AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548820 MtrunA17_Chr4g0032581 94.574 129 2 1 1 124 1 129 2.09e-82 240
Msa0548820 MtrunA17_Chr4g0032291 81.053 95 13 1 35 124 46 140 4.41e-46 148
Msa0548820 MtrunA17_Chr4g0032571 72.951 122 26 3 9 124 4 124 8.38e-46 147
Msa0548820 MtrunA17_Chr4g0032571 93.182 44 3 0 126 169 1 44 1.02e-13 64.7
Msa0548820 MtrunA17_Chr7g0240861 47.692 130 60 3 17 138 12 141 1.24e-28 103
Msa0548820 MtrunA17_Chr7g0240831 45.161 124 55 4 8 124 2 119 1.55e-27 100
Msa0548820 MtrunA17_Chr7g0240841 45.161 124 55 4 8 124 2 119 1.55e-27 100
Msa0548820 MtrunA17_Chr4g0008841 45.918 98 48 1 32 124 13 110 7.10e-26 96.3
Msa0548820 MtrunA17_Chr1g0150721 36.667 120 49 5 31 124 1 119 1.07e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548820 AT2G26975.1 48.299 147 57 6 5 140 1 139 7.23e-31 109
Msa0548820 AT5G59040.1 45.968 124 60 2 30 147 28 150 2.78e-27 100
Msa0548820 AT5G59030.1 42.500 160 74 3 1 142 1 160 4.74e-27 100
Msa0548820 AT3G46900.1 39.516 124 69 2 36 153 34 157 2.75e-22 87.8
Msa0548820 AT2G37925.1 39.806 103 54 2 30 124 28 130 1.54e-19 80.5
Msa0548820 AT5G20650.1 34.677 124 51 4 31 124 1 124 8.84e-11 57.4

Find 57 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTTGGCCTAGCTTATT+TGG 0.200727 4_1:-43129001 Msa0548820:CDS
TTTCAATGGTGGGGTGTTCT+TGG 0.291991 4_1:-43128959 Msa0548820:CDS
GTACCATGCCCTGCATCTTT+TGG 0.304326 4_1:+43125399 None:intergenic
TGGTACACATGACATTCTTC+TGG 0.307161 4_1:-43125382 Msa0548820:CDS
CATTGATTCTCTTTGACAAT+TGG 0.313757 4_1:-43129173 Msa0548820:CDS
TGATGCACATGACATTCTTC+TGG 0.316430 4_1:-43129206 Msa0548820:CDS
TTGTTAGAGGATGATGATTT+TGG 0.338915 4_1:+43125440 None:intergenic
CTCTTTGACAATTGGCCTGC+TGG 0.349526 4_1:-43129165 Msa0548820:CDS
CTGTGCTTGGTCATGCTGTT+GGG 0.361371 4_1:-43128933 Msa0548820:intron
CGAGAGAAATTCGATAAGTA+TGG 0.373371 4_1:+43129095 None:intergenic
AATTGGCCTGCTGGTAATTC+TGG 0.384528 4_1:-43129156 Msa0548820:intron
TGAACTAGACCGGCCACAAC+AGG 0.384941 4_1:+43129042 None:intergenic
GGCCACAACAGGGTTTGAAC+CGG 0.386419 4_1:+43129053 None:intergenic
GCTGTGCTTGGTCATGCTGT+TGG 0.390679 4_1:-43128934 Msa0548820:CDS
CACTCATGTCTTTCAATGGT+GGG 0.393883 4_1:-43128969 Msa0548820:CDS
CCTAGCTTATTTGGTTATGT+TGG 0.401335 4_1:-43128992 Msa0548820:CDS
TTGAACCGGGTTTAATGAAC+CGG 0.410106 4_1:+43129067 None:intergenic
GTGTTCTTGGTTGCTGTGCT+TGG 0.410298 4_1:-43128946 Msa0548820:CDS
CATCATGGTACCGTTGTTAG+AGG 0.416703 4_1:+43125427 None:intergenic
TCGAATTTCTCTCGGGCACC+CGG 0.420022 4_1:-43129086 Msa0548820:CDS
ACCCATCATCATAGTGTCAT+TGG 0.428445 4_1:+43129242 None:intergenic
TACCAATGACACTATGATGA+TGG 0.457064 4_1:-43129244 Msa0548820:CDS
CATACTTATCGAATTTCTCT+CGG 0.467194 4_1:-43129094 Msa0548820:CDS
GGTACACATGACATTCTTCT+GGG 0.468931 4_1:-43125381 Msa0548820:CDS
GATGCACATGACATTCTTCT+GGG 0.480501 4_1:-43129205 Msa0548820:CDS
GATGATGAGCCAAAAGATGC+AGG 0.482603 4_1:-43125408 Msa0548820:CDS
GCACTCATGTCTTTCAATGG+TGG 0.488475 4_1:-43128970 Msa0548820:CDS
