+CGG - chr5_2:61045864-61045883 Msa0779690:intron 15.0%
!!! GGTTAAATTTTAGATTTCAT+TGG - chr5_2:61041943-61041962 Msa0779690:CDS 20.0%
!! AAAATGCAAATAAATATGAG+TGG - chr5_2:61042010-61042029 Msa0779690:CDS 20.0%
!!! AAAAGTATAAAAATCATGTG+TGG - chr5_2:61042107-61042126 Msa0779690:CDS 20.0%
!!! TTTTTAATTTTTTTGTTCCC+AGG + chr5_2:61042141-61042160 None:intergenic 20.0%
!! AAGGTTTATAATGTTATTCT+CGG + chr5_2:61042230-61042249 None:intergenic 20.0%
!!! AATTTTGGTTATTTTCAGTT+TGG + chr5_2:61042626-61042645 None:intergenic 20.0%
!! CCAAATAAACTAAAACAAAA+TGG + chr5_2:61043536-61043555 None:intergenic 20.0%
!!! CCATTTTGTTTTAGTTTATT+TGG - chr5_2:61043533-61043552 Msa0779690:intron 20.0%
!! AATCATTATCTAAACAAACA+CGG + chr5_2:61043639-61043658 None:intergenic 20.0%
!! TGATTATTCAAGTATATATG+AGG - chr5_2:61044131-61044150 Msa0779690:intron 20.0%
!!! CATAACACTAATTTTAAAGA+GGG + chr5_2:61044214-61044233 None:intergenic 20.0%
!! TCAACAAAAAACCTAAAATA+CGG + chr5_2:61044441-61044460 None:intergenic 20.0%
!! GAATAACCAACATAATAAAA+GGG + chr5_2:61045248-61045267 None:intergenic 20.0%
!! AGAATAACCAACATAATAAA+AGG + chr5_2:61045249-61045268 None:intergenic 20.0%
!! ATATTGTGTTAATTAATCTG+TGG - chr5_2:61045285-61045304 Msa0779690:CDS 20.0%
!! ACAGTAAATAAAATATTGTC+TGG - chr5_2:61045353-61045372 Msa0779690:CDS 20.0%
!! TTTCTCTTAAAATGAAATAG+CGG + chr5_2:61045523-61045542 None:intergenic 20.0%
!! ATGAATATTCAAAGCAATAT+TGG - chr5_2:61046005-61046024 Msa0779690:CDS 20.0%
!! GTGTAATTTGATTAATTTCA+AGG - chr5_2:61046143-61046162 Msa0779690:intron 20.0%
!!! TTACTGTTGATAATAATGAA+AGG - chr5_2:61046964-61046983 Msa0779690:five_prime_UTR 20.0%
! AAATAAATATGAGTGGTAGT+GGG - chr5_2:61042017-61042036 Msa0779690:CDS 25.0%
!!! TAAGTTGAGTTTTATTCTCA+TGG - chr5_2:61042049-61042068 Msa0779690:CDS 25.0%
!! TTTTTATTCCTACGCTAATA+GGG + chr5_2:61042091-61042110 None:intergenic 25.0%
! TTCAAAACTTGAAACAAACA+TGG - chr5_2:61042177-61042196 Msa0779690:CDS 25.0%
! TCAAAACTTGAAACAAACAT+GGG - chr5_2:61042178-61042197 Msa0779690:CDS 25.0%
! AGGTTTATAATGTTATTCTC+GGG + chr5_2:61042229-61042248 None:intergenic 25.0%
!! TGTTTTCAAAACAAACAAGT+AGG - chr5_2:61042547-61042566 Msa0779690:CDS 25.0%
! TAAATTATTCAACACACACA+GGG + chr5_2:61042784-61042803 None:intergenic 25.0%
! TGTGTGTTGAATAATTTAGT+TGG - chr5_2:61042786-61042805 Msa0779690:CDS 25.0%
! GTGTGTTGAATAATTTAGTT+GGG - chr5_2:61042787-61042806 Msa0779690:CDS 25.0%
!! TGAATAATTTAGTTGGGTTT+TGG - chr5_2:61042793-61042812 Msa0779690:CDS 25.0%
!! TTATTTAAGAGTACAGATTC+TGG - chr5_2:61043087-61043106 Msa0779690:CDS 25.0%
! GGACTAATTGATATATCTTT+CGG - chr5_2:61043315-61043334 Msa0779690:CDS 25.0%
!!! GGATTTTTTTTCTCTTTTCA+CGG - chr5_2:61043366-61043385 Msa0779690:CDS 25.0%
! AAAAAACTAAACACTGTCTT+AGG + chr5_2:61043413-61043432 None:intergenic 25.0%
! GTTTGTTTAGATAATGATTC+AGG - chr5_2:61043640-61043659 Msa0779690:intron 25.0%
! CATGATATCAAAAGGAAAAA+AGG + chr5_2:61044001-61044020 None:intergenic 25.0%
!! TTCCTTTTGATATCATGAAA+AGG - chr5_2:61044004-61044023 Msa0779690:intron 25.0%
!! TCCTTTTGATATCATGAAAA+GGG - chr5_2:61044005-61044024 Msa0779690:intron 25.0%
!!! GCATAACACTAATTTTAAAG+AGG + chr5_2:61044215-61044234 None:intergenic 25.0%
!!! CTTTTTCTTTCAAAGGTATT+TGG + chr5_2:61044740-61044759 None:intergenic 25.0%
! AAAAAGTTCCTGTTATAAAG+CGG - chr5_2:61044754-61044773 Msa0779690:CDS 25.0%
! ATAACTATCTTTAAGTCAGA+TGG + chr5_2:61044924-61044943 None:intergenic 25.0%
! GTTGAGTTCATCTTAAAAAA+TGG - chr5_2:61044954-61044973 Msa0779690:CDS 25.0%
! AGTTCATCTTAAAAAATGGA+AGG - chr5_2:61044958-61044977 Msa0779690:CDS 25.0%
!! TAAGTATGATATCGATTAGA+AGG + chr5_2:61045044-61045063 None:intergenic 25.0%
! AGAAAATACAAAATTGTCCT+TGG - chr5_2:61045538-61045557 Msa0779690:intron 25.0%
! TGTCCTTGGTTTAAAAAAAA+AGG - chr5_2:61045552-61045571 Msa0779690:intron 25.0%
! GTCCTTGGTTTAAAAAAAAA+GGG - chr5_2:61045553-61045572 Msa0779690:intron 25.0%
!!! TACCCTTTTTTTTTAAACCA+AGG + chr5_2:61045558-61045577 None:intergenic 25.0%
!! GTTTTATATGAACAAAACAG+AGG + chr5_2:61045809-61045828 None:intergenic 25.0%
! AAGAAAATGAAGAAGATACA+AGG - chr5_2:61047063-61047082 Msa0779690:five_prime_UTR 25.0%
! AGAAAATGAAGAAGATACAA+GGG - chr5_2:61047064-61047083 Msa0779690:five_prime_UTR 25.0%
! TGAATTATTTAAGTCGACAA+GGG - chr5_2:61047670-61047689 Msa0779690:five_prime_UTR 25.0%
AAGAAAATGAAAGTCATTCC+TGG + chr5_2:61041911-61041930 None:intergenic 30.0%
! CATTTTCTTGATCATGTGTT+TGG - chr5_2:61041922-61041941 Msa0779690:CDS 30.0%
