Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264310 | XP_013465396.1 | 93.218 | 693 | 42 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264310 | sp|F4HSD5|TRM32_ARATH | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 4.09e-36 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264310 | A0A072VCX1 | 93.218 | 693 | 42 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026630 | Msa0264310 | 0.803796 | 2.937465e-49 | -8.615850e-47 |
| Msa0032080 | Msa0264310 | 0.803767 | 2.978874e-49 | -8.615850e-47 |
| Msa0033850 | Msa0264310 | 0.812490 | 4.130749e-51 | -8.615850e-47 |
| Msa0034480 | Msa0264310 | 0.815439 | 9.239317e-52 | -8.615850e-47 |
| Msa0042550 | Msa0264310 | 0.806973 | 6.340186e-50 | -8.615850e-47 |
| Msa0045910 | Msa0264310 | 0.808319 | 3.283119e-50 | -8.615850e-47 |
| Msa0061500 | Msa0264310 | 0.800605 | 1.332586e-48 | -8.615850e-47 |
| Msa0081620 | Msa0264310 | 0.835370 | 1.745981e-56 | -8.615850e-47 |
| Msa0081630 | Msa0264310 | 0.819411 | 1.177981e-52 | -8.615850e-47 |
| Msa0090970 | Msa0264310 | 0.806183 | 9.310396e-50 | -8.615850e-47 |
| Msa0092410 | Msa0264310 | 0.844985 | 5.383366e-59 | -8.615850e-47 |
| Msa0102140 | Msa0264310 | 0.813730 | 2.207266e-51 | -8.615850e-47 |
| Msa0111080 | Msa0264310 | 0.810938 | 8.984511e-51 | -8.615850e-47 |
| Msa0117520 | Msa0264310 | 0.833261 | 5.901641e-56 | -8.615850e-47 |
| Msa0138020 | Msa0264310 | 0.808806 | 2.584287e-50 | -8.615850e-47 |
| Msa0139000 | Msa0264310 | 0.805668 | 1.194616e-49 | -8.615850e-47 |
| Msa0142280 | Msa0264310 | 0.803328 | 3.674029e-49 | -8.615850e-47 |
| Msa0152560 | Msa0264310 | 0.832783 | 7.760081e-56 | -8.615850e-47 |
| Msa0160960 | Msa0264310 | 0.817857 | 2.653266e-52 | -8.615850e-47 |
| Msa0172080 | Msa0264310 | 0.813626 | 2.327381e-51 | -8.615850e-47 |
| Msa0173960 | Msa0264310 | 0.822434 | 2.373927e-53 | -8.615850e-47 |
| Msa0178510 | Msa0264310 | 0.803146 | 4.007576e-49 | -8.615850e-47 |
| Msa0183450 | Msa0264310 | 0.810533 | 1.099480e-50 | -8.615850e-47 |
| Msa0186320 | Msa0264310 | 0.841495 | 4.589933e-58 | -8.615850e-47 |
| Msa0186950 | Msa0264310 | 0.810173 | 1.314625e-50 | -8.615850e-47 |
| Msa0187830 | Msa0264310 | 0.826890 | 2.116536e-54 | -8.615850e-47 |
| Msa0190530 | Msa0264310 | 0.804235 | 2.380809e-49 | -8.615850e-47 |
| Msa0197610 | Msa0264310 | 0.808190 | 3.497867e-50 | -8.615850e-47 |
| Msa0204840 | Msa0264310 | 0.806754 | 7.054072e-50 | -8.615850e-47 |
| Msa0218370 | Msa0264310 | 0.801260 | 9.792474e-49 | -8.615850e-47 |
| Msa0218460 | Msa0264310 | 0.814237 | 1.706239e-51 | -8.615850e-47 |
| Msa0220750 | Msa0264310 | 0.812810 | 3.515910e-51 | -8.615850e-47 |
| Msa0222870 | Msa0264310 | 0.898666 | 4.243720e-77 | -8.615850e-47 |
| Msa0222980 | Msa0264310 | 0.964773 | 9.459073e-124 | -8.615850e-47 |
| Msa0227360 | Msa0264310 | 0.807499 | 4.907157e-50 | -8.615850e-47 |
| Msa0240270 | Msa0264310 | 0.845959 | 2.933558e-59 | -8.615850e-47 |
| Msa0243480 | Msa0264310 | 0.803841 | 2.875739e-49 | -8.615850e-47 |
| Msa0244190 | Msa0264310 | 0.808896 | 2.472061e-50 | -8.615850e-47 |
| Msa0264310 | Msa0269560 | 0.857931 | 1.165772e-62 | -8.615850e-47 |
| Msa0264310 | Msa0271550 | 0.813987 | 1.938072e-51 | -8.615850e-47 |
| Msa0264310 | Msa0282720 | 0.805465 | 1.317628e-49 | -8.615850e-47 |
| Msa0264310 | Msa0284450 | 0.820305 | 7.359411e-53 | -8.615850e-47 |
| Msa0264310 | Msa0299660 | 0.804095 | 2.546774e-49 | -8.615850e-47 |
| Msa0264310 | Msa0302840 | 0.819667 | 1.029916e-52 | -8.615850e-47 |
| Msa0264310 | Msa0314070 | 0.801265 | 9.769250e-49 | -8.615850e-47 |
| Msa0264310 | Msa0321080 | 0.822512 | 2.276780e-53 | -8.615850e-47 |
| Msa0264310 | Msa0322680 | 0.806259 | 8.971551e-50 | -8.615850e-47 |
| Msa0264310 | Msa0364790 | 0.809474 | 1.858994e-50 | -8.615850e-47 |
| Msa0264310 | Msa0371950 | 0.821060 | 4.935538e-53 | -8.615850e-47 |
| Msa0264310 | Msa0386010 | 0.836650 | 8.265129e-57 | -8.615850e-47 |
| Msa0264310 | Msa0389910 | 0.800471 | 1.418761e-48 | -8.615850e-47 |
| Msa0264310 | Msa0397270 | 0.826120 | 3.229654e-54 | -8.615850e-47 |
| Msa0264310 | Msa0403490 | 0.834805 | 2.422934e-56 | -8.615850e-47 |
| Msa0264310 | Msa0414140 | 0.801254 | 9.818773e-49 | -8.615850e-47 |
| Msa0264310 | Msa0422180 | 0.834415 | 3.037354e-56 | -8.615850e-47 |
| Msa0264310 | Msa0455760 | 0.815066 | 1.118235e-51 | -8.615850e-47 |
