Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552630 | XP_003607208.1 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 3.75e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552630 | sp|B7FNA9|DRE2_MEDTR | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 4.69e-165 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552630 | G7JNG4 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 1.79e-162 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036540 | Msa0552630 | 0.805001 | 1.648107e-49 | -8.615850e-47 |
| Msa0098290 | Msa0552630 | 0.800609 | 1.330024e-48 | -8.615850e-47 |
| Msa0102140 | Msa0552630 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0138020 | Msa0552630 | 0.824821 | 6.557963e-54 | -8.615850e-47 |
| Msa0150230 | Msa0552630 | 0.802945 | 4.408326e-49 | -8.615850e-47 |
| Msa0189030 | Msa0552630 | 0.810495 | 1.120693e-50 | -8.615850e-47 |
| Msa0207030 | Msa0552630 | 0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0233370 | Msa0552630 | 0.805861 | 1.088049e-49 | -8.615850e-47 |
| Msa0366210 | Msa0552630 | 0.807074 | 6.035842e-50 | -8.615850e-47 |
| Msa0241140 | Msa0552630 | 0.811226 | 7.782261e-51 | -8.615850e-47 |
| Msa0309270 | Msa0552630 | 0.814507 | 1.487566e-51 | -8.615850e-47 |
| Msa0527540 | Msa0552630 | 0.808387 | 3.174890e-50 | -8.615850e-47 |
| Msa0552630 | Msa0558360 | 0.806017 | 1.008814e-49 | -8.615850e-47 |
| Msa0552630 | Msa0569960 | 0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa0552630 | Msa0654620 | 0.802034 | 6.795438e-49 | -8.615850e-47 |
| Msa0552630 | Msa0822500 | 0.809450 | 1.880549e-50 | -8.615850e-47 |
| Msa0552630 | Msa0894710 | 0.820664 | 6.085111e-53 | -8.615850e-47 |
| Msa0552630 | Msa0905750 | 0.818755 | 1.660716e-52 | -8.615850e-47 |
| Msa0552630 | Msa1071320 | 0.801659 | 8.110215e-49 | -8.615850e-47 |
| Msa0552630 | Msa1093100 | 0.821554 | 3.796328e-53 | -8.615850e-47 |
| Msa0552630 | Msa1107200 | 0.809973 | 1.452176e-50 | -8.615850e-47 |
| Msa0552630 | Msa1150780 | 0.808488 | 3.021597e-50 | -8.615850e-47 |
| Msa0552630 | Msa1158390 | 0.801873 | 7.333066e-49 | -8.615850e-47 |
| Msa0552630 | Msa1175200 | 0.815180 | 1.055118e-51 | -8.615850e-47 |
| Msa0552630 | Msa1207310 | 0.822658 | 2.105203e-53 | -8.615850e-47 |
| Msa0552630 | Msa1264420 | 0.825822 | 3.800803e-54 | -8.615850e-47 |
| Msa0552630 | Msa1265280 | 0.821049 | 4.964328e-53 | -8.615850e-47 |
| Msa0552630 | Msa1307180 | 0.832063 | 1.170648e-55 | -8.615850e-47 |
| Msa0552630 | Msa1316360 | 0.838167 | 3.376740e-57 | -8.615850e-47 |