CAAATAAATATGAGTGGTAG+TGG - chr5_2:61042016-61042035 Msa0779690:CDS 30.0%
! CTTTTTATTCCTACGCTAAT+AGG + chr5_2:61042092-61042111 None:intergenic 30.0%
CAAAACTTGAAACAAACATG+GGG - chr5_2:61042179-61042198 Msa0779690:CDS 30.0%
!! CTTCTAAAAGTGTTTCCTAA+GGG + chr5_2:61042265-61042284 None:intergenic 30.0%
! AGAAGGTTTTGCTGAAATTT+TGG - chr5_2:61042280-61042299 Msa0779690:CDS 30.0%
ATGTTCTGTTATTCGATGAA+AGG - chr5_2:61042391-61042410 Msa0779690:CDS 30.0%
CCATCAGTATAATGATAAAG+AGG + chr5_2:61042468-61042487 None:intergenic 30.0%
CCTCTTTATCATTATACTGA+TGG - chr5_2:61042465-61042484 Msa0779690:CDS 30.0%
! ACTGATGGCTTTTATATGTT+TGG - chr5_2:61042480-61042499 Msa0779690:CDS 30.0%
ACCAAACAGAACTGTTATAA+GGG + chr5_2:61042703-61042722 None:intergenic 30.0%
AACCAAACAGAACTGTTATA+AGG + chr5_2:61042704-61042723 None:intergenic 30.0%
ACATTAAAATGCAAGCTTCA+GGG - chr5_2:61042755-61042774 Msa0779690:CDS 30.0%
CTAAATTATTCAACACACAC+AGG + chr5_2:61042785-61042804 None:intergenic 30.0%
CCTGAAATTGTATATGGAAA+AGG + chr5_2:61042821-61042840 None:intergenic 30.0%
! CCTTTTCCATATACAATTTC+AGG - chr5_2:61042818-61042837 Msa0779690:CDS 30.0%
TATCCTACAATTGAAACTCA+GGG + chr5_2:61042917-61042936 None:intergenic 30.0%
! TTTCGTAGAGAGATTTTAGA+AGG - chr5_2:61043020-61043039 Msa0779690:CDS 30.0%
!! ATTTTAGAAGGAAGTAAAGC+TGG - chr5_2:61043032-61043051 Msa0779690:CDS 30.0%
ACCTCAAAATCAGTTTAGTT+TGG - chr5_2:61043154-61043173 Msa0779690:CDS 30.0%
! CATGAACAAGTCTTTTCAAA+TGG - chr5_2:61043280-61043299 Msa0779690:CDS 30.0%
TTCAAATGGTTCTCATCATT+TGG - chr5_2:61043294-61043313 Msa0779690:CDS 30.0%
!! TATATCTTTCGGTGCAATTT+TGG - chr5_2:61043326-61043345 Msa0779690:CDS 30.0%
!!! TTTTTTTTCTCTTTTCACGG+TGG - chr5_2:61043369-61043388 Msa0779690:CDS 30.0%
ACAACAATCTTTACATTTGC+AGG - chr5_2:61043447-61043466 Msa0779690:intron 30.0%
TTATCTAAACAAACACGGAA+AGG + chr5_2:61043634-61043653 None:intergenic 30.0%
AGATTATGAAGTAAGCTTTC+TGG + chr5_2:61043781-61043800 None:intergenic 30.0%
AGAAAGCTTACTTCATAATC+TGG - chr5_2:61043780-61043799 Msa0779690:intron 30.0%
AAGCATGAAAATCACATGAT+CGG + chr5_2:61043833-61043852 None:intergenic 30.0%
! ACATTGGTTAAACAATGAGA+GGG + chr5_2:61043863-61043882 None:intergenic 30.0%
ATTGTTTAACCAATGTGACT+AGG - chr5_2:61043867-61043886 Msa0779690:intron 30.0%
AGGGTACATATGTTATTCTA+AGG - chr5_2:61043902-61043921 Msa0779690:intron 30.0%
! CCTTTTGATATCATGAAAAG+GGG - chr5_2:61044006-61044025 Msa0779690:intron 30.0%
TATACCTCTTGTGAGAAAAT+GGG - chr5_2:61044068-61044087 Msa0779690:intron 30.0%
GCTGGAAAAGAAAAACAAAA+AGG + chr5_2:61044275-61044294 None:intergenic 30.0%
CTCTCAGAATAATTTCTGAT+TGG + chr5_2:61044362-61044381 None:intergenic 30.0%
! ATTATTCTGAGAGTGAAACA+AGG - chr5_2:61044369-61044388 Msa0779690:intron 30.0%
AAGGAGATAATCCAACATTT+GGG - chr5_2:61044388-61044407 Msa0779690:intron 30.0%
! ATCATCTTCATCCGTATTTT+AGG - chr5_2:61044427-61044446 Msa0779690:intron 30.0%
!! ACAGGAACTTTTTCTTTCAA+AGG + chr5_2:61044747-61044766 None:intergenic 30.0%
AGTTCAATCTTAGATGTACT+GGG + chr5_2:61044885-61044904 None:intergenic 30.0%
TAGTTCAATCTTAGATGTAC+TGG + chr5_2:61044886-61044905 None:intergenic 30.0%
CCAACATAATAAAAGGGAAT+GGG + chr5_2:61045242-61045261 None:intergenic 30.0%
ACCAACATAATAAAAGGGAA+TGG + chr5_2:61045243-61045262 None:intergenic 30.0%
! TATCCTGCTATAGCATTTTT+GGG - chr5_2:61045903-61045922 Msa0779690:CDS 30.0%
GCTTTATAAAATGTTCCTTC+TGG - chr5_2:61046046-61046065 Msa0779690:intron 30.0%
TGTTTACAGTCTAAGTTACA+AGG - chr5_2:61046204-61046223 Msa0779690:exon 30.0%
TCATCTTGAATTTCTCTTTC+CGG + chr5_2:61046296-61046315 None:intergenic 30.0%
AAATCTTGCTGGTAAAGAAA+GGG - chr5_2:61046833-61046852 Msa0779690:five_prime_UTR 30.0%
! TCTGAGTTATCAGTATTGAA+TGG + chr5_2:61046873-61046892 None:intergenic 30.0%
ATAATGAAAGGCGATCAAAA+AGG - chr5_2:61046976-61046995 Msa0779690:five_prime_UTR 30.0%
CTGAATTATTTAAGTCGACA+AGG - chr5_2:61047669-61047688 Msa0779690:five_prime_UTR 30.0%
TCAGAAACATTAGTTACTTC+AGG + chr5_2:61047710-61047729 None:intergenic 30.0%
TCATGTGTGGTTAAAATTCC+TGG - chr5_2:61042120-61042139 Msa0779690:CDS 35.0%
CATGTGTGGTTAAAATTCCT+GGG - chr5_2:61042121-61042140 Msa0779690:CDS 35.0%
ATTCTCGGGAATATGAGATA+AGG + chr5_2:61042215-61042234 None:intergenic 35.0%
!! CCTTCTAAAAGTGTTTCCTA+AGG + chr5_2:61042266-61042285 None:intergenic 35.0%
! CCTTAGGAAACACTTTTAGA+AGG - chr5_2:61042263-61042282 Msa0779690:CDS 35.0%
TAGCATTTACCTCGTGAATA+AGG - chr5_2:61042310-61042329 Msa0779690:CDS 35.0%