| Msa0264310 | Msa0457990 | 0.968850 | 2.875829e-129 | -8.615850e-47 |
| Msa0264310 | Msa0466010 | 0.811425 | 7.045471e-51 | -8.615850e-47 |
| Msa0264310 | Msa0470540 | 0.807811 | 4.211991e-50 | -8.615850e-47 |
| Msa0264310 | Msa0470880 | 0.801202 | 1.006432e-48 | -8.615850e-47 |
| Msa0264310 | Msa0521270 | 0.813771 | 2.162611e-51 | -8.615850e-47 |
| Msa0264310 | Msa0525610 | 0.819622 | 1.054267e-52 | -8.615850e-47 |
| Msa0264310 | Msa0545050 | 0.804380 | 2.221572e-49 | -8.615850e-47 |
| Msa0264310 | Msa0557410 | 0.810952 | 8.925191e-51 | -8.615850e-47 |
| Msa0264310 | Msa0566350 | 0.822399 | 2.418317e-53 | -8.615850e-47 |
| Msa0264310 | Msa0566750 | 0.830587 | 2.700995e-55 | -8.615850e-47 |
| Msa0264310 | Msa0661720 | 0.841556 | 4.422710e-58 | -8.615850e-47 |
| Msa0264310 | Msa0667740 | 0.800033 | 1.742356e-48 | -8.615850e-47 |
| Msa0264310 | Msa0673120 | 0.822773 | 1.980027e-53 | -8.615850e-47 |
| Msa0264310 | Msa0705990 | 0.807653 | 4.551431e-50 | -8.615850e-47 |
| Msa0264310 | Msa0713380 | 0.821546 | 3.812389e-53 | -8.615850e-47 |
| Msa0264310 | Msa0714990 | 0.805849 | 1.094287e-49 | -8.615850e-47 |
| Msa0264310 | Msa0721340 | 0.817906 | 2.585505e-52 | -8.615850e-47 |
| Msa0264310 | Msa0795340 | 0.825238 | 5.227803e-54 | -8.615850e-47 |
| Msa0264310 | Msa0812950 | 0.821999 | 2.995631e-53 | -8.615850e-47 |
| Msa0264310 | Msa0836650 | 0.820762 | 5.779368e-53 | -8.615850e-47 |
| Msa0264310 | Msa0862280 | 0.824150 | 9.431358e-54 | -8.615850e-47 |
| Msa0264310 | Msa0863720 | 0.823887 | 1.087113e-53 | -8.615850e-47 |
| Msa0264310 | Msa0894710 | 0.810388 | 1.181777e-50 | -8.615850e-47 |
| Msa0264310 | Msa0898320 | 0.804558 | 2.039617e-49 | -8.615850e-47 |
| Msa0264310 | Msa0902830 | 0.823000 | 1.753280e-53 | -8.615850e-47 |
| Msa0264310 | Msa0960390 | 0.818982 | 1.474889e-52 | -8.615850e-47 |
| Msa0264310 | Msa0972810 | 0.847379 | 1.200318e-59 | -8.615850e-47 |
| Msa0264310 | Msa0981040 | 0.813358 | 2.665429e-51 | -8.615850e-47 |
| Msa0264310 | Msa0994910 | 0.815619 | 8.423615e-52 | -8.615850e-47 |
| Msa0264310 | Msa1009120 | 0.816462 | 5.462825e-52 | -8.615850e-47 |
| Msa0264310 | Msa1024680 | 0.825441 | 4.680186e-54 | -8.615850e-47 |
| Msa0264310 | Msa1026640 | 0.803238 | 3.834661e-49 | -8.615850e-47 |
| Msa0264310 | Msa1029620 | 0.803269 | 3.778934e-49 | -8.615850e-47 |
| Msa0264310 | Msa1063360 | 0.804542 | 2.055170e-49 | -8.615850e-47 |
| Msa0264310 | Msa1063400 | 0.851043 | 1.147044e-60 | -8.615850e-47 |
| Msa0264310 | Msa1063420 | 0.815543 | 8.762254e-52 | -8.615850e-47 |
| Msa0264310 | Msa1068480 | 0.815095 | 1.102032e-51 | -8.615850e-47 |
| Msa0264310 | Msa1107260 | 0.818528 | 1.870466e-52 | -8.615850e-47 |
| Msa0264310 | Msa1122150 | 0.824086 | 9.765735e-54 | -8.615850e-47 |
| Msa0264310 | Msa1137780 | 0.806182 | 9.312137e-50 | -8.615850e-47 |
| Msa0264310 | Msa1143020 | 0.834172 | 3.495223e-56 | -8.615850e-47 |
| Msa0264310 | Msa1150900 | 0.824440 | 8.062338e-54 | -8.615850e-47 |
| Msa0264310 | Msa1160560 | 0.822653 | 2.111145e-53 | -8.615850e-47 |
| Msa0264310 | Msa1171140 | 0.800832 | 1.197586e-48 | -8.615850e-47 |
| Msa0264310 | Msa1173490 | 0.837961 | 3.815716e-57 | -8.615850e-47 |
| Msa0264310 | Msa1200250 | 0.808571 | 2.900503e-50 | -8.615850e-47 |
| Msa0264310 | Msa1207310 | 0.801058 | 1.077071e-48 | -8.615850e-47 |
| Msa0264310 | Msa1209190 | 0.815152 | 1.070324e-51 | -8.615850e-47 |
| Msa0264310 | Msa1209860 | 0.815401 | 9.420711e-52 | -8.615850e-47 |
| Msa0264310 | Msa1214170 | 0.844031 | 9.722229e-59 | -8.615850e-47 |
| Msa0264310 | Msa1221330 | 0.814645 | 1.386203e-51 | -8.615850e-47 |
| Msa0264310 | Msa1229940 | 0.814949 | 1.187208e-51 | -8.615850e-47 |
| Msa0264310 | Msa1235390 | 0.824094 | 9.723204e-54 | -8.615850e-47 |
| Msa0264310 | Msa1236440 | 0.842140 | 3.101390e-58 | -8.615850e-47 |
| Msa0264310 | Msa1260680 | 0.804695 | 1.908921e-49 | -8.615850e-47 |
| Msa0264310 | Msa1270660 | 0.801209 | 1.002865e-48 | -8.615850e-47 |
| Msa0264310 | Msa1270730 | 0.811450 | 6.960325e-51 | -8.615850e-47 |
| Msa0264310 | Msa1272010 | 0.805211 | 1.489067e-49 | -8.615850e-47 |
| Msa0264310 | Msa1275510 | 0.805676 | 1.189897e-49 | -8.615850e-47 |
| Msa0264310 | Msa1277670 | 0.843612 | 1.259136e-58 | -8.615850e-47 |
| Msa0264310 | Msa1279480 | 0.817634 | 2.978828e-52 | -8.615850e-47 |
| Msa0264310 | Msa1291450 | 0.821448 | 4.016268e-53 | -8.615850e-47 |