| Msa0552630 | Msa1337480 | 0.822718 | 2.039485e-53 | -8.615850e-47 |
| Msa0552630 | Msa1346840 | 0.814512 | 1.483471e-51 | -8.615850e-47 |
| Msa0552630 | Msa1395730 | 0.804756 | 1.853721e-49 | -8.615850e-47 |
| Msa0552630 | Msa1412130 | 0.814960 | 1.180321e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552630 | MtrunA17_Chr4g0037921 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 3.45e-166 | 459 |
| Msa0552630 | MtrunA17_Chr4g0060301 | 87.059 | 255 | 7 | 1 | 1 | 229 | 2 | 256 | 5.39e-155 | 431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552630 | AT5G18400.3 | 51.812 | 276 | 90 | 5 | 1 | 238 | 2 | 272 | 1.09e-73 | 225 |
| Msa0552630 | AT5G18400.2 | 51.812 | 276 | 90 | 5 | 1 | 238 | 2 | 272 | 1.09e-73 | 225 |
| Msa0552630 | AT5G18400.1 | 52.788 | 269 | 84 | 5 | 8 | 238 | 6 | 269 | 1.36e-73 | 225 |
Find 68 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAAAACAAGTTATTAT+TGG | 0.250596 | 4_1:+49301839 | Msa0552630:CDS |
| TTTGGTCTACAGTGTGGGTT+AGG | 0.251749 | 4_1:+49304087 | Msa0552630:intron |
| GGGACTGCCTGCCTTCAAAA+TGG | 0.255879 | 4_1:+49304143 | Msa0552630:CDS |
| GTTATGTTATCGTTCGTTTA+AGG | 0.256165 | 4_1:+49304374 | Msa0552630:three_prime_UTR |
| TCCCAATCTGCTGTGGGTTC+AGG | 0.274662 | 4_1:+49301720 | Msa0552630:CDS |
| GTCTGCAGCAAGGAAGTTTC+CGG | 0.324492 | 4_1:-49304275 | None:intergenic |
| TCTTTACCAGATGGCAGTTC+AGG | 0.330853 | 4_1:-49302513 | None:intergenic |
| GAGGAGAAAGTGTTGAAGTT+AGG | 0.335111 | 4_1:+49302677 | Msa0552630:CDS |
| TGGCTGAATTTAAGATTTGT+AGG | 0.344827 | 4_1:-49304562 | None:intergenic |
| GACAACTAGTATATAATAAC+TGG | 0.358536 | 4_1:-49304446 | None:intergenic |
| AGATAGTAAGGGATTGTTAT+CGG | 0.361000 | 4_1:+49304352 | Msa0552630:three_prime_UTR |
| ACCTGAACCCACAGCAGATT+GGG | 0.367811 | 4_1:-49301721 | None:intergenic |
| AATAGAATTTATAGATAGTA+AGG | 0.371623 | 4_1:+49304340 | Msa0552630:three_prime_UTR |
| GTGGGTTAGGGGATGCGTTT+AGG | 0.373430 | 4_1:+49304100 | Msa0552630:CDS |
| CAATTACATGATTTATAGCT+TGG | 0.378337 | 4_1:-49304582 | None:intergenic |
| TCAAAATCAATTTGCACCTT+GGG | 0.380437 | 4_1:-49302438 | None:intergenic |
| TTGGTCTACAGTGTGGGTTA+GGG | 0.418067 | 4_1:+49304088 | Msa0552630:intron |
| ATCAAAATCAATTTGCACCT+TGG | 0.418194 | 4_1:-49302439 | None:intergenic |
| GCAACAGGGGATTGTGAAAT+CGG | 0.423300 | 4_1:+49302605 | Msa0552630:intron |
| AAGGCAGGCAGTCCCTTGTA+AGG | 0.430422 | 4_1:-49304135 | None:intergenic |
| GAAAACAAGTTATTATTGGC+AGG | 0.432138 | 4_1:+49301843 | Msa0552630:CDS |
