Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457990 | XP_013465396.1 | 92.929 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457990 | sp|F4HSD5|TRM32_ARATH | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.33e-36 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457990 | A0A072VCX1 | 92.929 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0457990 | 0.801734 | 7.830613e-49 | -8.615850e-47 |
| Msa0023330 | Msa0457990 | 0.802739 | 4.863164e-49 | -8.615850e-47 |
| Msa0034480 | Msa0457990 | 0.815763 | 7.824024e-52 | -8.615850e-47 |
| Msa0042550 | Msa0457990 | 0.807967 | 3.902355e-50 | -8.615850e-47 |
| Msa0045910 | Msa0457990 | 0.800492 | 1.405317e-48 | -8.615850e-47 |
| Msa0079130 | Msa0457990 | 0.805432 | 1.338810e-49 | -8.615850e-47 |
| Msa0081620 | Msa0457990 | 0.820618 | 6.237630e-53 | -8.615850e-47 |
| Msa0081630 | Msa0457990 | 0.810580 | 1.074111e-50 | -8.615850e-47 |
| Msa0090970 | Msa0457990 | 0.801597 | 8.351299e-49 | -8.615850e-47 |
| Msa0092410 | Msa0457990 | 0.839000 | 2.057874e-57 | -8.615850e-47 |
| Msa0102140 | Msa0457990 | 0.809909 | 1.499100e-50 | -8.615850e-47 |
| Msa0111080 | Msa0457990 | 0.800893 | 1.163801e-48 | -8.615850e-47 |
| Msa0117520 | Msa0457990 | 0.821649 | 3.608769e-53 | -8.615850e-47 |
| Msa0135410 | Msa0457990 | 0.800436 | 1.442761e-48 | -8.615850e-47 |
| Msa0138020 | Msa0457990 | 0.805205 | 1.493550e-49 | -8.615850e-47 |
| Msa0152560 | Msa0457990 | 0.827209 | 1.775374e-54 | -8.615850e-47 |
| Msa0160960 | Msa0457990 | 0.808389 | 3.171875e-50 | -8.615850e-47 |
| Msa0172080 | Msa0457990 | 0.812404 | 4.313073e-51 | -8.615850e-47 |
| Msa0173960 | Msa0457990 | 0.806082 | 9.776921e-50 | -8.615850e-47 |
| Msa0183450 | Msa0457990 | 0.804826 | 1.792694e-49 | -8.615850e-47 |
| Msa0186320 | Msa0457990 | 0.814027 | 1.898999e-51 | -8.615850e-47 |
| Msa0187830 | Msa0457990 | 0.831038 | 2.092988e-55 | -8.615850e-47 |
| Msa0197610 | Msa0457990 | 0.802864 | 4.583217e-49 | -8.615850e-47 |
| Msa0207030 | Msa0457990 | 0.801047 | 1.082435e-48 | -8.615850e-47 |
| Msa0218370 | Msa0457990 | 0.802814 | 4.691546e-49 | -8.615850e-47 |
| Msa0218460 | Msa0457990 | 0.807513 | 4.871750e-50 | -8.615850e-47 |
| Msa0222870 | Msa0457990 | 0.864798 | 9.380249e-65 | -8.615850e-47 |
| Msa0222980 | Msa0457990 | 0.944275 | 2.628089e-103 | -8.615850e-47 |
| Msa0227360 | Msa0457990 | 0.814413 | 1.560460e-51 | -8.615850e-47 |
| Msa0371950 | Msa0457990 | 0.819073 | 1.406115e-52 | -8.615850e-47 |
| Msa0386010 | Msa0457990 | 0.812018 | 5.235354e-51 | -8.615850e-47 |
| Msa0389910 | Msa0457990 | 0.804300 | 2.308542e-49 | -8.615850e-47 |
| Msa0397270 | Msa0457990 | 0.832499 | 9.127335e-56 | -8.615850e-47 |
| Msa0403490 | Msa0457990 | 0.831417 | 1.688775e-55 | -8.615850e-47 |
| Msa0414140 | Msa0457990 | 0.816757 | 4.690707e-52 | -8.615850e-47 |
| Msa0422180 | Msa0457990 | 0.821450 | 4.011315e-53 | -8.615850e-47 |
| Msa0455760 | Msa0457990 | 0.817664 | 2.932816e-52 | -8.615850e-47 |
| Msa0457990 | Msa0470540 | 0.807384 | 5.188924e-50 | -8.615850e-47 |
| Msa0457990 | Msa0496970 | 0.801463 | 8.899974e-49 | -8.615850e-47 |
| Msa0457990 | Msa0525610 | 0.822097 | 2.842447e-53 | -8.615850e-47 |
| Msa0457990 | Msa0557410 | 0.825036 | 5.833341e-54 | -8.615850e-47 |
| Msa0457990 | Msa0566350 | 0.816765 | 4.672583e-52 | -8.615850e-47 |
| Msa0457990 | Msa0566750 | 0.824529 | 7.684319e-54 | -8.615850e-47 |
| Msa0457990 | Msa0624060 | 0.800280 | 1.551921e-48 | -8.615850e-47 |
| Msa0457990 | Msa0661720 | 0.815083 | 1.108688e-51 | -8.615850e-47 |
| Msa0457990 | Msa0673120 | 0.827548 | 1.472220e-54 | -8.615850e-47 |
| Msa0457990 | Msa0705990 | 0.812879 | 3.394683e-51 | -8.615850e-47 |
| Msa0457990 | Msa0713380 | 0.826772 | 2.258450e-54 | -8.615850e-47 |
| Msa0457990 | Msa0721340 | 0.802915 | 4.471998e-49 | -8.615850e-47 |
| Msa0457990 | Msa0758260 | 0.818543 | 1.855507e-52 | -8.615850e-47 |
| Msa0457990 | Msa0763920 | 0.808780 | 2.617717e-50 | -8.615850e-47 |
| Msa0457990 | Msa0795340 | 0.827126 | 1.858250e-54 | -8.615850e-47 |
| Msa0457990 | Msa0796250 | 0.801193 | 1.010464e-48 | -8.615850e-47 |
| Msa0457990 | Msa0812950 | 0.808977 | 2.375430e-50 | -8.615850e-47 |