! GTGAATAAGGCATTAAGGTT+TGG - chr5_2:61042323-61042342 Msa0779690:CDS 35.0%
TCTTGTGAACCATGAACAAT+AGG + chr5_2:61042573-61042592 None:intergenic 35.0%
TTCAAGTGCAGTTCATAGTT+TGG + chr5_2:61042603-61042622 None:intergenic 35.0%
ACCCTTATAACAGTTCTGTT+TGG - chr5_2:61042699-61042718 Msa0779690:CDS 35.0%
CACATTAAAATGCAAGCTTC+AGG - chr5_2:61042754-61042773 Msa0779690:CDS 35.0%
CATTAAAATGCAAGCTTCAG+GGG - chr5_2:61042756-61042775 Msa0779690:CDS 35.0%
ATCCTACAATTGAAACTCAG+GGG + chr5_2:61042916-61042935 None:intergenic 35.0%
CTATCCTACAATTGAAACTC+AGG + chr5_2:61042918-61042937 None:intergenic 35.0%
AGTCATGACTCAGTGATTTA+AGG - chr5_2:61042992-61043011 Msa0779690:CDS 35.0%
!!! CTAAACTGATTTTGAGGTTC+AGG + chr5_2:61043152-61043171 None:intergenic 35.0%
!! GCCAAACTAAACTGATTTTG+AGG + chr5_2:61043158-61043177 None:intergenic 35.0%
AGTTCATCGAACCTATTCTT+TGG - chr5_2:61043205-61043224 Msa0779690:CDS 35.0%
GTTCATCGAACCTATTCTTT+GGG - chr5_2:61043206-61043225 Msa0779690:CDS 35.0%
AAACTAAACACTGTCTTAGG+CGG + chr5_2:61043410-61043429 None:intergenic 35.0%
GGATGCAATCTAATATGCTA+CGG - chr5_2:61043468-61043487 Msa0779690:intron 35.0%
! CAAGTAAGGATGTTTTCAAC+TGG - chr5_2:61043507-61043526 Msa0779690:intron 35.0%
! GTTAGTGCTATTACTGTTGT+AGG - chr5_2:61043557-61043576 Msa0779690:intron 35.0%
GTAGGTGTATGATATTGTTG+CGG - chr5_2:61043575-61043594 Msa0779690:intron 35.0%
! CACATTGGTTAAACAATGAG+AGG + chr5_2:61043864-61043883 None:intergenic 35.0%
CAATTATCACCTAGTCACAT+TGG + chr5_2:61043879-61043898 None:intergenic 35.0%
TGACTAGGTGATAATTGTCT+AGG - chr5_2:61043882-61043901 Msa0779690:intron 35.0%
GACTAGGTGATAATTGTCTA+GGG - chr5_2:61043883-61043902 Msa0779690:intron 35.0%
ATGTCTAAGTTTCAGATGCT+TGG - chr5_2:61043931-61043950 Msa0779690:intron 35.0%
AAAGAAGTTCTTGTGACTCA+AGG - chr5_2:61043959-61043978 Msa0779690:intron 35.0%
! CCCCTTTTCATGATATCAAA+AGG + chr5_2:61044009-61044028 None:intergenic 35.0%
CTATACCTCTTGTGAGAAAA+TGG - chr5_2:61044067-61044086 Msa0779690:intron 35.0%
ATGTATTCATATATACCGCC+TGG - chr5_2:61044183-61044202 Msa0779690:intron 35.0%
CAAGGAGATAATCCAACATT+TGG - chr5_2:61044387-61044406 Msa0779690:intron 35.0%
AAAGATGACAAAAACGATGC+AGG - chr5_2:61044477-61044496 Msa0779690:intron 35.0%
TTTGGACAAGAATAGAAGTC+AGG - chr5_2:61044506-61044525 Msa0779690:intron 35.0%
ATCTGTCTATGGAAATGAAG+AGG - chr5_2:61044566-61044585 Msa0779690:intron 35.0%
! AGGTCACTAGTATTTTCAGT+TGG + chr5_2:61044603-61044622 None:intergenic 35.0%
!! TGTTTTTGTCCTAGCTGAAA+TGG + chr5_2:61044808-61044827 None:intergenic 35.0%
ATTTCAGCTAGGACAAAAAC+AGG - chr5_2:61044807-61044826 Msa0779690:CDS 35.0%
ACTATCTTTAAGTCAGATGG+AGG + chr5_2:61044921-61044940 None:intergenic 35.0%
GATTAGAAGGCAGAAGAAAT+GGG + chr5_2:61045031-61045050 None:intergenic 35.0%
CACAAACAGATGAATTGCAA+GGG + chr5_2:61045126-61045145 None:intergenic 35.0%
ACACAAACAGATGAATTGCA+AGG + chr5_2:61045127-61045146 None:intergenic 35.0%
TTGCAATTCATCTGTTTGTG+TGG - chr5_2:61045126-61045145 Msa0779690:CDS 35.0%
TGGTTCAAATTATGCGAAGT+GGG - chr5_2:61045146-61045165 Msa0779690:CDS 35.0%
ATTATGCGAAGTGGGAAATT+AGG - chr5_2:61045154-61045173 Msa0779690:CDS 35.0%
ACGATGTAGAACATGATTCA+AGG - chr5_2:61045189-61045208 Msa0779690:CDS 35.0%
! CCCATTCCCTTTTATTATGT+TGG - chr5_2:61045239-61045258 Msa0779690:CDS 35.0%
! CTATCCTGCTATAGCATTTT+TGG - chr5_2:61045902-61045921 Msa0779690:CDS 35.0%
! ATCCTGCTATAGCATTTTTG+GGG - chr5_2:61045904-61045923 Msa0779690:CDS 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr5_2:61045944-61045963 None:intergenic 35.0%
CTATCCGCTATTAACTACTA+TGG - chr5_2:61045944-61045963 Msa0779690:CDS 35.0%
CAGACCATAGTAGTTAATAG+CGG + chr5_2:61045951-61045970 None:intergenic 35.0%
TTGTATTTGATTCAGCCAGA+AGG + chr5_2:61046064-61046083 None:intergenic 35.0%
GATGCACTAATTGCACAAAA+AGG + chr5_2:61046112-61046131 None:intergenic 35.0%
GAGAAATTCAAGATGACTAC+TGG - chr5_2:61046300-61046319 Msa0779690:five_prime_UTR 35.0%
AGATGACTACTGGCAATTTA+AGG - chr5_2:61046310-61046329 Msa0779690:five_prime_UTR 35.0%
! TGCTAACTGTAGTTTGAGAT+TGG + chr5_2:61046368-61046387 None:intergenic 35.0%
AACTACAGTTAGCATTCATG+CGG - chr5_2:61046374-61046393 Msa0779690:five_prime_UTR 35.0%
!!! ATTTTTAGTAAGGCGTCAAG+TGG - chr5_2:61046456-61046475 Msa0779690:five_prime_UTR 35.0%
TTTAGTCATATGTGCTTCAG+AGG + chr5_2:61046661-61046680 None:intergenic 35.0%
!! CTTGGCAGTTCACTTTTAAA+TGG + chr5_2:61046756-61046775 None:intergenic 35.0%