| TGCTGTGGGTTCAGGTGATA+AGG | 0.434752 | 4_1:+49301728 | Msa0552630:CDS |
| GTGCAGTACCTGCCCTTACA+AGG | 0.441245 | 4_1:+49304122 | Msa0552630:CDS |
| GGTTGAGAAATTGGATCCTC+TGG | 0.453715 | 4_1:+49300702 | Msa0552630:CDS |
| TTAAGGTGTTTGATTTGATA+CGG | 0.458662 | 4_1:+49304391 | Msa0552630:three_prime_UTR |
| CACCTGAACCCACAGCAGAT+TGG | 0.467479 | 4_1:-49301722 | None:intergenic |
| TTTGATGCGATTAGAGAGCT+TGG | 0.471851 | 4_1:+49300670 | Msa0552630:CDS |
| GGACTGCCTGCCTTCAAAAT+GGG | 0.476612 | 4_1:+49304144 | Msa0552630:CDS |
| AAGAAACCTGAACTGCCATC+TGG | 0.477418 | 4_1:+49302507 | Msa0552630:CDS |
| CGAATAAGAGTTGTCCCACC+AGG | 0.491082 | 4_1:-49301690 | None:intergenic |
| ATTATGAAGTAGCTAAAGAG+AGG | 0.492726 | 4_1:-49304478 | None:intergenic |
| TGGTCTACAGTGTGGGTTAG+GGG | 0.497622 | 4_1:+49304089 | Msa0552630:intron |
| CAAATCCTCCCAATCTGCTG+TGG | 0.503823 | 4_1:+49301713 | Msa0552630:CDS |
| GCATCAAACACTTGACTGAC+AGG | 0.506089 | 4_1:-49300655 | None:intergenic |
| TTGATGCGATTAGAGAGCTT+GGG | 0.506545 | 4_1:+49300671 | Msa0552630:CDS |
| TGGTGCTGTGTTGGCATGTA+CGG | 0.526353 | 4_1:+49300618 | Msa0552630:CDS |
| TCTTGAGTCAGTTGGTCGAT+AGG | 0.526999 | 4_1:-49301648 | None:intergenic |
| ATTAGAGAGCTTGGGAATGA+GGG | 0.528876 | 4_1:+49300679 | Msa0552630:CDS |
| GATTAGAGAGCTTGGGAATG+AGG | 0.531987 | 4_1:+49300678 | Msa0552630:CDS |
| ATTCAGTTACATTAGTGCAC+TGG | 0.535943 | 4_1:-49304668 | None:intergenic |
| ATGTGGAAGGGCAGAAGAAG+AGG | 0.536094 | 4_1:+49302658 | Msa0552630:CDS |
| TGAGGACTTCTTGAGTCAGT+TGG | 0.543701 | 4_1:-49301656 | None:intergenic |
| CAGGATGCTGCAAAGATGTA+TGG | 0.549895 | 4_1:+49300598 | None:intergenic |
| TAATGTTGTAACCTTTGTCG+TGG | 0.556107 | 4_1:+49304308 | Msa0552630:three_prime_UTR |
| AGGCAGTCCCTTGTAAGGGC+AGG | 0.558512 | 4_1:-49304130 | None:intergenic |
| TGTAACCTTTGTCGTGGGAA+TGG | 0.562127 | 4_1:+49304314 | Msa0552630:three_prime_UTR |
| TGCCTTCAAAATGGGCGAGA+AGG | 0.566839 | 4_1:+49304152 | Msa0552630:CDS |
| AAATCCTCCCAATCTGCTGT+GGG | 0.570159 | 4_1:+49301714 | Msa0552630:CDS |
| ACACTGCCACAAGCTGATTG+AGG | 0.579233 | 4_1:-49302725 | None:intergenic |
| TGAAATCGGACCTACAAGAA+AGG | 0.582586 | 4_1:+49302619 | Msa0552630:CDS |
| ATAGAATTTATAGATAGTAA+GGG | 0.593569 | 4_1:+49304341 | Msa0552630:three_prime_UTR |
| GTCCTCAGAGTGTTAAAACC+TGG | 0.604470 | 4_1:+49301672 | Msa0552630:CDS |
| AGTAATCCTCAATCAGCTTG+TGG | 0.606583 | 4_1:+49302719 | Msa0552630:CDS |
| AATGTTGTAACCTTTGTCGT+GGG | 0.607211 | 4_1:+49304309 | Msa0552630:three_prime_UTR |
