AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297650 MtrunA17_Chr2g0285871 98.643 221 3 0 1 221 1 221 2.06e-160 442
Msa0297650 MtrunA17_Chr4g0007031 98.190 221 4 0 1 221 1 221 2.49e-160 442
Msa0297650 MtrunA17_Chr5g0419971 98.190 221 4 0 1 221 1 221 2.49e-160 442
Msa0297650 MtrunA17_Chr5g0419981 98.190 221 4 0 1 221 1 221 2.49e-160 442
Msa0297650 MtrunA17_Chr4g0007051 97.738 221 5 0 1 221 1 221 9.91e-160 440
Msa0297650 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 4.77e-158 436
Msa0297650 MtrunA17_Chr1g0189841 79.279 222 45 1 1 221 1 222 2.13e-129 363
Msa0297650 MtrunA17_Chr6g0449771 77.523 218 47 2 4 221 5 220 1.88e-118 336
Msa0297650 MtrunA17_Chr6g0449751 77.027 222 48 3 1 221 1 220 2.92e-118 335
Msa0297650 MtrunA17_Chr6g0449731 77.419 217 47 2 4 220 5 219 6.63e-118 334
Msa0297650 MtrunA17_Chr6g0449761 75.576 217 52 1 1 217 1 216 6.78e-116 330
Msa0297650 MtrunA17_Chr6g0449781 63.927 219 76 3 3 221 4 219 7.83e-91 266
Msa0297650 MtrunA17_Chr6g0449791 61.538 208 80 0 1 208 1 208 3.75e-88 259
Msa0297650 MtrunA17_Chr1g0156131 58.986 217 78 3 1 215 1 208 3.46e-81 241
Msa0297650 MtrunA17_Chr2g0292831 60.000 200 70 4 19 215 19 211 6.35e-78 233
Msa0297650 MtrunA17_Chr2g0292901 57.534 219 82 5 1 215 1 212 7.44e-74 223
Msa0297650 MtrunA17_Chr2g0292861 63.584 173 57 4 47 215 7 177 1.77e-71 215
Msa0297650 MtrunA17_Chr2g0292841 63.006 173 58 4 47 215 7 177 1.21e-69 211
Msa0297650 MtrunA17_Chr1g0193671 46.948 213 106 3 5 215 6 213 5.99e-61 190
Msa0297650 MtrunA17_Chr1g0193421 46.500 200 100 3 18 215 20 214 8.31e-54 172
Msa0297650 MtrunA17_Chr7g0271211 47.959 196 95 3 22 215 20 210 3.48e-52 167
Msa0297650 MtrunA17_Chr5g0414971 44.670 197 101 4 22 215 27 218 7.85e-49 159
Msa0297650 MtrunA17_Chr2g0292911 65.000 120 37 3 47 163 7 124 3.68e-47 152
Msa0297650 MtrunA17_Chr1g0210761 41.346 208 90 7 19 215 20 206 8.35e-43 143
Msa0297650 MtrunA17_Chr2g0300561 44.149 188 96 4 28 213 23 203 9.69e-42 140
Msa0297650 MtrunA17_Chr1g0178711 37.104 221 127 5 2 215 5 220 2.75e-41 140
Msa0297650 MtrunA17_Chr2g0300581 37.559 213 116 5 4 214 7 204 6.41e-38 130
Msa0297650 MtrunA17_Chr2g0300591 37.736 212 115 5 4 213 7 203 7.45e-38 130
Msa0297650 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 2.46e-35 124
Msa0297650 MtrunA17_Chr8g0344021 40.609 197 97 5 1 190 1 184 9.06e-35 122
Msa0297650 MtrunA17_Chr8g0343911 39.303 201 113 5 16 214 9 202 2.96e-34 121
Msa0297650 MtrunA17_Chr8g0343934 39.227 181 97 5 1 179 1 170 1.71e-32 117
Msa0297650 MtrunA17_Chr3g0084531 38.860 193 108 5 7 197 3 187 1.76e-32 117
Msa0297650 MtrunA17_Chr2g0297231 37.915 211 115 6 1 206 1 200 3.67e-31 113
Msa0297650 MtrunA17_Chr2g0313961 37.441 211 116 6 1 206 1 200 8.83e-31 112
Msa0297650 MtrunA17_Chr8g0344051 41.341 179 93 4 1 176 1 170 1.41e-30 112
Msa0297650 MtrunA17_Chr2g0297241 36.967 211 117 6 1 206 1 200 1.43e-30 112
Msa0297650 MtrunA17_Chr8g0343954 35.417 192 113 5 26 215 22 204 1.25e-29 109
Msa0297650 MtrunA17_Chr8g0343961 33.641 217 129 6 1 215 1 204 1.21e-28 107
Msa0297650 MtrunA17_Chr3g0084511 38.636 176 98 5 24 197 19 186 1.22e-28 107
Msa0297650 MtrunA17_Chr3g0130241 38.202 178 104 3 4 179 71 244 1.51e-28 108
Msa0297650 MtrunA17_Chr2g0302171 39.106 179 96 5 1 177 1 168 1.85e-28 106
Msa0297650 MtrunA17_Chr2g0301611 37.430 179 99 5 1 177 1 168 2.33e-28 106
Msa0297650 MtrunA17_Chr3g0084521 36.816 201 108 7 1 197 1 186 3.20e-28 105