GAAATCTTGCTGGTAAAGAA+AGG - chr5_2:61046832-61046851 Msa0779690:five_prime_UTR 35.0%
CATGTTTACTGGATCTTGAA+CGG + chr5_2:61047007-61047026 None:intergenic 35.0%
AAGATCCAGTAAACATGAAG+AGG - chr5_2:61047010-61047029 Msa0779690:five_prime_UTR 35.0%
CAACGACAAGTATTCTCATA+GGG - chr5_2:61047202-61047221 Msa0779690:five_prime_UTR 35.0%
!!! CATCAACATGGCTCTAATTT+TGG + chr5_2:61047744-61047763 None:intergenic 35.0%
CAAAATTAGAGCCATGTTGA+TGG - chr5_2:61047742-61047761 Msa0779690:five_prime_UTR 35.0%
TATTCCTACGCTAATAGGGT+GGG + chr5_2:61042087-61042106 None:intergenic 40.0%
TTATTCCTACGCTAATAGGG+TGG + chr5_2:61042088-61042107 None:intergenic 40.0%
! CTAAGGGTGTGTTTGTTTCA+AGG + chr5_2:61042249-61042268 None:intergenic 40.0%
CTTGAAACAAACACACCCTT+AGG - chr5_2:61042247-61042266 Msa0779690:CDS 40.0%
! ACCTCGTGAATAAGGCATTA+AGG - chr5_2:61042318-61042337 Msa0779690:CDS 40.0%
! ACCTTAATGCCTTATTCACG+AGG + chr5_2:61042322-61042341 None:intergenic 40.0%
ACAAGTAGGCCTATTGTTCA+TGG - chr5_2:61042561-61042580 Msa0779690:CDS 40.0%
TGGAACTGATGTGTTGAAGA+TGG - chr5_2:61042664-61042683 Msa0779690:CDS 40.0%
CTGATGTGTTGAAGATGGTT+TGG - chr5_2:61042669-61042688 Msa0779690:CDS 40.0%
ACAGAACTGTTATAAGGGTG+TGG + chr5_2:61042698-61042717 None:intergenic 40.0%
GTGGCACCTGAAATTGTATA+TGG + chr5_2:61042827-61042846 None:intergenic 40.0%
! CAGTTAAACAGAAGAGTGTG+TGG + chr5_2:61042846-61042865 None:intergenic 40.0%
GACTCGTTAGAGATCTGAAT+CGG + chr5_2:61042976-61042995 None:intergenic 40.0%
CCAAACTGAACCCAAAGAAT+AGG + chr5_2:61043219-61043238 None:intergenic 40.0%
! CCTATTCTTTGGGTTCAGTT+TGG - chr5_2:61043216-61043235 Msa0779690:CDS 40.0%
ATACAAACTGAACCATGACG+AGG - chr5_2:61043245-61043264 Msa0779690:CDS 40.0%
ACTTGTTCATGCTCGTTTGT+AGG + chr5_2:61043271-61043290 None:intergenic 40.0%
! CTCTTTTCACGGTGGTTTTT+TGG - chr5_2:61043377-61043396 Msa0779690:CDS 40.0%
CATGTGTCAGACTACAAGTA+AGG - chr5_2:61043493-61043512 Msa0779690:intron 40.0%
ATCATTGTCCTTTGTCTCAG+TGG + chr5_2:61043725-61043744 None:intergenic 40.0%
!! AAGGACAATGATACTGACTC+TGG - chr5_2:61043733-61043752 Msa0779690:intron 40.0%
! CTTTCTGGTACTGGAAAGTT+GGG + chr5_2:61043766-61043785 None:intergenic 40.0%
! TGAAGTAAGCTTTCTGGTAC+TGG + chr5_2:61043775-61043794 None:intergenic 40.0%
! TCATCCCATTTTCTCACAAG+AGG + chr5_2:61044075-61044094 None:intergenic 40.0%
!! ATTTTAAAGAGGGTCTTGCC+AGG + chr5_2:61044204-61044223 None:intergenic 40.0%
ATCTGATGTAGCTTCTCGTT+TGG + chr5_2:61044300-61044319 None:intergenic 40.0%
GCAATGTTTGTCAGCAAACA+TGG - chr5_2:61044333-61044352 Msa0779690:intron 40.0%
TACGGATGAAGATGATGATC+AGG + chr5_2:61044423-61044442 None:intergenic 40.0%
TCTTTGCTTGGATCTGTCTA+TGG - chr5_2:61044555-61044574 Msa0779690:intron 40.0%
CTATGGAAATGAAGAGGATG+AGG - chr5_2:61044572-61044591 Msa0779690:intron 40.0%
AGAAATGCTTCCATCCTTCT+TGG + chr5_2:61044712-61044731 None:intergenic 40.0%
! GACTGATTCCGCTTTATAAC+AGG + chr5_2:61044765-61044784 None:intergenic 40.0%
TTAAGACAGCCATTTCAGCT+AGG - chr5_2:61044796-61044815 Msa0779690:CDS 40.0%
CGATTAGAAGGCAGAAGAAA+TGG + chr5_2:61045032-61045051 None:intergenic 40.0%
AGTTCTTCAAACTGCTGAAG+AGG - chr5_2:61045073-61045092 Msa0779690:CDS 40.0%
GTGGTTCAAATTATGCGAAG+TGG - chr5_2:61045145-61045164 Msa0779690:CDS 40.0%
TGGCTCATAGTAGTCAATAG+CGG - chr5_2:61045373-61045392 Msa0779690:intron 40.0%
TAGAGGAACATTTACAGCAG+AGG + chr5_2:61045630-61045649 None:intergenic 40.0%
!!! TGCTATAGCATTTTTGGGGT+CGG - chr5_2:61045908-61045927 Msa0779690:CDS 40.0%
CGCTATTAACTACTATGGTC+TGG - chr5_2:61045949-61045968 Msa0779690:CDS 40.0%
ACAGTCTAAGTTACAAGGCA+AGG - chr5_2:61046209-61046228 Msa0779690:five_prime_UTR 40.0%
CAGTCTAAGTTACAAGGCAA+GGG - chr5_2:61046210-61046229 Msa0779690:five_prime_UTR 40.0%
TTCTGACCTACCAAATGACA+TGG - chr5_2:61046269-61046288 Msa0779690:five_prime_UTR 40.0%
GACTACTGGCAATTTAAGGA+AGG - chr5_2:61046314-61046333 Msa0779690:five_prime_UTR 40.0%
ACTGGCAATTTAAGGAAGGA+TGG - chr5_2:61046318-61046337 Msa0779690:five_prime_UTR 40.0%
! AGTTTGAGATTGGCTGTCTT+TGG + chr5_2:61046358-61046377 None:intergenic 40.0%
TATTCTTCAGGCAGCTACTA+GGG - chr5_2:61046410-61046429 Msa0779690:five_prime_UTR 40.0%
!! CAGCTACTAGGGGTATTAAA+AGG - chr5_2:61046421-61046440 Msa0779690:five_prime_UTR 40.0%
!!! CACTTTTTCTGCAATAGCCT+TGG + chr5_2:61046610-61046629 None:intergenic 40.0%
CAAGGCTATTGCAGAAAAAG+TGG - chr5_2:61046608-61046627 Msa0779690:five_prime_UTR 40.0%
TTCGCAGCCATGATAAAAAG+TGG - chr5_2:61046723-61046742 Msa0779690:five_prime_UTR 40.0%