| Msa0457990 | Msa0828200 | 0.807204 | 5.665672e-50 | -8.615850e-47 |
| Msa0457990 | Msa0836650 | 0.813303 | 2.740277e-51 | -8.615850e-47 |
| Msa0457990 | Msa0862280 | 0.813920 | 2.004817e-51 | -8.615850e-47 |
| Msa0457990 | Msa0863720 | 0.804448 | 2.150192e-49 | -8.615850e-47 |
| Msa0457990 | Msa0894710 | 0.804626 | 1.973926e-49 | -8.615850e-47 |
| Msa0457990 | Msa0902830 | 0.821915 | 3.131975e-53 | -8.615850e-47 |
| Msa0457990 | Msa0960390 | 0.814756 | 1.310273e-51 | -8.615850e-47 |
| Msa0457990 | Msa0972810 | 0.839662 | 1.385339e-57 | -8.615850e-47 |
| Msa0457990 | Msa0981040 | 0.812721 | 3.677103e-51 | -8.615850e-47 |
| Msa0457990 | Msa0994910 | 0.812386 | 4.351080e-51 | -8.615850e-47 |
| Msa0457990 | Msa1009120 | 0.811096 | 8.303951e-51 | -8.615850e-47 |
| Msa0457990 | Msa1024680 | 0.815461 | 9.135004e-52 | -8.615850e-47 |
| Msa0457990 | Msa1026640 | 0.806417 | 8.310461e-50 | -8.615850e-47 |
| Msa0457990 | Msa1063400 | 0.837876 | 4.013362e-57 | -8.615850e-47 |
| Msa0457990 | Msa1063420 | 0.810044 | 1.401958e-50 | -8.615850e-47 |
| Msa0457990 | Msa1068480 | 0.817047 | 4.037576e-52 | -8.615850e-47 |
| Msa0457990 | Msa1096060 | 0.805698 | 1.177491e-49 | -8.615850e-47 |
| Msa0457990 | Msa1107260 | 0.817925 | 2.561199e-52 | -8.615850e-47 |
| Msa0457990 | Msa1115280 | 0.801468 | 8.879222e-49 | -8.615850e-47 |
| Msa0457990 | Msa1122150 | 0.816528 | 5.279970e-52 | -8.615850e-47 |
| Msa0457990 | Msa1143020 | 0.820361 | 7.144834e-53 | -8.615850e-47 |
| Msa0457990 | Msa1150900 | 0.820367 | 7.120938e-53 | -8.615850e-47 |
| Msa0457990 | Msa1160560 | 0.813958 | 1.966321e-51 | -8.615850e-47 |
| Msa0457990 | Msa1173490 | 0.816672 | 4.901835e-52 | -8.615850e-47 |
| Msa0457990 | Msa1207310 | 0.801871 | 7.338517e-49 | -8.615850e-47 |
| Msa0457990 | Msa1209190 | 0.811905 | 5.540972e-51 | -8.615850e-47 |
| Msa0457990 | Msa1209860 | 0.814368 | 1.596899e-51 | -8.615850e-47 |
| Msa0457990 | Msa1214170 | 0.822369 | 2.458492e-53 | -8.615850e-47 |
| Msa0457990 | Msa1221330 | 0.810493 | 1.121631e-50 | -8.615850e-47 |
| Msa0457990 | Msa1229940 | 0.826214 | 3.067144e-54 | -8.615850e-47 |
| Msa0457990 | Msa1235390 | 0.804551 | 2.045811e-49 | -8.615850e-47 |
| Msa0457990 | Msa1236440 | 0.837742 | 4.343809e-57 | -8.615850e-47 |
| Msa0457990 | Msa1270730 | 0.810360 | 1.198349e-50 | -8.615850e-47 |
| Msa0457990 | Msa1277670 | 0.836463 | 9.219123e-57 | -8.615850e-47 |
| Msa0457990 | Msa1332050 | 0.801154 | 1.029404e-48 | -8.615850e-47 |
| Msa0457990 | Msa1335230 | 0.822436 | 2.371676e-53 | -8.615850e-47 |
| Msa0457990 | Msa1338400 | 0.802079 | 6.651155e-49 | -8.615850e-47 |
| Msa0457990 | Msa1349450 | 0.806430 | 8.257190e-50 | -8.615850e-47 |
| Msa0457990 | Msa1360020 | 0.826035 | 3.382747e-54 | -8.615850e-47 |
| Msa0457990 | Msa1369920 | -0.801783 | 7.650906e-49 | -8.615850e-47 |
| Msa0457990 | Msa1372150 | 0.808118 | 3.623677e-50 | -8.615850e-47 |
| Msa0457990 | Msa1378680 | 0.808755 | 2.650380e-50 | -8.615850e-47 |
| Msa0457990 | Msa1419840 | 0.814847 | 1.250381e-51 | -8.615850e-47 |
| Msa0457990 | Msa1423820 | 0.827671 | 1.375458e-54 | -8.615850e-47 |
| Msa0457990 | Msa1424630 | 0.824734 | 6.874515e-54 | -8.615850e-47 |
| Msa0457990 | Msa1430130 | 0.808336 | 3.255917e-50 | -8.615850e-47 |
| Msa0457990 | Msa1430550 | 0.837529 | 4.925878e-57 | -8.615850e-47 |
| Msa0457990 | Msa1442790 | 0.802211 | 6.247277e-49 | -8.615850e-47 |
| Msa0457990 | Msa1460750 | 0.807875 | 4.082402e-50 | -8.615850e-47 |
| Msa0457990 | Msa1462360 | 0.818401 | 1.998588e-52 | -8.615850e-47 |
| Msa0240270 | Msa0457990 | 0.832523 | 9.005061e-56 | -8.615850e-47 |
| Msa0243480 | Msa0457990 | 0.803212 | 3.881761e-49 | -8.615850e-47 |
| Msa0264310 | Msa0457990 | 0.968850 | 2.875829e-129 | -8.615850e-47 |
| Msa0269560 | Msa0457990 | 0.853696 | 2.014561e-61 | -8.615850e-47 |
| Msa0271550 | Msa0457990 | 0.802981 | 4.334767e-49 | -8.615850e-47 |
| Msa0284450 | Msa0457990 | 0.809581 | 1.762979e-50 | -8.615850e-47 |
| Msa0299660 | Msa0457990 | 0.808389 | 3.171812e-50 | -8.615850e-47 |
| Msa0302840 | Msa0457990 | 0.823870 | 1.097384e-53 | -8.615850e-47 |
| Msa0314070 | Msa0457990 | 0.806373 | 8.490230e-50 | -8.615850e-47 |
| Msa0321080 | Msa0457990 | 0.819319 | 1.236233e-52 | -8.615850e-47 |