| Msa0264310 | Msa1332050 | 0.808795 | 2.598022e-50 | -8.615850e-47 |
| Msa0264310 | Msa1335230 | 0.825666 | 4.138563e-54 | -8.615850e-47 |
| Msa0264310 | Msa1338400 | 0.803653 | 3.145667e-49 | -8.615850e-47 |
| Msa0264310 | Msa1349450 | 0.808809 | 2.580381e-50 | -8.615850e-47 |
| Msa0264310 | Msa1355890 | 0.800129 | 1.666089e-48 | -8.615850e-47 |
| Msa0264310 | Msa1360020 | 0.846337 | 2.313489e-59 | -8.615850e-47 |
| Msa0264310 | Msa1369920 | -0.804760 | 1.850309e-49 | -8.615850e-47 |
| Msa0264310 | Msa1372150 | 0.810085 | 1.373431e-50 | -8.615850e-47 |
| Msa0264310 | Msa1378680 | 0.819118 | 1.373534e-52 | -8.615850e-47 |
| Msa0264310 | Msa1419840 | 0.813172 | 2.927623e-51 | -8.615850e-47 |
| Msa0264310 | Msa1423820 | 0.831710 | 1.430229e-55 | -8.615850e-47 |
| Msa0264310 | Msa1424630 | 0.820085 | 8.264074e-53 | -8.615850e-47 |
| Msa0264310 | Msa1425260 | 0.804910 | 1.721564e-49 | -8.615850e-47 |
| Msa0264310 | Msa1430130 | 0.818945 | 1.504009e-52 | -8.615850e-47 |
| Msa0264310 | Msa1430550 | 0.843593 | 1.273372e-58 | -8.615850e-47 |
| Msa0264310 | Msa1460750 | 0.818773 | 1.645385e-52 | -8.615850e-47 |
| Msa0264310 | Msa1462360 | 0.813077 | 3.072679e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264310 | MtrunA17_Chr2g0328111 | 93.218 | 693 | 42 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1315 |
| Msa0264310 | MtrunA17_Chr1g0169831 | 40.361 | 166 | 98 | 1 | 525 | 689 | 708 | 873 | 9.79e-35 | 141 |
| Msa0264310 | MtrunA17_Chr4g0010021 | 34.637 | 179 | 97 | 4 | 510 | 688 | 390 | 548 | 1.18e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264310 | AT5G02390.1 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 1.10e-50 | 189 |
| Msa0264310 | AT5G02390.3 | 29.599 | 598 | 323 | 23 | 118 | 679 | 289 | 824 | 1.10e-50 | 189 |
| Msa0264310 | AT1G07620.2 | 26.695 | 708 | 365 | 27 | 1 | 687 | 1 | 575 | 2.42e-39 | 154 |
| Msa0264310 | AT1G07620.4 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 4.16e-37 | 146 |
| Msa0264310 | AT1G07620.3 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 4.16e-37 | 146 |
| Msa0264310 | AT1G07620.1 | 26.093 | 709 | 342 | 27 | 1 | 687 | 1 | 549 | 4.16e-37 | 146 |
| Msa0264310 | AT5G02390.2 | 26.667 | 510 | 277 | 22 | 118 | 592 | 289 | 736 | 5.17e-22 | 101 |
Find 108 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGACATATTTGAAAT+TGG | 0.199181 | 2_2:-64243900 | None:intergenic |
| ATGTTGATTAATTTGTAAAT+AGG | 0.210912 | 2_2:+64244504 | Msa0264310:three_prime_UTR |
| ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 2_2:-64242598 | None:intergenic |
| GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 2_2:+64242647 | Msa0264310:CDS |
| AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 2_2:-64243384 | None:intergenic |
| ACAAAATTGATTATTTGTTA+TGG | 0.255385 | 2_2:+64241698 | Msa0264310:exon |
| ACTATCTTGTTAAAGAAGTA+TGG | 0.258917 | 2_2:+64244197 | Msa0264310:CDS |
| CAAAATTGATTATTTGTTAT+GGG | 0.272288 | 2_2:+64241699 | Msa0264310:exon |
| TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 2_2:-64243534 | None:intergenic |
| TTCTTCTAAAGCTGTGAATA+AGG | 0.278916 | 2_2:-64243999 | None:intergenic |
| TAGTTGAATGCAAAGGGTTT+TGG | 0.302998 | 2_2:-64244148 | None:intergenic |
| AATTGAAATGTCTCTGTTAA+GGG | 0.304642 | 2_2:-64242428 | None:intergenic |
| TAGAGTTGCTTAAAGAGTTT+TGG | 0.309502 | 2_2:+64244548 | Msa0264310:three_prime_UTR |
| GGTCTACCGTGTATCGCATT+TGG | 0.311231 | 2_2:-64243961 | None:intergenic |
| TTAACAAGATAGTTCCCTTT+AGG | 0.319585 | 2_2:-64244187 | None:intergenic |
| CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 2_2:-64242659 | None:intergenic |
| TAATTGAAATGTCTCTGTTA+AGG | 0.329455 | 2_2:-64242429 | None:intergenic |
| TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 2_2:+64242750 | Msa0264310:CDS |
| TATTCTTGATTATCATCGTT+GGG | 0.343497 | 2_2:+64241800 | Msa0264310:CDS |
| AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 2_2:+64242763 | Msa0264310:CDS |
| GTCTACCGTGTATCGCATTT+GGG | 0.345633 | 2_2:-64243960 | None:intergenic |
| CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 2_2:-64242852 | None:intergenic |
| TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 2_2:-64243070 | None:intergenic |
| AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 2_2:+64242568 | Msa0264310:CDS |
| AACTCAAACCAATGCCTAAA+GGG | 0.384062 | 2_2:+64244173 | Msa0264310:CDS |
