Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236240 | XP_003627492.2 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236240 | sp|Q8GYY5|RGAP3_ARATH | 52.964 | 506 | 171 | 12 | 1 | 498 | 1 | 447 | 2.71e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236240 | G7L9Z1 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1236240 | 0.825295 | 5.066049e-54 | -8.615850e-47 |
| Msa0014570 | Msa1236240 | 0.819991 | 8.682494e-53 | -8.615850e-47 |
| Msa0025330 | Msa1236240 | 0.835649 | 1.483857e-56 | -8.615850e-47 |
| Msa0039570 | Msa1236240 | 0.806294 | 8.819466e-50 | -8.615850e-47 |
| Msa0049790 | Msa1236240 | 0.816159 | 6.383444e-52 | -8.615850e-47 |
| Msa0056450 | Msa1236240 | 0.823125 | 1.638683e-53 | -8.615850e-47 |
| Msa0061340 | Msa1236240 | 0.841506 | 4.558722e-58 | -8.615850e-47 |
| Msa0072900 | Msa1236240 | 0.829061 | 6.355147e-55 | -8.615850e-47 |
| Msa0074240 | Msa1236240 | 0.812754 | 3.616716e-51 | -8.615850e-47 |
| Msa0081520 | Msa1236240 | 0.805555 | 1.261480e-49 | -8.615850e-47 |
| Msa0094850 | Msa1236240 | 0.814690 | 1.354877e-51 | -8.615850e-47 |
| Msa0108390 | Msa1236240 | 0.815339 | 9.727451e-52 | -8.615850e-47 |
| Msa0626450 | Msa1236240 | 0.809246 | 2.079951e-50 | -8.615850e-47 |
| Msa0626490 | Msa1236240 | 0.808485 | 3.026278e-50 | -8.615850e-47 |
| Msa0626510 | Msa1236240 | 0.824269 | 8.845391e-54 | -8.615850e-47 |
| Msa0637900 | Msa1236240 | 0.801087 | 1.062140e-48 | -8.615850e-47 |
| Msa0661320 | Msa1236240 | 0.818666 | 1.740577e-52 | -8.615850e-47 |
| Msa0664600 | Msa1236240 | 0.813238 | 2.832422e-51 | -8.615850e-47 |
| Msa0664910 | Msa1236240 | 0.829512 | 4.939582e-55 | -8.615850e-47 |
| Msa0691050 | Msa1236240 | 0.830202 | 3.354070e-55 | -8.615850e-47 |
| Msa0723990 | Msa1236240 | 0.816014 | 6.879959e-52 | -8.615850e-47 |
| Msa0725760 | Msa1236240 | 0.817666 | 2.929544e-52 | -8.615850e-47 |
| Msa0725780 | Msa1236240 | 0.827987 | 1.154572e-54 | -8.615850e-47 |
| Msa0731940 | Msa1236240 | 0.809301 | 2.024483e-50 | -8.615850e-47 |
| Msa0733390 | Msa1236240 | 0.801318 | 9.526196e-49 | -8.615850e-47 |
| Msa0736600 | Msa1236240 | 0.826721 | 2.322061e-54 | -8.615850e-47 |
| Msa0737570 | Msa1236240 | 0.835730 | 1.415205e-56 | -8.615850e-47 |
| Msa0751260 | Msa1236240 | 0.801138 | 1.037117e-48 | -8.615850e-47 |
| Msa0766360 | Msa1236240 | 0.840047 | 1.099932e-57 | -8.615850e-47 |
| Msa0778590 | Msa1236240 | 0.803919 | 2.770346e-49 | -8.615850e-47 |
| Msa0806300 | Msa1236240 | 0.812412 | 4.295001e-51 | -8.615850e-47 |
| Msa0815960 | Msa1236240 | 0.818939 | 1.508349e-52 | -8.615850e-47 |
| Msa0833520 | Msa1236240 | 0.810317 | 1.223961e-50 | -8.615850e-47 |
| Msa0121090 | Msa1236240 | 0.830761 | 2.448192e-55 | -8.615850e-47 |
| Msa0131330 | Msa1236240 | 0.806164 | 9.396968e-50 | -8.615850e-47 |
| Msa0133720 | Msa1236240 | 0.812085 | 5.063075e-51 | -8.615850e-47 |
| Msa0133820 | Msa1236240 | 0.810438 | 1.152644e-50 | -8.615850e-47 |
| Msa0144360 | Msa1236240 | 0.817733 | 2.828687e-52 | -8.615850e-47 |
| Msa0146740 | Msa1236240 | 0.807877 | 4.078570e-50 | -8.615850e-47 |
| Msa0152400 | Msa1236240 | 0.832471 | 9.274338e-56 | -8.615850e-47 |
| Msa0160130 | Msa1236240 | 0.834850 | 2.361706e-56 | -8.615850e-47 |
| Msa0173890 | Msa1236240 | 0.816848 | 4.474791e-52 | -8.615850e-47 |
| Msa0181230 | Msa1236240 | 0.828770 | 7.472392e-55 | -8.615850e-47 |
| Msa0188150 | Msa1236240 | 0.816644 | 4.971961e-52 | -8.615850e-47 |
| Msa0191890 | Msa1236240 | 0.833582 | 4.908667e-56 | -8.615850e-47 |
| Msa0212040 | Msa1236240 | 0.801155 | 1.028890e-48 | -8.615850e-47 |
| Msa0212990 | Msa1236240 | 0.843306 | 1.519426e-58 | -8.615850e-47 |
| Msa0218810 | Msa1236240 | 0.800286 | 1.547577e-48 | -8.615850e-47 |
| Msa0220740 | Msa1236240 | 0.801275 | 9.723361e-49 | -8.615850e-47 |
| Msa0221000 | Msa1236240 | 0.812540 | 4.026727e-51 | -8.615850e-47 |
| Msa0225320 | Msa1236240 | 0.803957 | 2.720804e-49 | -8.615850e-47 |
| Msa0230370 | Msa1236240 | 0.802831 | 4.655859e-49 | -8.615850e-47 |
| Msa1231550 | Msa1236240 | 0.812811 | 3.512673e-51 | -8.615850e-47 |
| Msa1236240 | Msa1269890 | 0.816342 | 5.809241e-52 | -8.615850e-47 |
| Msa1236240 | Msa1276660 | 0.839210 | 1.815472e-57 | -8.615850e-47 |
| Msa1236240 | Msa1277490 | 0.959558 | 1.419113e-117 | -8.615850e-47 |
| Msa1236240 | Msa1297290 | 0.811907 | 5.535156e-51 | -8.615850e-47 |
| Msa1236240 | Msa1298370 | 0.823728 | 1.184611e-53 | -8.615850e-47 |
| Msa1236240 | Msa1313150 | 0.820404 | 6.983789e-53 | -8.615850e-47 |
| Msa1236240 | Msa1330420 | 0.811835 | 5.738978e-51 | -8.615850e-47 |
| Msa1236240 | Msa1331590 | 0.811572 | 6.545895e-51 | -8.615850e-47 |
| Msa1236240 | Msa1332000 | 0.804998 | 1.650202e-49 | -8.615850e-47 |
| Msa1236240 | Msa1348090 | 0.839465 | 1.558807e-57 | -8.615850e-47 |
| Msa1236240 | Msa1353470 | 0.812203 | 4.771920e-51 | -8.615850e-47 |
| Msa1236240 | Msa1364470 | -0.802898 | 4.508880e-49 | -8.615850e-47 |
| Msa1236240 | Msa1368430 | 0.807146 | 5.829435e-50 | -8.615850e-47 |
| Msa1236240 | Msa1383230 | 0.810434 | 1.155082e-50 | -8.615850e-47 |
| Msa1236240 | Msa1385000 | 0.812224 | 4.719944e-51 | -8.615850e-47 |
| Msa1236240 | Msa1401270 | 0.834177 | 3.485399e-56 | -8.615850e-47 |
| Msa1236240 | Msa1408620 | -0.845224 | 4.639333e-59 | -8.615850e-47 |
| Msa1236240 | Msa1409870 | 0.810129 | 1.343694e-50 | -8.615850e-47 |
| Msa1236240 | Msa1410210 | 0.816424 | 5.570910e-52 | -8.615850e-47 |