| Msa0322680 | Msa0457990 | 0.804214 | 2.405318e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457990 | MtrunA17_Chr2g0328111 | 92.929 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1311 |
| Msa0457990 | MtrunA17_Chr1g0169831 | 40.361 | 166 | 98 | 1 | 525 | 689 | 708 | 873 | 9.53e-35 | 141 |
| Msa0457990 | MtrunA17_Chr4g0010021 | 34.637 | 179 | 97 | 4 | 510 | 688 | 390 | 548 | 1.15e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457990 | AT5G02390.1 | 32.112 | 464 | 249 | 17 | 247 | 679 | 396 | 824 | 1.34e-50 | 189 |
| Msa0457990 | AT5G02390.3 | 32.112 | 464 | 249 | 17 | 247 | 679 | 396 | 824 | 1.34e-50 | 189 |
| Msa0457990 | AT1G07620.2 | 26.554 | 708 | 366 | 27 | 1 | 687 | 1 | 575 | 3.33e-39 | 153 |
| Msa0457990 | AT1G07620.4 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.40e-37 | 146 |
| Msa0457990 | AT1G07620.3 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.40e-37 | 146 |
| Msa0457990 | AT1G07620.1 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.40e-37 | 146 |
| Msa0457990 | AT5G02390.2 | 28.723 | 376 | 203 | 16 | 247 | 592 | 396 | 736 | 6.84e-22 | 101 |
Find 110 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGACATATTTGAAAT+TGG | 0.199181 | 3_3:-53160885 | None:intergenic |
| ATGTTGATTAATTTGTAAAT+AGG | 0.210912 | 3_3:+53161489 | Msa0457990:three_prime_UTR |
| ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 3_3:-53159585 | None:intergenic |
| GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 3_3:+53159634 | Msa0457990:CDS |
| AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 3_3:-53160371 | None:intergenic |
| CAGAAATTGATTATTTGTTA+TGG | 0.249750 | 3_3:+53158685 | Msa0457990:exon |
| ACTATCTTGTTAAAGAAGTA+TGG | 0.258917 | 3_3:+53161182 | Msa0457990:CDS |
| TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 3_3:-53160521 | None:intergenic |
| TTCTTCTAAAGCTGTGAATA+AGG | 0.278916 | 3_3:-53160984 | None:intergenic |
| AGAAATTGATTATTTGTTAT+GGG | 0.298961 | 3_3:+53158686 | Msa0457990:exon |
| TAGTTGAATGCAAAGGGTTT+TGG | 0.302998 | 3_3:-53161133 | None:intergenic |
| AATTGAAATGTCTCTGTTAA+GGG | 0.304642 | 3_3:-53159415 | None:intergenic |
| TAGAGTTGCTTAAAGAGTTT+TGG | 0.309502 | 3_3:+53161533 | Msa0457990:three_prime_UTR |
| GGTCTACCGTGTATCGCATT+TGG | 0.311231 | 3_3:-53160946 | None:intergenic |
| TTAACAAGATAGTTCCCTTT+AGG | 0.319585 | 3_3:-53161172 | None:intergenic |
| CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 3_3:-53159646 | None:intergenic |
| TAATTGAAATGTCTCTGTTA+AGG | 0.329455 | 3_3:-53159416 | None:intergenic |
| TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 3_3:+53159737 | Msa0457990:CDS |
| TATTCTTGATTATCATCGTT+GGG | 0.343497 | 3_3:+53158787 | Msa0457990:CDS |
| AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 3_3:+53159750 | Msa0457990:CDS |
| GTCTACCGTGTATCGCATTT+GGG | 0.345633 | 3_3:-53160945 | None:intergenic |
| CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 3_3:-53159839 | None:intergenic |
| TCCTTTGTGGCTTACTCCTT+CGG | 0.354599 | 3_3:-53159826 | None:intergenic |
| TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 3_3:-53160057 | None:intergenic |
| AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 3_3:+53159555 | Msa0457990:CDS |
| AACTCAAACCAATGCCTAAA+GGG | 0.384062 | 3_3:+53161158 | Msa0457990:CDS |
| GTGAATAAGGAAGGTTTCAT+TGG | 0.396105 | 3_3:-53160971 | None:intergenic |
| ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 3_3:+53160257 | Msa0457990:CDS |
| AAATTCTCTTCTCATGATGT+TGG | 0.451920 | 3_3:+53161371 | Msa0457990:exon |
| AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 3_3:-53159747 | None:intergenic |
| ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 3_3:+53158798 | Msa0457990:CDS |
| AGATAGTTCCCTTTAGGCAT+TGG | 0.454693 | 3_3:-53161166 | None:intergenic |
| AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 3_3:+53159335 | Msa0457990:CDS |
| AATCTTTAAACATACCTTGA+GGG | 0.459378 | 3_3:-53159196 | None:intergenic |
| ATATTCTTGATTATCATCGT+TGG | 0.463067 | 3_3:+53158786 | Msa0457990:CDS |
| CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 3_3:+53159647 | Msa0457990:CDS |
