Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564140 | XP_013446623.1 | 97.015 | 469 | 14 | 0 | 102 | 570 | 91 | 559 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564140 | A0A072U486 | 97.015 | 469 | 14 | 0 | 102 | 570 | 91 | 559 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001240 | Msa0564140 | 0.814163 | 1.771581e-51 | -8.615850e-47 |
| Msa0006110 | Msa0564140 | 0.800366 | 1.490702e-48 | -8.615850e-47 |
| Msa0020930 | Msa0564140 | 0.809438 | 1.892291e-50 | -8.615850e-47 |
| Msa0031340 | Msa0564140 | 0.808491 | 3.017821e-50 | -8.615850e-47 |
| Msa0034110 | Msa0564140 | 0.805682 | 1.186359e-49 | -8.615850e-47 |
| Msa0044260 | Msa0564140 | 0.815031 | 1.138411e-51 | -8.615850e-47 |
| Msa0068680 | Msa0564140 | 0.817524 | 3.154401e-52 | -8.615850e-47 |
| Msa0075360 | Msa0564140 | 0.819249 | 1.282451e-52 | -8.615850e-47 |
| Msa0095560 | Msa0564140 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0102200 | Msa0564140 | 0.808830 | 2.554542e-50 | -8.615850e-47 |
| Msa0114060 | Msa0564140 | 0.829966 | 3.829706e-55 | -8.615850e-47 |
| Msa0116080 | Msa0564140 | 0.804317 | 2.289373e-49 | -8.615850e-47 |
| Msa0125880 | Msa0564140 | 0.817439 | 3.295540e-52 | -8.615850e-47 |
| Msa0159930 | Msa0564140 | 0.813247 | 2.818705e-51 | -8.615850e-47 |
| Msa0170570 | Msa0564140 | 0.809630 | 1.720515e-50 | -8.615850e-47 |
| Msa0174110 | Msa0564140 | 0.802736 | 4.869145e-49 | -8.615850e-47 |
| Msa0183050 | Msa0564140 | 0.811172 | 7.995604e-51 | -8.615850e-47 |
| Msa0220580 | Msa0564140 | 0.825151 | 5.481068e-54 | -8.615850e-47 |
| Msa0411160 | Msa0564140 | 0.866699 | 2.355339e-65 | -8.615850e-47 |
| Msa0411190 | Msa0564140 | 0.860106 | 2.602917e-63 | -8.615850e-47 |
| Msa0436760 | Msa0564140 | 0.812282 | 4.586123e-51 | -8.615850e-47 |
| Msa0470540 | Msa0564140 | 0.815884 | 7.354878e-52 | -8.615850e-47 |
| Msa0470690 | Msa0564140 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0334360 | Msa0564140 | 0.803737 | 3.022714e-49 | -8.615850e-47 |
| Msa0484720 | Msa0564140 | 0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa0564130 | Msa0564140 | 0.818719 | 1.692776e-52 | -8.615850e-47 |
| Msa0564140 | Msa0566310 | 0.811991 | 5.307593e-51 | -8.615850e-47 |
| Msa0564140 | Msa0711450 | 0.805731 | 1.158516e-49 | -8.615850e-47 |
| Msa0564140 | Msa0740510 | 0.821771 | 3.382722e-53 | -8.615850e-47 |
| Msa0564140 | Msa0748430 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0564140 | Msa0756540 | 0.803984 | 2.684769e-49 | -8.615850e-47 |
| Msa0564140 | Msa0758260 | 0.806971 | 6.348844e-50 | -8.615850e-47 |
| Msa0564140 | Msa0779690 | 0.814114 | 1.816449e-51 | -8.615850e-47 |
| Msa0564140 | Msa0802010 | 0.847761 | 9.427058e-60 | -8.615850e-47 |
| Msa0564140 | Msa0820770 | 0.814393 | 1.576631e-51 | -8.615850e-47 |
| Msa0564140 | Msa0824960 | 0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa0564140 | Msa0837890 | 0.818092 | 2.348010e-52 | -8.615850e-47 |
| Msa0564140 | Msa0861090 | 0.811493 | 6.809802e-51 | -8.615850e-47 |
| Msa0564140 | Msa0933230 | 0.815123 | 1.086147e-51 | -8.615850e-47 |
| Msa0564140 | Msa0964310 | 0.807409 | 5.127169e-50 | -8.615850e-47 |
| Msa0564140 | Msa0971090 | 0.806309 | 8.755750e-50 | -8.615850e-47 |
| Msa0564140 | Msa0981590 | 0.808754 | 2.651296e-50 | -8.615850e-47 |
| Msa0564140 | Msa1058170 | 0.811448 | 6.966132e-51 | -8.615850e-47 |
| Msa0564140 | Msa1081980 | 0.807536 | 4.818098e-50 | -8.615850e-47 |
| Msa0564140 | Msa1082500 | 0.803460 | 3.448994e-49 | -8.615850e-47 |
| Msa0564140 | Msa1102790 | 0.817971 | 2.500517e-52 | -8.615850e-47 |
| Msa0564140 | Msa1125080 | 0.801483 | 8.814232e-49 | -8.615850e-47 |
| Msa0564140 | Msa1203050 | 0.829221 | 5.810105e-55 | -8.615850e-47 |
| Msa0564140 | Msa1228590 | 0.813875 | 2.051467e-51 | -8.615850e-47 |
| Msa0564140 | Msa1255330 | 0.824797 | 6.643733e-54 | -8.615850e-47 |
| Msa0564140 | Msa1295950 | 0.820291 | 7.414184e-53 | -8.615850e-47 |
| Msa0564140 | Msa1331320 | 0.801526 | 8.637897e-49 | -8.615850e-47 |
| Msa0564140 | Msa1335540 | 0.812658 | 3.794467e-51 | -8.615850e-47 |
| Msa0564140 | Msa1353980 | 0.808539 | 2.947661e-50 | -8.615850e-47 |
| Msa0564140 | Msa1374470 | 0.812945 | 3.283012e-51 | -8.615850e-47 |
| Msa0564140 | Msa1404300 | 0.814817 | 1.269948e-51 | -8.615850e-47 |
| Msa0564140 | Msa1411020 | 0.820734 | 5.865483e-53 | -8.615850e-47 |
| Msa0564140 | Msa1423390 | 0.801408 | 9.134128e-49 | -8.615850e-47 |
| Msa0564140 | Msa1424290 | 0.817411 | 3.343231e-52 | -8.615850e-47 |
| Msa0564140 | Msa1425100 | 0.800917 | 1.151099e-48 | -8.615850e-47 |
| Msa0564140 | Msa1434350 | 0.822214 | 2.670408e-53 | -8.615850e-47 |
| Msa0564140 | Msa1439320 | 0.818369 | 2.032322e-52 | -8.615850e-47 |
| Msa0564140 | Msa1460050 | 0.816434 | 5.540972e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564140 | MtrunA17_Chr8g0378121 | 97.015 | 469 | 14 | 0 | 102 | 570 | 91 | 559 | 0.0 | 806 |
| Msa0564140 | MtrunA17_Chr3g0121611 | 60.476 | 210 | 69 | 4 | 362 | 570 | 525 | 721 | 2.28e-70 | 240 |
| Msa0564140 | MtrunA17_Chr3g0121611 | 46.108 | 334 | 154 | 8 | 105 | 413 | 90 | 422 | 1.16e-56 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564140 | AT5G48610.3 | 30.024 | 423 | 234 | 11 | 163 | 570 | 109 | 484 | 7.49e-27 | 114 |
| Msa0564140 | AT5G48610.5 | 30.024 | 423 | 234 | 11 | 163 | 570 | 109 | 484 | 7.49e-27 | 114 |
| Msa0564140 | AT5G43490.1 | 38.182 | 165 | 94 | 3 | 411 | 570 | 24 | 185 | 2.58e-17 | 80.9 |
Find 160 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGTCTCCTTCCGTTTCT+TGG | 0.133862 | 4_1:-64690447 | None:intergenic |