Msa0297650 MtrunA17_Chr2g0321601 33.180 217 119 7 2 214 7 201 4.61e-28 105
Msa0297650 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 3.07e-27 103
Msa0297650 MtrunA17_Chr4g0026191 34.562 217 115 7 3 214 9 203 3.65e-27 103
Msa0297650 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 9.67e-27 102
Msa0297650 MtrunA17_Chr4g0026201 36.000 200 102 6 20 214 25 203 9.69e-27 102
Msa0297650 MtrunA17_Chr5g0411961 33.810 210 125 5 1 206 1 200 4.12e-26 100
Msa0297650 MtrunA17_Chr2g0302541 38.172 186 103 5 26 206 22 200 5.72e-26 100
Msa0297650 MtrunA17_Chr8g0344031 34.562 217 129 6 1 215 1 206 1.67e-25 99.0
Msa0297650 MtrunA17_Chr8g0343921 33.493 209 128 6 7 213 1 200 3.27e-25 98.2
Msa0297650 MtrunA17_Chr8g0344041 34.906 212 120 6 1 206 5 204 3.96e-25 97.8
Msa0297650 MtrunA17_Chr4g0003361 35.780 218 115 8 2 215 4 200 1.19e-24 96.7
Msa0297650 MtrunA17_Chr7g0217811 36.559 186 106 5 26 206 22 200 7.57e-24 94.4
Msa0297650 MtrunA17_Chr4g0012651 36.559 186 106 5 26 206 22 200 1.28e-23 94.0
Msa0297650 MtrunA17_Chr2g0286171 31.963 219 133 7 1 215 1 207 6.51e-23 92.0
Msa0297650 MtrunA17_Chr3g0115141 34.946 186 105 6 27 206 26 201 1.86e-22 90.9
Msa0297650 MtrunA17_Chr2g0292881 67.241 58 18 1 93 150 1 57 4.34e-20 80.5
Msa0297650 MtrunA17_Chr3g0084551 34.634 205 112 9 1 202 1 186 8.68e-20 84.3
Msa0297650 MtrunA17_Chr3g0084501 38.393 112 60 4 1 110 1 105 6.65e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297650 AT3G05950.1 65.778 225 69 4 4 221 5 228 5.02e-97 282
Msa0297650 AT5G39150.1 63.303 218 77 2 1 215 1 218 6.17e-94 274
Msa0297650 AT5G39180.1 63.303 218 77 2 1 215 1 218 1.26e-93 273
Msa0297650 AT5G39120.1 64.455 211 72 2 7 215 9 218 2.12e-93 273
Msa0297650 AT5G39110.1 63.981 211 74 1 7 215 9 219 3.00e-92 270
Msa0297650 AT5G39160.1 63.927 219 74 3 1 215 1 218 3.81e-92 270
Msa0297650 AT5G39130.1 65.072 209 70 2 9 215 11 218 5.18e-92 269
Msa0297650 AT5G39190.1 63.927 219 74 3 1 215 1 218 5.47e-92 269
Msa0297650 AT4G14630.1 61.187 219 81 2 1 215 3 221 5.82e-88 259
Msa0297650 AT5G39160.3 61.644 219 75 3 1 215 1 214 2.28e-87 257
Msa0297650 AT3G04200.1 60.000 215 83 3 1 213 6 219 2.14e-84 250
Msa0297650 AT5G38910.1 60.909 220 79 4 1 215 1 218 7.03e-80 238
Msa0297650 AT5G39190.2 58.065 217 68 2 1 215 1 196 1.60e-79 237
Msa0297650 AT5G39160.2 57.604 217 69 2 1 215 1 196 4.24e-79 236
Msa0297650 AT5G38940.1 61.224 196 73 2 22 215 26 220 6.53e-78 233
Msa0297650 AT5G38930.1 62.121 198 72 2 20 215 24 220 8.77e-78 233
Msa0297650 AT5G38940.2 61.224 196 73 2 22 215 50 244 8.89e-78 234
Msa0297650 AT5G38960.1 60.396 202 76 3 17 215 21 221 2.53e-77 232
Msa0297650 AT3G04170.1 56.039 207 85 3 10 214 14 216 1.24e-74 225
Msa0297650 AT3G04190.1 55.721 201 86 2 15 213 19 218 1.22e-73 223
Msa0297650 AT3G04150.1 52.995 217 96 3 3 214 4 219 3.46e-72 219
Msa0297650 AT3G04150.2 50.218 229 97 3 3 214 4 232 1.83e-70 215
Msa0297650 AT3G04180.1 53.731 201 90 2 15 213 19 218 2.81e-70 214
Msa0297650 AT1G02335.1 46.970 198 98 3 20 215 22 214 6.89e-56 177
Msa0297650 AT5G38910.2 49.545 220 67 4 1 215 1 181 9.61e-56 176
Msa0297650 AT3G62020.1 45.622 217 109 5 2 215 4 214 1.07e-54 174
Msa0297650 AT1G09560.1 45.274 201 103 3 17 215 19 214 1.16e-52 169
Msa0297650 AT3G05930.1 46.798 203 99 4 3 202 5 201 4.85e-52 167
Msa0297650 AT5G26700.1 47.396 192 87 5 26 213 25 206 1.04e-50 164
Msa0297650 AT1G18970.1 44.500 200 102 4 18 215 25 217 6.57e-50 162
Msa0297650 AT1G18980.1 45.000 200 101 4 18 215 25 217 1.34e-48 159