| CAGACATTAGATGATGTTGT+TGG | 0.474147 | 3_3:+53161247 | Msa0457990:CDS |
| AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 3_3:-53160260 | None:intergenic |
| AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 3_3:-53159953 | None:intergenic |
| ATAAGGAAGGTTTCATTGGC+TGG | 0.476766 | 3_3:-53160967 | None:intergenic |
| GAGATGACGTTCTTCGCATT+AGG | 0.478388 | 3_3:-53160076 | None:intergenic |
| TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 3_3:+53160454 | Msa0457990:CDS |
| GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 3_3:-53159546 | None:intergenic |
| AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 3_3:+53159674 | Msa0457990:CDS |
| AGTTTGTAGTTGAATGCAAA+GGG | 0.481518 | 3_3:-53161139 | None:intergenic |
| AAACTCAAACCAATGCCTAA+AGG | 0.488700 | 3_3:+53161157 | Msa0457990:CDS |
| TGGTTGGATGAATCTTCAAC+AGG | 0.489385 | 3_3:+53161291 | Msa0457990:CDS |
| GAAGGCTTTGAAGAAATACT+TGG | 0.495286 | 3_3:-53159804 | None:intergenic |
| GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 3_3:+53159345 | Msa0457990:CDS |
| TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 3_3:+53159584 | Msa0457990:CDS |
| TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 3_3:-53160553 | None:intergenic |
| ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 3_3:+53159613 | Msa0457990:CDS |
| TCTAAAGCTGTGAATAAGGA+AGG | 0.504713 | 3_3:-53160980 | None:intergenic |
| ATTTGTAAATAGGATTGTAC+TGG | 0.509013 | 3_3:+53161499 | Msa0457990:three_prime_UTR |
| AACAAATGAAGAAAATAATA+CGG | 0.513989 | 3_3:+53160307 | Msa0457990:CDS |
| GATGGCAAGACAACAGATCA+AGG | 0.516248 | 3_3:+53159390 | Msa0457990:CDS |
| TTGTGGCTTACTCCTTCGGA+AGG | 0.519810 | 3_3:-53159822 | None:intergenic |
| AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 3_3:-53159632 | None:intergenic |
| CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 3_3:+53158743 | Msa0457990:CDS |
| GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 3_3:+53160413 | Msa0457990:CDS |
| GCACTTCATCAGAAGAAAGA+TGG | 0.526893 | 3_3:+53159372 | Msa0457990:CDS |
| AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 3_3:+53160530 | Msa0457990:CDS |
| AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 3_3:+53159829 | Msa0457990:CDS |
| GATGAATCTTCAACAGGAAG+AGG | 0.528776 | 3_3:+53161297 | Msa0457990:CDS |
| GAAATTGATTATCACTTGAG+TGG | 0.531719 | 3_3:+53158651 | Msa0457990:five_prime_UTR |
| ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 3_3:+53160201 | Msa0457990:CDS |
| TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 3_3:+53158799 | Msa0457990:CDS |
| AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 3_3:+53159330 | Msa0457990:CDS |
| AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 3_3:+53158753 | Msa0457990:CDS |
| CTATCTTGTTAAAGAAGTAT+GGG | 0.540514 | 3_3:+53161183 | Msa0457990:CDS |
| TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 3_3:-53159628 | None:intergenic |
| GAAGATAAAACATGCACTTG+TGG | 0.545595 | 3_3:+53159890 | Msa0457990:CDS |
| AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 3_3:+53158709 | Msa0457990:CDS |
| TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 3_3:-53160455 | None:intergenic |
| GTCATCTCTTAATGAATCGA+TGG | 0.551778 | 3_3:+53160091 | Msa0457990:CDS |
| TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 3_3:+53159501 | Msa0457990:CDS |
| TCTAATGTCTGATCTAACTC+TGG | 0.557841 | 3_3:-53161235 | None:intergenic |
| ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 3_3:+53158788 | Msa0457990:CDS |
| ATTTCTTCAAAGCCTTCCGA+AGG | 0.568843 | 3_3:+53159810 | Msa0457990:CDS |
| CTAAGAGATATAGACATTGG+TGG | 0.569025 | 3_3:+53159504 | Msa0457990:CDS |
| GCACGAGCAAAGAGATCAAG+TGG | 0.575717 | 3_3:+53160141 | Msa0457990:CDS |
| AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 3_3:+53158754 | Msa0457990:CDS |
| AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 3_3:+53160542 | Msa0457990:CDS |
| ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 3_3:+53159972 | Msa0457990:CDS |
| GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 3_3:+53159648 | Msa0457990:CDS |
| GAGTTTGTAGTTGAATGCAA+AGG | 0.582588 | 3_3:-53161140 | None:intergenic |