| AAAGATGTATGGTGCTGTGT+TGG | 0.610093 | 4_1:+49300609 | Msa0552630:CDS |
| GTATATAATAACTGGAAACT+CGG | 0.615069 | 4_1:-49304438 | None:intergenic |
| TGAACCCACAGCAGATTGGG+AGG | 0.622299 | 4_1:-49301718 | None:intergenic |
| TTATGCCATTCCCACGACAA+AGG | 0.623950 | 4_1:-49304319 | None:intergenic |
| CTCAGAGTGTTAAAACCTGG+TGG | 0.624416 | 4_1:+49301675 | Msa0552630:CDS |
| TGCAGTACCTGCCCTTACAA+GGG | 0.630912 | 4_1:+49304123 | Msa0552630:CDS |
| GGTTGTGAAAAGTTCACCCA+AGG | 0.638698 | 4_1:+49302422 | Msa0552630:CDS |
| TTAGAGAGCTTGGGAATGAG+GGG | 0.642564 | 4_1:+49300680 | Msa0552630:CDS |
| AGGCAGGCAGTCCCTTGTAA+GGG | 0.644070 | 4_1:-49304134 | None:intergenic |
| TCTATCATATGTCTGCAGCA+AGG | 0.648889 | 4_1:-49304285 | None:intergenic |
| TAGAGAGCTTGGGAATGAGG+GGG | 0.658577 | 4_1:+49300681 | Msa0552630:CDS |
| ACAGGCGTTACAATCTTCTG+TGG | 0.663312 | 4_1:+49301878 | Msa0552630:CDS |
| TCAGAGTGTTAAAACCTGGT+GGG | 0.664069 | 4_1:+49301676 | Msa0552630:CDS |
| GCTTACGATGCAGAAAACAA+AGG | 0.677893 | 4_1:-49304513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTTAAGAAAAAACAA+CGG | - | chr4_1:49301948-49301967 | None:intergenic | 10.0% |
| !!! | TCAAATTATTTTTTCTATAA+TGG | + | chr4_1:49304043-49304062 | Msa0552630:intron | 10.0% |
| !! | TGAATATTATTAAACAAAAA+AGG | + | chr4_1:49304608-49304627 | Msa0552630:three_prime_UTR | 10.0% |
| !! | GAATATTATTAAACAAAAAA+GGG | + | chr4_1:49304609-49304628 | Msa0552630:three_prime_UTR | 10.0% |
| !!! | TTTGCATTAAATTTGTTTTA+TGG | + | chr4_1:49300807-49300826 | Msa0552630:intron | 15.0% |
| !!! | TTGCATTAAATTTGTTTTAT+GGG | + | chr4_1:49300808-49300827 | Msa0552630:intron | 15.0% |
| !!! | TAAAACAAAGTTGATTTATT+TGG | + | chr4_1:49301484-49301503 | Msa0552630:intron | 15.0% |
| !!! | TTACATGATTAATACTTTTA+AGG | - | chr4_1:49302879-49302898 | None:intergenic | 15.0% |
| !! | AAAAAAACATTATAACATCA+AGG | - | chr4_1:49303081-49303100 | None:intergenic | 15.0% |
| !!! | TTGATGTTATAATGTTTTTT+TGG | + | chr4_1:49303080-49303099 | Msa0552630:intron | 15.0% |
| !!! | ATAATTTGAAATAGCATTAA+CGG | - | chr4_1:49304032-49304051 | None:intergenic | 15.0% |
| !! | AATAGAATTTATAGATAGTA+AGG | + | chr4_1:49304340-49304359 | Msa0552630:three_prime_UTR | 15.0% |
| !! | ATAGAATTTATAGATAGTAA+GGG | + | chr4_1:49304341-49304360 | Msa0552630:three_prime_UTR | 15.0% |
| !! | ATAATATGCACAATAATTGA+AGG | - | chr4_1:49300766-49300785 | None:intergenic | 20.0% |
| !! | TATTATGTGATGTGATATAA+TGG | + | chr4_1:49300783-49300802 | Msa0552630:intron | 20.0% |