| GTGAATAAGGAAGGTTTCAT+TGG | 0.396105 | 2_2:-64243986 | None:intergenic |
| GAGATGATGTTCTTCGCATT+AGG | 0.406169 | 2_2:-64243089 | None:intergenic |
| ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 2_2:+64243270 | Msa0264310:CDS |
| AAATTCTCTTCTCATGATGT+TGG | 0.451920 | 2_2:+64244386 | Msa0264310:exon |
| AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 2_2:-64242760 | None:intergenic |
| ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 2_2:+64241811 | Msa0264310:CDS |
| AGATAGTTCCCTTTAGGCAT+TGG | 0.454693 | 2_2:-64244181 | None:intergenic |
| AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 2_2:+64242348 | Msa0264310:CDS |
| AATCTTTAAACATACCTTGA+GGG | 0.459378 | 2_2:-64242209 | None:intergenic |
| ATATTCTTGATTATCATCGT+TGG | 0.463067 | 2_2:+64241799 | Msa0264310:CDS |
| CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 2_2:+64242660 | Msa0264310:CDS |
| CAGACATTAGATGATGTTGT+TGG | 0.474147 | 2_2:+64244262 | Msa0264310:CDS |
| AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 2_2:-64243273 | None:intergenic |
| AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 2_2:-64242966 | None:intergenic |
| ATAAGGAAGGTTTCATTGGC+TGG | 0.476766 | 2_2:-64243982 | None:intergenic |
| TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 2_2:+64243467 | Msa0264310:CDS |
| GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 2_2:-64242559 | None:intergenic |
| AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 2_2:+64242687 | Msa0264310:CDS |
| AGTTTGTAGTTGAATGCAAA+GGG | 0.481518 | 2_2:-64244154 | None:intergenic |
| GAAGGCTTTGAAGAAATACT+TGG | 0.482916 | 2_2:-64242817 | None:intergenic |
| AAACTCAAACCAATGCCTAA+AGG | 0.488700 | 2_2:+64244172 | Msa0264310:CDS |
| TGGTTGGATGAATCTTCAAC+AGG | 0.489385 | 2_2:+64244306 | Msa0264310:CDS |
| GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 2_2:+64242358 | Msa0264310:CDS |
| TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 2_2:+64242597 | Msa0264310:CDS |
| TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 2_2:-64243566 | None:intergenic |
| ATTAGTTCAGAGGAATCTAC+AGG | 0.503053 | 2_2:+64241732 | Msa0264310:CDS |
| ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 2_2:+64242626 | Msa0264310:CDS |
| TCTAAAGCTGTGAATAAGGA+AGG | 0.504713 | 2_2:-64243995 | None:intergenic |
| TTGTGGCTTACTCCTTCAGA+AGG | 0.507237 | 2_2:-64242835 | None:intergenic |
| ATTTGTAAATAGGATTGTAC+TGG | 0.509013 | 2_2:+64244514 | Msa0264310:three_prime_UTR |
| AACAAATGAAGAAAATAATA+CGG | 0.513989 | 2_2:+64243320 | Msa0264310:CDS |
| GATGGCAAGACAACAGATCA+AGG | 0.516248 | 2_2:+64242403 | Msa0264310:CDS |
| AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 2_2:-64242645 | None:intergenic |
| CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 2_2:+64241756 | Msa0264310:CDS |
| GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 2_2:+64243426 | Msa0264310:CDS |
| GCACTTCATCAGAAGAAAGA+TGG | 0.526893 | 2_2:+64242385 | Msa0264310:CDS |
| AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 2_2:+64243543 | Msa0264310:CDS |
| AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 2_2:+64242842 | Msa0264310:CDS |
| GATGAATCTTCAACAGGAAG+AGG | 0.528776 | 2_2:+64244312 | Msa0264310:CDS |
| GAAATTGATTATCACTTGAG+TGG | 0.531719 | 2_2:+64241665 | Msa0264310:five_prime_UTR |
| ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 2_2:+64243214 | Msa0264310:CDS |
| ATTTCTTCAAAGCCTTCTGA+AGG | 0.533424 | 2_2:+64242823 | Msa0264310:CDS |
| TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 2_2:+64241812 | Msa0264310:CDS |
| AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 2_2:+64242343 | Msa0264310:CDS |
| AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 2_2:+64241766 | Msa0264310:CDS |
| CTATCTTGTTAAAGAAGTAT+GGG | 0.540514 | 2_2:+64244198 | Msa0264310:CDS |
| TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 2_2:-64242641 | None:intergenic |
| ATCATCTCTTAATGAATCGA+TGG | 0.543352 | 2_2:+64243104 | Msa0264310:CDS |
| GAAGATAAAACATGCACTTG+TGG | 0.545595 | 2_2:+64242903 | Msa0264310:CDS |
| AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 2_2:+64241722 | Msa0264310:CDS |
| TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 2_2:-64243468 | None:intergenic |
| TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 2_2:+64242514 | Msa0264310:CDS |