| Msa1236240 | Msa1423350 | 0.801346 | 9.401578e-49 | -8.615850e-47 |
| Msa1236240 | Msa1423880 | 0.821188 | 4.610245e-53 | -8.615850e-47 |
| Msa1236240 | Msa1440960 | 0.804407 | 2.192718e-49 | -8.615850e-47 |
| Msa1236240 | Msa1445190 | 0.810658 | 1.033413e-50 | -8.615850e-47 |
| Msa1236240 | Msa1448640 | 0.802887 | 4.533258e-49 | -8.615850e-47 |
| Msa0378720 | Msa1236240 | 0.815641 | 8.329124e-52 | -8.615850e-47 |
| Msa0381290 | Msa1236240 | 0.800628 | 1.318274e-48 | -8.615850e-47 |
| Msa0381610 | Msa1236240 | -0.802056 | 6.723529e-49 | -8.615850e-47 |
| Msa0388960 | Msa1236240 | 0.822509 | 2.279911e-53 | -8.615850e-47 |
| Msa0392510 | Msa1236240 | 0.804408 | 2.191214e-49 | -8.615850e-47 |
| Msa0393440 | Msa1236240 | 0.804920 | 1.713631e-49 | -8.615850e-47 |
| Msa0395790 | Msa1236240 | 0.803792 | 2.943636e-49 | -8.615850e-47 |
| Msa0403660 | Msa1236240 | 0.809103 | 2.231961e-50 | -8.615850e-47 |
| Msa0405130 | Msa1236240 | 0.801172 | 1.020646e-48 | -8.615850e-47 |
| Msa0406770 | Msa1236240 | 0.809150 | 2.181238e-50 | -8.615850e-47 |
| Msa0417880 | Msa1236240 | 0.806063 | 9.866405e-50 | -8.615850e-47 |
| Msa0464680 | Msa1236240 | 0.803282 | 3.755069e-49 | -8.615850e-47 |
| Msa0467430 | Msa1236240 | 0.809182 | 2.146769e-50 | -8.615850e-47 |
| Msa0469160 | Msa1236240 | 0.824646 | 7.209047e-54 | -8.615850e-47 |
| Msa0474730 | Msa1236240 | 0.810347 | 1.206147e-50 | -8.615850e-47 |
| Msa1010070 | Msa1236240 | 0.804242 | 2.372881e-49 | -8.615850e-47 |
| Msa1016620 | Msa1236240 | 0.828005 | 1.143342e-54 | -8.615850e-47 |
| Msa1020510 | Msa1236240 | 0.807558 | 4.766086e-50 | -8.615850e-47 |
| Msa1031930 | Msa1236240 | 0.824625 | 7.291533e-54 | -8.615850e-47 |
| Msa1034500 | Msa1236240 | 0.813278 | 2.775291e-51 | -8.615850e-47 |
| Msa1038080 | Msa1236240 | 0.825392 | 4.806956e-54 | -8.615850e-47 |
| Msa1047870 | Msa1236240 | 0.816237 | 6.134556e-52 | -8.615850e-47 |
| Msa1048920 | Msa1236240 | 0.803337 | 3.657798e-49 | -8.615850e-47 |
| Msa1084950 | Msa1236240 | 0.805496 | 1.297835e-49 | -8.615850e-47 |
| Msa1085330 | Msa1236240 | 0.804788 | 1.826191e-49 | -8.615850e-47 |
| Msa1102770 | Msa1236240 | 0.805472 | 1.313036e-49 | -8.615850e-47 |
| Msa0255550 | Msa1236240 | 0.805392 | 1.365013e-49 | -8.615850e-47 |
| Msa0258310 | Msa1236240 | 0.807871 | 4.089131e-50 | -8.615850e-47 |
| Msa0259500 | Msa1236240 | 0.810849 | 9.395714e-51 | -8.615850e-47 |
| Msa0261340 | Msa1236240 | 0.815175 | 1.057422e-51 | -8.615850e-47 |
| Msa0264780 | Msa1236240 | 0.809354 | 1.972240e-50 | -8.615850e-47 |
| Msa0283450 | Msa1236240 | 0.813718 | 2.220935e-51 | -8.615850e-47 |
| Msa0292120 | Msa1236240 | 0.819057 | 1.418543e-52 | -8.615850e-47 |
| Msa0300270 | Msa1236240 | 0.833872 | 4.155648e-56 | -8.615850e-47 |
| Msa0300320 | Msa1236240 | 0.839476 | 1.549077e-57 | -8.615850e-47 |
| Msa0300690 | Msa1236240 | 0.818185 | 2.236340e-52 | -8.615850e-47 |
| Msa0305700 | Msa1236240 | 0.803501 | 3.382766e-49 | -8.615850e-47 |
| Msa0312530 | Msa1236240 | 0.807285 | 5.447385e-50 | -8.615850e-47 |
| Msa0327750 | Msa1236240 | 0.808865 | 2.509804e-50 | -8.615850e-47 |
| Msa0330340 | Msa1236240 | 0.828404 | 9.162055e-55 | -8.615850e-47 |
| Msa0332000 | Msa1236240 | 0.801783 | 7.649996e-49 | -8.615850e-47 |
| Msa0337700 | Msa1236240 | 0.828301 | 9.702352e-55 | -8.615850e-47 |
| Msa0341540 | Msa1236240 | 0.803187 | 3.928864e-49 | -8.615850e-47 |
| Msa0360210 | Msa1236240 | 0.808289 | 3.332864e-50 | -8.615850e-47 |
| Msa1112380 | Msa1236240 | 0.807215 | 5.634462e-50 | -8.615850e-47 |
| Msa1121490 | Msa1236240 | 0.813246 | 2.820234e-51 | -8.615850e-47 |
| Msa1133220 | Msa1236240 | 0.807530 | 4.831585e-50 | -8.615850e-47 |
| Msa1135270 | Msa1236240 | 0.812389 | 4.345468e-51 | -8.615850e-47 |
| Msa1137570 | Msa1236240 | 0.824636 | 7.250656e-54 | -8.615850e-47 |
| Msa1139890 | Msa1236240 | 0.826707 | 2.340572e-54 | -8.615850e-47 |
| Msa1144750 | Msa1236240 | 0.809010 | 2.336800e-50 | -8.615850e-47 |
| Msa1151910 | Msa1236240 | 0.804856 | 1.766669e-49 | -8.615850e-47 |
| Msa1158310 | Msa1236240 | 0.801606 | 8.316928e-49 | -8.615850e-47 |
| Msa1176060 | Msa1236240 | 0.937613 | 2.604612e-98 | -8.615850e-47 |
| Msa1199830 | Msa1236240 | -0.826629 | 2.442343e-54 | -8.615850e-47 |
| Msa1208160 | Msa1236240 | 0.808393 | 3.166183e-50 | -8.615850e-47 |
| Msa1208430 | Msa1236240 | 0.823204 | 1.570722e-53 | -8.615850e-47 |
| Msa0513160 | Msa1236240 | 0.804968 | 1.674571e-49 | -8.615850e-47 |
| Msa0542580 | Msa1236240 | 0.824171 | 9.324595e-54 | -8.615850e-47 |
| Msa0544660 | Msa1236240 | 0.802865 | 4.580863e-49 | -8.615850e-47 |
| Msa0556010 | Msa1236240 | 0.814000 | 1.924618e-51 | -8.615850e-47 |
| Msa0573380 | Msa1236240 | 0.822797 | 1.954160e-53 | -8.615850e-47 |
| Msa0574890 | Msa1236240 | 0.805061 | 1.601196e-49 | -8.615850e-47 |
| Msa0579660 | Msa1236240 | 0.805416 | 1.349173e-49 | -8.615850e-47 |
| Msa0601950 | Msa1236240 | 0.800865 | 1.179111e-48 | -8.615850e-47 |
| Msa0856920 | Msa1236240 | 0.823735 | 1.180291e-53 | -8.615850e-47 |
| Msa0861510 | Msa1236240 | 0.833497 | 5.154452e-56 | -8.615850e-47 |
| Msa0861530 | Msa1236240 | 0.831416 | 1.689976e-55 | -8.615850e-47 |
| Msa0861600 | Msa1236240 | 0.837276 | 5.717552e-57 | -8.615850e-47 |
| Msa0866520 | Msa1236240 | 0.804361 | 2.241466e-49 | -8.615850e-47 |
| Msa0868160 | Msa1236240 | 0.824441 | 8.058813e-54 | -8.615850e-47 |
| Msa0870530 | Msa1236240 | 0.807956 | 3.922319e-50 | -8.615850e-47 |