| GTGTGTAGCACTTGAACTTG+AGG | 0.590237 | 3_3:+53161321 | Msa0457990:CDS |
| ATTTGACGAAAAGAAGTGGT+TGG | 0.594040 | 3_3:+53161275 | Msa0457990:CDS |
| TGGTTATGCAGGACAAGGTG+TGG | 0.594929 | 3_3:+53158623 | None:intergenic |
| GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 3_3:+53160419 | Msa0457990:CDS |
| CATGACTACTAATCTTAGCA+AGG | 0.600526 | 3_3:+53160484 | Msa0457990:CDS |
| AAACAATGATGATGTTATGG+AGG | 0.602597 | 3_3:+53159446 | Msa0457990:CDS |
| CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 3_3:+53159346 | Msa0457990:CDS |
| AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 3_3:+53160414 | Msa0457990:CDS |
| TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 3_3:+53159767 | Msa0457990:CDS |
| AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 3_3:+53160013 | Msa0457990:CDS |
| TGTTATGGAGGTAATTAGTG+TGG | 0.644603 | 3_3:+53159458 | Msa0457990:CDS |
| TACAGATGCAGAATCCCTCA+AGG | 0.647198 | 3_3:+53159182 | Msa0457990:CDS |
| GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 3_3:+53158755 | Msa0457990:CDS |
| ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 3_3:-53160273 | None:intergenic |
| CGTGATTTGACGAAAAGAAG+TGG | 0.655367 | 3_3:+53161271 | Msa0457990:CDS |
| AATCATGGTTATGCAGGACA+AGG | 0.656311 | 3_3:+53158618 | None:intergenic |
| GCAGACCCAAATGCGATACA+CGG | 0.657845 | 3_3:+53160940 | Msa0457990:CDS |
| CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 3_3:+53159839 | Msa0457990:CDS |
| TCCGAAGGAGTAAGCCACAA+AGG | 0.663038 | 3_3:+53159825 | Msa0457990:CDS |
| AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 3_3:+53159649 | Msa0457990:CDS |
| AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 3_3:+53159650 | Msa0457990:CDS |
| AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 3_3:-53160230 | None:intergenic |
| AAATGAAGAAAATAATACGG+TGG | 0.680803 | 3_3:+53160310 | Msa0457990:CDS |
| GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 3_3:+53160487 | Msa0457990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGATAAAAATATATATA+AGG | + | chr3_3:53158970-53158989 | Msa0457990:intron | 10.0% |
| !! | CATGATAAAAATATATATAA+GGG | + | chr3_3:53158971-53158990 | Msa0457990:intron | 10.0% |
| !! | ATGATAAAAATATATATAAG+GGG | + | chr3_3:53158972-53158991 | Msa0457990:intron | 10.0% |
| !!! | AGAAATTGATTATTTGTTAT+GGG | + | chr3_3:53158686-53158705 | Msa0457990:exon | 15.0% |
| !!! | TTTTAATGATTATAAAGCAA+TGG | - | chr3_3:53158944-53158963 | None:intergenic | 15.0% |
| !!! | TTTAAATAATTCTAAGGTAT+AGG | - | chr3_3:53159068-53159087 | None:intergenic | 15.0% |
| !! | TTCTACTTTAAATAATTCTA+AGG | - | chr3_3:53159074-53159093 | None:intergenic | 15.0% |
| !!! | AGATTCATGATTATATTTTA+TGG | + | chr3_3:53159214-53159233 | Msa0457990:intron | 15.0% |
| !!! | AATTCTTTATTTATTTGTGA+CGG | - | chr3_3:53159243-53159262 | None:intergenic | 15.0% |
| !! | AACAAATGAAGAAAATAATA+CGG | + | chr3_3:53160307-53160326 | Msa0457990:CDS | 15.0% |
| !!! | ATCATTACTAATCTTTTTTT+TGG | + | chr3_3:53160739-53160758 | Msa0457990:intron | 15.0% |
| !!! | ATGTTGATTAATTTGTAAAT+AGG | + | chr3_3:53161489-53161508 | Msa0457990:three_prime_UTR | 15.0% |
| !!! | CAGAAATTGATTATTTGTTA+TGG | + | chr3_3:53158685-53158704 | Msa0457990:exon | 20.0% |
| !! | AGTGATTTATCAATCTTTAA+AGG | - | chr3_3:53160374-53160393 | None:intergenic | 20.0% |
| ! | CAAATTCAAGAAGTTAATCA+AGG | + | chr3_3:53158743-53158762 | Msa0457990:CDS | 25.0% |
| ! | ATATTCTTGATTATCATCGT+TGG | + | chr3_3:53158786-53158805 | Msa0457990:CDS | 25.0% |
| ! | TATTCTTGATTATCATCGTT+GGG | + | chr3_3:53158787-53158806 | Msa0457990:CDS | 25.0% |
| ! | ATAAAAGAAGAAACATAGTG+TGG | - | chr3_3:53158873-53158892 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTATCTGCATAT+AGG | - | chr3_3:53159134-53159153 | None:intergenic | 25.0% |
| ! | AATCTTTAAACATACCTTGA+GGG | - | chr3_3:53159199-53159218 | None:intergenic | 25.0% |
| ! | AGAGAAATATCAAATGCTAA+AGG | + | chr3_3:53159330-53159349 | Msa0457990:CDS | 25.0% |
| ! | AATTGAAATGTCTCTGTTAA+GGG | - | chr3_3:53159418-53159437 | None:intergenic | 25.0% |
| ! | TAATTGAAATGTCTCTGTTA+AGG | - | chr3_3:53159419-53159438 | None:intergenic | 25.0% |
| !! | CAAAAACAATGATGATGTTA+TGG | + | chr3_3:53159443-53159462 | Msa0457990:CDS | 25.0% |