CCATGATAAAAAGTGGAGCT+GGG - chr5_2:61046730-61046749 Msa0779690:five_prime_UTR 40.0%
GCTGAGATTAGAAATCTTGC+TGG - chr5_2:61046822-61046841 Msa0779690:five_prime_UTR 40.0%
ATCCAGTAAACATGAAGAGG+AGG - chr5_2:61047013-61047032 Msa0779690:five_prime_UTR 40.0%
TTCCTCCTCTTCATGTTTAC+TGG + chr5_2:61047018-61047037 None:intergenic 40.0%
!!! ACGTGATCGATGCTTTTTTC+TGG + chr5_2:61047102-61047121 None:intergenic 40.0%
ATGAGAATACTTGTCGTTGG+AGG + chr5_2:61047201-61047220 None:intergenic 40.0%
CCTATGAGAATACTTGTCGT+TGG + chr5_2:61047204-61047223 None:intergenic 40.0%
CCAACGACAAGTATTCTCAT+AGG - chr5_2:61047201-61047220 Msa0779690:five_prime_UTR 40.0%
AGTATTCTCATAGGGAGAGT+AGG - chr5_2:61047210-61047229 Msa0779690:five_prime_UTR 40.0%
TACGTGAATGTCTATGCTCA+TGG + chr5_2:61047358-61047377 None:intergenic 40.0%
TATGCTTTGTCTTTCTGCTC+CGG + chr5_2:61047541-61047560 None:intergenic 40.0%
GAAAGACAAAGCATAAGAGC+AGG - chr5_2:61047546-61047565 Msa0779690:five_prime_UTR 40.0%
AATTCCCACCCTATTAGCGT+AGG - chr5_2:61042080-61042099 Msa0779690:CDS 45.0%
CCAACTAAAGCACATAACGC+AGG + chr5_2:61042362-61042381 None:intergenic 45.0%
CCTGCGTTATGTGCTTTAGT+TGG - chr5_2:61042359-61042378 Msa0779690:CDS 45.0%
ATTTGAACCGCAACTTGGCA+AGG + chr5_2:61042875-61042894 None:intergenic 45.0%
GACCCCTGAGTTTCAATTGT+AGG - chr5_2:61042911-61042930 Msa0779690:CDS 45.0%
TTAGAGATCTGAATCGGCGA+TGG + chr5_2:61042970-61042989 None:intergenic 45.0%
! TTGGCTGCTGGCTATTAAGT+TGG - chr5_2:61043345-61043364 Msa0779690:CDS 45.0%
! TAGCTTGTCCACTGAGACAA+AGG - chr5_2:61043714-61043733 Msa0779690:intron 45.0%
! GCTTTCTGGTACTGGAAAGT+TGG + chr5_2:61043767-61043786 None:intergenic 45.0%
!! GGAAAAAAGGTGCCTGTGAA+TGG + chr5_2:61043988-61044007 None:intergenic 45.0%
TGATGTAGCTTCTCGTTTGG+AGG + chr5_2:61044297-61044316 None:intergenic 45.0%
GAAGATGATGATCAGGCATC+AGG + chr5_2:61044416-61044435 None:intergenic 45.0%
AAACGATGCAGGCTCAACTT+TGG - chr5_2:61044488-61044507 Msa0779690:intron 45.0%
CAAGAATAGAAGTCAGGAGC+TGG - chr5_2:61044512-61044531 Msa0779690:intron 45.0%
GGAAATGAAGAGGATGAGGA+TGG - chr5_2:61044576-61044595 Msa0779690:intron 45.0%
CTTGAGAGAAACGCACATGT+GGG - chr5_2:61044621-61044640 Msa0779690:CDS 45.0%
! CTGCTACTTCTGCATCATCA+GGG - chr5_2:61044655-61044674 Msa0779690:CDS 45.0%
! TGCTACTTCTGCATCATCAG+GGG - chr5_2:61044656-61044675 Msa0779690:CDS 45.0%
ATCTTCAGATGCAGCCAAGA+AGG - chr5_2:61044695-61044714 Msa0779690:CDS 45.0%
ACCATTAGACCCTGAATCTG+AGG + chr5_2:61044838-61044857 None:intergenic 45.0%
TCAGATGGAGGTTCAACAAC+AGG + chr5_2:61044909-61044928 None:intergenic 45.0%
TGAGTCTGTTCTTGCTGAAC+AGG - chr5_2:61044986-61045005 Msa0779690:CDS 45.0%
GAGCAAACACGACAAAGTAG+AGG + chr5_2:61045647-61045666 None:intergenic 45.0%
AGAGAGAGCAGAATGGAGTT+TGG + chr5_2:61045758-61045777 None:intergenic 45.0%
CAGAAACAGAGAGAGCAGAA+TGG + chr5_2:61045765-61045784 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+AGG + chr5_2:61045909-61045928 None:intergenic 45.0%
GGTAGGTCAGAACTCATAGA+CGG + chr5_2:61046261-61046280 None:intergenic 45.0%
ACCTACCAAATGACATGGAC+CGG - chr5_2:61046274-61046293 Msa0779690:five_prime_UTR 45.0%
TCTTTCCGGTCCATGTCATT+TGG + chr5_2:61046282-61046301 None:intergenic 45.0%
! GATTGGCTGTCTTTGGAAGT+TGG + chr5_2:61046351-61046370 None:intergenic 45.0%
TACAGTTAGCATTCATGCGG+CGG - chr5_2:61046377-61046396 Msa0779690:five_prime_UTR 45.0%
CTATTCTTCAGGCAGCTACT+AGG - chr5_2:61046409-61046428 Msa0779690:five_prime_UTR 45.0%
ATTCTTCAGGCAGCTACTAG+GGG - chr5_2:61046411-61046430 Msa0779690:five_prime_UTR 45.0%
! AGTAAGGCGTCAAGTGGTAA+TGG - chr5_2:61046462-61046481 Msa0779690:five_prime_UTR 45.0%
AATTCCCACCATCACTTCCA+AGG + chr5_2:61046494-61046513 None:intergenic 45.0%
TCTGCATTCAGATTGCGATG+TGG + chr5_2:61046564-61046583 None:intergenic 45.0%
ACATCGCAATCTGAATGCAG+AGG - chr5_2:61046563-61046582 Msa0779690:five_prime_UTR 45.0%
GCCATGATAAAAAGTGGAGC+TGG - chr5_2:61046729-61046748 Msa0779690:five_prime_UTR 45.0%
!!! CCCAGCTCCACTTTTTATCA+TGG + chr5_2:61046733-61046752 None:intergenic 45.0%
GGCTCAACAGATAAAGCTCT+TGG + chr5_2:61046774-61046793 None:intergenic 45.0%
CTTGCTGGTAAAGAAAGGGA+AGG - chr5_2:61046837-61046856 Msa0779690:five_prime_UTR 45.0%
ACATGAAGAGGAGGAAGAAG+AGG - chr5_2:61047022-61047041 Msa0779690:five_prime_UTR 45.0%
ATGCAGACAGTGACAGAAAC+AGG - chr5_2:61047150-61047169 Msa0779690:five_prime_UTR 45.0%
AGAATACTTGTCGTTGGAGG+AGG + chr5_2:61047198-61047217 None:intergenic 45.0%
! AGAGCGGTGTTTTTCATCAG+AGG + chr5_2:61047300-61047319 None:intergenic 45.0%