CATGACATTCTTCTGGGGTA+AGG 0.504549 4_1:-43125375 Msa0548820:CDS
GCCACAACAGGGTTTGAACC+GGG 0.512994 4_1:+43129054 None:intergenic
TTGGCACTCATGTCTTTCAA+TGG 0.515628 4_1:-43128973 Msa0548820:CDS
GGTTCAAACCCTGTTGTGGC+CGG 0.535871 4_1:-43129051 Msa0548820:CDS
ATACTTATCGAATTTCTCTC+GGG 0.539271 4_1:-43129093 Msa0548820:CDS
TTGGTAGATGATGATGACTT+TGG 0.542496 4_1:+43129261 None:intergenic
ATGGATCATGACATGGATCA+TGG 0.546244 4_1:-43129297 Msa0548820:CDS
CCAACATAACCAAATAAGCT+AGG 0.548358 4_1:+43128992 None:intergenic
ACCCGGTTCAAACCCTGTTG+TGG 0.557595 4_1:-43129055 Msa0548820:CDS
CAAAAGTGTCTGAACTAGAC+CGG 0.563621 4_1:+43129032 None:intergenic
ACCAATGACACTATGATGAT+GGG 0.572192 4_1:-43129243 Msa0548820:CDS
GTATGGACATGGCGAAAACA+AGG 0.583113 4_1:+43129112 None:intergenic
CATGGCGAAAACAAGGATCA+AGG 0.583573 4_1:+43129119 None:intergenic
ACAATATATTCACAGTAGCA+TGG 0.584797 4_1:-43125480 Msa0548820:intron
GGCACCCGGTTCATTAAACC+CGG 0.591272 4_1:-43129072 Msa0548820:CDS
ACTCATGTCTTTCAATGGTG+GGG 0.593261 4_1:-43128968 Msa0548820:CDS
TAGCATGGATGAGATGTCAA+TGG 0.595537 4_1:-43125465 Msa0548820:CDS
TGAACCGGGTTTAATGAACC+GGG 0.596910 4_1:+43129068 None:intergenic
TACTTACCAGAATTACCAGC+AGG 0.597954 4_1:+43129150 None:intergenic
GAGCCAAAAGATGCAGGGCA+TGG 0.599077 4_1:-43125402 Msa0548820:CDS
AAATCATCATCCTCTAACAA+CGG 0.612187 4_1:-43125437 Msa0548820:CDS
ATGATGAGCCAAAAGATGCA+GGG 0.630505 4_1:-43125407 Msa0548820:CDS
TCATGACATGGATCATGGAA+TGG 0.630684 4_1:-43129292 Msa0548820:CDS
AATAAGCTAGGCCAACCCTA+AGG 0.634400 4_1:+43129004 None:intergenic
CATGGATCATGGAATGGCAA+TGG 0.655000 4_1:-43129286 Msa0548820:CDS
AAATTCGATAAGTATGGACA+TGG 0.659721 4_1:+43129101 None:intergenic
GAACTAGACCGGCCACAACA+GGG 0.667595 4_1:+43129043 None:intergenic
AAACAGCATGGATCATGACA+TGG 0.668548 4_1:-43129304 None:intergenic
GTACACATGACATTCTTCTG+GGG 0.674780 4_1:-43125380 Msa0548820:CDS
ATGCACATGACATTCTTCTG+GGG 0.703114 4_1:-43129204 Msa0548820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAATAATATTTTTTTTA+AGG + chr4_1:43127729-43127748 None:intergenic 0.0%
!! AAAAATAATTAACAAGATAA+CGG + chr4_1:43125793-43125812 None:intergenic 10.0%
!! TTCTTTCAAAAAAAAAAAAA+AGG + chr4_1:43126046-43126065 None:intergenic 10.0%
!! AAAACTTTCAAAAAAAATAA+TGG + chr4_1:43126594-43126613 None:intergenic 10.0%
!!! TTTTTGAAAGTTTTATTTTT+AGG - chr4_1:43126600-43126619 Msa0548820:intron 10.0%
!!! CATAAAATAAGATTTTAATT+AGG + chr4_1:43126655-43126674 None:intergenic 10.0%
!! TTTAATTAATGTAAAATAAG+TGG + chr4_1:43126912-43126931 None:intergenic 10.0%
!!! TTTTGTATTTGATATTTAAT+TGG + chr4_1:43127270-43127289 None:intergenic 10.0%
!!! AATTTTTGACAAAAATAAAA+GGG + chr4_1:43128656-43128675 None:intergenic 10.0%
!!! TAATTTTTGACAAAAATAAA+AGG + chr4_1:43128657-43128676 None:intergenic 10.0%
!! AAATTTGTATATAATGAGTT+TGG + chr4_1:43126000-43126019 None:intergenic 15.0%
!!! TTTTTTTTTTGAAAGAAAGT+TGG - chr4_1:43126049-43126068 Msa0548820:intron 15.0%