| !! | TTTCTAAGAGATATAGACAT+TGG | + | chr3_3:53159501-53159520 | Msa0457990:CDS | 25.0% |
| !! | AAATTGCTTCTAGAAAACAT+AGG | - | chr3_3:53160233-53160252 | None:intergenic | 25.0% |
| ! | AAATGAAGAAAATAATACGG+TGG | + | chr3_3:53160310-53160329 | Msa0457990:CDS | 25.0% |
| !!! | ATCACTTGAACATTTTAAAG+AGG | + | chr3_3:53160388-53160407 | Msa0457990:CDS | 25.0% |
| !!! | TTTTTGGCTATATATATACC+AGG | + | chr3_3:53160755-53160774 | Msa0457990:intron | 25.0% |
| !! | GTCTTTGACATATTTGAAAT+TGG | - | chr3_3:53160888-53160907 | None:intergenic | 25.0% |
| !! | CAAAGACATTCTTGAATTTT+CGG | + | chr3_3:53160901-53160920 | Msa0457990:CDS | 25.0% |
| !! | AAAGACATTCTTGAATTTTC+GGG | + | chr3_3:53160902-53160921 | Msa0457990:CDS | 25.0% |
| ! | ACTATCTTGTTAAAGAAGTA+TGG | + | chr3_3:53161182-53161201 | Msa0457990:CDS | 25.0% |
| !! | CTATCTTGTTAAAGAAGTAT+GGG | + | chr3_3:53161183-53161202 | Msa0457990:CDS | 25.0% |
| ! | ATTTGTAAATAGGATTGTAC+TGG | + | chr3_3:53161499-53161518 | Msa0457990:three_prime_UTR | 25.0% |
| GAAATTGATTATCACTTGAG+TGG | + | chr3_3:53158651-53158670 | Msa0457990:five_prime_UTR | 30.0% | |
| ! | AAAACACTTGATTAGTTCAG+AGG | + | chr3_3:53158709-53158728 | Msa0457990:CDS | 30.0% |
| AAGTTAATCAAGGATGTATG+TGG | + | chr3_3:53158753-53158772 | Msa0457990:CDS | 30.0% | |
| AGTTAATCAAGGATGTATGT+GGG | + | chr3_3:53158754-53158773 | Msa0457990:CDS | 30.0% | |
| ATTCTTGATTATCATCGTTG+GGG | + | chr3_3:53158788-53158807 | Msa0457990:CDS | 30.0% | |
| CAGCTGTTTATATACACAAA+AGG | - | chr3_3:53159023-53159042 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGGTCTTGCAAAA+TGG | - | chr3_3:53159157-53159176 | None:intergenic | 30.0% |
| ! | CATCTGTAACAACATTTTGT+TGG | - | chr3_3:53159170-53159189 | None:intergenic | 30.0% |
| GAATCTTTAAACATACCTTG+AGG | - | chr3_3:53159200-53159219 | None:intergenic | 30.0% | |
| AATATCAAATGCTAAAGGTC+AGG | + | chr3_3:53159335-53159354 | Msa0457990:CDS | 30.0% | |
| ! | AAACAATGATGATGTTATGG+AGG | + | chr3_3:53159446-53159465 | Msa0457990:CDS | 30.0% |
| AAAGCGAAATTGACAAAATC+AGG | + | chr3_3:53159555-53159574 | Msa0457990:CDS | 30.0% | |
| !!! | AAACTTGATCCAAGCTTTTT+TGG | - | chr3_3:53159702-53159721 | None:intergenic | 30.0% |
| ATGATAAGATTCACAAGAGT+AGG | + | chr3_3:53160201-53160220 | Msa0457990:CDS | 30.0% | |
| ATCATGTAGAATGAATCCTA+AGG | - | chr3_3:53160276-53160295 | None:intergenic | 30.0% | |
| !! | AAGTTGATGAAACAGTTGAA+GGG | + | chr3_3:53160414-53160433 | Msa0457990:CDS | 30.0% |
| !! | TAAATTTGTTACCTTCTGCT+TGG | - | chr3_3:53160556-53160575 | None:intergenic | 30.0% |
| ACTAACGTAACATTTCTTTG+AGG | + | chr3_3:53160592-53160611 | Msa0457990:intron | 30.0% | |
| !! | TTCTTCTAAAGCTGTGAATA+AGG | - | chr3_3:53160987-53161006 | None:intergenic | 30.0% |
| !! | TCACCAACTTCTTTTTAACT+TGG | + | chr3_3:53161063-53161082 | Msa0457990:CDS | 30.0% |
| TGACCAAGTTAAAAAGAAGT+TGG | - | chr3_3:53161069-53161088 | None:intergenic | 30.0% | |
| !!! | AAGGGTTTTGGAAAATAAGT+TGG | - | chr3_3:53161124-53161143 | None:intergenic | 30.0% |
| AGTTTGTAGTTGAATGCAAA+GGG | - | chr3_3:53161142-53161161 | None:intergenic | 30.0% | |
| TTAACAAGATAGTTCCCTTT+AGG | - | chr3_3:53161175-53161194 | None:intergenic | 30.0% | |
| AAATTCTCTTCTCATGATGT+TGG | + | chr3_3:53161371-53161390 | Msa0457990:exon | 30.0% | |
| !!! | ATGATTTTTTGAAGCAGCAT+AGG | + | chr3_3:53161460-53161479 | Msa0457990:three_prime_UTR | 30.0% |
| GTTAATCAAGGATGTATGTG+GGG | + | chr3_3:53158755-53158774 | Msa0457990:CDS | 35.0% | |
| GGTATGAAATTGCTTACATC+TGG | - | chr3_3:53158852-53158871 | None:intergenic | 35.0% | |
| ACAAAAGGTTCTTGATGAGA+TGG | - | chr3_3:53159008-53159027 | None:intergenic | 35.0% | |
| TGTTATGGAGGTAATTAGTG+TGG | + | chr3_3:53159458-53159477 | Msa0457990:CDS | 35.0% | |
| CTAAGAGATATAGACATTGG+TGG | + | chr3_3:53159504-53159523 | Msa0457990:CDS | 35.0% | |
| ! | CTAATGTTTTTCACCTTGGA+AGG | - | chr3_3:53159600-53159619 | None:intergenic | 35.0% |
| ! | AGAGCTAATGTTTTTCACCT+TGG | - | chr3_3:53159604-53159623 | None:intergenic | 35.0% |
| ! | AAATTTCGGTTTGCTTAGAC+CGG | - | chr3_3:53159635-53159654 | None:intergenic | 35.0% |
| !! | GAAGGCTTTGAAGAAATACT+TGG | - | chr3_3:53159807-53159826 | None:intergenic | 35.0% |