| CTCGAACTCCAGAAGGAATT+TGG | 0.141038 | 4_1:-64689757 | None:intergenic |
| AAGCATTTGGAATGGAAATT+TGG | 0.177507 | 4_1:-64690814 | None:intergenic |
| CGAGGGAACTGTTAAGTTTA+TGG | 0.211053 | 4_1:+64689857 | Msa0564140:CDS |
| TTGGGTATTCCATCAGCTTT+TGG | 0.215880 | 4_1:-64690026 | None:intergenic |
| GCTGATGGCAAAGGACTTTC+TGG | 0.225136 | 4_1:+64689579 | Msa0564140:CDS |
| TCCCACCCTCTCACGGAAAA+TGG | 0.227579 | 4_1:+64690773 | Msa0564140:CDS |
| GCCTAAGGAAAAGGATAAAA+AGG | 0.255553 | 4_1:+64689464 | Msa0564140:CDS |
| TATCAGGCTTGATTTCCTTC+TGG | 0.264456 | 4_1:-64689632 | None:intergenic |
| GCACTGCTGGTGGCTATTCC+TGG | 0.275184 | 4_1:-64690845 | None:intergenic |
| CTGGGGAAACACCGCAAGTA+TGG | 0.279696 | 4_1:+64691131 | Msa0564140:CDS |
| AAATCAGACCATTCCACTTT+AGG | 0.287385 | 4_1:-64691037 | None:intergenic |
| AACAAGGAATGCAAGATAAA+TGG | 0.298473 | 4_1:+64690878 | Msa0564140:CDS |
| ACAAAGAGACCCTTCTTATC+AGG | 0.303070 | 4_1:-64689648 | None:intergenic |
| GTACCACCATCTGGTGGTTT+TGG | 0.329982 | 4_1:-64687983 | None:intergenic |
| TTTGAAGATGCTTCAATTAA+CGG | 0.332894 | 4_1:-64690968 | None:intergenic |
| TCTTCGGACCGATGATTTGC+AGG | 0.334959 | 4_1:+64689356 | Msa0564140:CDS |
| ACAAAGAGAAGAAGGAAAAG+AGG | 0.337262 | 4_1:+64689418 | Msa0564140:CDS |
| AAAATTATCAAACAGTATAA+TGG | 0.344776 | 4_1:+64689678 | Msa0564140:CDS |
| CAAGGATCCCAAATTCCTTC+TGG | 0.349488 | 4_1:+64689749 | Msa0564140:CDS |
| CCCTCGTCCATCCTATGGTT+TGG | 0.350417 | 4_1:-64689840 | None:intergenic |
| CACGGAAAATGGAAGGATAT+TGG | 0.351389 | 4_1:+64690784 | Msa0564140:CDS |
| AGGAGAATTAAGGATGATAA+TGG | 0.354543 | 4_1:+64689780 | Msa0564140:CDS |
| TCAGTCTCCTTCCGTTTCTT+GGG | 0.357478 | 4_1:-64690446 | None:intergenic |
| AAATACTTCCCCATAGGTTT+GGG | 0.366582 | 4_1:-64690044 | None:intergenic |
| TTCTTACAGCCAATGAGAAT+TGG | 0.369962 | 4_1:+64690723 | Msa0564140:intron |
| GAAATACTTCCCCATAGGTT+TGG | 0.377644 | 4_1:-64690045 | None:intergenic |
| CGGCTTAGGTACTTGGTATC+TGG | 0.378474 | 4_1:-64691001 | None:intergenic |
| TTGGATGCTAAGAAAATTGA+TGG | 0.379631 | 4_1:+64689933 | Msa0564140:CDS |
| CCTGGCCTATCTGAAGCATT+TGG | 0.386031 | 4_1:-64690827 | None:intergenic |
| AATCAAATAACCAATCAGTA+TGG | 0.389922 | 4_1:-64691208 | None:intergenic |
| TAAAGTGGAATGGTCTGATT+TGG | 0.395164 | 4_1:+64691039 | Msa0564140:CDS |
| TCGAACTCCAGAAGGAATTT+GGG | 0.395578 | 4_1:-64689756 | None:intergenic |
| ATTTGTTCTTACTATCTCTT+CGG | 0.398130 | 4_1:+64689340 | Msa0564140:CDS |
| TCCTTTGCCATCAGCAGTAC+TGG | 0.405460 | 4_1:-64689571 | None:intergenic |
| GGAGTTCGAGAGGAGAATTA+AGG | 0.412047 | 4_1:+64689770 | Msa0564140:CDS |
| ATATATGCGGCTTAGGTACT+TGG | 0.412938 | 4_1:-64691008 | None:intergenic |
| AACAGTATAATGGAAACAAT+GGG | 0.418672 | 4_1:+64689688 | Msa0564140:CDS |
| CTTACTCGGCCAATTCTCAT+TGG | 0.418828 | 4_1:-64690732 | None:intergenic |
| TAAGAAGGACAAAGAGAAGA+AGG | 0.423230 | 4_1:+64689410 | Msa0564140:CDS |
| CTTGCTGAGGTACGACCTCT+TGG | 0.424367 | 4_1:+64689966 | Msa0564140:CDS |
| CCATTCCAAATGCTTCAGAT+AGG | 0.429248 | 4_1:+64690822 | Msa0564140:CDS |
| GTACCTAAGCCGCATATATT+CGG | 0.432368 | 4_1:+64691012 | Msa0564140:CDS |
| CATATATTCGGTACCTAAAG+TGG | 0.432721 | 4_1:+64691024 | Msa0564140:CDS |
| CAAAGAGAAGAAGGAAAAGA+GGG | 0.436383 | 4_1:+64689419 | Msa0564140:CDS |
| GGAAATCAAGCCTGATAAGA+AGG | 0.442190 | 4_1:+64689638 | Msa0564140:CDS |
| CAGTTCCCTCGTCCATCCTA+TGG | 0.452442 | 4_1:-64689845 | None:intergenic |
| GCTTCAATTAACGGAACAAC+TGG | 0.453814 | 4_1:-64690959 | None:intergenic |
| AAAGAGGGAGAAAGAAGGAC+GGG | 0.457375 | 4_1:+64689434 | Msa0564140:CDS |
| TGGAAGGGCTGGTAATCAAT+TGG | 0.457433 | 4_1:+64689800 | Msa0564140:CDS |
| AAAACTCAGGGATAAGGGTT+TGG | 0.464839 | 4_1:+64689914 | Msa0564140:CDS |
| TGATGGAATACCCAAACCTA+TGG | 0.467882 | 4_1:+64690034 | Msa0564140:CDS |
| GTGGTGAAATCTTCAGAGGC+TGG | 0.470353 | 4_1:+64691112 | Msa0564140:CDS |
| AAGGAAAAGAGGGAGAAAGA+AGG | 0.470708 | 4_1:+64689429 | Msa0564140:CDS |
| GTACCGAATATATGCGGCTT+AGG | 0.471466 | 4_1:-64691015 | None:intergenic |
| GGAAAAGAAAGAGGAAGGAA+AGG | 0.471618 | 4_1:+64690178 | Msa0564140:CDS |
| GAAAGACGAAGGAAAAGAAA+AGG | 0.471898 | 4_1:+64690118 | Msa0564140:CDS |
| AACAACTGGCACAGTTGCAG+TGG | 0.473289 | 4_1:-64690945 | None:intergenic |
| GTGAAGGAATTTGAATGTAT+AGG | 0.475515 | 4_1:-64690377 | None:intergenic |
| GTTAAGGAAAAGAAAGAGGA+AGG | 0.478443 | 4_1:+64690173 | Msa0564140:CDS |
| AAAAGAGGGAGAAAGAAGGA+CGG | 0.482676 | 4_1:+64689433 | Msa0564140:CDS |
| GGCTAGAGAGAACAATCATC+TGG | 0.487247 | 4_1:+64689716 | Msa0564140:CDS |
| GAAGTATTTCGACAAGAACT+TGG | 0.487563 | 4_1:+64690058 | Msa0564140:CDS |
| GACACGGGAAGGACAAAGAC+AGG | 0.491672 | 4_1:+64690267 | Msa0564140:CDS |
| CAACGCCAACAGAATTCTCA+TGG | 0.492996 | 4_1:-64690418 | None:intergenic |
| AAGGATGATAATGGAAGGGC+TGG | 0.493913 | 4_1:+64689789 | Msa0564140:CDS |
| GCCTCTGAAGATTTCACCAC+GGG | 0.498285 | 4_1:-64691109 | None:intergenic |
| AAAAGTTAAGGAAAAGAAAG+AGG | 0.499160 | 4_1:+64690169 | Msa0564140:CDS |
| AATCAGTATGGAATGACATA+TGG | 0.502166 | 4_1:-64691196 | None:intergenic |
| GCAGTGGGAGTCTTATTTGA+GGG | 0.504627 | 4_1:-64690929 | None:intergenic |
| GGGTGGGAAGAGGATGGTCT+TGG | 0.507218 | 4_1:-64690758 | None:intergenic |
| AGGTACTTGGTATCTGGATG+AGG | 0.509239 | 4_1:-64690995 | None:intergenic |
| CGGAAGGAGACTGAGTCAAA+TGG | 0.511323 | 4_1:+64690455 | Msa0564140:CDS |
| GATGGTCTTGGCAACTTACT+CGG | 0.513355 | 4_1:-64690746 | None:intergenic |
| TGCAGTGGGAGTCTTATTTG+AGG | 0.516352 | 4_1:-64690930 | None:intergenic |
| TGGTGAAATCTTCAGAGGCT+GGG | 0.517499 | 4_1:+64691113 | Msa0564140:CDS |