| TCTAATGTCTGATCTAACTC+TGG | 0.557841 | 2_2:-64244250 | None:intergenic |
| ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 2_2:+64241801 | Msa0264310:CDS |
| CTAAGAGATATAGACATTGG+TGG | 0.569025 | 2_2:+64242517 | Msa0264310:CDS |
| GCACGAGCAAAGAGATCAAG+TGG | 0.575717 | 2_2:+64243154 | Msa0264310:CDS |
| AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 2_2:+64241767 | Msa0264310:CDS |
| AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 2_2:+64243555 | Msa0264310:CDS |
| ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 2_2:+64242985 | Msa0264310:CDS |
| GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 2_2:+64242661 | Msa0264310:CDS |
| GAGTTTGTAGTTGAATGCAA+AGG | 0.582588 | 2_2:-64244155 | None:intergenic |
| GTGTGTAGCACTTGAACTTG+AGG | 0.590237 | 2_2:+64244336 | Msa0264310:CDS |
| ATTTGACGAAAAGAAGTGGT+TGG | 0.594040 | 2_2:+64244290 | Msa0264310:CDS |
| TGGTTATGCAGGACAAGGTG+TGG | 0.594929 | 2_2:+64241637 | None:intergenic |
| GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 2_2:+64243432 | Msa0264310:CDS |
| CATGACTACTAATCTTAGCA+AGG | 0.600526 | 2_2:+64243497 | Msa0264310:CDS |
| CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 2_2:+64242359 | Msa0264310:CDS |
| AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 2_2:+64243427 | Msa0264310:CDS |
| TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 2_2:+64242780 | Msa0264310:CDS |
| AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 2_2:+64243026 | Msa0264310:CDS |
| TACAGATGCAGAATCCCTCA+AGG | 0.647198 | 2_2:+64242195 | Msa0264310:CDS |
| GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 2_2:+64241768 | Msa0264310:CDS |
| ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 2_2:-64243286 | None:intergenic |
| CGTGATTTGACGAAAAGAAG+TGG | 0.655367 | 2_2:+64244286 | Msa0264310:CDS |
| AATCATGGTTATGCAGGACA+AGG | 0.656311 | 2_2:+64241632 | None:intergenic |
| GCAGACCCAAATGCGATACA+CGG | 0.657845 | 2_2:+64243955 | Msa0264310:CDS |
| CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 2_2:+64242852 | Msa0264310:CDS |
| TCTGAAGGAGTAAGCCACAA+AGG | 0.665084 | 2_2:+64242838 | Msa0264310:CDS |
| AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 2_2:+64242662 | Msa0264310:CDS |
| AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 2_2:+64242663 | Msa0264310:CDS |
| AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 2_2:-64243243 | None:intergenic |
| AAATGAAGAAAATAATACGG+TGG | 0.680803 | 2_2:+64243323 | Msa0264310:CDS |
| GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 2_2:+64243500 | Msa0264310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGATAAAAATATATATA+AGG | + | chr2_2:64241983-64242002 | Msa0264310:intron | 10.0% |
| !! | CATGATAAAAATATATATAA+GGG | + | chr2_2:64241984-64242003 | Msa0264310:intron | 10.0% |
| !! | ATGATAAAAATATATATAAG+GGG | + | chr2_2:64241985-64242004 | Msa0264310:intron | 10.0% |
| !!! | ACAAAATTGATTATTTGTTA+TGG | + | chr2_2:64241698-64241717 | Msa0264310:exon | 15.0% |
| !!! | CAAAATTGATTATTTGTTAT+GGG | + | chr2_2:64241699-64241718 | Msa0264310:exon | 15.0% |
| !!! | TTTTAATGATTATAAAGCAA+TGG | - | chr2_2:64241957-64241976 | None:intergenic | 15.0% |
| !!! | TTTAAATAATTCTAAGGTAT+AGG | - | chr2_2:64242081-64242100 | None:intergenic | 15.0% |
| !! | TTCTACTTTAAATAATTCTA+AGG | - | chr2_2:64242087-64242106 | None:intergenic | 15.0% |
| !!! | AGATTCATGATTATATTTTA+TGG | + | chr2_2:64242227-64242246 | Msa0264310:intron | 15.0% |
| !!! | AATTCTTTATTTATTTGTGA+CGG | - | chr2_2:64242256-64242275 | None:intergenic | 15.0% |
| !! | AACAAATGAAGAAAATAATA+CGG | + | chr2_2:64243320-64243339 | Msa0264310:CDS | 15.0% |
| !!! | ATCATTACTAATCTTTTTTT+TGG | + | chr2_2:64243752-64243771 | Msa0264310:intron | 15.0% |
| !!! | ATGTTGATTAATTTGTAAAT+AGG | + | chr2_2:64244504-64244523 | Msa0264310:three_prime_UTR | 15.0% |
| !! | AGTGATTTATCAATCTTTAA+AGG | - | chr2_2:64243387-64243406 | None:intergenic | 20.0% |
| ! | CAAATTCAAGAAGTTAATCA+AGG | + | chr2_2:64241756-64241775 | Msa0264310:CDS | 25.0% |
| ! | ATATTCTTGATTATCATCGT+TGG | + | chr2_2:64241799-64241818 | Msa0264310:CDS | 25.0% |
| ! | TATTCTTGATTATCATCGTT+GGG | + | chr2_2:64241800-64241819 | Msa0264310:CDS | 25.0% |
| ! | ATAAAAGAAGAAACATAGTG+TGG | - | chr2_2:64241886-64241905 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTATCTGCATAT+AGG | - | chr2_2:64242147-64242166 | None:intergenic | 25.0% |