!!! AAGTTGTATTTTTTTTTTGA+AGG - chr4_1:43126969-43126988 Msa0548820:intron 15.0%
!! ATATCTTAATAATTATGCAT+AGG + chr4_1:43127207-43127226 None:intergenic 15.0%
!! AATCTTCTTCAAAATAAAAT+TGG - chr4_1:43127314-43127333 Msa0548820:intron 15.0%
!! TTATAAACAATATTAAGAGT+GGG + chr4_1:43127703-43127722 None:intergenic 15.0%
!! TTTATAAACAATATTAAGAG+TGG + chr4_1:43127704-43127723 None:intergenic 15.0%
!!! CTTTTAAATGCTTTTTTTTT+TGG - chr4_1:43128278-43128297 Msa0548820:intron 15.0%
!!! ATTTTTGACAAAAATAAAAG+GGG + chr4_1:43128655-43128674 None:intergenic 15.0%
!!! ACAACTTATCATTTTTTTTA+GGG + chr4_1:43128725-43128744 None:intergenic 15.0%
!! ATATGTTTAATTATAGGTTT+AGG + chr4_1:43128922-43128941 None:intergenic 15.0%
!! ATTGCAATATGTTTAATTAT+AGG + chr4_1:43128928-43128947 None:intergenic 15.0%
!!! GTTTTTTAAAAATTAGCGAT+AGG - chr4_1:43126420-43126439 Msa0548820:intron 20.0%
!! GATTGACAATAATTCAAATT+TGG + chr4_1:43126476-43126495 None:intergenic 20.0%
!! AATTATTGTCAATCACAATT+AGG - chr4_1:43126482-43126501 Msa0548820:intron 20.0%
!! ATTATTGTCAATCACAATTA+GGG - chr4_1:43126483-43126502 Msa0548820:intron 20.0%
!! TAGCAAAACTAAACTTTAAA+AGG - chr4_1:43126517-43126536 Msa0548820:intron 20.0%
!! TAAAAATATAAGCCTATAAC+GGG + chr4_1:43126565-43126584 None:intergenic 20.0%
!! CTAAAAATATAAGCCTATAA+CGG + chr4_1:43126566-43126585 None:intergenic 20.0%
!! ATGTAATGTAATTGAAAATC+AGG + chr4_1:43126776-43126795 None:intergenic 20.0%
!!! ATAATAGTTTTAAGTCCTTT+AGG - chr4_1:43126830-43126849 Msa0548820:intron 20.0%
!!! TAATAGTTTTAAGTCCTTTA+GGG - chr4_1:43126831-43126850 Msa0548820:intron 20.0%
!! AATATGTAATGGTTCAATTT+CGG + chr4_1:43127087-43127106 None:intergenic 20.0%
!! TAAGAAATGAAAAGGATAAA+GGG + chr4_1:43127115-43127134 None:intergenic 20.0%
!! TTAAGAAATGAAAAGGATAA+AGG + chr4_1:43127116-43127135 None:intergenic 20.0%
!! TGTATTGTTAAGAAATGAAA+AGG + chr4_1:43127123-43127142 None:intergenic 20.0%
!! AATGGTTTGAAAGAAAAAAT+TGG + chr4_1:43127174-43127193 None:intergenic 20.0%
!!! AATTGGTTAAGTTTTATCTT+TGG + chr4_1:43127253-43127272 None:intergenic 20.0%
!! AAATAGTGTGTTAAAACTTA+GGG + chr4_1:43127489-43127508 None:intergenic 20.0%
!! AAAATAGTGTGTTAAAACTT+AGG + chr4_1:43127490-43127509 None:intergenic 20.0%
!! CTATATTTATTTAAGTAGCT+AGG - chr4_1:43127512-43127531 Msa0548820:intron 20.0%
!!! TCTTACTTTTGTTTTTTTGA+GGG + chr4_1:43127781-43127800 None:intergenic 20.0%
!!! AGACACATTTTCTTTTTTAT+GGG - chr4_1:43128196-43128215 Msa0548820:intron 20.0%
!!! AAATGTTGAAAAGTGTAATA+CGG - chr4_1:43128316-43128335 Msa0548820:intron 20.0%
!! ATATTATATTATACACCATC+CGG + chr4_1:43128559-43128578 None:intergenic 20.0%
!! ATATGGGATAAAATTATATG+AGG + chr4_1:43128632-43128651 None:intergenic 20.0%
!!! CACAACTTATCATTTTTTTT+AGG + chr4_1:43128726-43128745 None:intergenic 20.0%
!!! TTATTTCACAACATCAATTT+TGG - chr4_1:43128866-43128885 Msa0548820:intron 20.0%
!!! TCTTTTAATTTTCTATGAAG+TGG + chr4_1:43129092-43129111 None:intergenic 20.0%
!! AATAATTAACAAGATAACGG+AGG + chr4_1:43125790-43125809 None:intergenic 25.0%
! AGAAGCAAATAAATTCCTTT+AGG - chr4_1:43126224-43126243 Msa0548820:intron 25.0%
!!! CGTTATTGCTATTTTGTTTA+CGG - chr4_1:43126389-43126408 Msa0548820:intron 25.0%
!! CGTTATAGGCTTATATTTTT+AGG - chr4_1:43126564-43126583 Msa0548820:intron 25.0%
! TTCATTTATTGCTTCTTAAC+CGG + chr4_1:43126883-43126902 None:intergenic 25.0%
! TGAAATCACAAGAAAAAGAA+AGG + chr4_1:43127060-43127079 None:intergenic 25.0%
!! TTTCTTTTTCTTGTGATTTC+AGG - chr4_1:43127059-43127078 Msa0548820:intron 25.0%
!!! CAATACAATTTTTTTTCCTG+TGG - chr4_1:43127136-43127155 Msa0548820:intron 25.0%
!! TTTTCTTTCAAACCATTTCA+TGG - chr4_1:43127177-43127196 Msa0548820:intron 25.0%
! TAGCATGAGGAATAAAAAAA+TGG - chr4_1:43127548-43127567 Msa0548820:intron 25.0%
!!! AAGCATTTTCTTTTTTGAAG+GGG + chr4_1:43127615-43127634 None:intergenic 25.0%
!!! GAAGCATTTTCTTTTTTGAA+GGG + chr4_1:43127616-43127635 None:intergenic 25.0%
!!! AGAAGCATTTTCTTTTTTGA+AGG + chr4_1:43127617-43127636 None:intergenic 25.0%
!!! CTTACTTTTGTTTTTTTGAG+GGG + chr4_1:43127780-43127799 None:intergenic 25.0%
!!! CTCTTACTTTTGTTTTTTTG+AGG + chr4_1:43127782-43127801 None:intergenic 25.0%
! CTCAAAAAAACAAAAGTAAG+AGG - chr4_1:43127780-43127799 Msa0548820:intron 25.0%
! ACAAATACAAGTAAATTCAC+AGG - chr4_1:43128093-43128112 Msa0548820:intron 25.0%
!!! GAGACACATTTTCTTTTTTA+TGG - chr4_1:43128195-43128214 Msa0548820:intron 25.0%
! TAAGCAAAAATCCAATTTCT+AGG - chr4_1:43128438-43128457 Msa0548820:intron 25.0%
! AATTGAATGAACCTAGAAAT+TGG + chr4_1:43128452-43128471 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr4_1:43128537-43128556 Msa0548820:intron 25.0%
! ACAAAAATAAAAGGGGATAT+GGG + chr4_1:43128648-43128667 None:intergenic 25.0%
!!! GTACAATATTGGCTTAATAA+GGG + chr4_1:43129057-43129076 None:intergenic 25.0%
!!! AGTACAATATTGGCTTAATA+AGG + chr4_1:43129058-43129077 None:intergenic 25.0%
!! TATATAGTGTTGAAATGAGA+AGG + chr4_1:43129129-43129148 None:intergenic 25.0%
!! CATTGATTCTCTTTGACAAT+TGG - chr4_1:43125467-43125486 Msa0548820:CDS 30.0%
AAATTCGATAAGTATGGACA+TGG + chr4_1:43125542-43125561 None:intergenic 30.0%
CATACTTATCGAATTTCTCT+CGG - chr4_1:43125546-43125565 Msa0548820:intron 30.0%
ATACTTATCGAATTTCTCTC+GGG - chr4_1:43125547-43125566 Msa0548820:intron 30.0%
!!! GATGTGGTTTTTTGAAAGAA+CGG + chr4_1:43125747-43125766 None:intergenic 30.0%
! TTTTAAGCAATTTCATCACC+TGG + chr4_1:43125901-43125920 None:intergenic 30.0%
TTGCTTAAAATTCAGATGCA+TGG - chr4_1:43125911-43125930 Msa0548820:intron 30.0%
!! AACAAGAGTATCAATACAAG+AGG - chr4_1:43126090-43126109 Msa0548820:intron 30.0%
!! ACAAGAGTATCAATACAAGA+GGG - chr4_1:43126091-43126110 Msa0548820:intron 30.0%
AGAGGGAATATCAAAATAAG+TGG - chr4_1:43126108-43126127 Msa0548820:intron 30.0%
TTTACAGGCACAAATAAATG+TGG + chr4_1:43126179-43126198 None:intergenic 30.0%
TGGAATGATTAAGTGATATG+TGG + chr4_1:43126347-43126366 None:intergenic 30.0%
TTTAGTCTATTACCCGTTAT+AGG - chr4_1:43126550-43126569 Msa0548820:intron 30.0%
TGAAAATCAGGTTATATACG+AGG + chr4_1:43126764-43126783 None:intergenic 30.0%
GTGTATAGTTGTGTAAAGAA+AGG + chr4_1:43127028-43127047 None:intergenic 30.0%
TCACAAGAAAAAGAAAGGAA+AGG + chr4_1:43127055-43127074 None:intergenic 30.0%
AAAGGGATGTGAATATGTAA+TGG + chr4_1:43127098-43127117 None:intergenic 30.0%
TTGGTTCAAATAAAATCCAC+AGG + chr4_1:43127155-43127174 None:intergenic 30.0%
CTATTAATGTGATACAAGCA+TGG + chr4_1:43127343-43127362 None:intergenic 30.0%
!! AAATGCTTCTGAAATAGTCT+TGG - chr4_1:43127627-43127646 Msa0548820:intron 30.0%
AGCATGTCAATGTCAATTTA+CGG - chr4_1:43128022-43128041 Msa0548820:intron 30.0%
CAAACTACATAGAAGATAGA+AGG + chr4_1:43128176-43128195 None:intergenic 30.0%
GCTTTACTAATATTTGCACT+TGG - chr4_1:43128218-43128237 Msa0548820:intron 30.0%
!! AGTTTGTTAGTCTAACTACT+AGG + chr4_1:43128260-43128279 None:intergenic 30.0%
AAGACAAGTGCAAATAGTTT+CGG + chr4_1:43128396-43128415 None:intergenic 30.0%
TTTGCTTATATTAGTGACCA+GGG + chr4_1:43128426-43128445 None:intergenic 30.0%
! TTTTGCTTATATTAGTGACC+AGG + chr4_1:43128538-43128557 None:intergenic 30.0%
TATTGAATGAACCTAGAAAG+TGG - chr4_1:43128513-43128532 Msa0548820:intron 30.0%
TAAGCAAAAATCCACTTTCT+AGG + chr4_1:43128527-43128546 None:intergenic 30.0%
GACAAAAATAAAAGGGGATA+TGG + chr4_1:43128649-43128668 None:intergenic 30.0%
ACAATATATTCACAGTAGCA+TGG - chr4_1:43129160-43129179 Msa0548820:CDS 30.0%
! TTGTTAGAGGATGATGATTT+TGG + chr4_1:43129203-43129222 None:intergenic 30.0%
AAATCATCATCCTCTAACAA+CGG - chr4_1:43129203-43129222 Msa0548820:CDS 30.0%
! TTGGTAGATGATGATGACTT+TGG + chr4_1:43125382-43125401 None:intergenic 35.0%
TACCAATGACACTATGATGA+TGG - chr4_1:43125396-43125415 Msa0548820:CDS 35.0%
ACCAATGACACTATGATGAT+GGG - chr4_1:43125397-43125416 Msa0548820:CDS 35.0%
CGAGAGAAATTCGATAAGTA+TGG + chr4_1:43125548-43125567 None:intergenic 35.0%
CCAACATAACCAAATAAGCT+AGG + chr4_1:43125651-43125670 None:intergenic 35.0%
CCTAGCTTATTTGGTTATGT+TGG - chr4_1:43125648-43125667 Msa0548820:intron 35.0%
TCGAAATTCTCATCTTGATG+TGG + chr4_1:43125763-43125782 None:intergenic 35.0%
CAATTTCATCACCTGGAATT+TGG + chr4_1:43125894-43125913 None:intergenic 35.0%
TATTGGAGCAGCTACATTAT+CGG + chr4_1:43126143-43126162 None:intergenic 35.0%
ATAATGTAGCTGCTCCAATA+AGG - chr4_1:43126143-43126162 Msa0548820:intron 35.0%
TAATGTAGCTGCTCCAATAA+GGG - chr4_1:43126144-43126163 Msa0548820:intron 35.0%
GCAATATCATCTCAACCTAA+AGG + chr4_1:43126242-43126261 None:intergenic 35.0%
GCTAGGAATATTTCATGCTA+TGG + chr4_1:43126367-43126386 None:intergenic 35.0%
AAAATAGCAATAACGACGCT+AGG + chr4_1:43126384-43126403 None:intergenic 35.0%
!!! TTTGGTCTTAGTTTTTGCTG+AGG + chr4_1:43126458-43126477 None:intergenic 35.0%
ATTGTCAATCACAATTAGGG+TGG - chr4_1:43126486-43126505 Msa0548820:intron 35.0%
TCACAATTAGGGTGGAAATA+TGG - chr4_1:43126494-43126513 Msa0548820:intron 35.0%
! TAACGGGTAATAGACTAAAG+TGG + chr4_1:43126549-43126568 None:intergenic 35.0%
TTTAAGTAGCTAGGCGTTAA+TGG - chr4_1:43127521-43127540 Msa0548820:intron 35.0%
ATGTGAATTGTGCACTTCAA+AGG + chr4_1:43127973-43127992 None:intergenic 35.0%
ATGTCAATGTCAATTTACGG+AGG - chr4_1:43128025-43128044 Msa0548820:intron 35.0%
GAGGTAAATGCAAAGTTTAG+TGG + chr4_1:43128154-43128173 None:intergenic 35.0%
ACTACATAGAAGATAGAAGG+AGG + chr4_1:43128173-43128192 None:intergenic 35.0%
AGTCTAACTACTAGGTTACT+TGG + chr4_1:43128252-43128271 None:intergenic 35.0%
TGATATTATTTGCGAGAGTC+TGG + chr4_1:43128346-43128365 None:intergenic 35.0%
TTGCTTATATTAGTGACCAG+GGG + chr4_1:43128425-43128444 None:intergenic 35.0%
ACAAGTGTAAATCATGATCG+TGG - chr4_1:43128806-43128825 Msa0548820:intron 35.0%
GTACTAGCGTAGTACAATAT+TGG + chr4_1:43129068-43129087 None:intergenic 35.0%
ATGGATCATGACATGGATCA+TGG - chr4_1:43125343-43125362 Msa0548820:CDS 40.0%
TCATGACATGGATCATGGAA+TGG - chr4_1:43125348-43125367 Msa0548820:CDS 40.0%
ACCCATCATCATAGTGTCAT+TGG + chr4_1:43125401-43125420 None:intergenic 40.0%
TGATGCACATGACATTCTTC+TGG - chr4_1:43125434-43125453 Msa0548820:CDS 40.0%
GATGCACATGACATTCTTCT+GGG - chr4_1:43125435-43125454 Msa0548820:CDS 40.0%
ATGCACATGACATTCTTCTG+GGG - chr4_1:43125436-43125455 Msa0548820:CDS 40.0%
TACTTACCAGAATTACCAGC+AGG + chr4_1:43125493-43125512 None:intergenic 40.0%
TTGAACCGGGTTTAATGAAC+CGG + chr4_1:43125576-43125595 None:intergenic 40.0%
!! CAAAAGTGTCTGAACTAGAC+CGG + chr4_1:43125611-43125630 None:intergenic 40.0%
! AGACACTTTTGCATGTCCTT+AGG - chr4_1:43125620-43125639 Msa0548820:intron 40.0%
! GACACTTTTGCATGTCCTTA+GGG - chr4_1:43125621-43125640 Msa0548820:intron 40.0%
TTGGCACTCATGTCTTTCAA+TGG - chr4_1:43125667-43125686 Msa0548820:intron 40.0%
CACTCATGTCTTTCAATGGT+GGG - chr4_1:43125671-43125690 Msa0548820:intron 40.0%
ACTCATGTCTTTCAATGGTG+GGG - chr4_1:43125672-43125691 Msa0548820:intron 40.0%
! ACTCTCAGACGAAGTTTTAC+AGG + chr4_1:43126194-43126213 None:intergenic 40.0%
ATCGACATGTAGCTGTTACA+GGG + chr4_1:43126269-43126288 None:intergenic 40.0%
AATCGACATGTAGCTGTTAC+AGG + chr4_1:43126270-43126289 None:intergenic 40.0%
! AGCTACATGTCGATTGTAGA+AGG - chr4_1:43126275-43126294 Msa0548820:intron 40.0%
TGCATAGGCTTTCCATGAAA+TGG + chr4_1:43127192-43127211 None:intergenic 40.0%
! ATAGTCTTGGCCATTGTTGT+AGG - chr4_1:43127640-43127659 Msa0548820:intron 40.0%
! GCTAGGGCATAAGTTTTTGT+CGG - chr4_1:43127662-43127681 Msa0548820:intron 40.0%
TGCTTATATTAGTGACCAGG+GGG + chr4_1:43128424-43128443 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+TGG - chr4_1:43128541-43128560 Msa0548820:intron 40.0%
GACGTAATGTCACATGACAT+TGG + chr4_1:43128784-43128803 None:intergenic 40.0%
TAGCATGGATGAGATGTCAA+TGG - chr4_1:43129175-43129194 Msa0548820:CDS 40.0%
!!! CATCTTTTGGCTCATCATCA+TGG + chr4_1:43129231-43129250 None:intergenic 40.0%
ATGATGAGCCAAAAGATGCA+GGG - chr4_1:43129233-43129252 Msa0548820:CDS 40.0%
TGGTACACATGACATTCTTC+TGG - chr4_1:43129258-43129277 Msa0548820:CDS 40.0%
GGTACACATGACATTCTTCT+GGG - chr4_1:43129259-43129278 Msa0548820:CDS 40.0%