| AAGTTTATGGCTAGGAGTAG+TGG | 0.517647 | 4_1:+64689870 | Msa0564140:CDS |
| TAATGGAAACAATGGGGAGA+TGG | 0.525019 | 4_1:+64689695 | Msa0564140:CDS |
| TTGTCGAAATACTTCCCCAT+AGG | 0.525080 | 4_1:-64690050 | None:intergenic |
| AAACAGTATAATGGAAACAA+TGG | 0.525718 | 4_1:+64689687 | Msa0564140:CDS |
| ATCGTGCAAGTACCACCATC+TGG | 0.527287 | 4_1:-64687992 | None:intergenic |
| TTCCGTGAGAGGGTGGGAAG+AGG | 0.534417 | 4_1:-64690768 | None:intergenic |
| AACTTGGAAGCAACCATTGG+AGG | 0.535799 | 4_1:+64690074 | Msa0564140:CDS |
| CTGATTTGGATGGTCAAGAA+TGG | 0.536489 | 4_1:+64691053 | Msa0564140:CDS |
| TTCTATCTTAGCACTGCTGG+TGG | 0.536680 | 4_1:-64690855 | None:intergenic |
| CAAGCCGAGGGTCTCACTGC+AGG | 0.537339 | 4_1:+64689603 | Msa0564140:CDS |
| ATCCTCTTCCCACCCTCTCA+CGG | 0.538859 | 4_1:+64690766 | Msa0564140:CDS |
| GCTAAGAAAATTGATGGGAA+AGG | 0.545523 | 4_1:+64689939 | Msa0564140:CDS |
| AGTATGGAATGACATATGGC+AGG | 0.548436 | 4_1:-64691192 | None:intergenic |
| GGAGAAGAAAGGACACGGGA+AGG | 0.548439 | 4_1:+64690256 | Msa0564140:CDS |
| TACTTGGTATCTGGATGAGG+TGG | 0.549403 | 4_1:-64690992 | None:intergenic |
| CAGTGCTAAGATAGAAAACA+AGG | 0.550117 | 4_1:+64690862 | Msa0564140:CDS |
| AACCATTGGAGGGAAAGAAA+AGG | 0.550883 | 4_1:+64690085 | Msa0564140:CDS |
| GATGGAATACCCAAACCTAT+GGG | 0.553116 | 4_1:+64690035 | Msa0564140:CDS |
| TGGGGAAACACCGCAAGTAT+GGG | 0.553197 | 4_1:+64691132 | Msa0564140:CDS |
| AAGAACTTGGAAGCAACCAT+TGG | 0.553399 | 4_1:+64690071 | Msa0564140:CDS |
| ACTACAGTTCAGAACCATGC+TGG | 0.554427 | 4_1:+64689993 | Msa0564140:CDS |
| GCGTTGAAAATCCCAAGAAA+CGG | 0.556814 | 4_1:+64690435 | Msa0564140:CDS |
| AACGGCCATGAGAATTCTGT+TGG | 0.556917 | 4_1:+64690413 | Msa0564140:CDS |
| GAACTGTTAAGTTTATGGCT+AGG | 0.557585 | 4_1:+64689862 | Msa0564140:CDS |
| TTCTCCTCTCGAACTCCAGA+AGG | 0.559817 | 4_1:-64689764 | None:intergenic |
| CCAAATGCTTCAGATAGGCC+AGG | 0.565202 | 4_1:+64690827 | Msa0564140:CDS |
| TCATCTGGCTGAGGAGAACA+AGG | 0.565545 | 4_1:+64689731 | Msa0564140:CDS |
| TTGGATGAAAATTTCCAGCA+TGG | 0.566997 | 4_1:-64690007 | None:intergenic |
| AGGACTTTCTGGACAAGCCG+AGG | 0.567312 | 4_1:+64689590 | Msa0564140:CDS |
| CCTATCTGAAGCATTTGGAA+TGG | 0.571920 | 4_1:-64690822 | None:intergenic |
| CACTGCAGGTAAACTCCAGA+AGG | 0.572456 | 4_1:+64689617 | Msa0564140:CDS |
| TACATTCAAATTCCTTCACA+CGG | 0.574222 | 4_1:+64690381 | Msa0564140:CDS |
| TTATTTGAGGGTACTGCAAG+TGG | 0.575944 | 4_1:-64690917 | None:intergenic |
| TTAAAAGAAAGCAACATTGG+TGG | 0.576801 | 4_1:+64690353 | Msa0564140:CDS |
| GGCAGCTTGATCAGTGTTAG+CGG | 0.578726 | 4_1:-64687953 | None:intergenic |
| GAAAGACAGAGACAAGGACA+AGG | 0.582127 | 4_1:+64689506 | Msa0564140:CDS |
| AGAGAACAATCATCTGGCTG+AGG | 0.583452 | 4_1:+64689722 | Msa0564140:CDS |
| GGTGAAATCTTCAGAGGCTG+GGG | 0.583565 | 4_1:+64691114 | Msa0564140:CDS |
| ACTTGGAAGCAACCATTGGA+GGG | 0.583579 | 4_1:+64690075 | Msa0564140:CDS |
| AGTAAAACCAGTACTGCTGA+TGG | 0.586455 | 4_1:+64689564 | Msa0564140:CDS |
| GTTGATGAAAAGAAAGACGA+AGG | 0.588209 | 4_1:+64690107 | Msa0564140:CDS |
| AAATTAAAAGAAAGCAACAT+TGG | 0.590267 | 4_1:+64690350 | Msa0564140:CDS |
| GGACTTTCTGGACAAGCCGA+GGG | 0.592458 | 4_1:+64689591 | Msa0564140:CDS |
| AGTAGTGGAACCTTGCATGA+TGG | 0.592739 | 4_1:+64689885 | Msa0564140:CDS |
| GAATTAAGGATGATAATGGA+AGG | 0.597808 | 4_1:+64689784 | Msa0564140:CDS |
| AAAGAGGAGAAGAAAGGACA+CGG | 0.599142 | 4_1:+64690251 | Msa0564140:CDS |
| ACCAGTACTGCTGATGGCAA+AGG | 0.601620 | 4_1:+64689570 | Msa0564140:CDS |
| TGGATGCTAAGAAAATTGAT+GGG | 0.601666 | 4_1:+64689934 | Msa0564140:CDS |
| TTCACACGGATTAGCAAGAA+CGG | 0.605133 | 4_1:+64690395 | Msa0564140:CDS |
| ATTCGGTACCTAAAGTGGAA+TGG | 0.605226 | 4_1:+64691029 | Msa0564140:CDS |
| ACCCTCTCACGGAAAATGGA+AGG | 0.607090 | 4_1:+64690777 | Msa0564140:CDS |
| TGCAAATCCAAACCATAGGA+TGG | 0.607721 | 4_1:+64689833 | Msa0564140:CDS |
| GTGAGAGGGTGGGAAGAGGA+TGG | 0.611181 | 4_1:-64690764 | None:intergenic |
| AGTTTGCAAATCCAAACCAT+AGG | 0.613330 | 4_1:+64689829 | Msa0564140:CDS |
| TCCAAACCATAGGATGGACG+AGG | 0.613636 | 4_1:+64689839 | Msa0564140:CDS |
| GAAATCAAGCCTGATAAGAA+GGG | 0.614173 | 4_1:+64689639 | Msa0564140:CDS |
| TTTACCTGCAGTGAGACCCT+CGG | 0.616286 | 4_1:-64689607 | None:intergenic |
| AAGAGGAGAAGAAAGGACAC+GGG | 0.622809 | 4_1:+64690252 | Msa0564140:CDS |
| CTTGATCAGTGTTAGCGGTG+CGG | 0.624221 | 4_1:-64687948 | None:intergenic |
| GTATGGAATGACATATGGCA+GGG | 0.627043 | 4_1:-64691191 | None:intergenic |
| GTTCTTGCTAATCCGTGTGA+AGG | 0.628227 | 4_1:-64690393 | None:intergenic |
| AAGGACAAGGACAAAGACAA+AGG | 0.630449 | 4_1:+64689519 | Msa0564140:CDS |
| AATTCCTTCTGGAGTTCGAG+AGG | 0.632804 | 4_1:+64689760 | Msa0564140:CDS |
| AATTAAGGATGATAATGGAA+GGG | 0.640939 | 4_1:+64689785 | Msa0564140:CDS |
| TGAAAATCCCAAGAAACGGA+AGG | 0.641331 | 4_1:+64690439 | Msa0564140:CDS |
| ACCCGTGGTGAAATCTTCAG+AGG | 0.644415 | 4_1:+64691108 | Msa0564140:CDS |
| ACAACTGGCACAGTTGCAGT+GGG | 0.649267 | 4_1:-64690944 | None:intergenic |
| AGAGAAGAAAGATAAGACGA+AGG | 0.653032 | 4_1:+64690295 | Msa0564140:CDS |
| TTCACAAGAAAGAGAACCCG+TGG | 0.659067 | 4_1:+64691093 | Msa0564140:CDS |
| GTGGAATGGTCTGATTTGGA+TGG | 0.668446 | 4_1:+64691043 | Msa0564140:CDS |
| CTTTAGGTACCGAATATATG+CGG | 0.669167 | 4_1:-64691021 | None:intergenic |
| TGAACTGTAGTATTTCCAAG+AGG | 0.677524 | 4_1:-64689981 | None:intergenic |
| CCTTCACCAAAACCACCAGA+TGG | 0.678217 | 4_1:+64687977 | Msa0564140:CDS |
| AGCCTCTGAAGATTTCACCA+CGG | 0.682135 | 4_1:-64691110 | None:intergenic |
| TCACCAAAACCACCAGATGG+TGG | 0.682644 | 4_1:+64687980 | Msa0564140:CDS |