! CTGATGATGAGCATAGTCAC+CGG - chr5_2:61047519-61047538 Msa0779690:five_prime_UTR 45.0%
AGACAAGTCACAAGTAAGCG+AGG - chr5_2:61047619-61047638 Msa0779690:five_prime_UTR 45.0%
AAGTCACAAGTAAGCGAGGT+TGG - chr5_2:61047623-61047642 Msa0779690:five_prime_UTR 45.0%
AGTCACAAGTAAGCGAGGTT+GGG - chr5_2:61047624-61047643 Msa0779690:five_prime_UTR 45.0%
GTTACTTCAGGTGACTGAGA+GGG + chr5_2:61047698-61047717 None:intergenic 45.0%
AGTTACTTCAGGTGACTGAG+AGG + chr5_2:61047699-61047718 None:intergenic 45.0%
!!! AATACAATAATTTTTTTATT+TGG - chr5_2:61046077-61046096 Msa0779690:intron 5.0%
!!! ATACAATAATTTTTTTATTT+GGG - chr5_2:61046078-61046097 Msa0779690:intron 5.0%
GATTCCACCTTGCCAAGTTG+CGG - chr5_2:61042865-61042884 Msa0779690:CDS 50.0%
CTCGGATTTGAACCGCAACT+TGG + chr5_2:61042880-61042899 None:intergenic 50.0%
!!! TTCGGTGCAATTTTGGCTGC+TGG - chr5_2:61043333-61043352 Msa0779690:CDS 50.0%
TCAGGTGCAGTGAGTTCATC+AGG - chr5_2:61043658-61043677 Msa0779690:intron 50.0%
GACTCAAGGTAGCCATTCAC+AGG - chr5_2:61043973-61043992 Msa0779690:intron 50.0%
TTAAAGAGGGTCTTGCCAGG+CGG + chr5_2:61044201-61044220 None:intergenic 50.0%
GGCATCAGGAACCCAAATGT+TGG + chr5_2:61044402-61044421 None:intergenic 50.0%
AGTCAGGAGCTGGATCAAAC+AGG - chr5_2:61044522-61044541 Msa0779690:intron 50.0%
! GGAGGTGCATTGTCTTTGCT+TGG - chr5_2:61044543-61044562 Msa0779690:intron 50.0%
CCACATGTGCGTTTCTCTCA+AGG + chr5_2:61044623-61044642 None:intergenic 50.0%
CCTTGAGAGAAACGCACATG+TGG - chr5_2:61044620-61044639 Msa0779690:CDS 50.0%
! GCTGCTACTTCTGCATCATC+AGG - chr5_2:61044654-61044673 Msa0779690:CDS 50.0%
TCAGATGCAGCCAAGAAGGA+TGG - chr5_2:61044699-61044718 Msa0779690:CDS 50.0%
ACAGGAGTTGCCTCAGATTC+AGG - chr5_2:61044825-61044844 Msa0779690:CDS 50.0%
CAGGAGTTGCCTCAGATTCA+GGG - chr5_2:61044826-61044845 Msa0779690:CDS 50.0%
GCCTCAGATTCAGGGTCTAA+TGG - chr5_2:61044834-61044853 Msa0779690:CDS 50.0%
AACAGGATCGTGCTCATGGA+AGG - chr5_2:61045003-61045022 Msa0779690:CDS 50.0%
TATCTCACACCGCAACGCTA+TGG + chr5_2:61045460-61045479 None:intergenic 50.0%
! TCCGGTCCATGTCATTTGGT+AGG + chr5_2:61046278-61046297 None:intergenic 50.0%
AGCTGCCTGAAGAATAGCTG+CGG + chr5_2:61046406-61046425 None:intergenic 50.0%
!! GCGTCAAGTGGTAATGGTCA+AGG - chr5_2:61046468-61046487 Msa0779690:five_prime_UTR 50.0%
!! AGTGGTAATGGTCAAGGCCT+TGG - chr5_2:61046474-61046493 Msa0779690:five_prime_UTR 50.0%
AAGGCCTTGGAAGTGATGGT+GGG - chr5_2:61046487-61046506 Msa0779690:five_prime_UTR 50.0%
GTGGGAATTTGTCCAGCTCT+CGG - chr5_2:61046505-61046524 Msa0779690:five_prime_UTR 50.0%
TTTGCCGTCATCTCAACTGC+AGG - chr5_2:61046530-61046549 Msa0779690:five_prime_UTR 50.0%
TTGCCGTCATCTCAACTGCA+GGG - chr5_2:61046531-61046550 Msa0779690:five_prime_UTR 50.0%
AGACCCTGCAGTTGAGATGA+CGG + chr5_2:61046537-61046556 None:intergenic 50.0%
TGCTTCTGTTCCAGTTGCCA+AGG - chr5_2:61046590-61046609 Msa0779690:five_prime_UTR 50.0%
! TCTGCAATAGCCTTGGCAAC+TGG + chr5_2:61046603-61046622 None:intergenic 50.0%
AAAGTGGCTATTGCAGCAGC+AGG - chr5_2:61046624-61046643 Msa0779690:five_prime_UTR 50.0%
GAACCTGAAAGTCCAGAGCT+CGG + chr5_2:61046798-61046817 None:intergenic 50.0%
GTCGATCTCCACACAGAAGT+CGG - chr5_2:61047120-61047139 Msa0779690:five_prime_UTR 50.0%
TCGATCTCCACACAGAAGTC+GGG - chr5_2:61047121-61047140 Msa0779690:five_prime_UTR 50.0%
CAGACAGTGACAGAAACAGG+CGG - chr5_2:61047153-61047172 Msa0779690:five_prime_UTR 50.0%
! CATGATGACGTCGAGAAGAG+CGG + chr5_2:61047316-61047335 None:intergenic 50.0%
TCTTCTCGACGTCATCATGG+AGG - chr5_2:61047317-61047336 Msa0779690:five_prime_UTR 50.0%
CTTCTCGACGTCATCATGGA+GGG - chr5_2:61047318-61047337 Msa0779690:five_prime_UTR 50.0%
CAGGTCTCATGCTGAAAGAG+AGG - chr5_2:61047565-61047584 Msa0779690:five_prime_UTR 50.0%
TGCTGAAAGAGAGGCAGAGT+TGG - chr5_2:61047574-61047593 Msa0779690:five_prime_UTR 50.0%
TGAAAGAGAGGCAGAGTTGG+AGG - chr5_2:61047577-61047596 Msa0779690:five_prime_UTR 50.0%
TGAACCGCAACTTGGCAAGG+TGG + chr5_2:61042872-61042891 None:intergenic 55.0%
CTCGTTTGTAGGCCTCGTCA+TGG + chr5_2:61043260-61043279 None:intergenic 55.0%
ATCATGAAAAGGGGCCGTGC+AGG - chr5_2:61044015-61044034 Msa0779690:intron 55.0%
CCATCCTAATCCCACCTGCA+CGG + chr5_2:61044032-61044051 None:intergenic 55.0%
GTAGCTTCTCGTTTGGAGGC+TGG + chr5_2:61044293-61044312 None:intergenic 55.0%
CAGGAGCTGGATCAAACAGG+AGG - chr5_2:61044525-61044544 Msa0779690:intron 55.0%
GCTGAACAGGATCGTGCTCA+TGG - chr5_2:61044999-61045018 Msa0779690:CDS 55.0%