| !!! | TGCATTAAATTTGTTTTATG+GGG | + | chr4_1:49300809-49300828 | Msa0552630:intron | 20.0% |
| !! | ATAATAAAACCCTAAAAGAT+GGG | - | chr4_1:49300928-49300947 | None:intergenic | 20.0% |
| !! | AATAATAAAACCCTAAAAGA+TGG | - | chr4_1:49300929-49300948 | None:intergenic | 20.0% |
| !!! | CTATTTTCTCAAAGTATTAT+TGG | - | chr4_1:49301179-49301198 | None:intergenic | 20.0% |
| !!! | TTTTAATGTTTGAAGTTTGT+GGG | + | chr4_1:49301315-49301334 | Msa0552630:intron | 20.0% |
| !! | AAAAAATAGTCGGTAAAAAT+TGG | - | chr4_1:49301552-49301571 | None:intergenic | 20.0% |
| !! | TCTTGAAAACAAGTTATTAT+TGG | + | chr4_1:49301839-49301858 | Msa0552630:CDS | 20.0% |
| !! | GTTAATAAGGAAAAAAAATC+TGG | - | chr4_1:49302296-49302315 | None:intergenic | 20.0% |
| !! | TATAATTAGAACTTGTAAGA+TGG | - | chr4_1:49302329-49302348 | None:intergenic | 20.0% |
| !!! | ATGGTAACATATTTAAGATT+TGG | - | chr4_1:49303019-49303038 | None:intergenic | 20.0% |
| !! | AAATCTTAAATATGTTACCA+TGG | + | chr4_1:49303018-49303037 | Msa0552630:intron | 20.0% |
| !!! | ATATACTTTTGATTTACATG+TGG | + | chr4_1:49303765-49303784 | Msa0552630:intron | 20.0% |
| !!! | CAGAGTTTGTAATTTTAAAT+AGG | + | chr4_1:49303796-49303815 | Msa0552630:intron | 20.0% |
| !! | AAAATAGACGAAACTATTAA+CGG | - | chr4_1:49303997-49304016 | None:intergenic | 20.0% |
| !!! | ATCCATATTTTTTTTTTTGC+AGG | + | chr4_1:49304243-49304262 | Msa0552630:intron | 20.0% |
| !! | AACCTGCAAAAAAAAAAATA+TGG | - | chr4_1:49304248-49304267 | None:intergenic | 20.0% |
| !! | AATTCACTCTATGCATTTTT+CGG | - | chr4_1:49300977-49300996 | None:intergenic | 25.0% |
| !!! | GTTTTAATGTTTGAAGTTTG+TGG | + | chr4_1:49301314-49301333 | Msa0552630:intron | 25.0% |
| !! | TTTAATGTTTGAAGTTTGTG+GGG | + | chr4_1:49301316-49301335 | Msa0552630:intron | 25.0% |
| ! | TGAAGTTTGCAAAAAATAGT+CGG | - | chr4_1:49301562-49301581 | None:intergenic | 25.0% |
| !!! | AATAACTTGTTTTCAAGATC+AGG | - | chr4_1:49301837-49301856 | None:intergenic | 25.0% |
| ! | AAAACAACGGTTAATAAAGA+TGG | - | chr4_1:49301935-49301954 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAAAAATCTGGA+TGG | - | chr4_1:49302292-49302311 | None:intergenic | 25.0% |
| !! | TTTTCGTTTAATCAATCTGT+TGG | + | chr4_1:49302761-49302780 | Msa0552630:intron | 25.0% |
| ! | TAAAAATTGGATGACACTAT+AGG | - | chr4_1:49302789-49302808 | None:intergenic | 25.0% |
| !! | TATTTTCAGCGTTAAAATTG+TGG | + | chr4_1:49302847-49302866 | Msa0552630:intron | 25.0% |
| ! | CCATATACTATTAATTGAAC+TGG | - | chr4_1:49303172-49303191 | None:intergenic | 25.0% |