| ATGGAATACCCAAACCTATG+GGG | 0.696195 | 4_1:+64690036 | Msa0564140:CDS |
| GCATACTGAACTCAAAACCA+CGG | 0.698050 | 4_1:+64690319 | Msa0564140:CDS |
| AGTGGAACCTTGCATGATGG+CGG | 0.700303 | 4_1:+64689888 | Msa0564140:CDS |
| CCAAACCATAGGATGGACGA+GGG | 0.704128 | 4_1:+64689840 | Msa0564140:CDS |
| GTGCAAGTACCACCATCTGG+TGG | 0.711350 | 4_1:-64687989 | None:intergenic |
| ACACGGGAAGGACAAAGACA+GGG | 0.714929 | 4_1:+64690268 | Msa0564140:CDS |
| ACAGTATAATGGAAACAATG+GGG | 0.726804 | 4_1:+64689689 | Msa0564140:CDS |
| GAGTCAAATGGAGTTCTACG+TGG | 0.730691 | 4_1:+64690467 | Msa0564140:CDS |
| TGGGAAAGGAATGCTTGCTG+AGG | 0.751387 | 4_1:+64689953 | Msa0564140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGTTTGTTTATTTTAA+GGG | - | chr4_1:64688773-64688792 | None:intergenic | 10.0% |
| !!! | TTTTATGTTTGTTTATTTTA+AGG | - | chr4_1:64688774-64688793 | None:intergenic | 10.0% |
| !! | TTTATATGTTGTTCAAATAT+AGG | + | chr4_1:64688410-64688429 | Msa0564140:intron | 15.0% |
| !! | TATAAATATTATATCCACTA+GGG | - | chr4_1:64688633-64688652 | None:intergenic | 15.0% |
| !! | ATATAAATATTATATCCACT+AGG | - | chr4_1:64688634-64688653 | None:intergenic | 15.0% |
| !!! | TAGTGGATATAATATTTATA+TGG | + | chr4_1:64688633-64688652 | Msa0564140:intron | 15.0% |
| !! | AGTGGATATAATATTTATAT+GGG | + | chr4_1:64688634-64688653 | Msa0564140:intron | 15.0% |
| !! | ATAAACAAACATAAAAATGT+CGG | + | chr4_1:64688778-64688797 | Msa0564140:intron | 15.0% |
| !!! | TATTGTTGAAGTTTTTATTT+TGG | + | chr4_1:64689033-64689052 | Msa0564140:intron | 15.0% |
| !! | GAGAATAATACAAAAAAAAA+AGG | - | chr4_1:64689256-64689275 | None:intergenic | 15.0% |
| !! | AAAATTATCAAACAGTATAA+TGG | + | chr4_1:64689678-64689697 | Msa0564140:CDS | 15.0% |
| !! | AGAAAAAAGAAAAAATAAAG+AGG | + | chr4_1:64690235-64690254 | Msa0564140:CDS | 15.0% |
| !!! | TTATGTTGATATTTCATTTT+TGG | + | chr4_1:64690624-64690643 | Msa0564140:intron | 15.0% |
| !! | AAAATTAATTATAACATGTC+AGG | - | chr4_1:64690697-64690716 | None:intergenic | 15.0% |
| !!! | GTTTACTATTGTTGTTTTTT+CGG | - | chr4_1:64688191-64688210 | None:intergenic | 20.0% |
| !! | ATAAAAGAAATATCAAGCTT+TGG | - | chr4_1:64688281-64688300 | None:intergenic | 20.0% |
| !! | ATAAATATTATATCCACTAG+GGG | - | chr4_1:64688632-64688651 | None:intergenic | 20.0% |
| !!! | TTATTTTAAGGGTTAACAAA+GGG | - | chr4_1:64688762-64688781 | None:intergenic | 20.0% |
| !!! | TTTATTTTAAGGGTTAACAA+AGG | - | chr4_1:64688763-64688782 | None:intergenic | 20.0% |
| !!! | TTCAAGTTTGTTTATTGTAA+GGG | - | chr4_1:64688903-64688922 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTTGTTTATTGTA+AGG | - | chr4_1:64688904-64688923 | None:intergenic | 20.0% |
| !!! | TAAAGTCTAGAATATTTTGT+AGG | + | chr4_1:64689123-64689142 | Msa0564140:intron | 20.0% |
| !!! | ATTTTTGGAATTTCTAACTT+AGG | + | chr4_1:64689183-64689202 | Msa0564140:intron | 20.0% |
| !! | AAAACACAAAAAAGATAAGA+AGG | + | chr4_1:64689395-64689414 | Msa0564140:CDS | 20.0% |
| !! | AAAAATAAAGATGATAAACG+AGG | + | chr4_1:64690212-64690231 | Msa0564140:CDS | 20.0% |
| !! | AAATTAAAAGAAAGCAACAT+TGG | + | chr4_1:64690350-64690369 | Msa0564140:CDS | 20.0% |
| !!! | ATTGTTGTTTTTTCGGTTTT+AGG | - | chr4_1:64688184-64688203 | None:intergenic | 25.0% |
| ! | GTTTGTTTAACATTCTGTTT+CGG | + | chr4_1:64688340-64688359 | Msa0564140:intron | 25.0% |
| !! | TGACATTTCTCATTTTATCA+AGG | - | chr4_1:64688527-64688546 | None:intergenic | 25.0% |
| ! | AAATAGATGATTGAAGAGAA+GGG | + | chr4_1:64688575-64688594 | Msa0564140:intron | 25.0% |
| ! | CAAAATATTCTAGACTTTAG+TGG | - | chr4_1:64689122-64689141 | None:intergenic | 25.0% |
| !!! | GATTTGTTGTTCGTTATTTT+TGG | + | chr4_1:64689168-64689187 | Msa0564140:intron | 25.0% |
| ! | ATTTGTTCTTACTATCTCTT+CGG | + | chr4_1:64689340-64689359 | Msa0564140:CDS | 25.0% |
| ! | AGGATAAAAAGGAAAAAAAC+AGG | + | chr4_1:64689475-64689494 | Msa0564140:CDS | 25.0% |
| ! | GGATAAAAAGGAAAAAAACA+GGG | + | chr4_1:64689476-64689495 | Msa0564140:CDS | 25.0% |
| !! | AAACAGTATAATGGAAACAA+TGG | + | chr4_1:64689687-64689706 | Msa0564140:CDS | 25.0% |
| !! | AACAGTATAATGGAAACAAT+GGG | + | chr4_1:64689688-64689707 | Msa0564140:CDS | 25.0% |
| !!! | AATTAAGGATGATAATGGAA+GGG | + | chr4_1:64689785-64689804 | Msa0564140:CDS | 25.0% |
| ! | AAAAGTTAAGGAAAAGAAAG+AGG | + | chr4_1:64690169-64690188 | Msa0564140:CDS | 25.0% |
| ! | AAAAATAAAGAGGAGAAGAA+AGG | + | chr4_1:64690245-64690264 | Msa0564140:CDS | 25.0% |
| ! | AAATAAGATGTTTCTCTTGT+TGG | + | chr4_1:64690533-64690552 | Msa0564140:intron | 25.0% |
| ! | TTTGAAGATGCTTCAATTAA+CGG | - | chr4_1:64690971-64690990 | None:intergenic | 25.0% |
| GAAATAGATGATTGAAGAGA+AGG | + | chr4_1:64688574-64688593 | Msa0564140:intron | 30.0% | |
| AGAAGGAAAAACAATGATGT+GGG | - | chr4_1:64688661-64688680 | None:intergenic | 30.0% | |
| AAGAAGGAAAAACAATGATG+TGG | - | chr4_1:64688662-64688681 | None:intergenic | 30.0% | |
| AAAGTGTAAAACCCTTTGTT+TGG | - | chr4_1:64688708-64688727 | None:intergenic | 30.0% | |
| GTTAACAAAGGGAAAGAATA+TGG | - | chr4_1:64688751-64688770 | None:intergenic | 30.0% | |
| TGGAAATTGAAATAGCTAGT+TGG | + | chr4_1:64688851-64688870 | Msa0564140:intron | 30.0% | |
| GGAAATTGAAATAGCTAGTT+GGG | + | chr4_1:64688852-64688871 | Msa0564140:intron | 30.0% | |
| ! | AATATTTTGTAGGTAAGCTG+TGG | + | chr4_1:64689133-64689152 | Msa0564140:intron | 30.0% |
| ! | ATATTTTGTAGGTAAGCTGT+GGG | + | chr4_1:64689134-64689153 | Msa0564140:intron | 30.0% |
| ! | TCCTTTTTATCCTTTTCCTT+AGG | - | chr4_1:64689468-64689487 | None:intergenic | 30.0% |
