AlfalfaGEDB | Msa1329510

M. sativa cultivar zhongmu-4 / Msa1329510

KEGG: K07893
GO: GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329510	XP_013457538.1	99.517	207	0	1	1	207	1	206	1.88e-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329510	sp\|O80501\|RAH1B_ARATH	90.909	209	16	2	1	207	1	208	5.53e-138	387

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329510	A0A072UNZ7	99.517	207	0	1	1	207	1	206	8.97e-149	421

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0048180	Msa1329510	0.808685	2.743305e-50	-8.615850e-47
Msa0103240	Msa1329510	0.810874	9.279405e-51	-8.615850e-47
Msa0123010	Msa1329510	0.800982	1.116249e-48	-8.615850e-47
Msa0174770	Msa1329510	0.805212	1.488370e-49	-8.615850e-47
Msa0218830	Msa1329510	0.804083	2.561404e-49	-8.615850e-47
Msa0224560	Msa1329510	0.830004	3.749326e-55	-8.615850e-47
Msa0304590	Msa1329510	0.800241	1.580417e-48	-8.615850e-47
Msa0304660	Msa1329510	0.800701	1.273817e-48	-8.615850e-47
Msa0331700	Msa1329510	0.802327	5.913437e-49	-8.615850e-47
Msa0348830	Msa1329510	0.830700	2.533576e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329510	MtrunA17_Chr4g0055081	99.517	207	0	1	1	207	1	206	1.73e-152	421
Msa1329510	MtrunA17_Chr5g0400131	90.865	208	17	2	1	207	1	207	8.95e-139	386
Msa1329510	MtrunA17_Chr8g0382221	84.135	208	31	2	1	207	1	207	1.27e-128	360
Msa1329510	MtrunA17_Chr3g0123971	84.615	208	29	3	1	207	1	206	1.35e-126	355
Msa1329510	MtrunA17_Chr1g0199331	46.386	166	85	3	9	172	31	194	1.02e-46	152
Msa1329510	MtrunA17_Chr8g0349711	43.210	162	91	1	10	171	7	167	2.29e-44	147
Msa1329510	MtrunA17_Chr5g0433561	41.358	162	94	1	11	172	12	172	3.25e-44	146
Msa1329510	MtrunA17_Chr3g0109721	41.358	162	94	1	11	172	12	172	4.08e-44	146
Msa1329510	MtrunA17_Chr8g0390561	42.857	161	91	1	11	171	11	170	1.79e-43	144
Msa1329510	MtrunA17_Chr2g0276931	43.210	162	91	1	10	171	10	170	2.89e-43	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329510	AT2G44610.1	90.909	209	16	2	1	207	1	208	5.62e-139	387
Msa1329510	AT5G10260.1	85.096	208	29	2	1	207	1	207	4.02e-128	359
Msa1329510	AT2G22290.1	83.173	208	33	2	1	207	1	207	3.73e-124	349
Msa1329510	AT4G39890.1	79.082	196	40	1	1	195	1	196	5.37e-111	317
Msa1329510	AT5G64990.1	74.000	200	49	2	10	207	8	206	7.33e-103	295
Msa1329510	AT5G64990.2	71.498	207	49	3	10	207	8	213	3.89e-100	289
Msa1329510	AT3G54840.1	46.988	166	84	3	9	172	33	196	1.63e-47	155
Msa1329510	AT3G54840.3	47.239	163	82	3	12	172	2	162	1.01e-46	152
Msa1329510	AT5G45130.1	41.975	162	93	1	11	172	12	172	8.30e-46	150
Msa1329510	AT3G54840.2	47.468	158	79	3	9	164	33	188	2.62e-45	149