| GAAGATAAAACATGCACTTG+TGG | + | chr3_3:53159890-53159909 | Msa0457990:CDS | 35.0% | |
| CTTGTGGAACTCAAAAAAAG+TGG | + | chr3_3:53159906-53159925 | Msa0457990:CDS | 35.0% | |
| AGATCTCTTTCTCGTTATTG+TGG | - | chr3_3:53159956-53159975 | None:intergenic | 35.0% | |
| ATCTCACAAAGCTTAGATGT+TGG | + | chr3_3:53159972-53159991 | Msa0457990:CDS | 35.0% | |
| GTCATCTCTTAATGAATCGA+TGG | + | chr3_3:53160091-53160110 | Msa0457990:CDS | 35.0% | |
| AATCCTAAGGACTCAAGATT+AGG | - | chr3_3:53160263-53160282 | None:intergenic | 35.0% | |
| !! | GAAGTTGATGAAACAGTTGA+AGG | + | chr3_3:53160413-53160432 | Msa0457990:CDS | 35.0% |
| CATGACTACTAATCTTAGCA+AGG | + | chr3_3:53160484-53160503 | Msa0457990:CDS | 35.0% | |
| TTGTCTTGACAGCTAATTTC+AGG | - | chr3_3:53160524-53160543 | None:intergenic | 35.0% | |
| AGCTGTCAAGACAATACAAT+CGG | + | chr3_3:53160530-53160549 | Msa0457990:CDS | 35.0% | |
| GGCTATATATATACCAGGAA+AGG | + | chr3_3:53160760-53160779 | Msa0457990:intron | 35.0% | |
| !!! | TCTTGAATTTTCGGGTTTCA+TGG | + | chr3_3:53160910-53160929 | Msa0457990:CDS | 35.0% |
| !!! | CTTGAATTTTCGGGTTTCAT+GGG | + | chr3_3:53160911-53160930 | Msa0457990:CDS | 35.0% |
| GTGAATAAGGAAGGTTTCAT+TGG | - | chr3_3:53160974-53160993 | None:intergenic | 35.0% | |
| ! | TCTAAAGCTGTGAATAAGGA+AGG | - | chr3_3:53160983-53161002 | None:intergenic | 35.0% |
| ! | TAGTTGAATGCAAAGGGTTT+TGG | - | chr3_3:53161136-53161155 | None:intergenic | 35.0% |
| GAGTTTGTAGTTGAATGCAA+AGG | - | chr3_3:53161143-53161162 | None:intergenic | 35.0% | |
| AAACTCAAACCAATGCCTAA+AGG | + | chr3_3:53161157-53161176 | Msa0457990:CDS | 35.0% | |
| AACTCAAACCAATGCCTAAA+GGG | + | chr3_3:53161158-53161177 | Msa0457990:CDS | 35.0% | |
| TCTAATGTCTGATCTAACTC+TGG | - | chr3_3:53161238-53161257 | None:intergenic | 35.0% | |
| CAGACATTAGATGATGTTGT+TGG | + | chr3_3:53161247-53161266 | Msa0457990:CDS | 35.0% | |
| ATTTGACGAAAAGAAGTGGT+TGG | + | chr3_3:53161275-53161294 | Msa0457990:CDS | 35.0% | |
| GCACTTCATCAGAAGAAAGA+TGG | + | chr3_3:53159372-53159391 | Msa0457990:CDS | 40.0% | |
| ! | GTCAATTTCGCTTTGTTGTG+AGG | - | chr3_3:53159549-53159568 | None:intergenic | 40.0% |
| !! | ACATTAGCTCTAGTACCTTC+CGG | + | chr3_3:53159613-53159632 | Msa0457990:CDS | 40.0% |
| GGTCTAAGCAAACCGAAATT+TGG | + | chr3_3:53159634-53159653 | Msa0457990:CDS | 40.0% | |
| !! | CTTGGGAAAGTGCCAAATTT+CGG | - | chr3_3:53159649-53159668 | None:intergenic | 40.0% |
| GAAATTTGGCACTTTCCCAA+GGG | + | chr3_3:53159648-53159667 | Msa0457990:CDS | 40.0% | |
| AAATTTGGCACTTTCCCAAG+GGG | + | chr3_3:53159649-53159668 | Msa0457990:CDS | 40.0% | |
| TTATGAAACGCCGAAGCTTT+CGG | + | chr3_3:53159737-53159756 | Msa0457990:CDS | 40.0% | |
| TCTTGGAATCGATAGTGTCA+TGG | + | chr3_3:53159767-53159786 | Msa0457990:CDS | 40.0% | |
| ATTTCTTCAAAGCCTTCCGA+AGG | + | chr3_3:53159810-53159829 | Msa0457990:CDS | 40.0% | |
| AAAGAGTAAGAGCTTGAGTG+AGG | + | chr3_3:53160013-53160032 | Msa0457990:CDS | 40.0% | |
| !! | TAGGCTAGCTTCATGTTTGT+TGG | - | chr3_3:53160060-53160079 | None:intergenic | 40.0% |
| ATGCCTAATCTTGAGTCCTT+AGG | + | chr3_3:53160257-53160276 | Msa0457990:CDS | 40.0% | |
| ! | TCCTAGTTCTTTATCTGCTG+TGG | + | chr3_3:53160454-53160473 | Msa0457990:CDS | 40.0% |
| TCCACAGCAGATAAAGAACT+AGG | - | chr3_3:53160458-53160477 | None:intergenic | 40.0% | |
| GACTACTAATCTTAGCAAGG+AGG | + | chr3_3:53160487-53160506 | Msa0457990:CDS | 40.0% | |
| ATAAGGAAGGTTTCATTGGC+TGG | - | chr3_3:53160970-53160989 | None:intergenic | 40.0% | |
| AGATAGTTCCCTTTAGGCAT+TGG | - | chr3_3:53161169-53161188 | None:intergenic | 40.0% | |
| CGTGATTTGACGAAAAGAAG+TGG | + | chr3_3:53161271-53161290 | Msa0457990:CDS | 40.0% | |
| TGGTTGGATGAATCTTCAAC+AGG | + | chr3_3:53161291-53161310 | Msa0457990:CDS | 40.0% | |
| GATGAATCTTCAACAGGAAG+AGG | + | chr3_3:53161297-53161316 | Msa0457990:CDS | 40.0% | |
| ! | ATCATCGTTGGGGTGTCAAA+AGG | + | chr3_3:53158798-53158817 | Msa0457990:CDS | 45.0% |
| ! | TCATCGTTGGGGTGTCAAAA+GGG | + | chr3_3:53158799-53158818 | Msa0457990:CDS | 45.0% |
| TACAGATGCAGAATCCCTCA+AGG | + | chr3_3:53159182-53159201 | Msa0457990:CDS | 45.0% | |
| CTAAAGGTCAGGCTAGTAGT+GGG | + | chr3_3:53159346-53159365 | Msa0457990:CDS | 45.0% | |