| AAAAAAGAAAGACAGAGACA+AGG | + | chr4_1:64689500-64689519 | Msa0564140:CDS | 30.0% | |
| ! | ACAGTATAATGGAAACAATG+GGG | + | chr4_1:64689689-64689708 | Msa0564140:CDS | 30.0% |
| AGGAGAATTAAGGATGATAA+TGG | + | chr4_1:64689780-64689799 | Msa0564140:CDS | 30.0% | |
| !! | GAATTAAGGATGATAATGGA+AGG | + | chr4_1:64689784-64689803 | Msa0564140:CDS | 30.0% |
| TTGGATGCTAAGAAAATTGA+TGG | + | chr4_1:64689933-64689952 | Msa0564140:CDS | 30.0% | |
| TGGATGCTAAGAAAATTGAT+GGG | + | chr4_1:64689934-64689953 | Msa0564140:CDS | 30.0% | |
| ! | AATTTTCATCCAAAAGCTGA+TGG | + | chr4_1:64690017-64690036 | Msa0564140:CDS | 30.0% |
| CAGCAGAAAAGAAAAAGTTA+AGG | + | chr4_1:64690157-64690176 | Msa0564140:CDS | 30.0% | |
| !!! | TTTTAATTTATTCAGCTCCG+TGG | - | chr4_1:64690339-64690358 | None:intergenic | 30.0% |
| TTAAAAGAAAGCAACATTGG+TGG | + | chr4_1:64690353-64690372 | Msa0564140:CDS | 30.0% | |
| GTGAAGGAATTTGAATGTAT+AGG | - | chr4_1:64690380-64690399 | None:intergenic | 30.0% | |
| TACATTCAAATTCCTTCACA+CGG | + | chr4_1:64690381-64690400 | Msa0564140:CDS | 30.0% | |
| ! | AAGCATTTGGAATGGAAATT+TGG | - | chr4_1:64690817-64690836 | None:intergenic | 30.0% |
| AACAAGGAATGCAAGATAAA+TGG | + | chr4_1:64690878-64690897 | Msa0564140:CDS | 30.0% | |
| AAAGTCATGCTCTCAGTAAA+GGG | + | chr4_1:64688074-64688093 | Msa0564140:intron | 35.0% | |
| TTTAACATTCTGTTTCGGTG+TGG | + | chr4_1:64688345-64688364 | Msa0564140:intron | 35.0% | |
| ! | AGAGGGCATACAATTTAAGA+AGG | + | chr4_1:64688378-64688397 | Msa0564140:intron | 35.0% |
| TATCAGTCCAACCAAACAAA+TGG | - | chr4_1:64688459-64688478 | None:intergenic | 35.0% | |
| TTCTCTCTCTTATCTAGTGT+GGG | - | chr4_1:64688557-64688576 | None:intergenic | 35.0% | |
| TTTCTCTCTCTTATCTAGTG+TGG | - | chr4_1:64688558-64688577 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTCTTCTCCCCTAG+TGG | + | chr4_1:64688616-64688635 | Msa0564140:intron | 35.0% |
| ! | AAAACCCTTTGTTTGGAAGA+GGG | - | chr4_1:64688701-64688720 | None:intergenic | 35.0% |
| ! | TAAAACCCTTTGTTTGGAAG+AGG | - | chr4_1:64688702-64688721 | None:intergenic | 35.0% |
| TTCAAACGAAAGATGTGAGT+TGG | + | chr4_1:64688831-64688850 | Msa0564140:intron | 35.0% | |
| GTGCAATATAGTCCAAAAGA+AGG | + | chr4_1:64688959-64688978 | Msa0564140:intron | 35.0% | |
| AACTAAAACCCCAAAAAGAG+GGG | - | chr4_1:64689087-64689106 | None:intergenic | 35.0% | |
| CAACTAAAACCCCAAAAAGA+GGG | - | chr4_1:64689088-64689107 | None:intergenic | 35.0% | |
| ACAACTAAAACCCCAAAAAG+AGG | - | chr4_1:64689089-64689108 | None:intergenic | 35.0% | |
| !! | CTGTTTTTCCTGCAAATCAT+CGG | - | chr4_1:64689367-64689386 | None:intergenic | 35.0% |
| ! | ATGATTTGCAGGAAAAACAG+AGG | + | chr4_1:64689367-64689386 | Msa0564140:CDS | 35.0% |
| ! | TGATTTGCAGGAAAAACAGA+GGG | + | chr4_1:64689368-64689387 | Msa0564140:CDS | 35.0% |
| TAAGAAGGACAAAGAGAAGA+AGG | + | chr4_1:64689410-64689429 | Msa0564140:CDS | 35.0% | |
| ACAAAGAGAAGAAGGAAAAG+AGG | + | chr4_1:64689418-64689437 | Msa0564140:CDS | 35.0% | |
| CAAAGAGAAGAAGGAAAAGA+GGG | + | chr4_1:64689419-64689438 | Msa0564140:CDS | 35.0% | |
| GGATAAAAAGCCTAAGGAAA+AGG | + | chr4_1:64689455-64689474 | Msa0564140:CDS | 35.0% | |
| GCCTAAGGAAAAGGATAAAA+AGG | + | chr4_1:64689464-64689483 | Msa0564140:CDS | 35.0% | |
| GAAATCAAGCCTGATAAGAA+GGG | + | chr4_1:64689639-64689658 | Msa0564140:CDS | 35.0% | |
| AGTTTGCAAATCCAAACCAT+AGG | + | chr4_1:64689829-64689848 | Msa0564140:CDS | 35.0% | |
| GAACTGTTAAGTTTATGGCT+AGG | + | chr4_1:64689862-64689881 | Msa0564140:CDS | 35.0% | |
| GCTAAGAAAATTGATGGGAA+AGG | + | chr4_1:64689939-64689958 | Msa0564140:CDS | 35.0% | |
| TGAACTGTAGTATTTCCAAG+AGG | - | chr4_1:64689984-64690003 | None:intergenic | 35.0% | |
| TTGGATGAAAATTTCCAGCA+TGG | - | chr4_1:64690010-64690029 | None:intergenic | 35.0% | |
| AAATACTTCCCCATAGGTTT+GGG | - | chr4_1:64690047-64690066 | None:intergenic | 35.0% | |
| ! | GAAGTATTTCGACAAGAACT+TGG | + | chr4_1:64690058-64690077 | Msa0564140:CDS | 35.0% |
| ! | GTTGATGAAAAGAAAGACGA+AGG | + | chr4_1:64690107-64690126 | Msa0564140:CDS | 35.0% |
| GAAAGACGAAGGAAAAGAAA+AGG | + | chr4_1:64690118-64690137 | Msa0564140:CDS | 35.0% | |
| GTTAAGGAAAAGAAAGAGGA+AGG | + | chr4_1:64690173-64690192 | Msa0564140:CDS | 35.0% | |
| AGAGAAGAAAGATAAGACGA+AGG | + | chr4_1:64690295-64690314 | Msa0564140:CDS | 35.0% | |
| CTCTGACCTATGAGATATAA+TGG | + | chr4_1:64690571-64690590 | Msa0564140:intron | 35.0% | |
| TGACCTATGAGATATAATGG+CGG | + | chr4_1:64690574-64690593 | Msa0564140:intron | 35.0% | |
| TTCTTACAGCCAATGAGAAT+TGG | + | chr4_1:64690723-64690742 | Msa0564140:intron | 35.0% | |
| CAGTGCTAAGATAGAAAACA+AGG | + | chr4_1:64690862-64690881 | Msa0564140:CDS | 35.0% | |
| !! | CTTTAGGTACCGAATATATG+CGG | - | chr4_1:64691024-64691043 | None:intergenic | 35.0% |
| CATATATTCGGTACCTAAAG+TGG | + | chr4_1:64691024-64691043 | Msa0564140:CDS | 35.0% | |
| AAATCAGACCATTCCACTTT+AGG | - | chr4_1:64691040-64691059 | None:intergenic | 35.0% | |
| TAAAGTGGAATGGTCTGATT+TGG | + | chr4_1:64691039-64691058 | Msa0564140:CDS | 35.0% | |
| TACTTGCACGATGACTATTG+TGG | + | chr4_1:64688003-64688022 | Msa0564140:intron | 40.0% | |
| CAAAGTCATGCTCTCAGTAA+AGG | + | chr4_1:64688073-64688092 | Msa0564140:intron | 40.0% | |
| AAGTCATGCTCTCAGTAAAG+GGG | + | chr4_1:64688075-64688094 | Msa0564140:intron | 40.0% | |
| ! | CTTTTGTGGCTAAGAACTTG+TGG | - | chr4_1:64688138-64688157 | None:intergenic | 40.0% |
| TCTTAGCCACAAAAGCGATA+AGG | + | chr4_1:64688143-64688162 | Msa0564140:intron | 40.0% | |
| !!! | CGGTTTTAGGTTAGTTGTTG+CGG | - | chr4_1:64688171-64688190 | None:intergenic | 40.0% |