| ! | CCAGTTCAATTAATAGTATA+TGG | + | chr4_1:49303169-49303188 | Msa0552630:intron | 25.0% |
| ! | TATTTGCAAAGAAAGTAGTT+TGG | - | chr4_1:49303285-49303304 | None:intergenic | 25.0% |
| !!! | TTAAGGTGTTTGATTTGATA+CGG | + | chr4_1:49304391-49304410 | Msa0552630:three_prime_UTR | 25.0% |
| ! | GTATATAATAACTGGAAACT+CGG | - | chr4_1:49304441-49304460 | None:intergenic | 25.0% |
| ! | GACAACTAGTATATAATAAC+TGG | - | chr4_1:49304449-49304468 | None:intergenic | 25.0% |
| ! | CAATTACATGATTTATAGCT+TGG | - | chr4_1:49304585-49304604 | None:intergenic | 25.0% |
| AGTGAATTAGTGTATCCTTT+AGG | + | chr4_1:49300989-49301008 | Msa0552630:intron | 30.0% | |
| ATTTCATCCAACATGAATCA+AGG | - | chr4_1:49301065-49301084 | None:intergenic | 30.0% | |
| TGCTGTTATATAGATGCTAA+TGG | + | chr4_1:49301278-49301297 | Msa0552630:intron | 30.0% | |
| ! | TTAATGTTTGAAGTTTGTGG+GGG | + | chr4_1:49301317-49301336 | Msa0552630:intron | 30.0% |
| ! | GAACTAGATGCATTTTATCT+TGG | + | chr4_1:49301517-49301536 | Msa0552630:intron | 30.0% |
| !!! | GACTATTTTTTGCAAACTTC+AGG | + | chr4_1:49301561-49301580 | Msa0552630:intron | 30.0% |
| !!! | TGGATTTGGTTGTTTTAATC+TGG | + | chr4_1:49301610-49301629 | Msa0552630:intron | 30.0% |
| GAAAACAAGTTATTATTGGC+AGG | + | chr4_1:49301843-49301862 | Msa0552630:CDS | 30.0% | |
| AACGGTTAATAAAGATGGTA+AGG | - | chr4_1:49301930-49301949 | None:intergenic | 30.0% | |
| AAAACCATTAACTACAGCAA+TGG | - | chr4_1:49302155-49302174 | None:intergenic | 30.0% | |
| !! | ATGGTTTTTCATTTTTGTGC+AGG | + | chr4_1:49302167-49302186 | Msa0552630:intron | 30.0% |
| AAAAAGCCTTCATGGAAAAT+TGG | + | chr4_1:49302378-49302397 | Msa0552630:CDS | 30.0% | |
| ! | TTCATCTTTTGCACTAAAGA+AGG | + | chr4_1:49302401-49302420 | Msa0552630:CDS | 30.0% |
| TCAAAATCAATTTGCACCTT+GGG | - | chr4_1:49302441-49302460 | None:intergenic | 30.0% | |
| ATCAAAATCAATTTGCACCT+TGG | - | chr4_1:49302442-49302461 | None:intergenic | 30.0% | |
| !!! | CGGCTATTTGAACATTTTTT+CGG | - | chr4_1:49302907-49302926 | None:intergenic | 30.0% |
| ATGTTGTCAATTCCAAATAG+CGG | - | chr4_1:49302969-49302988 | None:intergenic | 30.0% | |
| ACATAGATGTCAAGACTATT+TGG | + | chr4_1:49302985-49303004 | Msa0552630:intron | 30.0% | |
| !! | ATAGGTAATTTTGGCAATTG+AGG | - | chr4_1:49303250-49303269 | None:intergenic | 30.0% |
| ! | TGGAGTTTGATAGGTAATTT+TGG | - | chr4_1:49303259-49303278 | None:intergenic | 30.0% |
| TGTTCCTTTGTCAAAATTCA+AGG | + | chr4_1:49303346-49303365 | Msa0552630:intron | 30.0% | |