| Msa0875290 | Msa1236240 | 0.830436 | 2.940356e-55 | -8.615850e-47 |
| Msa0900620 | Msa1236240 | 0.840370 | 9.056835e-58 | -8.615850e-47 |
| Msa0922410 | Msa1236240 | 0.810453 | 1.144092e-50 | -8.615850e-47 |
| Msa0926470 | Msa1236240 | 0.828642 | 8.026077e-55 | -8.615850e-47 |
| Msa0934890 | Msa1236240 | 0.814308 | 1.646272e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236240 | MtrunA17_Chr8g0346171 | 95.783 | 498 | 15 | 2 | 1 | 498 | 1 | 492 | 0.0 | 984 |
| Msa1236240 | MtrunA17_Chr7g0266501 | 70.769 | 260 | 75 | 1 | 88 | 346 | 69 | 328 | 8.58e-138 | 405 |
| Msa1236240 | MtrunA17_Chr1g0196181 | 65.203 | 296 | 96 | 2 | 77 | 365 | 23 | 318 | 1.11e-135 | 400 |
| Msa1236240 | MtrunA17_Chr2g0321541 | 68.889 | 270 | 81 | 2 | 85 | 351 | 42 | 311 | 3.14e-131 | 388 |
| Msa1236240 | MtrunA17_Chr4g0026251 | 61.565 | 294 | 98 | 3 | 85 | 377 | 65 | 344 | 4.10e-128 | 377 |
| Msa1236240 | MtrunA17_Chr7g0268531 | 70.270 | 259 | 71 | 2 | 93 | 345 | 32 | 290 | 2.78e-122 | 365 |
| Msa1236240 | MtrunA17_Chr7g0250591 | 65.217 | 161 | 54 | 1 | 154 | 314 | 14 | 172 | 6.52e-72 | 228 |
| Msa1236240 | MtrunA17_Chr5g0426461 | 65.584 | 154 | 49 | 1 | 154 | 307 | 16 | 165 | 1.40e-66 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236240 | AT2G46710.1 | 52.964 | 506 | 171 | 12 | 1 | 498 | 1 | 447 | 2.75e-160 | 462 |
| Msa1236240 | AT5G22400.1 | 71.154 | 260 | 75 | 0 | 87 | 346 | 87 | 346 | 3.11e-137 | 404 |
| Msa1236240 | AT3G11490.1 | 65.636 | 291 | 94 | 1 | 91 | 375 | 67 | 357 | 1.71e-135 | 399 |
| Msa1236240 | AT4G03100.1 | 68.401 | 269 | 73 | 2 | 88 | 344 | 39 | 307 | 2.36e-133 | 393 |
| Msa1236240 | AT1G08340.1 | 70.130 | 231 | 69 | 0 | 115 | 345 | 1 | 231 | 4.56e-121 | 358 |
Find 114 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACCAGTTTGCAATAT+TGG | 0.157516 | 8_2:-14807751 | Msa1236240:CDS |
| TTCATCTTTCTTCTTGTTGT+TGG | 0.240192 | 8_2:+14807923 | None:intergenic |
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8_2:-14806380 | Msa1236240:intron |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8_2:+14804854 | None:intergenic |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8_2:-14806710 | Msa1236240:intron |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8_2:+14804713 | None:intergenic |
| TAGAGAGAAAATGAAGAGTT+TGG | 0.320950 | 8_2:+14808211 | None:intergenic |
| ATGAAAATGTGATATGGTTT+TGG | 0.329026 | 8_2:+14808142 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8_2:+14806443 | None:intergenic |
| ACTTGAATGAAAATGTGATA+TGG | 0.353168 | 8_2:+14808136 | None:intergenic |
| CGCACAATGTTAACAATTGT+AGG | 0.355043 | 8_2:-14804561 | Msa1236240:three_prime_UTR |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8_2:-14806640 | Msa1236240:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8_2:-14806391 | Msa1236240:CDS |
| TTGTTGGTTACTTGTGCAAC+AGG | 0.362492 | 8_2:+14807939 | None:intergenic |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8_2:+14806635 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8_2:+14804725 | None:intergenic |
| GGGAAATTATGAAAGACAAT+TGG | 0.381230 | 8_2:+14808240 | None:intergenic |
| GAGGGAAGATGTTTCTTCCT+TGG | 0.381917 | 8_2:-14807679 | Msa1236240:CDS |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8_2:-14805706 | Msa1236240:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8_2:-14805722 | Msa1236240:CDS |
| TGCATGAATCAATGCAGTTA+AGG | 0.415964 | 8_2:+14805204 | None:intergenic |
| GCATGAATCAATGCAGTTAA+GGG | 0.418194 | 8_2:+14805205 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8_2:+14805075 | None:intergenic |
| ATTATGAAAGACAATTGGAT+TGG | 0.424236 | 8_2:+14808245 | None:intergenic |
| TTTCTTCCTTGGATATTAGC+TGG | 0.437424 | 8_2:-14807668 | Msa1236240:CDS |
| TGCATAAACAAGGTTTAAAT+CGG | 0.438212 | 8_2:+14804534 | None:intergenic |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8_2:+14804746 | None:intergenic |
| CTATATCCAATATTGCAAAC+TGG | 0.444268 | 8_2:+14807745 | None:intergenic |
| ACTACAACTGCAACCGCATC+AGG | 0.458627 | 8_2:-14804602 | Msa1236240:three_prime_UTR |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8_2:+14805055 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8_2:-14805831 | Msa1236240:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8_2:+14807558 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8_2:-14806668 | Msa1236240:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8_2:-14806429 | Msa1236240:CDS |
| TTATGAAAGACAATTGGATT+GGG | 0.480560 | 8_2:+14808246 | None:intergenic |
| TTTAAGTTGTAACAGCTACT+TGG | 0.481948 | 8_2:-14804441 | Msa1236240:three_prime_UTR |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8_2:-14804684 | Msa1236240:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8_2:+14804955 | None:intergenic |
| AATGAAGAGTTTGGTTGAGA+GGG | 0.486933 | 8_2:+14808220 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8_2:-14804685 | Msa1236240:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8_2:+14805725 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8_2:-14804772 | Msa1236240:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8_2:-14807583 | Msa1236240:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8_2:-14804971 | Msa1236240:CDS |
| GTTTCAAGACAATTCACAAA+AGG | 0.497631 | 8_2:-14807789 | Msa1236240:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8_2:-14805649 | Msa1236240:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8_2:-14804706 | Msa1236240:CDS |
| TCAAAATCATGCAACATAGC+TGG | 0.506873 | 8_2:-14807984 | Msa1236240:CDS |
| AAATGAAGAGTTTGGTTGAG+AGG | 0.509274 | 8_2:+14808219 | None:intergenic |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8_2:-14805056 | Msa1236240:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8_2:+14807567 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8_2:+14805618 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8_2:+14806372 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8_2:-14806430 | Msa1236240:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8_2:-14804958 | Msa1236240:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8_2:+14805789 | None:intergenic |
| GCAACCGCATCAGGTATAGT+TGG | 0.532086 | 8_2:-14804593 | Msa1236240:three_prime_UTR |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8_2:+14805729 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8_2:-14806614 | Msa1236240:CDS |
| TGTAACTTGCAGTGTGGAGA+GGG | 0.539058 | 8_2:-14807697 | Msa1236240:CDS |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8_2:-14807557 | Msa1236240:intron |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8_2:+14804958 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8_2:-14807572 | Msa1236240:CDS |
| TGAAAGACAATTGGATTGGG+TGG | 0.553722 | 8_2:+14808249 | None:intergenic |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8_2:-14804701 | Msa1236240:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8_2:-14804765 | Msa1236240:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8_2:-14804808 | Msa1236240:CDS |
| ACAACAAGAACAAGAACAAG+AGG | 0.572248 | 8_2:-14807901 | Msa1236240:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8_2:-14805032 | Msa1236240:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8_2:-14804705 | Msa1236240:CDS |
| AGGTGAGGTAAAACACAAAG+AGG | 0.576387 | 8_2:+14808096 | None:intergenic |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8_2:-14805721 | Msa1236240:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8_2:+14805028 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8_2:-14804791 | Msa1236240:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8_2:+14807582 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8_2:-14804940 | Msa1236240:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8_2:-14804695 | Msa1236240:CDS |
| ATGTTTGAAAATGTTAACAA+AGG | 0.594976 | 8_2:-14804386 | Msa1236240:three_prime_UTR |
| GACACGTGTCTCACTTCGGT+TGG | 0.596127 | 8_2:+14807645 | None:intergenic |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8_2:+14805816 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8_2:-14804985 | Msa1236240:CDS |
| TTGTAACTTGCAGTGTGGAG+AGG | 0.609827 | 8_2:-14807698 | Msa1236240:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8_2:+14805058 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8_2:+14805833 | None:intergenic |
| TGGTCTTAAATAAAGCTGAA+AGG | 0.615351 | 8_2:+14808059 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8_2:-14805625 | Msa1236240:intron |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8_2:+14804700 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8_2:+14806464 | None:intergenic |
| GTCACACAAGCCATAAAACA+AGG | 0.618321 | 8_2:+14804509 | None:intergenic |
| TGCGGTTGCAGTTGTAGTTG+CGG | 0.622958 | 8_2:+14804607 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8_2:-14806667 | Msa1236240:CDS |
| ATGTGACACGTGTCTCACTT+CGG | 0.625234 | 8_2:+14807641 | None:intergenic |
| TGTTGGTTACTTGTGCAACA+GGG | 0.626928 | 8_2:+14807940 | None:intergenic |
| AGGTAAAACACAAAGAGGGT+TGG | 0.626972 | 8_2:+14808101 | None:intergenic |
| ACATCCAACTATACCTGATG+CGG | 0.629151 | 8_2:+14804589 | None:intergenic |
| CATGAATCAATGCAGTTAAG+GGG | 0.629505 | 8_2:+14805206 | None:intergenic |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8_2:-14805107 | Msa1236240:CDS |
| GGTTGGCCAGCTAATATCCA+AGG | 0.633161 | 8_2:+14807662 | None:intergenic |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8_2:-14807571 | Msa1236240:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8_2:-14806717 | Msa1236240:intron |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8_2:+14805078 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8_2:-14806493 | Msa1236240:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8_2:-14806415 | Msa1236240:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8_2:-14806611 | Msa1236240:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8_2:+14804747 | None:intergenic |
| GGTGAGGTAAAACACAAAGA+GGG | 0.651496 | 8_2:+14808097 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8_2:+14805745 | None:intergenic |
| AAACAAGGCATGCATAAACA+AGG | 0.653736 | 8_2:+14804524 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8_2:+14805617 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8_2:-14804930 | Msa1236240:CDS |
| ATCTATTGTAACTTGCAGTG+TGG | 0.662855 | 8_2:-14807703 | Msa1236240:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8_2:-14804860 | Msa1236240:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8_2:-14805808 | Msa1236240:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8_2:+14806400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAGAAAAAAAAATGAA+GGG | + | chr8_2:14804567-14804586 | None:intergenic | 15.0% |
| !! | ATAGATATAAAAAATTTACC+TGG | + | chr8_2:14805063-14805082 | None:intergenic | 15.0% |
| !! | AACATGAAATTTATGTAATT+TGG | - | chr8_2:14805094-14805113 | Msa1236240:CDS | 15.0% |
| !!! | TCAATTTTGTTTTGAATTTT+TGG | - | chr8_2:14805212-14805231 | Msa1236240:CDS | 15.0% |
| !! | TACTTACATTTACAATAAAA+TGG | - | chr8_2:14805508-14805527 | Msa1236240:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | - | chr8_2:14806743-14806762 | Msa1236240:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | + | chr8_2:14807766-14807785 | None:intergenic | 15.0% |
| !! | CTAACAAGAAAAAAAAATGA+AGG | + | chr8_2:14804568-14804587 | None:intergenic | 20.0% |
| !! | CATACTTTATCTAATTTCAA+GGG | + | chr8_2:14805379-14805398 | None:intergenic | 20.0% |
| !! | TCATACTTTATCTAATTTCA+AGG | + | chr8_2:14805380-14805399 | None:intergenic | 20.0% |
| !!! | ATTCCTCTTAAGAAAATTTT+AGG | - | chr8_2:14805402-14805421 | Msa1236240:intron | 20.0% |
| !! | AAGTACAATAAAAGATTCAT+AGG | + | chr8_2:14805493-14805512 | None:intergenic | 20.0% |
| !! | TTTACAATAAAATGGTAGAA+TGG | - | chr8_2:14805516-14805535 | Msa1236240:intron | 20.0% |
| !! | AAAATACAGATAATCAATCA+AGG | + | chr8_2:14805823-14805842 | None:intergenic | 20.0% |
| !! | AAATTACAGAACATACTTTA+AGG | + | chr8_2:14806014-14806033 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | - | chr8_2:14806070-14806089 | Msa1236240:intron | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | + | chr8_2:14806257-14806276 | None:intergenic | 20.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | - | chr8_2:14806464-14806483 | Msa1236240:CDS | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | + | chr8_2:14806580-14806599 | None:intergenic | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | - | chr8_2:14806580-14806599 | Msa1236240:intron | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | + | chr8_2:14806734-14806753 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | - | chr8_2:14807132-14807151 | Msa1236240:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | + | chr8_2:14807332-14807351 | None:intergenic | 20.0% |
| !! | ATGTTTGAAAATGTTAACAA+AGG | - | chr8_2:14808213-14808232 | Msa1236240:five_prime_UTR | 20.0% |
| ! | TTATGAAAGACAATTGGATT+GGG | + | chr8_2:14804356-14804375 | None:intergenic | 25.0% |
| ! | ATTATGAAAGACAATTGGAT+TGG | + | chr8_2:14804357-14804376 | None:intergenic | 25.0% |
| !!! | ATATGGTTTTGGTTAAGTAA+AGG | + | chr8_2:14804449-14804468 | None:intergenic | 25.0% |
| !! | ATGAAAATGTGATATGGTTT+TGG | + | chr8_2:14804460-14804479 | None:intergenic | 25.0% |
| ! | ACTTGAATGAAAATGTGATA+TGG | + | chr8_2:14804466-14804485 | None:intergenic | 25.0% |
| !! | GAAAGGATCTGAATATTTTA+AGG | + | chr8_2:14804526-14804545 | None:intergenic | 25.0% |
| ! | AAGAAAAAAAAATGAAGGGT+TGG | + | chr8_2:14804563-14804582 | None:intergenic | 25.0% |
| !!! | GTTACTTTTGATAGATTCAA+TGG | - | chr8_2:14804981-14805000 | Msa1236240:CDS | 25.0% |
| !! | AAGCCTAAAATTTTCTTAAG+AGG | + | chr8_2:14805408-14805427 | None:intergenic | 25.0% |
| !!! | AATGCTTTATTTCTTCTTGT+AGG | - | chr8_2:14805454-14805473 | Msa1236240:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | - | chr8_2:14806040-14806059 | Msa1236240:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | - | chr8_2:14806312-14806331 | Msa1236240:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | - | chr8_2:14806381-14806400 | Msa1236240:CDS | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | - | chr8_2:14806468-14806487 | Msa1236240:CDS | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | - | chr8_2:14806694-14806713 | Msa1236240:CDS | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | - | chr8_2:14807051-14807070 | Msa1236240:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | + | chr8_2:14807114-14807133 | None:intergenic | 25.0% |
| ! | GCTAATTGTACAAAATATCA+GGG | + | chr8_2:14807198-14807217 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAAAATATC+AGG | + | chr8_2:14807199-14807218 | None:intergenic | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | - | chr8_2:14807199-14807218 | Msa1236240:intron | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | - | chr8_2:14807237-14807256 | Msa1236240:intron | 25.0% |
| !! | CTTGAAAATGCATTTTTACA+AGG | - | chr8_2:14807938-14807957 | Msa1236240:CDS | 25.0% |
| ! | TGCATAAACAAGGTTTAAAT+CGG | + | chr8_2:14808068-14808087 | None:intergenic | 25.0% |
| GGGAAATTATGAAAGACAAT+TGG | + | chr8_2:14804362-14804381 | None:intergenic | 30.0% | |
| TAGAGAGAAAATGAAGAGTT+TGG | + | chr8_2:14804391-14804410 | None:intergenic | 30.0% | |
| !! | TTTTGGTTAAGTAAAGGTTG+TGG | + | chr8_2:14804443-14804462 | None:intergenic | 30.0% |
| !!! | GATCTGAATATTTTAAGGTG+AGG | + | chr8_2:14804521-14804540 | None:intergenic | 30.0% |
| ! | TGGTCTTAAATAAAGCTGAA+AGG | + | chr8_2:14804543-14804562 | None:intergenic | 30.0% |
| !! | TGCATGATTTTGATCGAAAA+AGG | + | chr8_2:14804608-14804627 | None:intergenic | 30.0% |
| ! | TTCATCTTTCTTCTTGTTGT+TGG | + | chr8_2:14804679-14804698 | None:intergenic | 30.0% |
| GTTTCAAGACAATTCACAAA+AGG | - | chr8_2:14804810-14804829 | Msa1236240:CDS | 30.0% | |
| TCAAAACCAGTTTGCAATAT+TGG | - | chr8_2:14804848-14804867 | Msa1236240:CDS | 30.0% | |
| CTATATCCAATATTGCAAAC+TGG | + | chr8_2:14804857-14804876 | None:intergenic | 30.0% | |
| ! | GATAGATTCAATGGTTTTCT+TGG | - | chr8_2:14804990-14805009 | Msa1236240:CDS | 30.0% |
| TAAAAAATTTACCTGGCACT+AGG | + | chr8_2:14805056-14805075 | None:intergenic | 30.0% | |
| TTAGTATTTGTTTGTGTCTC+TGG | - | chr8_2:14805274-14805293 | Msa1236240:intron | 30.0% | |
| AAGCTGATGTAGATATTAAC+AGG | - | chr8_2:14805541-14805560 | Msa1236240:intron | 30.0% | |
| TGGTAAGGAACTATTATGTA+TGG | - | chr8_2:14805628-14805647 | Msa1236240:CDS | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | - | chr8_2:14805780-14805799 | Msa1236240:CDS | 30.0% |
| AGTGTTCTTATGATGATAGA+GGG | - | chr8_2:14805932-14805951 | Msa1236240:intron | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | - | chr8_2:14805985-14806004 | Msa1236240:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | - | chr8_2:14806170-14806189 | Msa1236240:intron | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | - | chr8_2:14806208-14806227 | Msa1236240:intron | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | - | chr8_2:14806284-14806303 | Msa1236240:intron | 30.0% | |
| ! | CCAACGCATACAAAATTTTA+AGG | + | chr8_2:14806355-14806374 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | - | chr8_2:14806352-14806371 | Msa1236240:intron | 30.0% |
| GCTCATAATTTACTGATAAG+TGG | - | chr8_2:14806380-14806399 | Msa1236240:intron | 30.0% | |
| ! | CTGTTCATTTTCAACAACAT+CGG | + | chr8_2:14806919-14806938 | None:intergenic | 30.0% |
| TAATCAACCAGAAACATTTC+TGG | + | chr8_2:14807061-14807080 | None:intergenic | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | - | chr8_2:14807614-14807633 | Msa1236240:CDS | 30.0% | |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | + | chr8_2:14807620-14807639 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | - | chr8_2:14807715-14807734 | Msa1236240:CDS | 30.0% |
| TCTTGCCATTGTAAATACTA+GGG | - | chr8_2:14807894-14807913 | Msa1236240:CDS | 30.0% | |
| !!! | TTTATGCATGCCTTGTTTTA+TGG | - | chr8_2:14808080-14808099 | Msa1236240:five_prime_UTR | 30.0% |
| !! | TTTAAGTTGTAACAGCTACT+TGG | - | chr8_2:14808158-14808177 | Msa1236240:five_prime_UTR | 30.0% |
| AATGAAGAGTTTGGTTGAGA+GGG | + | chr8_2:14804382-14804401 | None:intergenic | 35.0% | |
| AAATGAAGAGTTTGGTTGAG+AGG | + | chr8_2:14804383-14804402 | None:intergenic | 35.0% | |
| TTGTGGTGAAAAATGGAAGA+AGG | + | chr8_2:14804426-14804445 | None:intergenic | 35.0% | |
| GTAAAGGTTGTGGTGAAAAA+TGG | + | chr8_2:14804433-14804452 | None:intergenic | 35.0% | |
| TCAAAATCATGCAACATAGC+TGG | - | chr8_2:14804615-14804634 | Msa1236240:three_prime_UTR | 35.0% | |
| ACAACAAGAACAAGAACAAG+AGG | - | chr8_2:14804698-14804717 | Msa1236240:CDS | 35.0% | |
| ! | CAATGATGATGATGATGATG+AGG | - | chr8_2:14804761-14804780 | Msa1236240:CDS | 35.0% |
| !!! | CTGGTTTTGATGATTGTTGT+TGG | + | chr8_2:14804838-14804857 | None:intergenic | 35.0% |
| ! | ATCTATTGTAACTTGCAGTG+TGG | - | chr8_2:14804896-14804915 | Msa1236240:CDS | 35.0% |
| TTTCTTCCTTGGATATTAGC+TGG | - | chr8_2:14804931-14804950 | Msa1236240:CDS | 35.0% | |
| !! | CCTTGCATTGTATTTTGAGT+TGG | + | chr8_2:14805723-14805742 | None:intergenic | 35.0% |
| CCAACTCAAAATACAATGCA+AGG | - | chr8_2:14805720-14805739 | Msa1236240:CDS | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | + | chr8_2:14805881-14805900 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | - | chr8_2:14805882-14805901 | Msa1236240:intron | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | - | chr8_2:14805931-14805950 | Msa1236240:intron | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | - | chr8_2:14805959-14805978 | Msa1236240:intron | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | + | chr8_2:14805967-14805986 | None:intergenic | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | - | chr8_2:14805988-14806007 | Msa1236240:intron | 35.0% |
| GTCTAATTTCATGCTTTCCA+TGG | - | chr8_2:14806092-14806111 | Msa1236240:intron | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | - | chr8_2:14806169-14806188 | Msa1236240:intron | 35.0% | |
| ! | TTGTTTATCCGGCTTGATTA+AGG | - | chr8_2:14806219-14806238 | Msa1236240:intron | 35.0% |
| CGTAAATACCTTAATCAAGC+CGG | + | chr8_2:14806230-14806249 | None:intergenic | 35.0% | |
| AAGTTACGCAAATAACCGAA+AGG | + | chr8_2:14806302-14806321 | None:intergenic | 35.0% | |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | - | chr8_2:14806358-14806377 | Msa1236240:intron | 35.0% |
| TATCTATTAGAACAGCAACC+AGG | + | chr8_2:14806601-14806620 | None:intergenic | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | - | chr8_2:14806748-14806767 | Msa1236240:intron | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | + | chr8_2:14806984-14807003 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | + | chr8_2:14806985-14807004 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | - | chr8_2:14807207-14807226 | Msa1236240:intron | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | - | chr8_2:14807366-14807385 | Msa1236240:intron | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | + | chr8_2:14807396-14807415 | None:intergenic | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | + | chr8_2:14807397-14807416 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | + | chr8_2:14807398-14807417 | None:intergenic | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | + | chr8_2:14807544-14807563 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | - | chr8_2:14807543-14807562 | Msa1236240:intron | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | + | chr8_2:14807547-14807566 | None:intergenic | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | - | chr8_2:14807893-14807912 | Msa1236240:CDS | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | + | chr8_2:14807902-14807921 | None:intergenic | 35.0% | |
| CGCACAATGTTAACAATTGT+AGG | - | chr8_2:14808038-14808057 | Msa1236240:five_prime_UTR | 35.0% | |
| AAACAAGGCATGCATAAACA+AGG | + | chr8_2:14808078-14808097 | None:intergenic | 35.0% | |
| ! | TGAAAGACAATTGGATTGGG+TGG | + | chr8_2:14804353-14804372 | None:intergenic | 40.0% |
| TGGTGAAAAATGGAAGAAGG+AGG | + | chr8_2:14804423-14804442 | None:intergenic | 40.0% | |
| AGGTAAAACACAAAGAGGGT+TGG | + | chr8_2:14804501-14804520 | None:intergenic | 40.0% | |
| GGTGAGGTAAAACACAAAGA+GGG | + | chr8_2:14804505-14804524 | None:intergenic | 40.0% | |
| AGGTGAGGTAAAACACAAAG+AGG | + | chr8_2:14804506-14804525 | None:intergenic | 40.0% | |
| ! | TGTTGGTTACTTGTGCAACA+GGG | + | chr8_2:14804662-14804681 | None:intergenic | 40.0% |
| ! | TTGTTGGTTACTTGTGCAAC+AGG | + | chr8_2:14804663-14804682 | None:intergenic | 40.0% |
| GTCTCTGGTATAGAAGATTC+TGG | - | chr8_2:14805289-14805308 | Msa1236240:intron | 40.0% | |
| TTTCGACATGTTAATCTGCG+TGG | - | chr8_2:14805608-14805627 | Msa1236240:intron | 40.0% | |
| ACATGTTAATCTGCGTGGTA+AGG | - | chr8_2:14805613-14805632 | Msa1236240:intron | 40.0% | |
| !! | TGATGCAGTGTGAAGGTATT+TGG | - | chr8_2:14805889-14805908 | Msa1236240:intron | 40.0% |
| TTCATGCTTTCCATGGATGA+AGG | - | chr8_2:14806099-14806118 | Msa1236240:intron | 40.0% | |
| !! | CAATGAACATCGATTCCATG+TGG | + | chr8_2:14806202-14806221 | None:intergenic | 40.0% |
| AGATGTTTGATCACGGACTT+CGG | + | chr8_2:14806535-14806554 | None:intergenic | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | + | chr8_2:14806786-14806805 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | - | chr8_2:14806791-14806810 | Msa1236240:intron | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | + | chr8_2:14806857-14806876 | None:intergenic | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | - | chr8_2:14806893-14806912 | Msa1236240:intron | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | + | chr8_2:14807092-14807111 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | - | chr8_2:14807492-14807511 | Msa1236240:intron | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | + | chr8_2:14807524-14807543 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | + | chr8_2:14807527-14807546 | None:intergenic | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | - | chr8_2:14807567-14807586 | Msa1236240:CDS | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | + | chr8_2:14807574-14807593 | None:intergenic | 40.0% |
| CCATTCTATTCTTCCTAAGG+TGG | + | chr8_2:14807644-14807663 | None:intergenic | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | - | chr8_2:14807641-14807660 | Msa1236240:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | + | chr8_2:14807647-14807666 | None:intergenic | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | - | chr8_2:14807659-14807678 | Msa1236240:CDS | 40.0% | |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | + | chr8_2:14807689-14807708 | None:intergenic | 40.0% |
| GTAACTCCAAGATACGAAAG+TGG | - | chr8_2:14807739-14807758 | Msa1236240:CDS | 40.0% | |
| AAAGGACCACTTTCGTATCT+TGG | + | chr8_2:14807748-14807767 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | - | chr8_2:14807791-14807810 | Msa1236240:CDS | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | - | chr8_2:14807808-14807827 | Msa1236240:CDS | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | + | chr8_2:14807855-14807874 | None:intergenic | 40.0% | |
| ! | GGCTTGCTCAATTGAAATAC+CGG | + | chr8_2:14807856-14807875 | None:intergenic | 40.0% |
| TTTACAATGGCAAGACTTGC+AGG | + | chr8_2:14807889-14807908 | None:intergenic | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | - | chr8_2:14807898-14807917 | Msa1236240:CDS | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | - | chr8_2:14807904-14807923 | Msa1236240:CDS | 40.0% | |
| ACATCCAACTATACCTGATG+CGG | + | chr8_2:14808013-14808032 | None:intergenic | 40.0% | |
| GTCACACAAGCCATAAAACA+AGG | + | chr8_2:14808093-14808112 | None:intergenic | 40.0% | |
| ! | TTGTAACTTGCAGTGTGGAG+AGG | - | chr8_2:14804901-14804920 | Msa1236240:CDS | 45.0% |
| ! | TGTAACTTGCAGTGTGGAGA+GGG | - | chr8_2:14804902-14804921 | Msa1236240:CDS | 45.0% |
| GAGGGAAGATGTTTCTTCCT+TGG | - | chr8_2:14804920-14804939 | Msa1236240:CDS | 45.0% | |
| ATGTGACACGTGTCTCACTT+CGG | + | chr8_2:14804961-14804980 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | - | chr8_2:14806106-14806125 | Msa1236240:intron | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | + | chr8_2:14806112-14806131 | None:intergenic | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | + | chr8_2:14806138-14806157 | None:intergenic | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | + | chr8_2:14806159-14806178 | None:intergenic | 45.0% | |
| AACAAAGGGATAGTGCCACA+TGG | - | chr8_2:14806184-14806203 | Msa1236240:intron | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | + | chr8_2:14806296-14806315 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | - | chr8_2:14806509-14806528 | Msa1236240:intron | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | + | chr8_2:14806520-14806539 | None:intergenic | 45.0% | |