| GAGTAGTTAGAGAGCTAGTT+AGG | - | chr4_1:64688230-64688249 | None:intergenic | 40.0% | |
| ! | AATATCAAGCTTTGGCTGAC+AGG | - | chr4_1:64688273-64688292 | None:intergenic | 40.0% |
| CGAAGTTCTCTCCATTTGTT+TGG | + | chr4_1:64688445-64688464 | Msa0564140:intron | 40.0% | |
| GTTCTCTCCATTTGTTTGGT+TGG | + | chr4_1:64688449-64688468 | Msa0564140:intron | 40.0% | |
| TCTCTCTCTTATCTAGTGTG+GGG | - | chr4_1:64688556-64688575 | None:intergenic | 40.0% | |
| AGGGAAACAGAGAGAAAAGA+AGG | - | chr4_1:64688678-64688697 | None:intergenic | 40.0% | |
| GGGAATCAGGTTATTGAGTT+TGG | + | chr4_1:64688998-64689017 | Msa0564140:intron | 40.0% | |
| ! | ATGTGTGTTTCCCCTCTTTT+TGG | + | chr4_1:64689074-64689093 | Msa0564140:intron | 40.0% |
| ! | TGTGTGTTTCCCCTCTTTTT+GGG | + | chr4_1:64689075-64689094 | Msa0564140:intron | 40.0% |
| CTCTAATCTTCAATGAGACG+AGG | + | chr4_1:64689209-64689228 | Msa0564140:intron | 40.0% | |
| TTCTCTCTCTTGTTGCTCAT+AGG | + | chr4_1:64689271-64689290 | Msa0564140:intron | 40.0% | |
| AAGGAAAAGAGGGAGAAAGA+AGG | + | chr4_1:64689429-64689448 | Msa0564140:CDS | 40.0% | |
| AAAAGAGGGAGAAAGAAGGA+CGG | + | chr4_1:64689433-64689452 | Msa0564140:CDS | 40.0% | |
| AAGGACAAGGACAAAGACAA+AGG | + | chr4_1:64689519-64689538 | Msa0564140:CDS | 40.0% | |
| AGTAAAACCAGTACTGCTGA+TGG | + | chr4_1:64689564-64689583 | Msa0564140:CDS | 40.0% | |
| TATCAGGCTTGATTTCCTTC+TGG | - | chr4_1:64689635-64689654 | None:intergenic | 40.0% | |
| GGAAATCAAGCCTGATAAGA+AGG | + | chr4_1:64689638-64689657 | Msa0564140:CDS | 40.0% | |
| ACAAAGAGACCCTTCTTATC+AGG | - | chr4_1:64689651-64689670 | None:intergenic | 40.0% | |
| TAATGGAAACAATGGGGAGA+TGG | + | chr4_1:64689695-64689714 | Msa0564140:CDS | 40.0% | |
| TCGAACTCCAGAAGGAATTT+GGG | - | chr4_1:64689759-64689778 | None:intergenic | 40.0% | |
| TGCAAATCCAAACCATAGGA+TGG | + | chr4_1:64689833-64689852 | Msa0564140:CDS | 40.0% | |
| CGAGGGAACTGTTAAGTTTA+TGG | + | chr4_1:64689857-64689876 | Msa0564140:CDS | 40.0% | |
| AAGTTTATGGCTAGGAGTAG+TGG | + | chr4_1:64689870-64689889 | Msa0564140:CDS | 40.0% | |
| GGTGAAAAACTCAGGGATAA+GGG | + | chr4_1:64689909-64689928 | Msa0564140:CDS | 40.0% | |
| AAAACTCAGGGATAAGGGTT+TGG | + | chr4_1:64689914-64689933 | Msa0564140:CDS | 40.0% | |
| ! | TTGGGTATTCCATCAGCTTT+TGG | - | chr4_1:64690029-64690048 | None:intergenic | 40.0% |
| TGATGGAATACCCAAACCTA+TGG | + | chr4_1:64690034-64690053 | Msa0564140:CDS | 40.0% | |
| GATGGAATACCCAAACCTAT+GGG | + | chr4_1:64690035-64690054 | Msa0564140:CDS | 40.0% | |
| ATGGAATACCCAAACCTATG+GGG | + | chr4_1:64690036-64690055 | Msa0564140:CDS | 40.0% | |
| GAAATACTTCCCCATAGGTT+TGG | - | chr4_1:64690048-64690067 | None:intergenic | 40.0% | |
| TTGTCGAAATACTTCCCCAT+AGG | - | chr4_1:64690053-64690072 | None:intergenic | 40.0% | |
| AAGAACTTGGAAGCAACCAT+TGG | + | chr4_1:64690071-64690090 | Msa0564140:CDS | 40.0% | |
| AACCATTGGAGGGAAAGAAA+AGG | + | chr4_1:64690085-64690104 | Msa0564140:CDS | 40.0% | |
| ! | AACCTTTTCTTTCCCTCCAA+TGG | - | chr4_1:64690090-64690109 | None:intergenic | 40.0% |
| GGAAAAGAAAGAGGAAGGAA+AGG | + | chr4_1:64690178-64690197 | Msa0564140:CDS | 40.0% | |
| AAAGAGGAGAAGAAAGGACA+CGG | + | chr4_1:64690251-64690270 | Msa0564140:CDS | 40.0% | |
| GCATACTGAACTCAAAACCA+CGG | + | chr4_1:64690319-64690338 | Msa0564140:CDS | 40.0% | |
| !! | TTCACACGGATTAGCAAGAA+CGG | + | chr4_1:64690395-64690414 | Msa0564140:CDS | 40.0% |
| GCGTTGAAAATCCCAAGAAA+CGG | + | chr4_1:64690435-64690454 | Msa0564140:CDS | 40.0% | |
| TGAAAATCCCAAGAAACGGA+AGG | + | chr4_1:64690439-64690458 | Msa0564140:CDS | 40.0% | |
| GACCTATGAGATATAATGGC+GGG | + | chr4_1:64690575-64690594 | Msa0564140:intron | 40.0% | |
| AACCCGCCATTATATCTCAT+AGG | - | chr4_1:64690580-64690599 | None:intergenic | 40.0% | |
| CACGGAAAATGGAAGGATAT+TGG | + | chr4_1:64690784-64690803 | Msa0564140:CDS | 40.0% | |
| ! | CCTATCTGAAGCATTTGGAA+TGG | - | chr4_1:64690825-64690844 | None:intergenic | 40.0% |
| CCATTCCAAATGCTTCAGAT+AGG | + | chr4_1:64690822-64690841 | Msa0564140:CDS | 40.0% | |
| ! | GTTTTCTATCTTAGCACTGC+TGG | - | chr4_1:64690861-64690880 | None:intergenic | 40.0% |
| !! | TTATTTGAGGGTACTGCAAG+TGG | - | chr4_1:64690920-64690939 | None:intergenic | 40.0% |
| GCTTCAATTAACGGAACAAC+TGG | - | chr4_1:64690962-64690981 | None:intergenic | 40.0% | |
| ATATATGCGGCTTAGGTACT+TGG | - | chr4_1:64691011-64691030 | None:intergenic | 40.0% | |
| GTACCTAAGCCGCATATATT+CGG | + | chr4_1:64691012-64691031 | Msa0564140:CDS | 40.0% | |
| ATTCGGTACCTAAAGTGGAA+TGG | + | chr4_1:64691029-64691048 | Msa0564140:CDS | 40.0% | |
| !! | CTGATTTGGATGGTCAAGAA+TGG | + | chr4_1:64691053-64691072 | Msa0564140:CDS | 40.0% |
| !! | ACAGCTTTTTCCCATACTTG+CGG | - | chr4_1:64691145-64691164 | None:intergenic | 40.0% |
| GTATGGAATGACATATGGCA+GGG | - | chr4_1:64691194-64691213 | None:intergenic | 40.0% | |
| AGTATGGAATGACATATGGC+AGG | - | chr4_1:64691195-64691214 | None:intergenic | 40.0% | |
| GATGACTATTGTGGTTCCGT+AGG | + | chr4_1:64688012-64688031 | Msa0564140:intron | 45.0% | |
| ATGCTCTCAGTAAAGGGGTA+AGG | + | chr4_1:64688080-64688099 | Msa0564140:intron | 45.0% | |
| TGCTCTCAGTAAAGGGGTAA+GGG | + | chr4_1:64688081-64688100 | Msa0564140:intron | 45.0% | |
| AAGGGGTAAGGGATAAGTCT+TGG | + | chr4_1:64688092-64688111 | Msa0564140:intron | 45.0% | |
| GGTAAGGGATAAGTCTTGGT+GGG | + | chr4_1:64688096-64688115 | Msa0564140:intron | 45.0% | |
| TTGTGGCTAAGAACTTGTGG+TGG | - | chr4_1:64688135-64688154 | None:intergenic | 45.0% | |
| GGTGTGGAGAGAAAATGAGA+GGG | + | chr4_1:64688361-64688380 | Msa0564140:intron | 45.0% | |