Msa0297650 AT3G62020.2 47.222 180 89 3 39 215 9 185 2.31e-47 155
Msa0297650 AT1G10460.1 41.414 198 108 5 22 214 19 213 1.41e-43 146
Msa0297650 AT3G10080.1 39.901 203 113 5 17 215 21 218 1.73e-43 146
Msa0297650 AT3G10080.2 39.901 203 113 5 17 215 92 289 7.13e-43 146
Msa0297650 AT5G20630.1 40.952 210 112 6 1 208 1 200 1.13e-41 140
Msa0297650 AT5G61750.1 41.622 185 103 2 4 186 1 182 7.89e-40 136
Msa0297650 AT1G72610.1 40.000 190 105 6 26 213 19 201 4.27e-33 119
Msa0297650 AT1G74820.1 38.144 194 111 4 24 215 38 224 1.04e-32 118
Msa0297650 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.38e-18 78.2

Find 69 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAATTTGGTTTAATAA+TGG 0.252418 2_3:-51368362 Msa0297650:three_prime_UTR
TATATACATACCACCATCTT+TGG 0.255130 2_3:+51369275 None:intergenic
TTTCAATTGAATGTGGGATA+TGG 0.265965 2_3:-51368690 Msa0297650:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 2_3:-51369364 Msa0297650:CDS
TTACGTACACGGTTTACTTT+AGG 0.312191 2_3:-51368479 Msa0297650:three_prime_UTR
GTATTGTTATGATTTGAATT+TGG 0.322582 2_3:-51368373 Msa0297650:three_prime_UTR
TAACACACTCGGTATATCTT+TGG 0.328336 2_3:-51368901 Msa0297650:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 2_3:+51368563 None:intergenic
GAGACGATTGTTGTCTTGAT+TGG 0.345597 2_3:+51368770 None:intergenic
TGAAAATGAATAAGACCAAT+TGG 0.350439 2_3:+51368708 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.352953 2_3:-51369370 Msa0297650:CDS
TCTTCAGCTTTAACAAGCTC+GGG 0.388081 2_3:+51369011 None:intergenic
TTGAGAGCCCAAGGCGTTAG+AGG 0.390678 2_3:+51368959 None:intergenic
GAGTGCCTTCGAGTACTATA+AGG 0.397511 2_3:+51368814 None:intergenic
TACAATAATAATAAGTAGAG+AGG 0.404707 2_3:+51368431 None:intergenic
ATATACATACCACCATCTTT+GGG 0.405165 2_3:+51369276 None:intergenic
GGCAACGCTGTTGCTATTGC+TGG 0.409649 2_3:-51368669 Msa0297650:CDS
ATCTTCAGCTTTAACAAGCT+CGG 0.417068 2_3:+51369010 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 2_3:-51368723 Msa0297650:CDS
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 2_3:+51369315 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 2_3:-51368530 Msa0297650:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 2_3:-51368804 Msa0297650:CDS
TAATTAACATTCTAATGAAT+GGG 0.447059 2_3:+51368299 None:intergenic
ATCACCCTTGTTTAGCACTT+TGG 0.448300 2_3:+51368743 None:intergenic
AATAGTTGGTCTACGGTGAC+TGG 0.448660 2_3:+51368930 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 2_3:+51369314 None:intergenic
CCCTAGGGTGAATGTGAGGT+GGG 0.472883 2_3:+51368847 None:intergenic
GTCACCGTAGACCAACTATT+CGG 0.474963 2_3:-51368927 Msa0297650:CDS
GGGAATGCCTCTAACGCCTT+GGG 0.476287 2_3:-51368966 Msa0297650:CDS
TTTGCAACAGTGATAACTCC+TGG 0.481242 2_3:+51368630 None:intergenic
TAATTTGCAGTATTTGTGAA+TGG 0.482769 2_3:-51369050 Msa0297650:intron
TGATTGCAACACAAAAGTCT+TGG 0.490396 2_3:+51369304 None:intergenic
TGGGAATGCCTCTAACGCCT+TGG 0.492501 2_3:-51368967 Msa0297650:CDS
GAAAATGAATAAGACCAATT+GGG 0.506436 2_3:+51368709 None:intergenic
AATTTGCAGTATTTGTGAAT+GGG 0.515890 2_3:-51369049 Msa0297650:intron
ATAAGGATCTCTGTTCCCCT+AGG 0.521648 2_3:+51368831 None:intergenic
GTGTGTTAAGTCCGAATAGT+TGG 0.546999 2_3:+51368916 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.548128 2_3:+51368861 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 2_3:-51369288 Msa0297650:CDS
CCCACCTCACATTCACCCTA+GGG 0.554780 2_3:-51368847 Msa0297650:CDS