GTACACATGACATTCTTCTG+GGG - chr4_1:43129260-43129279 Msa0548820:CDS 40.0%
CATGGATCATGGAATGGCAA+TGG - chr4_1:43125354-43125373 Msa0548820:CDS 45.0%
! AATTGGCCTGCTGGTAATTC+TGG - chr4_1:43125484-43125503 Msa0548820:intron 45.0%
CATGGCGAAAACAAGGATCA+AGG + chr4_1:43125524-43125543 None:intergenic 45.0%
GTATGGACATGGCGAAAACA+AGG + chr4_1:43125531-43125550 None:intergenic 45.0%
TGAACCGGGTTTAATGAACC+GGG + chr4_1:43125575-43125594 None:intergenic 45.0%
! CTTTTGCATGTCCTTAGGGT+TGG - chr4_1:43125625-43125644 Msa0548820:intron 45.0%
AATAAGCTAGGCCAACCCTA+AGG + chr4_1:43125639-43125658 None:intergenic 45.0%
!! TAGGGTTGGCCTAGCTTATT+TGG - chr4_1:43125639-43125658 Msa0548820:intron 45.0%
GCACTCATGTCTTTCAATGG+TGG - chr4_1:43125670-43125689 Msa0548820:intron 45.0%
! TTTCAATGGTGGGGTGTTCT+TGG - chr4_1:43125681-43125700 Msa0548820:intron 45.0%
CTCTGTAGTGTCCAAATTCC+AGG - chr4_1:43125880-43125899 Msa0548820:intron 45.0%
CATGTAGCTGTTACAGGGTT+TGG + chr4_1:43126264-43126283 None:intergenic 45.0%
TTAGGGTAATGCTTCCCTCA+AGG + chr4_1:43127472-43127491 None:intergenic 45.0%
CGTTAATGGCATGTAGCATG+AGG - chr4_1:43127535-43127554 Msa0548820:intron 45.0%
TTGGCCATTGTTGTAGGCTA+GGG - chr4_1:43127646-43127665 Msa0548820:intron 45.0%
TATGCCCTAGCCTACAACAA+TGG + chr4_1:43127653-43127672 None:intergenic 45.0%
CATCATGGTACCGTTGTTAG+AGG + chr4_1:43129216-43129235 None:intergenic 45.0%
GATGATGAGCCAAAAGATGC+AGG - chr4_1:43129232-43129251 Msa0548820:CDS 45.0%
!! CATGACATTCTTCTGGGGTA+AGG - chr4_1:43125441-43125460 Msa0548820:CDS 45.0%
!!! AATTGTTAATTTATTTTAAT+TGG + chr4_1:43127230-43127249 None:intergenic 5.0%
!!! TATTATTTATAATTTCATTT+TGG - chr4_1:43127738-43127757 Msa0548820:intron 5.0%
!!! ATAAATAAATATTTTTTTGA+AGG + chr4_1:43128968-43128987 None:intergenic 5.0%
! CTCTTTGACAATTGGCCTGC+TGG - chr4_1:43125475-43125494 Msa0548820:intron 50.0%
GTGTTCTTGGTTGCTGTGCT+TGG - chr4_1:43125694-43125713 Msa0548820:intron 50.0%
CTGTGCTTGGTCATGCTGTT+GGG - chr4_1:43125707-43125726 Msa0548820:intron 50.0%
GTGGTTGCTCACACCCTTAT+TGG + chr4_1:43126160-43126179 None:intergenic 50.0%
!! GAAGGCATCTATCGTCGTCT+TGG - chr4_1:43126293-43126312 Msa0548820:intron 50.0%
!! TCCTTTAGGGTGCTGCTAAC+CGG - chr4_1:43126844-43126863 Msa0548820:intron 50.0%
CTCCTTAACCAGTGCCTTGA+GGG - chr4_1:43127455-43127474 Msa0548820:intron 50.0%
!! TTCCCTCAAGGCACTGGTTA+AGG + chr4_1:43127460-43127479 None:intergenic 50.0%
TAATGCTTCCCTCAAGGCAC+TGG + chr4_1:43127466-43127485 None:intergenic 50.0%
CTTGGCCATTGTTGTAGGCT+AGG - chr4_1:43127645-43127664 Msa0548820:intron 50.0%
CACTTGTCTTATACACCCCC+TGG - chr4_1:43128406-43128425 Msa0548820:intron 50.0%
! GTACCATGCCCTGCATCTTT+TGG + chr4_1:43129244-43129263 None:intergenic 50.0%
TCGAATTTCTCTCGGGCACC+CGG - chr4_1:43125554-43125573 Msa0548820:intron 55.0%
GGCACCCGGTTCATTAAACC+CGG - chr4_1:43125568-43125587 Msa0548820:intron 55.0%
ACCCGGTTCAAACCCTGTTG+TGG - chr4_1:43125585-43125604 Msa0548820:intron 55.0%