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Find 55 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCTGCTGCTTTGCC+TGG	0.361096	8_4:-48152275	Msa1329510:CDS
AAACTGACCTTGTGGAAAAG+AGG	0.510063	8_4:-48153957	Msa1329510:intron
AACCACAAAACAAGAAGACA+TGG	0.648075	8_4:-48152237	Msa1329510:CDS
AAGAGGTGCGCAGTAGTGAG+AGG	0.597759	8_4:-48154014	Msa1329510:CDS
AATTCGACTAATTATCAAAT+AGG	0.328522	8_4:-48151865	Msa1329510:three_prime_UTR
ACATGGTCGATGTGAACCTG+AGG	0.670721	8_4:-48152220	Msa1329510:CDS
AGAGGTGCGCAGTAGTGAGA+GGG	0.572109	8_4:-48154013	Msa1329510:CDS
AGCTCTCGCAAAGTACAAAT+TGG	0.308894	8_4:-48157629	Msa1329510:CDS
AGGCAAGTCTCCACGGAGGA+AGG	0.492452	8_4:-48152729	Msa1329510:CDS
AGTATGATTGTATCTCTAAA+TGG	0.308860	8_4:+48151896	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTCGATAACACTTATC+AGG	-	chr8_4:48152081-48152100	Msa1329510:three_prime_UTR	30.0%
AAATGAGAATGGATCTGAAA+TGG	+	chr8_4:48152109-48152128	None:intergenic	30.0%
TATAGCTCAAAATCACAGAT+TGG	+	chr8_4:48152470-48152489	None:intergenic	30.0%
AGTTTGGATAAGTATGTGTT+GGG	-	chr8_4:48152630-48152649	Msa1329510:intron	30.0%
CAATGTACATTCTAATACAC+AGG	+	chr8_4:48153132-48153151	None:intergenic	30.0%
ATTGACATTTGAGAGAGTTA+GGG	-	chr8_4:48153148-48153167	Msa1329510:intron	30.0%
ATCCTATAACTCTATGGTTA+GGG	+	chr8_4:48153406-48153425	None:intergenic	30.0%
AATCCTATAACTCTATGGTT+AGG	+	chr8_4:48153407-48153426	None:intergenic	30.0%
ATAAACATTAGAAGGAAGGA+AGG	+	chr8_4:48153478-48153497	None:intergenic	30.0%
TTCCTTCCTTCTAATGTTTA+TGG	-	chr8_4:48153477-48153496	Msa1329510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	48151821	48157830	48151821	ID=Msa1329510;Name=Msa1329510
chr8_4	mRNA	48151821	48157830	48151821	ID=Msa1329510-mRNA-1;Parent=Msa1329510;Name=Msa1329510-mRNA-1;_AED=0.16;_eAED=0.16;_QI=165\|1\|1\|1\|0.8\|0.83\|6\|348\|207
chr8_4	exon	48151821	48152309	48151821	ID=Msa1329510-mRNA-1:exon:13832;Parent=Msa1329510-mRNA-1
chr8_4	exon	48152659	48152749	48152659	ID=Msa1329510-mRNA-1:exon:13831;Parent=Msa1329510-mRNA-1
chr8_4	exon	48153958	48154072	48153958	ID=Msa1329510-mRNA-1:exon:13830;Parent=Msa1329510-mRNA-1
chr8_4	exon	48154782	48154870	48154782	ID=Msa1329510-mRNA-1:exon:13829;Parent=Msa1329510-mRNA-1
chr8_4	exon	48155954	48156024	48155954	ID=Msa1329510-mRNA-1:exon:13828;Parent=Msa1329510-mRNA-1
chr8_4	exon	48157549	48157830	48157549	ID=Msa1329510-mRNA-1:exon:13827;Parent=Msa1329510-mRNA-1
chr8_4	five_prime_UTR	48157666	48157830	48157666	ID=Msa1329510-mRNA-1:five_prime_utr;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48157549	48157665	48157549	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48155954	48156024	48155954	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48154782	48154870	48154782	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48153958	48154072	48153958	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48152659	48152749	48152659	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	CDS	48152169	48152309	48152169	ID=Msa1329510-mRNA-1:cds;Parent=Msa1329510-mRNA-1
chr8_4	three_prime_UTR	48151821	48152168	48151821	ID=Msa1329510-mRNA-1:three_prime_utr;Parent=Msa1329510-mRNA-1

Gene Sequence

>Msa1329510

ATGGCGCCAGTTTCAGCTCTCGCAAAGTACAAATTGGTTTTTCTCGGCGATCAATCCGTCGGTAAAACCAGCATCATCACTCGCTTCATGTACGACAAATTCGATAACACTTATCAGGCTACAATCGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTATGGGATACAGCTGGACAGGAGAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATCGTTTATGATGTTGCAAGTCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTAGTGAGAGGGGAAGTGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGACCTTGTGGAAAAGAGGCAAGTCTCCACGGAGGAAGGGGAAGCAAAGTCTCGTGAGCTAAACGTTATGTTTATTGAAGCTAGTGCCAAAGCCGGCTTCAATATAAAGGCCCTGTTCCGAAAAATTGCTGCTGCTTTGCCTGGAATGGAAACACTATCAACCACAAAACAAGAAGACATGGTCGATGTGAACCTGAGGTCTTCTACCAGCCATGACTCTCAACCTCAGTCTGGCGGATGTTCTTGCTAA

Protein sequence

>Msa1329510

MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSSERGSDVIVVLVGNKTDLVEKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSTSHDSQPQSGGCSC*