Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0548820 | XP_003606781.2 | 94.574 | 129 | 2 | 1 | 1 | 124 | 1 | 129 | 2.28e-78 | 240 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0548820 | sp|Q8GWP3|COPT6_ARATH | 48.299 | 147 | 57 | 6 | 5 | 140 | 1 | 139 | 7.11e-30 | 109 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0548820 | G7JDP2 | 94.574 | 129 | 2 | 1 | 1 | 124 | 1 | 129 | 1.09e-78 | 240 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012820 | Msa0548820 | 0.807596 | 4.678066e-50 | -8.615850e-47 |
Msa0043940 | Msa0548820 | -0.801139 | 1.036855e-48 | -8.615850e-47 |
Msa0048950 | Msa0548820 | 0.816728 | 4.760468e-52 | -8.615850e-47 |
Msa0059880 | Msa0548820 | 0.810654 | 1.035098e-50 | -8.615850e-47 |
Msa0061600 | Msa0548820 | 0.804020 | 2.639286e-49 | -8.615850e-47 |
Msa0106130 | Msa0548820 | 0.816129 | 6.485117e-52 | -8.615850e-47 |
Msa0139460 | Msa0548820 | 0.806948 | 6.418546e-50 | -8.615850e-47 |
Msa0139720 | Msa0548820 | 0.809351 | 1.975331e-50 | -8.615850e-47 |
Msa0236610 | Msa0548820 | 0.809521 | 1.816114e-50 | -8.615850e-47 |
Msa0423680 | Msa0548820 | 0.803984 | 2.685406e-49 | -8.615850e-47 |
Msa0470370 | Msa0548820 | 0.809745 | 1.625714e-50 | -8.615850e-47 |
Msa0259110 | Msa0548820 | 0.805046 | 1.612261e-49 | -8.615850e-47 |
Msa0259300 | Msa0548820 | 0.803936 | 2.747842e-49 | -8.615850e-47 |
Msa0297650 | Msa0548820 | 0.814604 | 1.415804e-51 | -8.615850e-47 |
Msa0298270 | Msa0548820 | 0.806642 | 7.447999e-50 | -8.615850e-47 |
Msa0315300 | Msa0548820 | 0.814927 | 1.200567e-51 | -8.615850e-47 |
Msa0342130 | Msa0548820 | 0.809898 | 1.506721e-50 | -8.615850e-47 |
Msa0343720 | Msa0548820 | 0.803100 | 4.095290e-49 | -8.615850e-47 |
Msa0548820 | Msa0568610 | -0.807787 | 4.261120e-50 | -8.615850e-47 |
Msa0548820 | Msa0603950 | 0.808555 | 2.924568e-50 | -8.615850e-47 |
Msa0548820 | Msa0605470 | 0.808774 | 2.625364e-50 | -8.615850e-47 |
Msa0548820 | Msa0618520 | -0.804039 | 2.615611e-49 | -8.615850e-47 |
Msa0548820 | Msa0645100 | 0.805928 | 1.053303e-49 | -8.615850e-47 |
Msa0548820 | Msa0645150 | 0.842609 | 2.329723e-58 | -8.615850e-47 |
Msa0548820 | Msa0646040 | 0.802038 | 6.780110e-49 | -8.615850e-47 |
Msa0548820 | Msa0665910 | 0.809281 | 2.045067e-50 | -8.615850e-47 |
Msa0548820 | Msa0670360 | 0.807092 | 5.984639e-50 | -8.615850e-47 |
Msa0548820 | Msa0671490 | 0.805915 | 1.060101e-49 | -8.615850e-47 |
Msa0548820 | Msa0684720 | 0.801866 | 7.357074e-49 | -8.615850e-47 |
Msa0548820 | Msa0735130 | 0.801476 | 8.842618e-49 | -8.615850e-47 |
Msa0548820 | Msa0735280 | 0.802366 | 5.803787e-49 | -8.615850e-47 |
Msa0548820 | Msa0796430 | 0.806046 | 9.947714e-50 | -8.615850e-47 |
Msa0548820 | Msa0834270 | 0.810187 | 1.305569e-50 | -8.615850e-47 |
Msa0548820 | Msa0883640 | 0.808977 | 2.375662e-50 | -8.615850e-47 |
Msa0548820 | Msa0910830 | 0.809404 | 1.924128e-50 | -8.615850e-47 |
Msa0548820 | Msa0960090 | 0.809616 | 1.732657e-50 | -8.615850e-47 |
Msa0548820 | Msa0967820 | 0.809426 | 1.903259e-50 | -8.615850e-47 |
Msa0548820 | Msa0985700 | 0.812038 | 5.183503e-51 | -8.615850e-47 |
Msa0548820 | Msa1026050 | 0.808092 | 3.669387e-50 | -8.615850e-47 |
Msa0548820 | Msa1061670 | 0.804109 | 2.528766e-49 | -8.615850e-47 |
Msa0548820 | Msa1106960 | 0.800402 | 1.465729e-48 | -8.615850e-47 |
Msa0548820 | Msa1109880 | 0.800863 | 1.180520e-48 | -8.615850e-47 |
Msa0548820 | Msa1109890 | 0.833031 | 6.735929e-56 | -8.615850e-47 |
Msa0548820 | Msa1132560 | 0.806528 | 7.875669e-50 | -8.615850e-47 |
Msa0548820 | Msa1296870 | 0.811588 | 6.494339e-51 | -8.615850e-47 |
Msa0548820 | Msa1323160 | 0.810278 | 1.248041e-50 | -8.615850e-47 |
Msa0548820 | Msa1382180 | 0.814483 | 1.505341e-51 | -8.615850e-47 |
Msa0548820 | Msa1395690 | 0.800255 | 1.570107e-48 | -8.615850e-47 |
Msa0548820 | Msa1418190 | 0.812409 | 4.301632e-51 | -8.615850e-47 |
Msa0548820 | Msa1420020 | 0.804848 | 1.774190e-49 | -8.615850e-47 |
Msa0548820 | Msa1426420 | 0.800736 | 1.253107e-48 | -8.615850e-47 |
Msa0548820 | Msa1439120 | -0.805134 | 1.545386e-49 | -8.615850e-47 |
Msa0548820 | Msa1455660 | -0.804011 | 2.650950e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0548820 | MtrunA17_Chr4g0032581 | 94.574 | 129 | 2 | 1 | 1 | 124 | 1 | 129 | 2.09e-82 | 240 |
Msa0548820 | MtrunA17_Chr4g0032291 | 81.053 | 95 | 13 | 1 | 35 | 124 | 46 | 140 | 4.41e-46 | 148 |
Msa0548820 | MtrunA17_Chr4g0032571 | 72.951 | 122 | 26 | 3 | 9 | 124 | 4 | 124 | 8.38e-46 | 147 |
Msa0548820 | MtrunA17_Chr4g0032571 | 93.182 | 44 | 3 | 0 | 126 | 169 | 1 | 44 | 1.02e-13 | 64.7 |
Msa0548820 | MtrunA17_Chr7g0240861 | 47.692 | 130 | 60 | 3 | 17 | 138 | 12 | 141 | 1.24e-28 | 103 |
Msa0548820 | MtrunA17_Chr7g0240831 | 45.161 | 124 | 55 | 4 | 8 | 124 | 2 | 119 | 1.55e-27 | 100 |
Msa0548820 | MtrunA17_Chr7g0240841 | 45.161 | 124 | 55 | 4 | 8 | 124 | 2 | 119 | 1.55e-27 | 100 |
Msa0548820 | MtrunA17_Chr4g0008841 | 45.918 | 98 | 48 | 1 | 32 | 124 | 13 | 110 | 7.10e-26 | 96.3 |
Msa0548820 | MtrunA17_Chr1g0150721 | 36.667 | 120 | 49 | 5 | 31 | 124 | 1 | 119 | 1.07e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0548820 | AT2G26975.1 | 48.299 | 147 | 57 | 6 | 5 | 140 | 1 | 139 | 7.23e-31 | 109 |
Msa0548820 | AT5G59040.1 | 45.968 | 124 | 60 | 2 | 30 | 147 | 28 | 150 | 2.78e-27 | 100 |
Msa0548820 | AT5G59030.1 | 42.500 | 160 | 74 | 3 | 1 | 142 | 1 | 160 | 4.74e-27 | 100 |
Msa0548820 | AT3G46900.1 | 39.516 | 124 | 69 | 2 | 36 | 153 | 34 | 157 | 2.75e-22 | 87.8 |
Msa0548820 | AT2G37925.1 | 39.806 | 103 | 54 | 2 | 30 | 124 | 28 | 130 | 1.54e-19 | 80.5 |
Msa0548820 | AT5G20650.1 | 34.677 | 124 | 51 | 4 | 31 | 124 | 1 | 124 | 8.84e-11 | 57.4 |
Find 57 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGGGTTGGCCTAGCTTATT+TGG | 0.200727 | 4_1:-43129001 | Msa0548820:CDS |
TTTCAATGGTGGGGTGTTCT+TGG | 0.291991 | 4_1:-43128959 | Msa0548820:CDS |
GTACCATGCCCTGCATCTTT+TGG | 0.304326 | 4_1:+43125399 | None:intergenic |
TGGTACACATGACATTCTTC+TGG | 0.307161 | 4_1:-43125382 | Msa0548820:CDS |
CATTGATTCTCTTTGACAAT+TGG | 0.313757 | 4_1:-43129173 | Msa0548820:CDS |
TGATGCACATGACATTCTTC+TGG | 0.316430 | 4_1:-43129206 | Msa0548820:CDS |
TTGTTAGAGGATGATGATTT+TGG | 0.338915 | 4_1:+43125440 | None:intergenic |
CTCTTTGACAATTGGCCTGC+TGG | 0.349526 | 4_1:-43129165 | Msa0548820:CDS |
CTGTGCTTGGTCATGCTGTT+GGG | 0.361371 | 4_1:-43128933 | Msa0548820:intron |
CGAGAGAAATTCGATAAGTA+TGG | 0.373371 | 4_1:+43129095 | None:intergenic |
AATTGGCCTGCTGGTAATTC+TGG | 0.384528 | 4_1:-43129156 | Msa0548820:intron |
TGAACTAGACCGGCCACAAC+AGG | 0.384941 | 4_1:+43129042 | None:intergenic |
GGCCACAACAGGGTTTGAAC+CGG | 0.386419 | 4_1:+43129053 | None:intergenic |
GCTGTGCTTGGTCATGCTGT+TGG | 0.390679 | 4_1:-43128934 | Msa0548820:CDS |
CACTCATGTCTTTCAATGGT+GGG | 0.393883 | 4_1:-43128969 | Msa0548820:CDS |
CCTAGCTTATTTGGTTATGT+TGG | 0.401335 | 4_1:-43128992 | Msa0548820:CDS |
TTGAACCGGGTTTAATGAAC+CGG | 0.410106 | 4_1:+43129067 | None:intergenic |
GTGTTCTTGGTTGCTGTGCT+TGG | 0.410298 | 4_1:-43128946 | Msa0548820:CDS |
CATCATGGTACCGTTGTTAG+AGG | 0.416703 | 4_1:+43125427 | None:intergenic |
TCGAATTTCTCTCGGGCACC+CGG | 0.420022 | 4_1:-43129086 | Msa0548820:CDS |
ACCCATCATCATAGTGTCAT+TGG | 0.428445 | 4_1:+43129242 | None:intergenic |
TACCAATGACACTATGATGA+TGG | 0.457064 | 4_1:-43129244 | Msa0548820:CDS |
CATACTTATCGAATTTCTCT+CGG | 0.467194 | 4_1:-43129094 | Msa0548820:CDS |
GGTACACATGACATTCTTCT+GGG | 0.468931 | 4_1:-43125381 | Msa0548820:CDS |
GATGCACATGACATTCTTCT+GGG | 0.480501 | 4_1:-43129205 | Msa0548820:CDS |
GATGATGAGCCAAAAGATGC+AGG | 0.482603 | 4_1:-43125408 | Msa0548820:CDS |
GCACTCATGTCTTTCAATGG+TGG | 0.488475 | 4_1:-43128970 | Msa0548820:CDS |
CATGACATTCTTCTGGGGTA+AGG | 0.504549 | 4_1:-43125375 | Msa0548820:CDS |
GCCACAACAGGGTTTGAACC+GGG | 0.512994 | 4_1:+43129054 | None:intergenic |
TTGGCACTCATGTCTTTCAA+TGG | 0.515628 | 4_1:-43128973 | Msa0548820:CDS |
GGTTCAAACCCTGTTGTGGC+CGG | 0.535871 | 4_1:-43129051 | Msa0548820:CDS |
ATACTTATCGAATTTCTCTC+GGG | 0.539271 | 4_1:-43129093 | Msa0548820:CDS |
TTGGTAGATGATGATGACTT+TGG | 0.542496 | 4_1:+43129261 | None:intergenic |
ATGGATCATGACATGGATCA+TGG | 0.546244 | 4_1:-43129297 | Msa0548820:CDS |
CCAACATAACCAAATAAGCT+AGG | 0.548358 | 4_1:+43128992 | None:intergenic |
ACCCGGTTCAAACCCTGTTG+TGG | 0.557595 | 4_1:-43129055 | Msa0548820:CDS |
CAAAAGTGTCTGAACTAGAC+CGG | 0.563621 | 4_1:+43129032 | None:intergenic |
ACCAATGACACTATGATGAT+GGG | 0.572192 | 4_1:-43129243 | Msa0548820:CDS |
GTATGGACATGGCGAAAACA+AGG | 0.583113 | 4_1:+43129112 | None:intergenic |
CATGGCGAAAACAAGGATCA+AGG | 0.583573 | 4_1:+43129119 | None:intergenic |
ACAATATATTCACAGTAGCA+TGG | 0.584797 | 4_1:-43125480 | Msa0548820:intron |
GGCACCCGGTTCATTAAACC+CGG | 0.591272 | 4_1:-43129072 | Msa0548820:CDS |
ACTCATGTCTTTCAATGGTG+GGG | 0.593261 | 4_1:-43128968 | Msa0548820:CDS |
TAGCATGGATGAGATGTCAA+TGG | 0.595537 | 4_1:-43125465 | Msa0548820:CDS |
TGAACCGGGTTTAATGAACC+GGG | 0.596910 | 4_1:+43129068 | None:intergenic |
TACTTACCAGAATTACCAGC+AGG | 0.597954 | 4_1:+43129150 | None:intergenic |
GAGCCAAAAGATGCAGGGCA+TGG | 0.599077 | 4_1:-43125402 | Msa0548820:CDS |
AAATCATCATCCTCTAACAA+CGG | 0.612187 | 4_1:-43125437 | Msa0548820:CDS |
ATGATGAGCCAAAAGATGCA+GGG | 0.630505 | 4_1:-43125407 | Msa0548820:CDS |
TCATGACATGGATCATGGAA+TGG | 0.630684 | 4_1:-43129292 | Msa0548820:CDS |
AATAAGCTAGGCCAACCCTA+AGG | 0.634400 | 4_1:+43129004 | None:intergenic |
CATGGATCATGGAATGGCAA+TGG | 0.655000 | 4_1:-43129286 | Msa0548820:CDS |
AAATTCGATAAGTATGGACA+TGG | 0.659721 | 4_1:+43129101 | None:intergenic |
GAACTAGACCGGCCACAACA+GGG | 0.667595 | 4_1:+43129043 | None:intergenic |
AAACAGCATGGATCATGACA+TGG | 0.668548 | 4_1:-43129304 | None:intergenic |
GTACACATGACATTCTTCTG+GGG | 0.674780 | 4_1:-43125380 | Msa0548820:CDS |
ATGCACATGACATTCTTCTG+GGG | 0.703114 | 4_1:-43129204 | Msa0548820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATAAATAATATTTTTTTTA+AGG | + | chr4_1:43127729-43127748 | None:intergenic | 0.0% |
!! | AAAAATAATTAACAAGATAA+CGG | + | chr4_1:43125793-43125812 | None:intergenic | 10.0% |
!! | TTCTTTCAAAAAAAAAAAAA+AGG | + | chr4_1:43126046-43126065 | None:intergenic | 10.0% |
!! | AAAACTTTCAAAAAAAATAA+TGG | + | chr4_1:43126594-43126613 | None:intergenic | 10.0% |
!!! | TTTTTGAAAGTTTTATTTTT+AGG | - | chr4_1:43126600-43126619 | Msa0548820:intron | 10.0% |
!!! | CATAAAATAAGATTTTAATT+AGG | + | chr4_1:43126655-43126674 | None:intergenic | 10.0% |
!! | TTTAATTAATGTAAAATAAG+TGG | + | chr4_1:43126912-43126931 | None:intergenic | 10.0% |
!!! | TTTTGTATTTGATATTTAAT+TGG | + | chr4_1:43127270-43127289 | None:intergenic | 10.0% |
!!! | AATTTTTGACAAAAATAAAA+GGG | + | chr4_1:43128656-43128675 | None:intergenic | 10.0% |
!!! | TAATTTTTGACAAAAATAAA+AGG | + | chr4_1:43128657-43128676 | None:intergenic | 10.0% |
!! | AAATTTGTATATAATGAGTT+TGG | + | chr4_1:43126000-43126019 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTGAAAGAAAGT+TGG | - | chr4_1:43126049-43126068 | Msa0548820:intron | 15.0% |
!!! | AAGTTGTATTTTTTTTTTGA+AGG | - | chr4_1:43126969-43126988 | Msa0548820:intron | 15.0% |
!! | ATATCTTAATAATTATGCAT+AGG | + | chr4_1:43127207-43127226 | None:intergenic | 15.0% |
!! | AATCTTCTTCAAAATAAAAT+TGG | - | chr4_1:43127314-43127333 | Msa0548820:intron | 15.0% |
!! | TTATAAACAATATTAAGAGT+GGG | + | chr4_1:43127703-43127722 | None:intergenic | 15.0% |
!! | TTTATAAACAATATTAAGAG+TGG | + | chr4_1:43127704-43127723 | None:intergenic | 15.0% |
!!! | CTTTTAAATGCTTTTTTTTT+TGG | - | chr4_1:43128278-43128297 | Msa0548820:intron | 15.0% |
!!! | ATTTTTGACAAAAATAAAAG+GGG | + | chr4_1:43128655-43128674 | None:intergenic | 15.0% |
!!! | ACAACTTATCATTTTTTTTA+GGG | + | chr4_1:43128725-43128744 | None:intergenic | 15.0% |
!! | ATATGTTTAATTATAGGTTT+AGG | + | chr4_1:43128922-43128941 | None:intergenic | 15.0% |
!! | ATTGCAATATGTTTAATTAT+AGG | + | chr4_1:43128928-43128947 | None:intergenic | 15.0% |
!!! | GTTTTTTAAAAATTAGCGAT+AGG | - | chr4_1:43126420-43126439 | Msa0548820:intron | 20.0% |
!! | GATTGACAATAATTCAAATT+TGG | + | chr4_1:43126476-43126495 | None:intergenic | 20.0% |
!! | AATTATTGTCAATCACAATT+AGG | - | chr4_1:43126482-43126501 | Msa0548820:intron | 20.0% |
!! | ATTATTGTCAATCACAATTA+GGG | - | chr4_1:43126483-43126502 | Msa0548820:intron | 20.0% |
!! | TAGCAAAACTAAACTTTAAA+AGG | - | chr4_1:43126517-43126536 | Msa0548820:intron | 20.0% |
!! | TAAAAATATAAGCCTATAAC+GGG | + | chr4_1:43126565-43126584 | None:intergenic | 20.0% |
!! | CTAAAAATATAAGCCTATAA+CGG | + | chr4_1:43126566-43126585 | None:intergenic | 20.0% |
!! | ATGTAATGTAATTGAAAATC+AGG | + | chr4_1:43126776-43126795 | None:intergenic | 20.0% |
!!! | ATAATAGTTTTAAGTCCTTT+AGG | - | chr4_1:43126830-43126849 | Msa0548820:intron | 20.0% |
!!! | TAATAGTTTTAAGTCCTTTA+GGG | - | chr4_1:43126831-43126850 | Msa0548820:intron | 20.0% |
!! | AATATGTAATGGTTCAATTT+CGG | + | chr4_1:43127087-43127106 | None:intergenic | 20.0% |
!! | TAAGAAATGAAAAGGATAAA+GGG | + | chr4_1:43127115-43127134 | None:intergenic | 20.0% |
!! | TTAAGAAATGAAAAGGATAA+AGG | + | chr4_1:43127116-43127135 | None:intergenic | 20.0% |
!! | TGTATTGTTAAGAAATGAAA+AGG | + | chr4_1:43127123-43127142 | None:intergenic | 20.0% |
!! | AATGGTTTGAAAGAAAAAAT+TGG | + | chr4_1:43127174-43127193 | None:intergenic | 20.0% |
!!! | AATTGGTTAAGTTTTATCTT+TGG | + | chr4_1:43127253-43127272 | None:intergenic | 20.0% |
!! | AAATAGTGTGTTAAAACTTA+GGG | + | chr4_1:43127489-43127508 | None:intergenic | 20.0% |
!! | AAAATAGTGTGTTAAAACTT+AGG | + | chr4_1:43127490-43127509 | None:intergenic | 20.0% |
!! | CTATATTTATTTAAGTAGCT+AGG | - | chr4_1:43127512-43127531 | Msa0548820:intron | 20.0% |
!!! | TCTTACTTTTGTTTTTTTGA+GGG | + | chr4_1:43127781-43127800 | None:intergenic | 20.0% |
!!! | AGACACATTTTCTTTTTTAT+GGG | - | chr4_1:43128196-43128215 | Msa0548820:intron | 20.0% |
!!! | AAATGTTGAAAAGTGTAATA+CGG | - | chr4_1:43128316-43128335 | Msa0548820:intron | 20.0% |
!! | ATATTATATTATACACCATC+CGG | + | chr4_1:43128559-43128578 | None:intergenic | 20.0% |
!! | ATATGGGATAAAATTATATG+AGG | + | chr4_1:43128632-43128651 | None:intergenic | 20.0% |
!!! | CACAACTTATCATTTTTTTT+AGG | + | chr4_1:43128726-43128745 | None:intergenic | 20.0% |
!!! | TTATTTCACAACATCAATTT+TGG | - | chr4_1:43128866-43128885 | Msa0548820:intron | 20.0% |
!!! | TCTTTTAATTTTCTATGAAG+TGG | + | chr4_1:43129092-43129111 | None:intergenic | 20.0% |
!! | AATAATTAACAAGATAACGG+AGG | + | chr4_1:43125790-43125809 | None:intergenic | 25.0% |
! | AGAAGCAAATAAATTCCTTT+AGG | - | chr4_1:43126224-43126243 | Msa0548820:intron | 25.0% |
!!! | CGTTATTGCTATTTTGTTTA+CGG | - | chr4_1:43126389-43126408 | Msa0548820:intron | 25.0% |
!! | CGTTATAGGCTTATATTTTT+AGG | - | chr4_1:43126564-43126583 | Msa0548820:intron | 25.0% |
! | TTCATTTATTGCTTCTTAAC+CGG | + | chr4_1:43126883-43126902 | None:intergenic | 25.0% |
! | TGAAATCACAAGAAAAAGAA+AGG | + | chr4_1:43127060-43127079 | None:intergenic | 25.0% |
!! | TTTCTTTTTCTTGTGATTTC+AGG | - | chr4_1:43127059-43127078 | Msa0548820:intron | 25.0% |
!!! | CAATACAATTTTTTTTCCTG+TGG | - | chr4_1:43127136-43127155 | Msa0548820:intron | 25.0% |
!! | TTTTCTTTCAAACCATTTCA+TGG | - | chr4_1:43127177-43127196 | Msa0548820:intron | 25.0% |
! | TAGCATGAGGAATAAAAAAA+TGG | - | chr4_1:43127548-43127567 | Msa0548820:intron | 25.0% |
!!! | AAGCATTTTCTTTTTTGAAG+GGG | + | chr4_1:43127615-43127634 | None:intergenic | 25.0% |
!!! | GAAGCATTTTCTTTTTTGAA+GGG | + | chr4_1:43127616-43127635 | None:intergenic | 25.0% |
!!! | AGAAGCATTTTCTTTTTTGA+AGG | + | chr4_1:43127617-43127636 | None:intergenic | 25.0% |
!!! | CTTACTTTTGTTTTTTTGAG+GGG | + | chr4_1:43127780-43127799 | None:intergenic | 25.0% |
!!! | CTCTTACTTTTGTTTTTTTG+AGG | + | chr4_1:43127782-43127801 | None:intergenic | 25.0% |
! | CTCAAAAAAACAAAAGTAAG+AGG | - | chr4_1:43127780-43127799 | Msa0548820:intron | 25.0% |
! | ACAAATACAAGTAAATTCAC+AGG | - | chr4_1:43128093-43128112 | Msa0548820:intron | 25.0% |
!!! | GAGACACATTTTCTTTTTTA+TGG | - | chr4_1:43128195-43128214 | Msa0548820:intron | 25.0% |
! | TAAGCAAAAATCCAATTTCT+AGG | - | chr4_1:43128438-43128457 | Msa0548820:intron | 25.0% |
! | AATTGAATGAACCTAGAAAT+TGG | + | chr4_1:43128452-43128471 | None:intergenic | 25.0% |
!! | TTTTTGCTTATATTAGTGAC+CGG | - | chr4_1:43128537-43128556 | Msa0548820:intron | 25.0% |
! | ACAAAAATAAAAGGGGATAT+GGG | + | chr4_1:43128648-43128667 | None:intergenic | 25.0% |
!!! | GTACAATATTGGCTTAATAA+GGG | + | chr4_1:43129057-43129076 | None:intergenic | 25.0% |
!!! | AGTACAATATTGGCTTAATA+AGG | + | chr4_1:43129058-43129077 | None:intergenic | 25.0% |
!! | TATATAGTGTTGAAATGAGA+AGG | + | chr4_1:43129129-43129148 | None:intergenic | 25.0% |
!! | CATTGATTCTCTTTGACAAT+TGG | - | chr4_1:43125467-43125486 | Msa0548820:CDS | 30.0% |
AAATTCGATAAGTATGGACA+TGG | + | chr4_1:43125542-43125561 | None:intergenic | 30.0% | |
CATACTTATCGAATTTCTCT+CGG | - | chr4_1:43125546-43125565 | Msa0548820:intron | 30.0% | |
ATACTTATCGAATTTCTCTC+GGG | - | chr4_1:43125547-43125566 | Msa0548820:intron | 30.0% | |
!!! | GATGTGGTTTTTTGAAAGAA+CGG | + | chr4_1:43125747-43125766 | None:intergenic | 30.0% |
! | TTTTAAGCAATTTCATCACC+TGG | + | chr4_1:43125901-43125920 | None:intergenic | 30.0% |
TTGCTTAAAATTCAGATGCA+TGG | - | chr4_1:43125911-43125930 | Msa0548820:intron | 30.0% | |
!! | AACAAGAGTATCAATACAAG+AGG | - | chr4_1:43126090-43126109 | Msa0548820:intron | 30.0% |
!! | ACAAGAGTATCAATACAAGA+GGG | - | chr4_1:43126091-43126110 | Msa0548820:intron | 30.0% |
AGAGGGAATATCAAAATAAG+TGG | - | chr4_1:43126108-43126127 | Msa0548820:intron | 30.0% | |
TTTACAGGCACAAATAAATG+TGG | + | chr4_1:43126179-43126198 | None:intergenic | 30.0% | |
TGGAATGATTAAGTGATATG+TGG | + | chr4_1:43126347-43126366 | None:intergenic | 30.0% | |
TTTAGTCTATTACCCGTTAT+AGG | - | chr4_1:43126550-43126569 | Msa0548820:intron | 30.0% | |
TGAAAATCAGGTTATATACG+AGG | + | chr4_1:43126764-43126783 | None:intergenic | 30.0% | |
GTGTATAGTTGTGTAAAGAA+AGG | + | chr4_1:43127028-43127047 | None:intergenic | 30.0% | |
TCACAAGAAAAAGAAAGGAA+AGG | + | chr4_1:43127055-43127074 | None:intergenic | 30.0% | |
AAAGGGATGTGAATATGTAA+TGG | + | chr4_1:43127098-43127117 | None:intergenic | 30.0% | |
TTGGTTCAAATAAAATCCAC+AGG | + | chr4_1:43127155-43127174 | None:intergenic | 30.0% | |
CTATTAATGTGATACAAGCA+TGG | + | chr4_1:43127343-43127362 | None:intergenic | 30.0% | |
!! | AAATGCTTCTGAAATAGTCT+TGG | - | chr4_1:43127627-43127646 | Msa0548820:intron | 30.0% |
AGCATGTCAATGTCAATTTA+CGG | - | chr4_1:43128022-43128041 | Msa0548820:intron | 30.0% | |
CAAACTACATAGAAGATAGA+AGG | + | chr4_1:43128176-43128195 | None:intergenic | 30.0% | |
GCTTTACTAATATTTGCACT+TGG | - | chr4_1:43128218-43128237 | Msa0548820:intron | 30.0% | |
!! | AGTTTGTTAGTCTAACTACT+AGG | + | chr4_1:43128260-43128279 | None:intergenic | 30.0% |
AAGACAAGTGCAAATAGTTT+CGG | + | chr4_1:43128396-43128415 | None:intergenic | 30.0% | |
TTTGCTTATATTAGTGACCA+GGG | + | chr4_1:43128426-43128445 | None:intergenic | 30.0% | |
! | TTTTGCTTATATTAGTGACC+AGG | + | chr4_1:43128538-43128557 | None:intergenic | 30.0% |
TATTGAATGAACCTAGAAAG+TGG | - | chr4_1:43128513-43128532 | Msa0548820:intron | 30.0% | |
TAAGCAAAAATCCACTTTCT+AGG | + | chr4_1:43128527-43128546 | None:intergenic | 30.0% | |
GACAAAAATAAAAGGGGATA+TGG | + | chr4_1:43128649-43128668 | None:intergenic | 30.0% | |
ACAATATATTCACAGTAGCA+TGG | - | chr4_1:43129160-43129179 | Msa0548820:CDS | 30.0% | |
! | TTGTTAGAGGATGATGATTT+TGG | + | chr4_1:43129203-43129222 | None:intergenic | 30.0% |
AAATCATCATCCTCTAACAA+CGG | - | chr4_1:43129203-43129222 | Msa0548820:CDS | 30.0% | |
! | TTGGTAGATGATGATGACTT+TGG | + | chr4_1:43125382-43125401 | None:intergenic | 35.0% |
TACCAATGACACTATGATGA+TGG | - | chr4_1:43125396-43125415 | Msa0548820:CDS | 35.0% | |
ACCAATGACACTATGATGAT+GGG | - | chr4_1:43125397-43125416 | Msa0548820:CDS | 35.0% | |
CGAGAGAAATTCGATAAGTA+TGG | + | chr4_1:43125548-43125567 | None:intergenic | 35.0% | |
CCAACATAACCAAATAAGCT+AGG | + | chr4_1:43125651-43125670 | None:intergenic | 35.0% | |
CCTAGCTTATTTGGTTATGT+TGG | - | chr4_1:43125648-43125667 | Msa0548820:intron | 35.0% | |
TCGAAATTCTCATCTTGATG+TGG | + | chr4_1:43125763-43125782 | None:intergenic | 35.0% | |
CAATTTCATCACCTGGAATT+TGG | + | chr4_1:43125894-43125913 | None:intergenic | 35.0% | |
TATTGGAGCAGCTACATTAT+CGG | + | chr4_1:43126143-43126162 | None:intergenic | 35.0% | |
ATAATGTAGCTGCTCCAATA+AGG | - | chr4_1:43126143-43126162 | Msa0548820:intron | 35.0% | |
TAATGTAGCTGCTCCAATAA+GGG | - | chr4_1:43126144-43126163 | Msa0548820:intron | 35.0% | |
GCAATATCATCTCAACCTAA+AGG | + | chr4_1:43126242-43126261 | None:intergenic | 35.0% | |
GCTAGGAATATTTCATGCTA+TGG | + | chr4_1:43126367-43126386 | None:intergenic | 35.0% | |
AAAATAGCAATAACGACGCT+AGG | + | chr4_1:43126384-43126403 | None:intergenic | 35.0% | |
!!! | TTTGGTCTTAGTTTTTGCTG+AGG | + | chr4_1:43126458-43126477 | None:intergenic | 35.0% |
ATTGTCAATCACAATTAGGG+TGG | - | chr4_1:43126486-43126505 | Msa0548820:intron | 35.0% | |
TCACAATTAGGGTGGAAATA+TGG | - | chr4_1:43126494-43126513 | Msa0548820:intron | 35.0% | |
! | TAACGGGTAATAGACTAAAG+TGG | + | chr4_1:43126549-43126568 | None:intergenic | 35.0% |
TTTAAGTAGCTAGGCGTTAA+TGG | - | chr4_1:43127521-43127540 | Msa0548820:intron | 35.0% | |
ATGTGAATTGTGCACTTCAA+AGG | + | chr4_1:43127973-43127992 | None:intergenic | 35.0% | |
ATGTCAATGTCAATTTACGG+AGG | - | chr4_1:43128025-43128044 | Msa0548820:intron | 35.0% | |
GAGGTAAATGCAAAGTTTAG+TGG | + | chr4_1:43128154-43128173 | None:intergenic | 35.0% | |
ACTACATAGAAGATAGAAGG+AGG | + | chr4_1:43128173-43128192 | None:intergenic | 35.0% | |
AGTCTAACTACTAGGTTACT+TGG | + | chr4_1:43128252-43128271 | None:intergenic | 35.0% | |
TGATATTATTTGCGAGAGTC+TGG | + | chr4_1:43128346-43128365 | None:intergenic | 35.0% | |
TTGCTTATATTAGTGACCAG+GGG | + | chr4_1:43128425-43128444 | None:intergenic | 35.0% | |
ACAAGTGTAAATCATGATCG+TGG | - | chr4_1:43128806-43128825 | Msa0548820:intron | 35.0% | |
GTACTAGCGTAGTACAATAT+TGG | + | chr4_1:43129068-43129087 | None:intergenic | 35.0% | |
ATGGATCATGACATGGATCA+TGG | - | chr4_1:43125343-43125362 | Msa0548820:CDS | 40.0% | |
TCATGACATGGATCATGGAA+TGG | - | chr4_1:43125348-43125367 | Msa0548820:CDS | 40.0% | |
ACCCATCATCATAGTGTCAT+TGG | + | chr4_1:43125401-43125420 | None:intergenic | 40.0% | |
TGATGCACATGACATTCTTC+TGG | - | chr4_1:43125434-43125453 | Msa0548820:CDS | 40.0% | |
GATGCACATGACATTCTTCT+GGG | - | chr4_1:43125435-43125454 | Msa0548820:CDS | 40.0% | |
ATGCACATGACATTCTTCTG+GGG | - | chr4_1:43125436-43125455 | Msa0548820:CDS | 40.0% | |
TACTTACCAGAATTACCAGC+AGG | + | chr4_1:43125493-43125512 | None:intergenic | 40.0% | |
TTGAACCGGGTTTAATGAAC+CGG | + | chr4_1:43125576-43125595 | None:intergenic | 40.0% | |
!! | CAAAAGTGTCTGAACTAGAC+CGG | + | chr4_1:43125611-43125630 | None:intergenic | 40.0% |
! | AGACACTTTTGCATGTCCTT+AGG | - | chr4_1:43125620-43125639 | Msa0548820:intron | 40.0% |
! | GACACTTTTGCATGTCCTTA+GGG | - | chr4_1:43125621-43125640 | Msa0548820:intron | 40.0% |
TTGGCACTCATGTCTTTCAA+TGG | - | chr4_1:43125667-43125686 | Msa0548820:intron | 40.0% | |
CACTCATGTCTTTCAATGGT+GGG | - | chr4_1:43125671-43125690 | Msa0548820:intron | 40.0% | |
ACTCATGTCTTTCAATGGTG+GGG | - | chr4_1:43125672-43125691 | Msa0548820:intron | 40.0% | |
! | ACTCTCAGACGAAGTTTTAC+AGG | + | chr4_1:43126194-43126213 | None:intergenic | 40.0% |
ATCGACATGTAGCTGTTACA+GGG | + | chr4_1:43126269-43126288 | None:intergenic | 40.0% | |
AATCGACATGTAGCTGTTAC+AGG | + | chr4_1:43126270-43126289 | None:intergenic | 40.0% | |
! | AGCTACATGTCGATTGTAGA+AGG | - | chr4_1:43126275-43126294 | Msa0548820:intron | 40.0% |
TGCATAGGCTTTCCATGAAA+TGG | + | chr4_1:43127192-43127211 | None:intergenic | 40.0% | |
! | ATAGTCTTGGCCATTGTTGT+AGG | - | chr4_1:43127640-43127659 | Msa0548820:intron | 40.0% |
! | GCTAGGGCATAAGTTTTTGT+CGG | - | chr4_1:43127662-43127681 | Msa0548820:intron | 40.0% |
TGCTTATATTAGTGACCAGG+GGG | + | chr4_1:43128424-43128443 | None:intergenic | 40.0% | |
TGCTTATATTAGTGACCGGA+TGG | - | chr4_1:43128541-43128560 | Msa0548820:intron | 40.0% | |
GACGTAATGTCACATGACAT+TGG | + | chr4_1:43128784-43128803 | None:intergenic | 40.0% | |
TAGCATGGATGAGATGTCAA+TGG | - | chr4_1:43129175-43129194 | Msa0548820:CDS | 40.0% | |
!!! | CATCTTTTGGCTCATCATCA+TGG | + | chr4_1:43129231-43129250 | None:intergenic | 40.0% |
ATGATGAGCCAAAAGATGCA+GGG | - | chr4_1:43129233-43129252 | Msa0548820:CDS | 40.0% | |
TGGTACACATGACATTCTTC+TGG | - | chr4_1:43129258-43129277 | Msa0548820:CDS | 40.0% | |
GGTACACATGACATTCTTCT+GGG | - | chr4_1:43129259-43129278 | Msa0548820:CDS | 40.0% | |
GTACACATGACATTCTTCTG+GGG | - | chr4_1:43129260-43129279 | Msa0548820:CDS | 40.0% | |
CATGGATCATGGAATGGCAA+TGG | - | chr4_1:43125354-43125373 | Msa0548820:CDS | 45.0% | |
! | AATTGGCCTGCTGGTAATTC+TGG | - | chr4_1:43125484-43125503 | Msa0548820:intron | 45.0% |
CATGGCGAAAACAAGGATCA+AGG | + | chr4_1:43125524-43125543 | None:intergenic | 45.0% | |
GTATGGACATGGCGAAAACA+AGG | + | chr4_1:43125531-43125550 | None:intergenic | 45.0% | |
TGAACCGGGTTTAATGAACC+GGG | + | chr4_1:43125575-43125594 | None:intergenic | 45.0% | |
! | CTTTTGCATGTCCTTAGGGT+TGG | - | chr4_1:43125625-43125644 | Msa0548820:intron | 45.0% |
AATAAGCTAGGCCAACCCTA+AGG | + | chr4_1:43125639-43125658 | None:intergenic | 45.0% | |
!! | TAGGGTTGGCCTAGCTTATT+TGG | - | chr4_1:43125639-43125658 | Msa0548820:intron | 45.0% |
GCACTCATGTCTTTCAATGG+TGG | - | chr4_1:43125670-43125689 | Msa0548820:intron | 45.0% | |
! | TTTCAATGGTGGGGTGTTCT+TGG | - | chr4_1:43125681-43125700 | Msa0548820:intron | 45.0% |
CTCTGTAGTGTCCAAATTCC+AGG | - | chr4_1:43125880-43125899 | Msa0548820:intron | 45.0% | |
CATGTAGCTGTTACAGGGTT+TGG | + | chr4_1:43126264-43126283 | None:intergenic | 45.0% | |
TTAGGGTAATGCTTCCCTCA+AGG | + | chr4_1:43127472-43127491 | None:intergenic | 45.0% | |
CGTTAATGGCATGTAGCATG+AGG | - | chr4_1:43127535-43127554 | Msa0548820:intron | 45.0% | |
TTGGCCATTGTTGTAGGCTA+GGG | - | chr4_1:43127646-43127665 | Msa0548820:intron | 45.0% | |
TATGCCCTAGCCTACAACAA+TGG | + | chr4_1:43127653-43127672 | None:intergenic | 45.0% | |
CATCATGGTACCGTTGTTAG+AGG | + | chr4_1:43129216-43129235 | None:intergenic | 45.0% | |
GATGATGAGCCAAAAGATGC+AGG | - | chr4_1:43129232-43129251 | Msa0548820:CDS | 45.0% | |
!! | CATGACATTCTTCTGGGGTA+AGG | - | chr4_1:43125441-43125460 | Msa0548820:CDS | 45.0% |
!!! | AATTGTTAATTTATTTTAAT+TGG | + | chr4_1:43127230-43127249 | None:intergenic | 5.0% |
!!! | TATTATTTATAATTTCATTT+TGG | - | chr4_1:43127738-43127757 | Msa0548820:intron | 5.0% |
!!! | ATAAATAAATATTTTTTTGA+AGG | + | chr4_1:43128968-43128987 | None:intergenic | 5.0% |
! | CTCTTTGACAATTGGCCTGC+TGG | - | chr4_1:43125475-43125494 | Msa0548820:intron | 50.0% |