CCAAAGCCAAGATGCTAACA+AGG 0.556137 2_3:+51369364 None:intergenic
ACAATAATAATAAGTAGAGA+GGG 0.558687 2_3:+51368432 None:intergenic
CCCCTAGGGTGAATGTGAGG+TGG 0.562730 2_3:+51368846 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 2_3:+51369316 None:intergenic
TTGCAACAGTGATAACTCCT+GGG 0.567087 2_3:+51368631 None:intergenic
GAACCTCGTCGGAAATAAGC+GGG 0.573571 2_3:+51368589 None:intergenic
CTTCACCAAAGTGCTAAACA+AGG 0.580133 2_3:-51368748 Msa0297650:CDS
GTCATAAGCAAAGGCAAGAG+AGG 0.587461 2_3:+51369338 None:intergenic
AGAACCTCGTCGGAAATAAG+CGG 0.593140 2_3:+51368588 None:intergenic
TGGAGTCACTTGAGAGCCCA+AGG 0.593611 2_3:+51368950 None:intergenic
ACCCACCTCACATTCACCCT+AGG 0.594952 2_3:-51368848 Msa0297650:CDS
CTATTCGGACTTAACACACT+CGG 0.606951 2_3:-51368912 Msa0297650:CDS
GAAGAACATGATTACGTACA+CGG 0.610600 2_3:-51368490 Msa0297650:three_prime_UTR
AGCTTTGGTAAGAACCTCGT+CGG 0.612864 2_3:+51368578 None:intergenic
AAGTCCGAATAGTTGGTCTA+CGG 0.617492 2_3:+51368923 None:intergenic
TAAGGATCTCTGTTCCCCTA+GGG 0.621607 2_3:+51368832 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 2_3:-51369285 Msa0297650:intron
AGGGCTGGGGTCATAAGCAA+AGG 0.629845 2_3:+51369329 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.634245 2_3:+51369310 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 2_3:+51369277 None:intergenic
GTTCCCCTAGGGTGAATGTG+AGG 0.650118 2_3:+51368843 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 2_3:+51369309 None:intergenic
CTTCAGCTTTAACAAGCTCG+GGG 0.658116 2_3:+51369012 None:intergenic
TAGAGAGGGTTGATTGCACA+AGG 0.658554 2_3:+51368446 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 2_3:-51368819 Msa0297650:CDS
TTCACCAAAGTGCTAAACAA+GGG 0.675942 2_3:-51368747 Msa0297650:CDS
GGACTTAGCAGTCAAAACCC+AGG 0.692136 2_3:-51368648 Msa0297650:CDS
TGACCCGCTTATTTCCGACG+AGG 0.709948 2_3:-51368592 Msa0297650:CDS
CCACCTCACATTCACCCTAG+GGG 0.723455 2_3:-51368846 Msa0297650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTTACAAATATATTTTTA+TGG - chr2_3:51368526-51368545 Msa0297650:CDS 15.0%
!! ACCATAAAAATATATTTGTA+AGG + chr2_3:51368530-51368549 None:intergenic 15.0%
!!! ATATATAGAATCTTTTGTTT+TGG - chr2_3:51368562-51368581 Msa0297650:CDS 15.0%
!!! ATTTGAATTTGGTTTAATAA+TGG - chr2_3:51369359-51369378 Msa0297650:CDS 15.0%
!!! TCCTTACAAATATATTTTTA+TGG - chr2_3:51368526-51368545 Msa0297650:CDS 15.0%
!! ACCATAAAAATATATTTGTA+AGG + chr2_3:51368530-51368549 None:intergenic 15.0%
!!! ATATATAGAATCTTTTGTTT+TGG - chr2_3:51368562-51368581 Msa0297650:CDS 15.0%
!!! ATTTGAATTTGGTTTAATAA+TGG - chr2_3:51369359-51369378 Msa0297650:CDS 15.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr2_3:51368474-51368493 None:intergenic 20.0%
!!! TTCAGTGGTATAATTATTTT+AGG + chr2_3:51368620-51368639 None:intergenic 20.0%
!! TTATATCAAAGAAATTTCAG+TGG + chr2_3:51368635-51368654 None:intergenic 20.0%
!!! TATTCATTTTCAATTGAATG+TGG - chr2_3:51369024-51369043 Msa0297650:CDS 20.0%
!!! ATTCATTTTCAATTGAATGT+GGG - chr2_3:51369025-51369044 Msa0297650:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr2_3:51369292-51369311 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr2_3:51369293-51369312 None:intergenic 20.0%
!! GTATTGTTATGATTTGAATT+TGG - chr2_3:51369348-51369367 Msa0297650:CDS 20.0%
!! GTAATTAAGACTTAAAGTTA+AGG + chr2_3:51368474-51368493 None:intergenic 20.0%
!!! TTCAGTGGTATAATTATTTT+AGG + chr2_3:51368620-51368639 None:intergenic 20.0%
!! TTATATCAAAGAAATTTCAG+TGG + chr2_3:51368635-51368654 None:intergenic 20.0%
!!! TATTCATTTTCAATTGAATG+TGG - chr2_3:51369024-51369043 Msa0297650:CDS 20.0%
!!! ATTCATTTTCAATTGAATGT+GGG - chr2_3:51369025-51369044 Msa0297650:CDS 20.0%
!! ACAATAATAATAAGTAGAGA+GGG + chr2_3:51369292-51369311 None:intergenic 20.0%
!! TACAATAATAATAAGTAGAG+AGG + chr2_3:51369293-51369312 None:intergenic 20.0%
!! GTATTGTTATGATTTGAATT+TGG - chr2_3:51369348-51369367 Msa0297650:CDS 20.0%
! CAAAAGATTCTATATATACG+AGG + chr2_3:51368559-51368578 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr2_3:51368671-51368690 Msa0297650:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr2_3:51368672-51368691 Msa0297650:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr2_3:51369015-51369034 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr2_3:51369016-51369035 None:intergenic 25.0%
! CAAAAGATTCTATATATACG+AGG + chr2_3:51368559-51368578 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG - chr2_3:51368671-51368690 Msa0297650:CDS 25.0%
! AATTTGCAGTATTTGTGAAT+GGG - chr2_3:51368672-51368691 Msa0297650:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr2_3:51369015-51369034 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr2_3:51369016-51369035 None:intergenic 25.0%
ATATACATACCACCATCTTT+GGG + chr2_3:51368448-51368467 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr2_3:51368449-51368468 None:intergenic 30.0%
! TTTTGGTCCTTAGTGATTTA+TGG - chr2_3:51368579-51368598 Msa0297650:CDS 30.0%
!! TTTTTCAAACATGTTGAAGC+TGG - chr2_3:51368734-51368753 Msa0297650:CDS 30.0%
! TTTTCAAACATGTTGAAGCT+GGG - chr2_3:51368735-51368754 Msa0297650:CDS 30.0%
TTTCAATTGAATGTGGGATA+TGG - chr2_3:51369031-51369050 Msa0297650:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr2_3:51369191-51369210 Msa0297650:intron 30.0%
ATATACATACCACCATCTTT+GGG + chr2_3:51368448-51368467 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr2_3:51368449-51368468 None:intergenic 30.0%
! TTTTGGTCCTTAGTGATTTA+TGG - chr2_3:51368579-51368598 Msa0297650:CDS 30.0%
!! TTTTTCAAACATGTTGAAGC+TGG - chr2_3:51368734-51368753 Msa0297650:CDS 30.0%
! TTTTCAAACATGTTGAAGCT+GGG - chr2_3:51368735-51368754 Msa0297650:CDS 30.0%
TTTCAATTGAATGTGGGATA+TGG - chr2_3:51369031-51369050 Msa0297650:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr2_3:51369191-51369210 Msa0297650:intron 30.0%
ATACTTCCTTGTTAGCATCT+TGG - chr2_3:51368351-51368370 Msa0297650:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr2_3:51368420-51368439 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr2_3:51368447-51368466 None:intergenic 35.0%
AGCTGAACCATAAATCACTA+AGG + chr2_3:51368589-51368608 None:intergenic 35.0%
TAGTGATTTATGGTTCAGCT+AGG - chr2_3:51368589-51368608 Msa0297650:CDS 35.0%
! ATCTTCAGCTTTAACAAGCT+CGG + chr2_3:51368714-51368733 None:intergenic 35.0%
TAACACACTCGGTATATCTT+TGG - chr2_3:51368820-51368839 Msa0297650:CDS 35.0%
! TTCACCAAAGTGCTAAACAA+GGG - chr2_3:51368974-51368993 Msa0297650:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr2_3:51369153-51369172 Msa0297650:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr2_3:51369161-51369180 None:intergenic 35.0%
GAAGAACATGATTACGTACA+CGG - chr2_3:51369231-51369250 Msa0297650:intron 35.0%
TTACGTACACGGTTTACTTT+AGG - chr2_3:51369242-51369261 Msa0297650:intron 35.0%
ATACTTCCTTGTTAGCATCT+TGG - chr2_3:51368351-51368370 Msa0297650:three_prime_UTR 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr2_3:51368420-51368439 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr2_3:51368447-51368466 None:intergenic 35.0%
AGCTGAACCATAAATCACTA+AGG + chr2_3:51368589-51368608 None:intergenic 35.0%
TAGTGATTTATGGTTCAGCT+AGG - chr2_3:51368589-51368608 Msa0297650:CDS 35.0%
! ATCTTCAGCTTTAACAAGCT+CGG + chr2_3:51368714-51368733 None:intergenic 35.0%
TAACACACTCGGTATATCTT+TGG - chr2_3:51368820-51368839 Msa0297650:CDS 35.0%
! TTCACCAAAGTGCTAAACAA+GGG - chr2_3:51368974-51368993 Msa0297650:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr2_3:51369153-51369172 Msa0297650:intron 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr2_3:51369161-51369180 None:intergenic 35.0%
GAAGAACATGATTACGTACA+CGG - chr2_3:51369231-51369250 Msa0297650:intron 35.0%
TTACGTACACGGTTTACTTT+AGG - chr2_3:51369242-51369261 Msa0297650:intron 35.0%
CAACACAAAAGTCTTGGAGA+GGG + chr2_3:51368414-51368433 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGCTC+GGG + chr2_3:51368713-51368732 None:intergenic 40.0%
! AAGTCCGAATAGTTGGTCTA+CGG + chr2_3:51368801-51368820 None:intergenic 40.0%
GTGTGTTAAGTCCGAATAGT+TGG + chr2_3:51368808-51368827 None:intergenic 40.0%
CTATTCGGACTTAACACACT+CGG - chr2_3:51368809-51368828 Msa0297650:CDS 40.0%
!!! TCGCATTGATTTTGTGCCTA+AGG - chr2_3:51368844-51368863 Msa0297650:CDS 40.0%
!!! CGCATTGATTTTGTGCCTAA+GGG - chr2_3:51368845-51368864 Msa0297650:CDS 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr2_3:51368902-51368921 Msa0297650:CDS 40.0%
GAGACGATTGTTGTCTTGAT+TGG + chr2_3:51368954-51368973 None:intergenic 40.0%
! CTTCACCAAAGTGCTAAACA+AGG - chr2_3:51368973-51368992 Msa0297650:CDS 40.0%
! ATCACCCTTGTTTAGCACTT+TGG + chr2_3:51368981-51369000 None:intergenic 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr2_3:51368998-51369017 Msa0297650:CDS 40.0%
TTGCAACAGTGATAACTCCT+GGG + chr2_3:51369093-51369112 None:intergenic 40.0%
TTTGCAACAGTGATAACTCC+TGG + chr2_3:51369094-51369113 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr2_3:51368414-51368433 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGCTC+GGG + chr2_3:51368713-51368732 None:intergenic 40.0%
! AAGTCCGAATAGTTGGTCTA+CGG + chr2_3:51368801-51368820 None:intergenic 40.0%
GTGTGTTAAGTCCGAATAGT+TGG + chr2_3:51368808-51368827 None:intergenic 40.0%
CTATTCGGACTTAACACACT+CGG - chr2_3:51368809-51368828 Msa0297650:CDS 40.0%
!!! TCGCATTGATTTTGTGCCTA+AGG - chr2_3:51368844-51368863 Msa0297650:CDS 40.0%
!!! CGCATTGATTTTGTGCCTAA+GGG - chr2_3:51368845-51368864 Msa0297650:CDS 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr2_3:51368902-51368921 Msa0297650:CDS 40.0%
GAGACGATTGTTGTCTTGAT+TGG + chr2_3:51368954-51368973 None:intergenic 40.0%
! CTTCACCAAAGTGCTAAACA+AGG - chr2_3:51368973-51368992 Msa0297650:CDS 40.0%
! ATCACCCTTGTTTAGCACTT+TGG + chr2_3:51368981-51369000 None:intergenic 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr2_3:51368998-51369017 Msa0297650:CDS 40.0%
TTGCAACAGTGATAACTCCT+GGG + chr2_3:51369093-51369112 None:intergenic 40.0%
TTTGCAACAGTGATAACTCC+TGG + chr2_3:51369094-51369113 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG + chr2_3:51368360-51368379 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr2_3:51368357-51368376 Msa0297650:three_prime_UTR 45.0%
GTCATAAGCAAAGGCAAGAG+AGG + chr2_3:51368386-51368405 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr2_3:51368415-51368434 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr2_3:51368433-51368452 Msa0297650:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr2_3:51368436-51368455 Msa0297650:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGCTCG+GGG + chr2_3:51368712-51368731 None:intergenic 45.0%
! AATAGTTGGTCTACGGTGAC+TGG + chr2_3:51368794-51368813 None:intergenic 45.0%
GTCACCGTAGACCAACTATT+CGG - chr2_3:51368794-51368813 Msa0297650:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr2_3:51368863-51368882 None:intergenic 45.0%
TAAGGATCTCTGTTCCCCTA+GGG + chr2_3:51368892-51368911 None:intergenic 45.0%
ATAAGGATCTCTGTTCCCCT+AGG + chr2_3:51368893-51368912 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr2_3:51368910-51368929 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr2_3:51368917-51368936 Msa0297650:CDS 45.0%
AGAACCTCGTCGGAAATAAG+CGG + chr2_3:51369136-51369155 None:intergenic 45.0%
! AGCTTTGGTAAGAACCTCGT+CGG + chr2_3:51369146-51369165 None:intergenic 45.0%
! TAGAGAGGGTTGATTGCACA+AGG + chr2_3:51369278-51369297 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG + chr2_3:51368360-51368379 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr2_3:51368357-51368376 Msa0297650:three_prime_UTR 45.0%
GTCATAAGCAAAGGCAAGAG+AGG + chr2_3:51368386-51368405 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr2_3:51368415-51368434 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr2_3:51368433-51368452 Msa0297650:three_prime_UTR 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr2_3:51368436-51368455 Msa0297650:three_prime_UTR 45.0%
! CTTCAGCTTTAACAAGCTCG+GGG + chr2_3:51368712-51368731 None:intergenic 45.0%
! AATAGTTGGTCTACGGTGAC+TGG + chr2_3:51368794-51368813 None:intergenic 45.0%
GTCACCGTAGACCAACTATT+CGG - chr2_3:51368794-51368813 Msa0297650:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr2_3:51368863-51368882 None:intergenic 45.0%
TAAGGATCTCTGTTCCCCTA+GGG + chr2_3:51368892-51368911 None:intergenic 45.0%
ATAAGGATCTCTGTTCCCCT+AGG + chr2_3:51368893-51368912 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr2_3:51368910-51368929 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr2_3:51368917-51368936 Msa0297650:CDS 45.0%
AGAACCTCGTCGGAAATAAG+CGG + chr2_3:51369136-51369155 None:intergenic 45.0%
! AGCTTTGGTAAGAACCTCGT+CGG + chr2_3:51369146-51369165 None:intergenic 45.0%
! TAGAGAGGGTTGATTGCACA+AGG + chr2_3:51369278-51369297 None:intergenic 45.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr2_3:51368408-51368427 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr2_3:51368409-51368428 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr2_3:51368410-51368429 None:intergenic 50.0%
GGACTTAGCAGTCAAAACCC+AGG - chr2_3:51369073-51369092 Msa0297650:intron 50.0%
GAACCTCGTCGGAAATAAGC+GGG + chr2_3:51369135-51369154 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr2_3:51368408-51368427 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr2_3:51368409-51368428 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr2_3:51368410-51368429 None:intergenic 50.0%
GGACTTAGCAGTCAAAACCC+AGG - chr2_3:51369073-51369092 Msa0297650:intron 50.0%
GAACCTCGTCGGAAATAAGC+GGG + chr2_3:51369135-51369154 None:intergenic 50.0%
AGGGCTGGGGTCATAAGCAA+AGG + chr2_3:51368395-51368414 None:intergenic 55.0%
TGGGAATGCCTCTAACGCCT+TGG - chr2_3:51368754-51368773 Msa0297650:CDS 55.0%
GGGAATGCCTCTAACGCCTT+GGG - chr2_3:51368755-51368774 Msa0297650:CDS 55.0%
! TTGAGAGCCCAAGGCGTTAG+AGG + chr2_3:51368765-51368784 None:intergenic 55.0%