| ! | GTGTGTTTCCCCTCTTTTTG+GGG | + | chr4_1:64689076-64689095 | Msa0564140:intron | 45.0% |
| TCTCTCTTGTTGCTCATAGG+TGG | + | chr4_1:64689274-64689293 | Msa0564140:intron | 45.0% | |
| AAAGAGGGAGAAAGAAGGAC+GGG | + | chr4_1:64689434-64689453 | Msa0564140:CDS | 45.0% | |
| AGGACGGGATAAAAAGCCTA+AGG | + | chr4_1:64689449-64689468 | Msa0564140:CDS | 45.0% | |
| GAAAGACAGAGACAAGGACA+AGG | + | chr4_1:64689506-64689525 | Msa0564140:CDS | 45.0% | |
| GGCTAGAGAGAACAATCATC+TGG | + | chr4_1:64689716-64689735 | Msa0564140:CDS | 45.0% | |
| AGAGAACAATCATCTGGCTG+AGG | + | chr4_1:64689722-64689741 | Msa0564140:CDS | 45.0% | |
| CAAGGATCCCAAATTCCTTC+TGG | + | chr4_1:64689749-64689768 | Msa0564140:CDS | 45.0% | |
| CTCGAACTCCAGAAGGAATT+TGG | - | chr4_1:64689760-64689779 | None:intergenic | 45.0% | |
| !! | AATTCCTTCTGGAGTTCGAG+AGG | + | chr4_1:64689760-64689779 | Msa0564140:CDS | 45.0% |
| GGAGTTCGAGAGGAGAATTA+AGG | + | chr4_1:64689770-64689789 | Msa0564140:CDS | 45.0% | |
| !! | AAGGATGATAATGGAAGGGC+TGG | + | chr4_1:64689789-64689808 | Msa0564140:CDS | 45.0% |
| ! | TGGAAGGGCTGGTAATCAAT+TGG | + | chr4_1:64689800-64689819 | Msa0564140:CDS | 45.0% |
| ! | AGTAGTGGAACCTTGCATGA+TGG | + | chr4_1:64689885-64689904 | Msa0564140:CDS | 45.0% |
| ! | TTTTTCACCGCCATCATGCA+AGG | - | chr4_1:64689898-64689917 | None:intergenic | 45.0% |
| !! | ATGATGGCGGTGAAAAACTC+AGG | + | chr4_1:64689901-64689920 | Msa0564140:CDS | 45.0% |
| !! | TGATGGCGGTGAAAAACTCA+GGG | + | chr4_1:64689902-64689921 | Msa0564140:CDS | 45.0% |
| CGGTGAAAAACTCAGGGATA+AGG | + | chr4_1:64689908-64689927 | Msa0564140:CDS | 45.0% | |
| ACTACAGTTCAGAACCATGC+TGG | + | chr4_1:64689993-64690012 | Msa0564140:CDS | 45.0% | |
| AACTTGGAAGCAACCATTGG+AGG | + | chr4_1:64690074-64690093 | Msa0564140:CDS | 45.0% | |
| ACTTGGAAGCAACCATTGGA+GGG | + | chr4_1:64690075-64690094 | Msa0564140:CDS | 45.0% | |
| AAGAGGAGAAGAAAGGACAC+GGG | + | chr4_1:64690252-64690271 | Msa0564140:CDS | 45.0% | |
| GTTCTTGCTAATCCGTGTGA+AGG | - | chr4_1:64690396-64690415 | None:intergenic | 45.0% | |
| AACGGCCATGAGAATTCTGT+TGG | + | chr4_1:64690413-64690432 | Msa0564140:CDS | 45.0% | |
| CAACGCCAACAGAATTCTCA+TGG | - | chr4_1:64690421-64690440 | None:intergenic | 45.0% | |
| TCAGTCTCCTTCCGTTTCTT+GGG | - | chr4_1:64690449-64690468 | None:intergenic | 45.0% | |
| GAGTCAAATGGAGTTCTACG+TGG | + | chr4_1:64690467-64690486 | Msa0564140:CDS | 45.0% | |
| CTTACTCGGCCAATTCTCAT+TGG | - | chr4_1:64690735-64690754 | None:intergenic | 45.0% | |
| ! | GATGGTCTTGGCAACTTACT+CGG | - | chr4_1:64690749-64690768 | None:intergenic | 45.0% |
| ! | TCCTTCCATTTTCCGTGAGA+GGG | - | chr4_1:64690781-64690800 | None:intergenic | 45.0% |
| ! | ATCCTTCCATTTTCCGTGAG+AGG | - | chr4_1:64690782-64690801 | None:intergenic | 45.0% |
| TTCTATCTTAGCACTGCTGG+TGG | - | chr4_1:64690858-64690877 | None:intergenic | 45.0% | |
| !! | GCAGTGGGAGTCTTATTTGA+GGG | - | chr4_1:64690932-64690951 | None:intergenic | 45.0% |
| !! | TGCAGTGGGAGTCTTATTTG+AGG | - | chr4_1:64690933-64690952 | None:intergenic | 45.0% |
| TACTTGGTATCTGGATGAGG+TGG | - | chr4_1:64690995-64691014 | None:intergenic | 45.0% | |
| AGGTACTTGGTATCTGGATG+AGG | - | chr4_1:64690998-64691017 | None:intergenic | 45.0% | |
| GTACCGAATATATGCGGCTT+AGG | - | chr4_1:64691018-64691037 | None:intergenic | 45.0% | |
| !! | GTGGAATGGTCTGATTTGGA+TGG | + | chr4_1:64691043-64691062 | Msa0564140:CDS | 45.0% |
| TTCACAAGAAAGAGAACCCG+TGG | + | chr4_1:64691093-64691112 | Msa0564140:CDS | 45.0% | |
| ! | AGCCTCTGAAGATTTCACCA+CGG | - | chr4_1:64691113-64691132 | None:intergenic | 45.0% |
| TGGTGAAATCTTCAGAGGCT+GGG | + | chr4_1:64691113-64691132 | Msa0564140:CDS | 45.0% | |
| CTTGATCAGTGTTAGCGGTG+CGG | - | chr4_1:64687951-64687970 | None:intergenic | 50.0% | |
| GGCAGCTTGATCAGTGTTAG+CGG | - | chr4_1:64687956-64687975 | None:intergenic | 50.0% | |
| !!! | TCTGGTGGTTTTGGTGAAGG+TGG | - | chr4_1:64687977-64687996 | None:intergenic | 50.0% |
| !!! | CCATCTGGTGGTTTTGGTGA+AGG | - | chr4_1:64687980-64687999 | None:intergenic | 50.0% |
| CCTTCACCAAAACCACCAGA+TGG | + | chr4_1:64687977-64687996 | Msa0564140:CDS | 50.0% | |
| TCACCAAAACCACCAGATGG+TGG | + | chr4_1:64687980-64687999 | Msa0564140:CDS | 50.0% | |
| ! | GTACCACCATCTGGTGGTTT+TGG | - | chr4_1:64687986-64688005 | None:intergenic | 50.0% |
| ATCGTGCAAGTACCACCATC+TGG | - | chr4_1:64687995-64688014 | None:intergenic | 50.0% | |
| GACTATTGTGGTTCCGTAGG+AGG | + | chr4_1:64688015-64688034 | Msa0564140:intron | 50.0% | |
| GGGTAAGGGATAAGTCTTGG+TGG | + | chr4_1:64688095-64688114 | Msa0564140:intron | 50.0% | |
| ATAAGTCTTGGTGGGAAGCG+TGG | + | chr4_1:64688104-64688123 | Msa0564140:intron | 50.0% | |
| !! | GCGGATCCTTATCGCTTTTG+TGG | - | chr4_1:64688152-64688171 | None:intergenic | 50.0% |
| CGGTGTGGAGAGAAAATGAG+AGG | + | chr4_1:64688360-64688379 | Msa0564140:intron | 50.0% | |
| TCCCTCCCTCTTCCAAACAA+AGG | + | chr4_1:64688693-64688712 | Msa0564140:intron | 50.0% | |
| ! | CCCTTTGTTTGGAAGAGGGA+GGG | - | chr4_1:64688697-64688716 | None:intergenic | 50.0% |
| CCCTCCCTCTTCCAAACAAA+GGG | + | chr4_1:64688694-64688713 | Msa0564140:intron | 50.0% | |
| ! | ACCCTTTGTTTGGAAGAGGG+AGG | - | chr4_1:64688698-64688717 | None:intergenic | 50.0% |
| TCCAAAAGAAGGACGCGAAC+TGG | + | chr4_1:64688970-64688989 | Msa0564140:intron | 50.0% | |
| CCAAAAGAAGGACGCGAACT+GGG | + | chr4_1:64688971-64688990 | Msa0564140:intron | 50.0% | |
| ! | TCTTCGGACCGATGATTTGC+AGG | + | chr4_1:64689356-64689375 | Msa0564140:CDS | 50.0% |
| ACCAGTACTGCTGATGGCAA+AGG | + | chr4_1:64689570-64689589 | Msa0564140:CDS | 50.0% | |