GTGTTCTTGGTTGCTGTGCT+TGG | - | chr4_1:43125694-43125713 | Msa0548820:intron | 50.0% | |
CTGTGCTTGGTCATGCTGTT+GGG | - | chr4_1:43125707-43125726 | Msa0548820:intron | 50.0% | |
GTGGTTGCTCACACCCTTAT+TGG | + | chr4_1:43126160-43126179 | None:intergenic | 50.0% | |
!! | GAAGGCATCTATCGTCGTCT+TGG | - | chr4_1:43126293-43126312 | Msa0548820:intron | 50.0% |
!! | TCCTTTAGGGTGCTGCTAAC+CGG | - | chr4_1:43126844-43126863 | Msa0548820:intron | 50.0% |
CTCCTTAACCAGTGCCTTGA+GGG | - | chr4_1:43127455-43127474 | Msa0548820:intron | 50.0% | |
!! | TTCCCTCAAGGCACTGGTTA+AGG | + | chr4_1:43127460-43127479 | None:intergenic | 50.0% |
TAATGCTTCCCTCAAGGCAC+TGG | + | chr4_1:43127466-43127485 | None:intergenic | 50.0% | |
CTTGGCCATTGTTGTAGGCT+AGG | - | chr4_1:43127645-43127664 | Msa0548820:intron | 50.0% | |
CACTTGTCTTATACACCCCC+TGG | - | chr4_1:43128406-43128425 | Msa0548820:intron | 50.0% | |
! | GTACCATGCCCTGCATCTTT+TGG | + | chr4_1:43129244-43129263 | None:intergenic | 50.0% |
TCGAATTTCTCTCGGGCACC+CGG | - | chr4_1:43125554-43125573 | Msa0548820:intron | 55.0% | |
GGCACCCGGTTCATTAAACC+CGG | - | chr4_1:43125568-43125587 | Msa0548820:intron | 55.0% | |
ACCCGGTTCAAACCCTGTTG+TGG | - | chr4_1:43125585-43125604 | Msa0548820:intron | 55.0% | |
GCCACAACAGGGTTTGAACC+GGG | + | chr4_1:43125589-43125608 | None:intergenic | 55.0% | |
GGCCACAACAGGGTTTGAAC+CGG | + | chr4_1:43125590-43125609 | None:intergenic | 55.0% | |
GGTTCAAACCCTGTTGTGGC+CGG | - | chr4_1:43125589-43125608 | Msa0548820:intron | 55.0% | |
GAACTAGACCGGCCACAACA+GGG | + | chr4_1:43125600-43125619 | None:intergenic | 55.0% | |
TGAACTAGACCGGCCACAAC+AGG | + | chr4_1:43125601-43125620 | None:intergenic | 55.0% | |
GCTGTGCTTGGTCATGCTGT+TGG | - | chr4_1:43125706-43125725 | Msa0548820:intron | 55.0% | |
ACCGGTTAGCAGCACCCTAA+AGG | + | chr4_1:43126848-43126867 | None:intergenic | 55.0% | |
TTGCTTCTTAACCGGTGCCC+CGG | + | chr4_1:43126875-43126894 | None:intergenic | 55.0% | |
GCTCCTTAACCAGTGCCTTG+AGG | - | chr4_1:43127454-43127473 | Msa0548820:intron | 55.0% | |
GAGCCAAAAGATGCAGGGCA+TGG | - | chr4_1:43129238-43129257 | Msa0548820:CDS | 55.0% | |
TGCTTCTTAACCGGTGCCCC+GGG | + | chr4_1:43126874-43126893 | None:intergenic | 60.0% | |
CTTCTTAACCGGTGCCCCGG+GGG | + | chr4_1:43126872-43126891 | None:intergenic | 65.0% | |
GCTTCTTAACCGGTGCCCCG+GGG | + | chr4_1:43126873-43126892 | None:intergenic | 65.0% | |
! | GTGCTGCTAACCGGTGCCCC+CGG | - | chr4_1:43126853-43126872 | Msa0548820:intron | 70.0% |
TGCTGCTAACCGGTGCCCCC+GGG | - | chr4_1:43126854-43126873 | Msa0548820:intron | 70.0% | |
GCTGCTAACCGGTGCCCCCG+GGG | - | chr4_1:43126855-43126874 | Msa0548820:intron | 75.0% | |
! | AACCGGTGCCCCCGGGGCAC+CGG | - | chr4_1:43126861-43126880 | Msa0548820:intron | 80.0% |
!! | AACCGGTGCCCCGGGGGCAC+CGG | + | chr4_1:43126866-43126885 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 43125343 | 43129319 | 43125343 | ID=Msa0548820;Name=Msa0548820 |
chr4_1 | mRNA | 43125343 | 43129319 | 43125343 | ID=Msa0548820-mRNA-1;Parent=Msa0548820;Name=Msa0548820-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|1|0|0|3|0|171 |
chr4_1 | exon | 43129157 | 43129319 | 43129157 | ID=Msa0548820-mRNA-1:exon:11200;Parent=Msa0548820-mRNA-1 |
chr4_1 | exon | 43128934 | 43129141 | 43128934 | ID=Msa0548820-mRNA-1:exon:11199;Parent=Msa0548820-mRNA-1 |
chr4_1 | exon | 43125343 | 43125487 | 43125343 | ID=Msa0548820-mRNA-1:exon:11198;Parent=Msa0548820-mRNA-1 |
chr4_1 | CDS | 43129157 | 43129319 | 43129157 | ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1 |
chr4_1 | CDS | 43128934 | 43129141 | 43128934 | ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1 |
chr4_1 | CDS | 43125343 | 43125487 | 43125343 | ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1 |
Gene Sequence |
Protein sequence |