GCCACAACAGGGTTTGAACC+GGG + chr4_1:43125589-43125608 None:intergenic 55.0%
GGCCACAACAGGGTTTGAAC+CGG + chr4_1:43125590-43125609 None:intergenic 55.0%
GGTTCAAACCCTGTTGTGGC+CGG - chr4_1:43125589-43125608 Msa0548820:intron 55.0%
GAACTAGACCGGCCACAACA+GGG + chr4_1:43125600-43125619 None:intergenic 55.0%
TGAACTAGACCGGCCACAAC+AGG + chr4_1:43125601-43125620 None:intergenic 55.0%
GCTGTGCTTGGTCATGCTGT+TGG - chr4_1:43125706-43125725 Msa0548820:intron 55.0%
ACCGGTTAGCAGCACCCTAA+AGG + chr4_1:43126848-43126867 None:intergenic 55.0%
TTGCTTCTTAACCGGTGCCC+CGG + chr4_1:43126875-43126894 None:intergenic 55.0%
GCTCCTTAACCAGTGCCTTG+AGG - chr4_1:43127454-43127473 Msa0548820:intron 55.0%
GAGCCAAAAGATGCAGGGCA+TGG - chr4_1:43129238-43129257 Msa0548820:CDS 55.0%
TGCTTCTTAACCGGTGCCCC+GGG + chr4_1:43126874-43126893 None:intergenic 60.0%
CTTCTTAACCGGTGCCCCGG+GGG + chr4_1:43126872-43126891 None:intergenic 65.0%
GCTTCTTAACCGGTGCCCCG+GGG + chr4_1:43126873-43126892 None:intergenic 65.0%
! GTGCTGCTAACCGGTGCCCC+CGG - chr4_1:43126853-43126872 Msa0548820:intron 70.0%
TGCTGCTAACCGGTGCCCCC+GGG - chr4_1:43126854-43126873 Msa0548820:intron 70.0%
GCTGCTAACCGGTGCCCCCG+GGG - chr4_1:43126855-43126874 Msa0548820:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+CGG - chr4_1:43126861-43126880 Msa0548820:intron 80.0%
!! AACCGGTGCCCCGGGGGCAC+CGG + chr4_1:43126866-43126885 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 43125343 43129319 43125343 ID=Msa0548820;Name=Msa0548820
chr4_1 mRNA 43125343 43129319 43125343 ID=Msa0548820-mRNA-1;Parent=Msa0548820;Name=Msa0548820-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|1|0|0|3|0|171
chr4_1 exon 43129157 43129319 43129157 ID=Msa0548820-mRNA-1:exon:11200;Parent=Msa0548820-mRNA-1
chr4_1 exon 43128934 43129141 43128934 ID=Msa0548820-mRNA-1:exon:11199;Parent=Msa0548820-mRNA-1
chr4_1 exon 43125343 43125487 43125343 ID=Msa0548820-mRNA-1:exon:11198;Parent=Msa0548820-mRNA-1
chr4_1 CDS 43129157 43129319 43129157 ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1
chr4_1 CDS 43128934 43129141 43128934 ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1
chr4_1 CDS 43125343 43125487 43125343 ID=Msa0548820-mRNA-1:cds;Parent=Msa0548820-mRNA-1
Gene Sequence

>Msa0548820

ATGGATCATGACATGGATCATGGAATGGCAATGGCACCAAAGTCATCATCATCTACCAATGACACTATGATGATGGGTCAGATGCATGACATGATGCACATGACATTCTTCTGGGGTAAAGATGCATTGATTCTCTTTGACAATTGGCCTGCTGGTAATTCTGCCTTGATCCTTGTTTTCGCCATGTCCATACTTATCGAATTTCTCTCGGGCACCCGGTTCATTAAACCCGGTTCAAACCCTGTTGTGGCCGGTCTAGTTCAGACACTTTTGCATGTCCTTAGGGTTGGCCTAGCTTATTTGGTTATGTTGGCACTCATGTCTTTCAATGGTGGGGTGTTCTTGGTTGCTGTGCTTGGTCATGCTGTTGGTAGCATGGATGAGATGTCAATGGCACCAAAATCATCATCCTCTAACAACGGTACCATGATGATGAGCCAAAAGATGCAGGGCATGGTACACATGACATTCTTCTGGGGTAAGGATTCGTTAATTCTCTTTAACAATTGTTCATGA

Protein sequence

>Msa0548820

MDHDMDHGMAMAPKSSSSTNDTMMMGQMHDMMHMTFFWGKDALILFDNWPAGNSALILVFAMSILIEFLSGTRFIKPGSNPVVAGLVQTLLHVLRVGLAYLVMLALMSFNGGVFLVAVLGHAVGSMDEMSMAPKSSSSNNGTMMMSQKMQGMVHMTFFWGKDSLILFNNCS*