!! TGGCTTGTTGCGTAGTGCTC+CGG + chr5_2:61045440-61045459 None:intergenic 55.0%
CGCAACAAGCCATAGCGTTG+CGG - chr5_2:61045448-61045467 Msa0779690:intron 55.0%
AGCGTTGCGGTGTGAGATAG+CGG - chr5_2:61045461-61045480 Msa0779690:intron 55.0%
GAACTCATAGACGGATCCGC+TGG + chr5_2:61046252-61046271 None:intergenic 55.0%
GGTCAAGGCCTTGGAAGTGA+TGG - chr5_2:61046483-61046502 Msa0779690:five_prime_UTR 55.0%
CAAGGCCTTGGAAGTGATGG+TGG - chr5_2:61046486-61046505 Msa0779690:five_prime_UTR 55.0%
TATTGCAGCAGCAGGTGAGG+CGG - chr5_2:61046632-61046651 Msa0779690:five_prime_UTR 55.0%
AGAGGAGGAAGAAGAGGACG+AGG - chr5_2:61047028-61047047 Msa0779690:five_prime_UTR 55.0%
TCCACACAGAAGTCGGGACA+GGG - chr5_2:61047127-61047146 Msa0779690:five_prime_UTR 55.0%
TAGGCATGACAGCTCCTCTG+AGG - chr5_2:61047229-61047248 Msa0779690:five_prime_UTR 55.0%
! CATGACAGCTCCTCTGAGGA+GGG - chr5_2:61047233-61047252 Msa0779690:five_prime_UTR 55.0%
!! AGGGTGAGCATCGACACTTG+AGG - chr5_2:61047252-61047271 Msa0779690:five_prime_UTR 55.0%
CGCTCTTCTCGACGTCATCA+TGG - chr5_2:61047314-61047333 Msa0779690:five_prime_UTR 55.0%
AAGAGAGGCAGAGTTGGAGG+AGG - chr5_2:61047580-61047599 Msa0779690:five_prime_UTR 55.0%
AGAGAGGCAGAGTTGGAGGA+GGG - chr5_2:61047581-61047600 Msa0779690:five_prime_UTR 55.0%
CACAAGTAAGCGAGGTTGGG+CGG - chr5_2:61047627-61047646 Msa0779690:five_prime_UTR 55.0%
ACAAGTAAGCGAGGTTGGGC+GGG - chr5_2:61047628-61047647 Msa0779690:five_prime_UTR 55.0%
AGGGGTCTCGCTGTACGACT+CGG + chr5_2:61042898-61042917 None:intergenic 60.0%
ATGAAAAGGGGCCGTGCAGG+TGG - chr5_2:61044018-61044037 Msa0779690:intron 60.0%
TGAAAAGGGGCCGTGCAGGT+GGG - chr5_2:61044019-61044038 Msa0779690:intron 60.0%
CCGTGCAGGTGGGATTAGGA+TGG - chr5_2:61044029-61044048 Msa0779690:intron 60.0%
GGCCAATAGCGCCGCTATAG+CGG - chr5_2:61045394-61045413 Msa0779690:intron 60.0%
! GTTGCGGTGTGAGATAGCGG+CGG - chr5_2:61045464-61045483 Msa0779690:intron 60.0%
! CTGCCAGAAGCACACTCCAG+CGG - chr5_2:61046233-61046252 Msa0779690:five_prime_UTR 60.0%
GATCCGCTGGAGTGTGCTTC+TGG + chr5_2:61046239-61046258 None:intergenic 60.0%
GGCAGCCGCAGCTATTCTTC+AGG - chr5_2:61046398-61046417 Msa0779690:five_prime_UTR 60.0%
TGACGGCAAACTCCGAGAGC+TGG + chr5_2:61046520-61046539 None:intergenic 60.0%
GGCTATTGCAGCAGCAGGTG+AGG - chr5_2:61046629-61046648 Msa0779690:five_prime_UTR 60.0%
TCTGTTGAGCCACCGAGCTC+TGG - chr5_2:61046783-61046802 Msa0779690:five_prime_UTR 60.0%
CCTGAAAGTCCAGAGCTCGG+TGG + chr5_2:61046795-61046814 None:intergenic 60.0%
!! CCACCGAGCTCTGGACTTTC+AGG - chr5_2:61046792-61046811 Msa0779690:five_prime_UTR 60.0%
CTCCACACAGAAGTCGGGAC+AGG - chr5_2:61047126-61047145 Msa0779690:five_prime_UTR 60.0%
TCCCTGTCCCGACTTCTGTG+TGG + chr5_2:61047131-61047150 None:intergenic 60.0%
! GCATGACAGCTCCTCTGAGG+AGG - chr5_2:61047232-61047251 Msa0779690:five_prime_UTR 60.0%
TCGATGCTCACCCTCCTCAG+AGG + chr5_2:61047246-61047265 None:intergenic 60.0%
GAGAGGCAGAGTTGGAGGAG+GGG - chr5_2:61047582-61047601 Msa0779690:five_prime_UTR 60.0%
AGAGGCAGAGTTGGAGGAGG+GGG - chr5_2:61047583-61047602 Msa0779690:five_prime_UTR 60.0%
GGCCGCTATAGCGGCGCTAT+TGG + chr5_2:61045399-61045418 None:intergenic 65.0%
GGCGGTGCAACGCTTCGTTG+CGG - chr5_2:61045482-61045501 Msa0779690:intron 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr5_2:61045934-61045953 None:intergenic 65.0%
GGGGCCGTGCAGGTGGGATT+AGG - chr5_2:61044025-61044044 Msa0779690:intron 70.0%
GCATCGCGCGGCCGCTATAG+CGG + chr5_2:61045408-61045427 None:intergenic 70.0%
GCTATAGCGGCCGCGCGATG+CGG - chr5_2:61045407-61045426 Msa0779690:intron 70.0%
!! CGAGGTTGGGCGGGCTAGCA+GGG - chr5_2:61047637-61047656 Msa0779690:five_prime_UTR 70.0%
!! GCGAGGTTGGGCGGGCTAGC+AGG - chr5_2:61047636-61047655 Msa0779690:five_prime_UTR 75.0%
!! GGTTGGGCGGGCTAGCAGGG+AGG - chr5_2:61047640-61047659 Msa0779690:five_prime_UTR 75.0%
! AGCGGCCGCGCGATGCGGTG+CGG - chr5_2:61045412-61045431 Msa0779690:intron 80.0%
! CGGCACCGCACCGCATCGCG+CGG + chr5_2:61045420-61045439 None:intergenic 80.0%
! CGCGCGATGCGGTGCGGTGC+CGG - chr5_2:61045418-61045437 Msa0779690:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 61041904 61047772 61041904 ID=Msa0779690;Name=Msa0779690
chr5_2 mRNA 61041904 61047772 61041904 ID=Msa0779690-mRNA-1;Parent=Msa0779690;Name=Msa0779690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1566|0.5|0.4|1|0.5|0|5|0|848
chr5_2 exon 61041904 61043463 61041904 ID=Msa0779690-mRNA-1:exon:17957;Parent=Msa0779690-mRNA-1
chr5_2 exon 61044582 61045227 61044582 ID=Msa0779690-mRNA-1:exon:17956;Parent=Msa0779690-mRNA-1
chr5_2 exon 61045237 61045382 61045237 ID=Msa0779690-mRNA-1:exon:17955;Parent=Msa0779690-mRNA-1
chr5_2 exon 61045875 61046026 61045875 ID=Msa0779690-mRNA-1:exon:17954;Parent=Msa0779690-mRNA-1
chr5_2 exon 61046167 61047772 61046167 ID=Msa0779690-mRNA-1:exon:17953;Parent=Msa0779690-mRNA-1
chr5_2 five_prime_UTR 61046207 61047772 61046207 ID=Msa0779690-mRNA-1:five_prime_utr;Parent=Msa0779690-mRNA-1
chr5_2 CDS 61046167 61046206 61046167 ID=Msa0779690-mRNA-1:cds;Parent=Msa0779690-mRNA-1
chr5_2 CDS 61045875 61046026 61045875 ID=Msa0779690-mRNA-1:cds;Parent=Msa0779690-mRNA-1
chr5_2 CDS 61045237 61045382 61045237 ID=Msa0779690-mRNA-1:cds;Parent=Msa0779690-mRNA-1
chr5_2 CDS 61044582 61045227 61044582 ID=Msa0779690-mRNA-1:cds;Parent=Msa0779690-mRNA-1
chr5_2 CDS 61041904 61043463 61041904 ID=Msa0779690-mRNA-1:cds;Parent=Msa0779690-mRNA-1
Gene Sequence

>Msa0779690

ATGCAATCTAATATGCTACGGTTCATGTGTCAGACTACAAATAATGATTCAGGTGCAGTGAGTTCATCAGGCTATCGTGCTGTTGCATTTTCATATGAAAATTCTAGCTTGTCCACTGAGACAAAGGACAATGATACTGACTCTGGTTTTCGTCCCAACTTTCCAGTACCAGAAAGCTTACTTCATAATCTGCCTCCAAACGAGAAGCTACATCAGATTATTTCAAAGACTGCAATGTTTGTCAGCAAACATGGAAGCCAATCAGAAATTATTCTGAGAGTGAAACAAGGAGATAATCCAACATTTGGGTTCCTGATGCCTGATCATCATCTTCATCCGTTTTTTGTTGATCATCAAGAACTTCTGAAAGATGACAAAAACGATGCAGGCTCAACTTTGGACAAGAATAGAAGTCAGGAGCTGGATCAAACAGGAGGTGCATTGTCTTTGCTTGGATCTGTCTATGGAAATGAAGAGGATGAGGATGGTCCAACTGAAAATACTAGTGACCTTGAGAGAAACGCACATGTGGGAGCTGTTGATGCTGCTACTTCTGCATCATCAGGGGTAGAGCAAGCACAATCATCTTCAGATGCAGCCAAGAAGGATGGAAGCATTTCTAAAAACCAAATACCTTTGAAAGAAAAAGTTCCTGTTATAAAGCGGAATCAGTCTATCAGTATTGTTAAGACAGCCATTTCAGCTAGGACAAAAACAGGAGTTGCCTCAGATTCAGGGTCTAATGGTGCAAATAAATCACAGACTTCTGTGCCCAGTACATCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTAAAGATAGTTATTGATAAAATAGTTGAGTTCATCTTAAAAAATGGAAGGCAATTTGAGTCTGTTCTTGCTGAACAGGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCTTCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGTCTAAGTTACAAGGCAAGGGCTGCCAGAAGCACACTCCAGCGGATCCGTCTATGAGTTCTGACCTACCAAATGACATGGACCGGAAAGAGAAATTCAAGATGACTACTGGCAATTTAAGGAAGGATGGTCAAGATCCAACTTCCAAAGACAGCCAATCTCAAACTACAGTTAGCATTCATGCGGCGGCAGCCGCAGCTATTCTTCAGGCAGCTACTAGGGGTATTAAAAGGCCTAATTTAGAAATTTTTAGTAAGGCGTCAAGTGGTAATGGTCAAGGCCTTGGAAGTGATGGTGGGAATTTGTCCAGCTCTCGGAGTTTGCCGTCATCTCAACTGCAGGGTCTTGTTCCACATCGCAATCTGAATGCAGAGGCTCATGCTTCTGTTCCAGTTGCCAAGGCTATTGCAGAAAAAGTGGCTATTGCAGCAGCAGGTGAGGCGGACTCCTCTGAAGCACATATGACTAAAGAGCAAAAGCTTAAAGCAGAGAGATTGAAACGAGCAAAGATGTTCGCAGCCATGATAAAAAGTGGAGCTGGGCCATTTAAAAGTGAACTGCCAAGAGCTTTATCTGTTGAGCCACCGAGCTCTGGACTTTCAGGTTCAGATGCTGAGATTAGAAATCTTGCTGGTAAAGAAAGGGAAGGAAGTTCTGTTCCATTCAATACTGATAACTCAGATAAAAGTCACAAGTCTGAGGAAAAGCTTTCTGATGATAATTCAGATAAAAGTCACAAGTCTGAAGAAAAACTTACTGTTGATAATAATGAAAGGCGATCAAAAAGGAAGTACCGTTCAAGATCCAGTAAACATGAAGAGGAGGAAGAAGAGGACGAGGATGATGAAGAAGAAGAAAATGAAGAAGATACAAGGGATCACAAAAGATCCAGAAAAAAGCATCGATCACGTCGATCTCCACACAGAAGTCGGGACAGGGATGCAGACAGTGACAGAAACAGGCGGAAGCACAAGAGAAGAGATTCCTCCTCCAACGACAAGTATTCTCATAGGGAGAGTAGGCATGACAGCTCCTCTGAGGAGGGTGAGCATCGACACTTGAGGCATCAACGTAGATATGAAAGCTCCTCTGATGAAAAACACCGCTCTTCTCGACGTCATCATGGAGGGAGCAAGTTGTCAGACCATGAGCATAGACATTCACGTAAACGTTATAGTTCATCTGATGATGAGCATAGACATTCACGTAAACGTTATAGTTCATCTGATGATGAGCATAGACATTCGCGTAAACATTATAGTTCATCTGATGATGAGCATAGACATTCGCGTAAACATTATAGTTCATCTGATGATGAGCATAGTCACCGGAGCAGAAAGACAAAGCATAAGAGCAGGTCTCATGCTGAAAGAGAGGCAGAGTTGGAGGAGGGGGAAATAGTGAAATCAGACAAGTCACAAGTAAGCGAGGTTGGGCGGGCTAGCAGGGAGGCTTCTGCTGAATTATTTAAGTCGACAAGGGCACCCTCTCAGTCACCTGAAGTAACTAATGTTTCTGATGAGCTTAGAGCCAAAATTAGAGCCATGTTGATGGAAAATTTG
Protein sequence

>Msa0779690

MQSNMLRFMCQTTNNDSGAVSSSGYRAVAFSYENSSLSTETKDNDTDSGFRPNFPVPESLLHNLPPNEKLHQIISKTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPFFVDHQELLKDDKNDAGSTLDKNRSQELDQTGGALSLLGSVYGNEEDEDGPTENTSDLERNAHVGAVDAATSASSGVEQAQSSSDAAKKDGSISKNQIPLKEKVPVIKRNQSISIVKTAISARTKTGVASDSGSNGANKSQTSVPSTSKIELPVVEPPSDLKIVIDKIVEFILKNGRQFESVLAEQDRAHGRFPFLLPSNRYHTYYLKVLQTAEESKLQGKGCQKHTPADPSMSSDLPNDMDRKEKFKMTTGNLRKDGQDPTSKDSQSQTTVSIHAAAAAAILQAATRGIKRPNLEIFSKASSGNGQGLGSDGGNLSSSRSLPSSQLQGLVPHRNLNAEAHASVPVAKAIAEKVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGPFKSELPRALSVEPPSSGLSGSDAEIRNLAGKEREGSSVPFNTDNSDKSHKSEEKLSDDNSDKSHKSEEKLTVDNNERRSKRKYRSRSSKHEEEEEEDEDDEEEENEEDTRDHKRSRKKHRSRRSPHRSRDRDADSDRNRRKHKRRDSSSNDKYSHRESRHDSSSEEGEHRHLRHQRRYESSSDEKHRSSRRHHGGSKLSDHEHRHSRKRYSSSDDEHRHSRKRYSSSDDEHRHSRKHYSSSDDEHRHSRKHYSSSDDEHSHRSRKTKHKSRSHAEREAELEEGEIVKSDKSQVSEVGRASREASAELFKSTRAPSQSPEVTNVSDELRAKIRAMLMENL