| GATGGCAAGACAACAGATCA+AGG | + | chr3_3:53159390-53159409 | Msa0457990:CDS | 45.0% | |
| CGAAATTTGGCACTTTCCCA+AGG | + | chr3_3:53159647-53159666 | Msa0457990:CDS | 45.0% | |
| AATTTGGCACTTTCCCAAGG+GGG | + | chr3_3:53159650-53159669 | Msa0457990:CDS | 45.0% | |
| AAAGTTGCTAGCTGGAACTC+AGG | + | chr3_3:53159674-53159693 | Msa0457990:CDS | 45.0% | |
| ACTCAGGCTCCAAAAAAGCT+TGG | + | chr3_3:53159690-53159709 | Msa0457990:CDS | 45.0% | |
| TCCTTTGTGGCTTACTCCTT+CGG | - | chr3_3:53159829-53159848 | None:intergenic | 45.0% | |
| AAGGAGTAAGCCACAAAGGA+TGG | + | chr3_3:53159829-53159848 | Msa0457990:CDS | 45.0% | |
| CCACTTGATTCCATCCTTTG+TGG | - | chr3_3:53159842-53159861 | None:intergenic | 45.0% | |
| CCACAAAGGATGGAATCAAG+TGG | + | chr3_3:53159839-53159858 | Msa0457990:CDS | 45.0% | |
| GAGATGACGTTCTTCGCATT+AGG | - | chr3_3:53160079-53160098 | None:intergenic | 45.0% | |
| GATGAAACAGTTGAAGGGAG+TGG | + | chr3_3:53160419-53160438 | Msa0457990:CDS | 45.0% | |
| AATACAATCGGCCAAGCAGA+AGG | + | chr3_3:53160542-53160561 | Msa0457990:CDS | 45.0% | |
| GTCTACCGTGTATCGCATTT+GGG | - | chr3_3:53160948-53160967 | None:intergenic | 45.0% | |
| GTGTGTAGCACTTGAACTTG+AGG | + | chr3_3:53161321-53161340 | Msa0457990:CDS | 45.0% | |
| !! | AATATATAAATATAAATATC+AGG | + | chr3_3:53159296-53159315 | Msa0457990:intron | 5.0% |
| GCTAAAGGTCAGGCTAGTAG+TGG | + | chr3_3:53159345-53159364 | Msa0457990:CDS | 50.0% | |
| ! | GTTTTTCACCTTGGAAGGCG+CGG | - | chr3_3:53159595-53159614 | None:intergenic | 50.0% |
| ! | TTCGGTTTGCTTAGACCGGA+AGG | - | chr3_3:53159631-53159650 | None:intergenic | 50.0% |
| ! | GCTAGCAACTTTTCCCCCTT+GGG | - | chr3_3:53159666-53159685 | None:intergenic | 50.0% |
| ! | AGCTAGCAACTTTTCCCCCT+TGG | - | chr3_3:53159667-53159686 | None:intergenic | 50.0% |
| AAGGGGGAAAAGTTGCTAGC+TGG | + | chr3_3:53159666-53159685 | Msa0457990:CDS | 50.0% | |
| TTGTGGCTTACTCCTTCGGA+AGG | - | chr3_3:53159825-53159844 | None:intergenic | 50.0% | |
| TCCGAAGGAGTAAGCCACAA+AGG | + | chr3_3:53159825-53159844 | Msa0457990:CDS | 50.0% | |
| GCACGAGCAAAGAGATCAAG+TGG | + | chr3_3:53160141-53160160 | Msa0457990:CDS | 50.0% | |
| CGCGTATTCGATTCCTTTCC+TGG | - | chr3_3:53160776-53160795 | None:intergenic | 50.0% | |
| GCAGACCCAAATGCGATACA+CGG | + | chr3_3:53160940-53160959 | Msa0457990:CDS | 50.0% | |
| GGTCTACCGTGTATCGCATT+TGG | - | chr3_3:53160949-53160968 | None:intergenic | 50.0% | |
| TCCTTTAACCGCGCCTTCCA+AGG | + | chr3_3:53159584-53159603 | Msa0457990:CDS | 55.0% | |
| ! | ACCTTGGAAGGCGCGGTTAA+AGG | - | chr3_3:53159588-53159607 | None:intergenic | 55.0% |
| AGATCGCTCGCCGAAAGCTT+CGG | - | chr3_3:53159750-53159769 | None:intergenic | 55.0% | |
| AAGCTTTCGGCGAGCGATCT+TGG | + | chr3_3:53159750-53159769 | Msa0457990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 53158633 | 53161552 | 53158633 | ID=Msa0457990;Name=Msa0457990 |
| chr3_3 | mRNA | 53158633 | 53161552 | 53158633 | ID=Msa0457990-mRNA-1;Parent=Msa0457990;Name=Msa0457990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=71|1|1|1|1|1|4|165|689 |
| chr3_3 | exon | 53158633 | 53158854 | 53158633 | ID=Msa0457990-mRNA-1:exon:10281;Parent=Msa0457990-mRNA-1 |
| chr3_3 | exon | 53159142 | 53159203 | 53159142 | ID=Msa0457990-mRNA-1:exon:10282;Parent=Msa0457990-mRNA-1 |
| chr3_3 | exon | 53159318 | 53160563 | 53159318 | ID=Msa0457990-mRNA-1:exon:10283;Parent=Msa0457990-mRNA-1 |
| chr3_3 | exon | 53160777 | 53161552 | 53160777 | ID=Msa0457990-mRNA-1:exon:10284;Parent=Msa0457990-mRNA-1 |
| chr3_3 | five_prime_UTR | 53158633 | 53158703 | 53158633 | ID=Msa0457990-mRNA-1:five_prime_utr;Parent=Msa0457990-mRNA-1 |
| chr3_3 | CDS | 53158704 | 53158854 | 53158704 | ID=Msa0457990-mRNA-1:cds;Parent=Msa0457990-mRNA-1 |
| chr3_3 | CDS | 53159142 | 53159203 | 53159142 | ID=Msa0457990-mRNA-1:cds;Parent=Msa0457990-mRNA-1 |
| chr3_3 | CDS | 53159318 | 53160563 | 53159318 | ID=Msa0457990-mRNA-1:cds;Parent=Msa0457990-mRNA-1 |
| chr3_3 | CDS | 53160777 | 53161387 | 53160777 | ID=Msa0457990-mRNA-1:cds;Parent=Msa0457990-mRNA-1 |
| chr3_3 | three_prime_UTR | 53161388 | 53161552 | 53161388 | ID=Msa0457990-mRNA-1:three_prime_utr;Parent=Msa0457990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