| TCCTTTGCCATCAGCAGTAC+TGG | - | chr4_1:64689574-64689593 | None:intergenic | 50.0% | |
| GCTGATGGCAAAGGACTTTC+TGG | + | chr4_1:64689579-64689598 | Msa0564140:CDS | 50.0% | |
| TTTACCTGCAGTGAGACCCT+CGG | - | chr4_1:64689610-64689629 | None:intergenic | 50.0% | |
| CACTGCAGGTAAACTCCAGA+AGG | + | chr4_1:64689617-64689636 | Msa0564140:CDS | 50.0% | |
| TCATCTGGCTGAGGAGAACA+AGG | + | chr4_1:64689731-64689750 | Msa0564140:CDS | 50.0% | |
| TTCTCCTCTCGAACTCCAGA+AGG | - | chr4_1:64689767-64689786 | None:intergenic | 50.0% | |
| TCCAAACCATAGGATGGACG+AGG | + | chr4_1:64689839-64689858 | Msa0564140:CDS | 50.0% | |
| CCAAACCATAGGATGGACGA+GGG | + | chr4_1:64689840-64689859 | Msa0564140:CDS | 50.0% | |
| AGTGGAACCTTGCATGATGG+CGG | + | chr4_1:64689888-64689907 | Msa0564140:CDS | 50.0% | |
| ! | TGGGAAAGGAATGCTTGCTG+AGG | + | chr4_1:64689953-64689972 | Msa0564140:CDS | 50.0% |
| ACACGGGAAGGACAAAGACA+GGG | + | chr4_1:64690268-64690287 | Msa0564140:CDS | 50.0% | |
| CTCAGTCTCCTTCCGTTTCT+TGG | - | chr4_1:64690450-64690469 | None:intergenic | 50.0% | |
| CGGAAGGAGACTGAGTCAAA+TGG | + | chr4_1:64690455-64690474 | Msa0564140:CDS | 50.0% | |
| ! | TCCATTTTCCGTGAGAGGGT+GGG | - | chr4_1:64690777-64690796 | None:intergenic | 50.0% |
| ! | TTCCATTTTCCGTGAGAGGG+TGG | - | chr4_1:64690778-64690797 | None:intergenic | 50.0% |
| ACCCTCTCACGGAAAATGGA+AGG | + | chr4_1:64690777-64690796 | Msa0564140:CDS | 50.0% | |
| ! | CCTGGCCTATCTGAAGCATT+TGG | - | chr4_1:64690830-64690849 | None:intergenic | 50.0% |
| CCAAATGCTTCAGATAGGCC+AGG | + | chr4_1:64690827-64690846 | Msa0564140:CDS | 50.0% | |
| ACAACTGGCACAGTTGCAGT+GGG | - | chr4_1:64690947-64690966 | None:intergenic | 50.0% | |
| AACAACTGGCACAGTTGCAG+TGG | - | chr4_1:64690948-64690967 | None:intergenic | 50.0% | |
| CGGCTTAGGTACTTGGTATC+TGG | - | chr4_1:64691004-64691023 | None:intergenic | 50.0% | |
| ACCCGTGGTGAAATCTTCAG+AGG | + | chr4_1:64691108-64691127 | Msa0564140:CDS | 50.0% | |
| ! | GCCTCTGAAGATTTCACCAC+GGG | - | chr4_1:64691112-64691131 | None:intergenic | 50.0% |
| GTGGTGAAATCTTCAGAGGC+TGG | + | chr4_1:64691112-64691131 | Msa0564140:CDS | 50.0% | |
| GGTGAAATCTTCAGAGGCTG+GGG | + | chr4_1:64691114-64691133 | Msa0564140:CDS | 50.0% | |
| TGGGGAAACACCGCAAGTAT+GGG | + | chr4_1:64691132-64691151 | Msa0564140:CDS | 50.0% | |
| GGCAGGGCAAAAATATCTGC+TGG | - | chr4_1:64691178-64691197 | None:intergenic | 50.0% | |
| GTGCAAGTACCACCATCTGG+TGG | - | chr4_1:64687992-64688011 | None:intergenic | 55.0% | |
| TTGTGGTTCCGTAGGAGGAG+TGG | + | chr4_1:64688020-64688039 | Msa0564140:intron | 55.0% | |
| TTCCGTAGGAGGAGTGGAAG+AGG | + | chr4_1:64688026-64688045 | Msa0564140:intron | 55.0% | |
| TCCGTAGGAGGAGTGGAAGA+GGG | + | chr4_1:64688027-64688046 | Msa0564140:intron | 55.0% | |
| TCCCTCTTCCACTCCTCCTA+CGG | - | chr4_1:64688031-64688050 | None:intergenic | 55.0% | |
| GAGGAGTGGAAGAGGGAATG+CGG | + | chr4_1:64688034-64688053 | Msa0564140:intron | 55.0% | |
| ! | CCCAGTTCGCGTCCTTCTTT+TGG | - | chr4_1:64688974-64688993 | None:intergenic | 55.0% |
| AAGGACGCGAACTGGGTTGT+GGG | + | chr4_1:64688978-64688997 | Msa0564140:intron | 55.0% | |
| CGAACTGGGTTGTGGGAATC+AGG | + | chr4_1:64688985-64689004 | Msa0564140:intron | 55.0% | |
| AGGACTTTCTGGACAAGCCG+AGG | + | chr4_1:64689590-64689609 | Msa0564140:CDS | 55.0% | |
| GGACTTTCTGGACAAGCCGA+GGG | + | chr4_1:64689591-64689610 | Msa0564140:CDS | 55.0% | |
| CCCTCGTCCATCCTATGGTT+TGG | - | chr4_1:64689843-64689862 | None:intergenic | 55.0% | |
| CAGTTCCCTCGTCCATCCTA+TGG | - | chr4_1:64689848-64689867 | None:intergenic | 55.0% | |
| CTTGCTGAGGTACGACCTCT+TGG | + | chr4_1:64689966-64689985 | Msa0564140:CDS | 55.0% | |
| GGAGAAGAAAGGACACGGGA+AGG | + | chr4_1:64690256-64690275 | Msa0564140:CDS | 55.0% | |
| GACACGGGAAGGACAAAGAC+AGG | + | chr4_1:64690267-64690286 | Msa0564140:CDS | 55.0% | |
| ATCCTCTTCCCACCCTCTCA+CGG | + | chr4_1:64690766-64690785 | Msa0564140:CDS | 55.0% | |
| TCCCACCCTCTCACGGAAAA+TGG | + | chr4_1:64690773-64690792 | Msa0564140:CDS | 55.0% | |
| CTGGGGAAACACCGCAAGTA+TGG | + | chr4_1:64691131-64691150 | Msa0564140:CDS | 55.0% | |
| GAAGGACGCGAACTGGGTTG+TGG | + | chr4_1:64688977-64688996 | Msa0564140:intron | 60.0% | |
| GGGTGGGAAGAGGATGGTCT+TGG | - | chr4_1:64690761-64690780 | None:intergenic | 60.0% | |
| GTGAGAGGGTGGGAAGAGGA+TGG | - | chr4_1:64690767-64690786 | None:intergenic | 60.0% | |
| TTCCGTGAGAGGGTGGGAAG+AGG | - | chr4_1:64690771-64690790 | None:intergenic | 60.0% | |
| GCACTGCTGGTGGCTATTCC+TGG | - | chr4_1:64690848-64690867 | None:intergenic | 60.0% | |
| CAAGCCGAGGGTCTCACTGC+AGG | + | chr4_1:64689603-64689622 | Msa0564140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64687926 | 64691216 | 64687926 | ID=Msa0564140;Name=Msa0564140 |
| chr4_1 | mRNA | 64687926 | 64691216 | 64687926 | ID=Msa0564140-mRNA-1;Parent=Msa0564140;Name=Msa0564140-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.66|1|1|3|0|570 |
| chr4_1 | exon | 64687926 | 64688001 | 64687926 | ID=Msa0564140-mRNA-1:exon:20739;Parent=Msa0564140-mRNA-1 |
| chr4_1 | exon | 64689337 | 64690488 | 64689337 | ID=Msa0564140-mRNA-1:exon:20740;Parent=Msa0564140-mRNA-1 |
| chr4_1 | exon | 64690732 | 64691216 | 64690732 | ID=Msa0564140-mRNA-1:exon:20741;Parent=Msa0564140-mRNA-1 |
| chr4_1 | CDS | 64687926 | 64688001 | 64687926 | ID=Msa0564140-mRNA-1:cds;Parent=Msa0564140-mRNA-1 |
| chr4_1 | CDS | 64689337 | 64690488 | 64689337 | ID=Msa0564140-mRNA-1:cds;Parent=Msa0564140-mRNA-1 |
| chr4_1 | CDS | 64690732 | 64691216 | 64690732 | ID=Msa0564140-mRNA-1:cds;Parent=Msa0564140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