| GAGCACGAGATGTTTGATCA+CGG | + | chr8_2:14806542-14806561 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | + | chr8_2:14806769-14806788 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | - | chr8_2:14806768-14806787 | Msa1236240:intron | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | + | chr8_2:14806813-14806832 | None:intergenic | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | - | chr8_2:14806878-14806897 | Msa1236240:intron | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | - | chr8_2:14807628-14807647 | Msa1236240:CDS | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | - | chr8_2:14807690-14807709 | Msa1236240:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | + | chr8_2:14807877-14807896 | None:intergenic | 45.0% | |
| ! | GGTTGGCCAGCTAATATCCA+AGG | + | chr8_2:14804940-14804959 | None:intergenic | 50.0% |
| ACCTCAGGCTGAAACTCAGA+AGG | + | chr8_2:14805020-14805039 | None:intergenic | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | - | chr8_2:14805027-14805046 | Msa1236240:CDS | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | - | chr8_2:14805028-14805047 | Msa1236240:CDS | 50.0% | |
| GTAGTTCAGACGCTGCTAAG+CGG | - | chr8_2:14805666-14805685 | Msa1236240:CDS | 50.0% | |
| AAGTGGGCAGTTTGTCTGAG+CGG | - | chr8_2:14806397-14806416 | Msa1236240:CDS | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | - | chr8_2:14806491-14806510 | Msa1236240:intron | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | + | chr8_2:14806502-14806521 | None:intergenic | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | + | chr8_2:14806873-14806892 | None:intergenic | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | + | chr8_2:14806877-14806896 | None:intergenic | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | - | chr8_2:14806877-14806896 | Msa1236240:intron | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | - | chr8_2:14807677-14807696 | Msa1236240:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | - | chr8_2:14807915-14807934 | Msa1236240:CDS | 50.0% | |
| TGCGGTTGCAGTTGTAGTTG+CGG | + | chr8_2:14807995-14808014 | None:intergenic | 50.0% | |
| ACTACAACTGCAACCGCATC+AGG | - | chr8_2:14807997-14808016 | Msa1236240:CDS | 50.0% | |
| GCAACCGCATCAGGTATAGT+TGG | - | chr8_2:14808006-14808025 | Msa1236240:exon | 50.0% | |
| GACACGTGTCTCACTTCGGT+TGG | + | chr8_2:14804957-14804976 | None:intergenic | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | - | chr8_2:14805016-14805035 | Msa1236240:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | + | chr8_2:14805035-14805054 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | + | chr8_2:14805044-14805063 | None:intergenic | 55.0% | |
| !! | CTACAAGGGTACCTAGTGCC+AGG | - | chr8_2:14805042-14805061 | Msa1236240:CDS | 55.0% |
| AGTGGGCAGTTTGTCTGAGC+GGG | - | chr8_2:14806398-14806417 | Msa1236240:CDS | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | - | chr8_2:14806950-14806969 | Msa1236240:intron | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | - | chr8_2:14806974-14806993 | Msa1236240:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | + | chr8_2:14807384-14807403 | None:intergenic | 55.0% | |
| AGAGAAACTTCGGAGCTCCG+AGG | - | chr8_2:14807669-14807688 | Msa1236240:CDS | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | - | chr8_2:14807914-14807933 | Msa1236240:CDS | 55.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | - | chr8_2:14806399-14806418 | Msa1236240:CDS | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | - | chr8_2:14806403-14806422 | Msa1236240:CDS | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | - | chr8_2:14806413-14806432 | Msa1236240:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | - | chr8_2:14806414-14806433 | Msa1236240:CDS | 60.0% | |
| ACGGCGTGCGCAAGTTATGC+AGG | - | chr8_2:14807827-14807846 | Msa1236240:CDS | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | - | chr8_2:14807834-14807853 | Msa1236240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 14804346 | 14808275 | 14804346 | ID=Msa1236240;Name=Msa1236240 |
| chr8_2 | mRNA | 14804346 | 14808275 | 14804346 | ID=Msa1236240-mRNA-1;Parent=Msa1236240;Name=Msa1236240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=251|1|1|1|1|1|5|333|498 |
| chr8_2 | exon | 14804346 | 14805236 | 14804346 | ID=Msa1236240-mRNA-1:exon:5721;Parent=Msa1236240-mRNA-1 |
| chr8_2 | exon | 14805626 | 14805856 | 14805626 | ID=Msa1236240-mRNA-1:exon:5720;Parent=Msa1236240-mRNA-1 |
| chr8_2 | exon | 14806381 | 14806500 | 14806381 | ID=Msa1236240-mRNA-1:exon:5719;Parent=Msa1236240-mRNA-1 |
| chr8_2 | exon | 14806604 | 14806724 | 14806604 | ID=Msa1236240-mRNA-1:exon:5718;Parent=Msa1236240-mRNA-1 |
| chr8_2 | exon | 14807558 | 14808275 | 14807558 | ID=Msa1236240-mRNA-1:exon:5717;Parent=Msa1236240-mRNA-1 |
| chr8_2 | five_prime_UTR | 14808025 | 14808275 | 14808025 | ID=Msa1236240-mRNA-1:five_prime_utr;Parent=Msa1236240-mRNA-1 |
| chr8_2 | CDS | 14807558 | 14808024 | 14807558 | ID=Msa1236240-mRNA-1:cds;Parent=Msa1236240-mRNA-1 |
| chr8_2 | CDS | 14806604 | 14806724 | 14806604 | ID=Msa1236240-mRNA-1:cds;Parent=Msa1236240-mRNA-1 |
| chr8_2 | CDS | 14806381 | 14806500 | 14806381 | ID=Msa1236240-mRNA-1:cds;Parent=Msa1236240-mRNA-1 |
| chr8_2 | CDS | 14805626 | 14805856 | 14805626 | ID=Msa1236240-mRNA-1:cds;Parent=Msa1236240-mRNA-1 |
| chr8_2 | CDS | 14804679 | 14805236 | 14804679 | ID=Msa1236240-mRNA-1:cds;Parent=Msa1236240-mRNA-1 |
| chr8_2 | three_prime_UTR | 14804346 | 14804678 | 14804346 | ID=Msa1236240-mRNA-1:three_prime_utr;Parent=Msa1236240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