| ! | AATCTTTAAACATACCTTGA+GGG | - | chr2_2:64242212-64242231 | None:intergenic | 25.0% |
| ! | AGAGAAATATCAAATGCTAA+AGG | + | chr2_2:64242343-64242362 | Msa0264310:CDS | 25.0% |
| ! | AATTGAAATGTCTCTGTTAA+GGG | - | chr2_2:64242431-64242450 | None:intergenic | 25.0% |
| ! | TAATTGAAATGTCTCTGTTA+AGG | - | chr2_2:64242432-64242451 | None:intergenic | 25.0% |
| !!! | CAAAAACAATGATGATGTTT+TGG | + | chr2_2:64242456-64242475 | Msa0264310:CDS | 25.0% |
| !! | TTTCTAAGAGATATAGACAT+TGG | + | chr2_2:64242514-64242533 | Msa0264310:CDS | 25.0% |
| !! | AAATTGCTTCTAGAAAACAT+AGG | - | chr2_2:64243246-64243265 | None:intergenic | 25.0% |
| ! | AAATGAAGAAAATAATACGG+TGG | + | chr2_2:64243323-64243342 | Msa0264310:CDS | 25.0% |
| !!! | ATCACTTGAACATTTTAAAG+AGG | + | chr2_2:64243401-64243420 | Msa0264310:CDS | 25.0% |
| ! | TTTGGCTATATATATATACC+AGG | + | chr2_2:64243770-64243789 | Msa0264310:intron | 25.0% |
| ! | CTATATATATATACCAGGAA+AGG | + | chr2_2:64243775-64243794 | Msa0264310:intron | 25.0% |
| !! | GTCTTTGACATATTTGAAAT+TGG | - | chr2_2:64243903-64243922 | None:intergenic | 25.0% |
| !! | CAAAGACATTCTTGAATTTT+CGG | + | chr2_2:64243916-64243935 | Msa0264310:CDS | 25.0% |
| !! | AAAGACATTCTTGAATTTTC+GGG | + | chr2_2:64243917-64243936 | Msa0264310:CDS | 25.0% |
| ! | ACTATCTTGTTAAAGAAGTA+TGG | + | chr2_2:64244197-64244216 | Msa0264310:CDS | 25.0% |
| !! | CTATCTTGTTAAAGAAGTAT+GGG | + | chr2_2:64244198-64244217 | Msa0264310:CDS | 25.0% |
| ! | ATTTGTAAATAGGATTGTAC+TGG | + | chr2_2:64244514-64244533 | Msa0264310:three_prime_UTR | 25.0% |
| GAAATTGATTATCACTTGAG+TGG | + | chr2_2:64241665-64241684 | Msa0264310:five_prime_UTR | 30.0% | |
| ! | AAAACACTTGATTAGTTCAG+AGG | + | chr2_2:64241722-64241741 | Msa0264310:CDS | 30.0% |
| AAGTTAATCAAGGATGTATG+TGG | + | chr2_2:64241766-64241785 | Msa0264310:CDS | 30.0% | |
| AGTTAATCAAGGATGTATGT+GGG | + | chr2_2:64241767-64241786 | Msa0264310:CDS | 30.0% | |
| ATTCTTGATTATCATCGTTG+GGG | + | chr2_2:64241801-64241820 | Msa0264310:CDS | 30.0% | |
| CAGCTGTTTATATACACAAA+AGG | - | chr2_2:64242036-64242055 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGGTCTTGCAAAA+TGG | - | chr2_2:64242170-64242189 | None:intergenic | 30.0% |
| ! | CATCTGTAACAACATTTTGT+TGG | - | chr2_2:64242183-64242202 | None:intergenic | 30.0% |
| GAATCTTTAAACATACCTTG+AGG | - | chr2_2:64242213-64242232 | None:intergenic | 30.0% | |
| AATATCAAATGCTAAAGGTC+AGG | + | chr2_2:64242348-64242367 | Msa0264310:CDS | 30.0% | |
| !! | AAACAATGATGATGTTTTGG+AGG | + | chr2_2:64242459-64242478 | Msa0264310:CDS | 30.0% |
| AAAGCGAAATTGACAAAATC+AGG | + | chr2_2:64242568-64242587 | Msa0264310:CDS | 30.0% | |
| !!! | AAACTTGATCCAAGCTTTTT+TGG | - | chr2_2:64242715-64242734 | None:intergenic | 30.0% |
| ATCATCTCTTAATGAATCGA+TGG | + | chr2_2:64243104-64243123 | Msa0264310:CDS | 30.0% | |
| ATGATAAGATTCACAAGAGT+AGG | + | chr2_2:64243214-64243233 | Msa0264310:CDS | 30.0% | |
| ATCATGTAGAATGAATCCTA+AGG | - | chr2_2:64243289-64243308 | None:intergenic | 30.0% | |
| !! | AAGTTGATGAAACAGTTGAA+GGG | + | chr2_2:64243427-64243446 | Msa0264310:CDS | 30.0% |
| !! | TAAATTTGTTACCTTCTGCT+TGG | - | chr2_2:64243569-64243588 | None:intergenic | 30.0% |
| ACTAACGTAACATTTCTTTG+AGG | + | chr2_2:64243605-64243624 | Msa0264310:intron | 30.0% | |
| !! | TTCTTCTAAAGCTGTGAATA+AGG | - | chr2_2:64244002-64244021 | None:intergenic | 30.0% |
| !! | TCACCAACTTCTTTTTAACT+TGG | + | chr2_2:64244078-64244097 | Msa0264310:CDS | 30.0% |
| TGACCAAGTTAAAAAGAAGT+TGG | - | chr2_2:64244084-64244103 | None:intergenic | 30.0% | |
| !!! | AAGGGTTTTGGAAAATAAGT+TGG | - | chr2_2:64244139-64244158 | None:intergenic | 30.0% |
| AGTTTGTAGTTGAATGCAAA+GGG | - | chr2_2:64244157-64244176 | None:intergenic | 30.0% | |
| TTAACAAGATAGTTCCCTTT+AGG | - | chr2_2:64244190-64244209 | None:intergenic | 30.0% | |
| AAATTCTCTTCTCATGATGT+TGG | + | chr2_2:64244386-64244405 | Msa0264310:exon | 30.0% | |
| !!! | ATGATTTTTTGAAGCAGCAT+AGG | + | chr2_2:64244475-64244494 | Msa0264310:three_prime_UTR | 30.0% |
| ATTAGTTCAGAGGAATCTAC+AGG | + | chr2_2:64241732-64241751 | Msa0264310:CDS | 35.0% | |
| GTTAATCAAGGATGTATGTG+GGG | + | chr2_2:64241768-64241787 | Msa0264310:CDS | 35.0% | |
| GGTATGAAATTGCTTACATC+TGG | - | chr2_2:64241865-64241884 | None:intergenic | 35.0% | |
| ACAAAAGGTTCTTGATGAGA+TGG | - | chr2_2:64242021-64242040 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGAGGTAATTAGTG+TGG | + | chr2_2:64242471-64242490 | Msa0264310:CDS | 35.0% |
| CTAAGAGATATAGACATTGG+TGG | + | chr2_2:64242517-64242536 | Msa0264310:CDS | 35.0% | |
| ! | CTAATGTTTTTCACCTTGGA+AGG | - | chr2_2:64242613-64242632 | None:intergenic | 35.0% |
| ! | AGAGCTAATGTTTTTCACCT+TGG | - | chr2_2:64242617-64242636 | None:intergenic | 35.0% |
| ! | AAATTTCGGTTTGCTTAGAC+CGG | - | chr2_2:64242648-64242667 | None:intergenic | 35.0% |
| !! | GAAGGCTTTGAAGAAATACT+TGG | - | chr2_2:64242820-64242839 | None:intergenic | 35.0% |
| ATTTCTTCAAAGCCTTCTGA+AGG | + | chr2_2:64242823-64242842 | Msa0264310:CDS | 35.0% | |
| GAAGATAAAACATGCACTTG+TGG | + | chr2_2:64242903-64242922 | Msa0264310:CDS | 35.0% | |
| CTTGTGGAACTCAAAAAAAG+TGG | + | chr2_2:64242919-64242938 | Msa0264310:CDS | 35.0% | |
| AGATCTCTTTCTCGTTATTG+TGG | - | chr2_2:64242969-64242988 | None:intergenic | 35.0% | |
| ATCTCACAAAGCTTAGATGT+TGG | + | chr2_2:64242985-64243004 | Msa0264310:CDS | 35.0% | |
| AATCCTAAGGACTCAAGATT+AGG | - | chr2_2:64243276-64243295 | None:intergenic | 35.0% | |
| !! | GAAGTTGATGAAACAGTTGA+AGG | + | chr2_2:64243426-64243445 | Msa0264310:CDS | 35.0% |
| CATGACTACTAATCTTAGCA+AGG | + | chr2_2:64243497-64243516 | Msa0264310:CDS | 35.0% | |
| TTGTCTTGACAGCTAATTTC+AGG | - | chr2_2:64243537-64243556 | None:intergenic | 35.0% | |
| AGCTGTCAAGACAATACAAT+CGG | + | chr2_2:64243543-64243562 | Msa0264310:CDS | 35.0% | |
| !!! | TCTTGAATTTTCGGGTTTCA+TGG | + | chr2_2:64243925-64243944 | Msa0264310:CDS | 35.0% |
| !!! | CTTGAATTTTCGGGTTTCAT+GGG | + | chr2_2:64243926-64243945 | Msa0264310:CDS | 35.0% |
| GTGAATAAGGAAGGTTTCAT+TGG | - | chr2_2:64243989-64244008 | None:intergenic | 35.0% | |
| ! | TCTAAAGCTGTGAATAAGGA+AGG | - | chr2_2:64243998-64244017 | None:intergenic | 35.0% |
| ! | TAGTTGAATGCAAAGGGTTT+TGG | - | chr2_2:64244151-64244170 | None:intergenic | 35.0% |
| GAGTTTGTAGTTGAATGCAA+AGG | - | chr2_2:64244158-64244177 | None:intergenic | 35.0% | |
| AAACTCAAACCAATGCCTAA+AGG | + | chr2_2:64244172-64244191 | Msa0264310:CDS | 35.0% | |
| AACTCAAACCAATGCCTAAA+GGG | + | chr2_2:64244173-64244192 | Msa0264310:CDS | 35.0% | |
| TCTAATGTCTGATCTAACTC+TGG | - | chr2_2:64244253-64244272 | None:intergenic | 35.0% | |
| CAGACATTAGATGATGTTGT+TGG | + | chr2_2:64244262-64244281 | Msa0264310:CDS | 35.0% | |
| ATTTGACGAAAAGAAGTGGT+TGG | + | chr2_2:64244290-64244309 | Msa0264310:CDS | 35.0% | |
| GCACTTCATCAGAAGAAAGA+TGG | + | chr2_2:64242385-64242404 | Msa0264310:CDS | 40.0% | |
| ! | GTCAATTTCGCTTTGTTGTG+AGG | - | chr2_2:64242562-64242581 | None:intergenic | 40.0% |
| !! | ACATTAGCTCTAGTACCTTC+CGG | + | chr2_2:64242626-64242645 | Msa0264310:CDS | 40.0% |
| GGTCTAAGCAAACCGAAATT+TGG | + | chr2_2:64242647-64242666 | Msa0264310:CDS | 40.0% | |
| !! | CTTGGGAAAGTGCCAAATTT+CGG | - | chr2_2:64242662-64242681 | None:intergenic | 40.0% |
| GAAATTTGGCACTTTCCCAA+GGG | + | chr2_2:64242661-64242680 | Msa0264310:CDS | 40.0% | |
| AAATTTGGCACTTTCCCAAG+GGG | + | chr2_2:64242662-64242681 | Msa0264310:CDS | 40.0% | |
| TTATGAAACGCCGAAGCTTT+CGG | + | chr2_2:64242750-64242769 | Msa0264310:CDS | 40.0% | |
| TCTTGGAATCGATAGTGTCA+TGG | + | chr2_2:64242780-64242799 | Msa0264310:CDS | 40.0% | |
| AAAGAGTAAGAGCTTGAGTG+AGG | + | chr2_2:64243026-64243045 | Msa0264310:CDS | 40.0% | |
| !! | TAGGCTAGCTTCATGTTTGT+TGG | - | chr2_2:64243073-64243092 | None:intergenic | 40.0% |
| GAGATGATGTTCTTCGCATT+AGG | - | chr2_2:64243092-64243111 | None:intergenic | 40.0% | |
| ATGCCTAATCTTGAGTCCTT+AGG | + | chr2_2:64243270-64243289 | Msa0264310:CDS | 40.0% | |
| ! | TCCTAGTTCTTTATCTGCTG+TGG | + | chr2_2:64243467-64243486 | Msa0264310:CDS | 40.0% |
| TCCACAGCAGATAAAGAACT+AGG | - | chr2_2:64243471-64243490 | None:intergenic | 40.0% | |
| GACTACTAATCTTAGCAAGG+AGG | + | chr2_2:64243500-64243519 | Msa0264310:CDS | 40.0% | |
| ATAAGGAAGGTTTCATTGGC+TGG | - | chr2_2:64243985-64244004 | None:intergenic | 40.0% | |
| AGATAGTTCCCTTTAGGCAT+TGG | - | chr2_2:64244184-64244203 | None:intergenic | 40.0% | |
| CGTGATTTGACGAAAAGAAG+TGG | + | chr2_2:64244286-64244305 | Msa0264310:CDS | 40.0% | |
| TGGTTGGATGAATCTTCAAC+AGG | + | chr2_2:64244306-64244325 | Msa0264310:CDS | 40.0% | |
| GATGAATCTTCAACAGGAAG+AGG | + | chr2_2:64244312-64244331 | Msa0264310:CDS | 40.0% | |
| ! | ATCATCGTTGGGGTGTCAAA+AGG | + | chr2_2:64241811-64241830 | Msa0264310:CDS | 45.0% |
| ! | TCATCGTTGGGGTGTCAAAA+GGG | + | chr2_2:64241812-64241831 | Msa0264310:CDS | 45.0% |
| TACAGATGCAGAATCCCTCA+AGG | + | chr2_2:64242195-64242214 | Msa0264310:CDS | 45.0% | |
| CTAAAGGTCAGGCTAGTAGT+GGG | + | chr2_2:64242359-64242378 | Msa0264310:CDS | 45.0% | |
| GATGGCAAGACAACAGATCA+AGG | + | chr2_2:64242403-64242422 | Msa0264310:CDS | 45.0% | |
| CGAAATTTGGCACTTTCCCA+AGG | + | chr2_2:64242660-64242679 | Msa0264310:CDS | 45.0% | |
| AATTTGGCACTTTCCCAAGG+GGG | + | chr2_2:64242663-64242682 | Msa0264310:CDS | 45.0% | |
| AAAGTTGCTAGCTGGAACTC+AGG | + | chr2_2:64242687-64242706 | Msa0264310:CDS | 45.0% | |
| ACTCAGGCTCCAAAAAAGCT+TGG | + | chr2_2:64242703-64242722 | Msa0264310:CDS | 45.0% | |
| TTGTGGCTTACTCCTTCAGA+AGG | - | chr2_2:64242838-64242857 | None:intergenic | 45.0% | |
| TCTGAAGGAGTAAGCCACAA+AGG | + | chr2_2:64242838-64242857 | Msa0264310:CDS | 45.0% | |
| AAGGAGTAAGCCACAAAGGA+TGG | + | chr2_2:64242842-64242861 | Msa0264310:CDS | 45.0% | |
| CCACTTGATTCCATCCTTTG+TGG | - | chr2_2:64242855-64242874 | None:intergenic | 45.0% | |
| CCACAAAGGATGGAATCAAG+TGG | + | chr2_2:64242852-64242871 | Msa0264310:CDS | 45.0% | |
| GATGAAACAGTTGAAGGGAG+TGG | + | chr2_2:64243432-64243451 | Msa0264310:CDS | 45.0% | |
| AATACAATCGGCCAAGCAGA+AGG | + | chr2_2:64243555-64243574 | Msa0264310:CDS | 45.0% | |
| GTCTACCGTGTATCGCATTT+GGG | - | chr2_2:64243963-64243982 | None:intergenic | 45.0% | |
| GTGTGTAGCACTTGAACTTG+AGG | + | chr2_2:64244336-64244355 | Msa0264310:CDS | 45.0% | |
| !! | AATATATAAATATAAATATC+AGG | + | chr2_2:64242309-64242328 | Msa0264310:intron | 5.0% |
| GCTAAAGGTCAGGCTAGTAG+TGG | + | chr2_2:64242358-64242377 | Msa0264310:CDS | 50.0% | |
| ! | GTTTTTCACCTTGGAAGGCG+CGG | - | chr2_2:64242608-64242627 | None:intergenic | 50.0% |
| ! | TTCGGTTTGCTTAGACCGGA+AGG | - | chr2_2:64242644-64242663 | None:intergenic | 50.0% |
| ! | GCTAGCAACTTTTCCCCCTT+GGG | - | chr2_2:64242679-64242698 | None:intergenic | 50.0% |
| ! | AGCTAGCAACTTTTCCCCCT+TGG | - | chr2_2:64242680-64242699 | None:intergenic | 50.0% |
| AAGGGGGAAAAGTTGCTAGC+TGG | + | chr2_2:64242679-64242698 | Msa0264310:CDS | 50.0% | |
| GCACGAGCAAAGAGATCAAG+TGG | + | chr2_2:64243154-64243173 | Msa0264310:CDS | 50.0% | |
| CGCGTATTCGATTCCTTTCC+TGG | - | chr2_2:64243791-64243810 | None:intergenic | 50.0% | |
| GCAGACCCAAATGCGATACA+CGG | + | chr2_2:64243955-64243974 | Msa0264310:CDS | 50.0% | |
| GGTCTACCGTGTATCGCATT+TGG | - | chr2_2:64243964-64243983 | None:intergenic | 50.0% | |
| TCCTTTAACCGCGCCTTCCA+AGG | + | chr2_2:64242597-64242616 | Msa0264310:CDS | 55.0% | |
| ! | ACCTTGGAAGGCGCGGTTAA+AGG | - | chr2_2:64242601-64242620 | None:intergenic | 55.0% |
| AGATCGCTCGCCGAAAGCTT+CGG | - | chr2_2:64242763-64242782 | None:intergenic | 55.0% | |
| AAGCTTTCGGCGAGCGATCT+TGG | + | chr2_2:64242763-64242782 | Msa0264310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64241647 | 64244567 | 64241647 | ID=Msa0264310;Name=Msa0264310 |
| chr2_2 | mRNA | 64241647 | 64244567 | 64241647 | ID=Msa0264310-mRNA-1;Parent=Msa0264310;Name=Msa0264310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=70|1|1|1|1|1|4|165|689 |
| chr2_2 | exon | 64241647 | 64241867 | 64241647 | ID=Msa0264310-mRNA-1:exon:19984;Parent=Msa0264310-mRNA-1 |
| chr2_2 | exon | 64242155 | 64242216 | 64242155 | ID=Msa0264310-mRNA-1:exon:19985;Parent=Msa0264310-mRNA-1 |
| chr2_2 | exon | 64242331 | 64243576 | 64242331 | ID=Msa0264310-mRNA-1:exon:19986;Parent=Msa0264310-mRNA-1 |
| chr2_2 | exon | 64243792 | 64244567 | 64243792 | ID=Msa0264310-mRNA-1:exon:19987;Parent=Msa0264310-mRNA-1 |
| chr2_2 | five_prime_UTR | 64241647 | 64241716 | 64241647 | ID=Msa0264310-mRNA-1:five_prime_utr;Parent=Msa0264310-mRNA-1 |
| chr2_2 | CDS | 64241717 | 64241867 | 64241717 | ID=Msa0264310-mRNA-1:cds;Parent=Msa0264310-mRNA-1 |
| chr2_2 | CDS | 64242155 | 64242216 | 64242155 | ID=Msa0264310-mRNA-1:cds;Parent=Msa0264310-mRNA-1 |
| chr2_2 | CDS | 64242331 | 64243576 | 64242331 | ID=Msa0264310-mRNA-1:cds;Parent=Msa0264310-mRNA-1 |
| chr2_2 | CDS | 64243792 | 64244402 | 64243792 | ID=Msa0264310-mRNA-1:cds;Parent=Msa0264310-mRNA-1 |
| chr2_2 | three_prime_UTR | 64244403 | 64244567 | 64244403 | ID=Msa0264310-mRNA-1:three_prime_utr;Parent=Msa0264310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