TGGAGTCACTTGAGAGCCCA+AGG + chr2_3:51368774-51368793 None:intergenic 55.0%
ACCCACCTCACATTCACCCT+AGG - chr2_3:51368873-51368892 Msa0297650:CDS 55.0%
CCCTAGGGTGAATGTGAGGT+GGG + chr2_3:51368877-51368896 None:intergenic 55.0%
CCCACCTCACATTCACCCTA+GGG - chr2_3:51368874-51368893 Msa0297650:CDS 55.0%
CCACCTCACATTCACCCTAG+GGG - chr2_3:51368875-51368894 Msa0297650:CDS 55.0%
GTTCCCCTAGGGTGAATGTG+AGG + chr2_3:51368881-51368900 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG - chr2_3:51369052-51369071 Msa0297650:intron 55.0%
TGACCCGCTTATTTCCGACG+AGG - chr2_3:51369129-51369148 Msa0297650:intron 55.0%
AGGGCTGGGGTCATAAGCAA+AGG + chr2_3:51368395-51368414 None:intergenic 55.0%
TGGGAATGCCTCTAACGCCT+TGG - chr2_3:51368754-51368773 Msa0297650:CDS 55.0%
GGGAATGCCTCTAACGCCTT+GGG - chr2_3:51368755-51368774 Msa0297650:CDS 55.0%
! TTGAGAGCCCAAGGCGTTAG+AGG + chr2_3:51368765-51368784 None:intergenic 55.0%
TGGAGTCACTTGAGAGCCCA+AGG + chr2_3:51368774-51368793 None:intergenic 55.0%
ACCCACCTCACATTCACCCT+AGG - chr2_3:51368873-51368892 Msa0297650:CDS 55.0%
CCCTAGGGTGAATGTGAGGT+GGG + chr2_3:51368877-51368896 None:intergenic 55.0%
CCCACCTCACATTCACCCTA+GGG - chr2_3:51368874-51368893 Msa0297650:CDS 55.0%
CCACCTCACATTCACCCTAG+GGG - chr2_3:51368875-51368894 Msa0297650:CDS 55.0%
GTTCCCCTAGGGTGAATGTG+AGG + chr2_3:51368881-51368900 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG - chr2_3:51369052-51369071 Msa0297650:intron 55.0%
TGACCCGCTTATTTCCGACG+AGG - chr2_3:51369129-51369148 Msa0297650:intron 55.0%
CCCCTAGGGTGAATGTGAGG+TGG + chr2_3:51368878-51368897 None:intergenic 60.0%
CCCCTAGGGTGAATGTGAGG+TGG + chr2_3:51368878-51368897 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 51368314 51369429 51368314 ID=Msa0297650;Name=Msa0297650
chr2_3 mRNA 51368314 51369429 51368314 ID=Msa0297650-mRNA-1;Parent=Msa0297650;Name=Msa0297650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=26|1|1|1|1|1|2|201|221
chr2_3 exon 51368314 51369062 51368314 ID=Msa0297650-mRNA-1:exon:16321;Parent=Msa0297650-mRNA-1
chr2_3 exon 51369286 51369429 51369286 ID=Msa0297650-mRNA-1:exon:16320;Parent=Msa0297650-mRNA-1
chr2_3 five_prime_UTR 51369404 51369429 51369404 ID=Msa0297650-mRNA-1:five_prime_utr;Parent=Msa0297650-mRNA-1
chr2_3 CDS 51369286 51369403 51369286 ID=Msa0297650-mRNA-1:cds;Parent=Msa0297650-mRNA-1
chr2_3 CDS 51368515 51369062 51368515 ID=Msa0297650-mRNA-1:cds;Parent=Msa0297650-mRNA-1
chr2_3 three_prime_UTR 51368314 51368514 51368314 ID=Msa0297650-mRNA-1:three_prime_utr;Parent=Msa0297650-mRNA-1
Gene Sequence

>Msa0297650

ATGAAGATTCTATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTTGCTTATGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTGAATGGGAAATTCTGTAAAGACCCCGAGCTTGTTAAAGCTGAAGATTTTTTCAAACATGTTGAAGCTGGGAATGCCTCTAACGCCTTGGGCTCTCAAGTGACTCCAGTCACCGTAGACCAACTATTCGGACTTAACACACTCGGTATATCTTTGGCTCGCATTGATTTTGTGCCTAAGGGTTTAAACCCACCTCACATTCACCCTAGGGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCACGTCCAATCAAGACAACAATCGTCTCTTCACCAAAGTGCTAAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAATTGAATGTGGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAACCCAGGAGTTATCACTGTTGCAAATGCTTTGTTTAAATCTGACCCGCTTATTTCCGACGAGGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0297650

MKILYFLVSILALASSLAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPELVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARIDFVPKGLNPPHIHPRGTEILIVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*