| CAATACTTCATCAGTTGATT+CGG | + | chr4_1:49303506-49303525 | Msa0552630:intron | 30.0% | |
| !! | AAGCTTTATTAGTCATTCTG+TGG | - | chr4_1:49303708-49303727 | None:intergenic | 30.0% |
| ! | TTTGATTTACATGTGGATTC+TGG | + | chr4_1:49303772-49303791 | Msa0552630:intron | 30.0% |
| TTGATTTACATGTGGATTCT+GGG | + | chr4_1:49303773-49303792 | Msa0552630:intron | 30.0% | |
| CAGAGTTTAAATTAAGCTTC+TGG | + | chr4_1:49303819-49303838 | Msa0552630:intron | 30.0% | |
| AATGCTAGATACAATTCAGT+GGG | - | chr4_1:49303855-49303874 | None:intergenic | 30.0% | |
| AAATGCTAGATACAATTCAG+TGG | - | chr4_1:49303856-49303875 | None:intergenic | 30.0% | |
| AAGACAAACTTTCAGAACAA+TGG | - | chr4_1:49304069-49304088 | None:intergenic | 30.0% | |
| !! | TTGTTCTGAAAGTTTGTCTT+TGG | + | chr4_1:49304069-49304088 | Msa0552630:intron | 30.0% |
| !! | GTTGTTTGGTGTCATTTATT+TGG | + | chr4_1:49304200-49304219 | Msa0552630:intron | 30.0% |
| ATATGGATAAGTTATGCAAC+AGG | - | chr4_1:49304231-49304250 | None:intergenic | 30.0% | |
| AGATAGTAAGGGATTGTTAT+CGG | + | chr4_1:49304352-49304371 | Msa0552630:three_prime_UTR | 30.0% | |
| GTTATGTTATCGTTCGTTTA+AGG | + | chr4_1:49304374-49304393 | Msa0552630:three_prime_UTR | 30.0% | |
| ATTATGAAGTAGCTAAAGAG+AGG | - | chr4_1:49304481-49304500 | None:intergenic | 30.0% | |
| ! | TGGCTGAATTTAAGATTTGT+AGG | - | chr4_1:49304565-49304584 | None:intergenic | 30.0% |
| TTAAACAAAAAAGGGCAATC+AGG | + | chr4_1:49304617-49304636 | Msa0552630:three_prime_UTR | 30.0% | |
| ATGCACAATAATTGAAGGAG+AGG | - | chr4_1:49300761-49300780 | None:intergenic | 35.0% | |
| ! | GCAATAGAAACACGTAGTTT+TGG | - | chr4_1:49300856-49300875 | None:intergenic | 35.0% |
| TTACCCAACATCATGATTCA+TGG | + | chr4_1:49300898-49300917 | Msa0552630:intron | 35.0% | |
| ATGCCATGAATCATGATGTT+GGG | - | chr4_1:49300904-49300923 | None:intergenic | 35.0% | |
| TATGCCATGAATCATGATGT+TGG | - | chr4_1:49300905-49300924 | None:intergenic | 35.0% | |
| CCAACATGAATCAAGGAAAA+AGG | - | chr4_1:49301058-49301077 | None:intergenic | 35.0% | |
| ! | CCTTTTTCCTTGATTCATGT+TGG | + | chr4_1:49301055-49301074 | Msa0552630:intron | 35.0% |
| TTAACCTGGAAACTTAGACA+TGG | + | chr4_1:49301118-49301137 | Msa0552630:intron | 35.0% | |
| ! | ACACCTTCAATTTGAAGTGT+AGG | + | chr4_1:49301249-49301268 | Msa0552630:intron | 35.0% |
| ATATAGATGCTAATGGCTTG+TGG | + | chr4_1:49301285-49301304 | Msa0552630:intron | 35.0% | |
| GGAAAATGGGAAATCGTATT+TGG | - | chr4_1:49301419-49301438 | None:intergenic | 35.0% | |
| TCGGTAAAAATTGGCATCTT+TGG | - | chr4_1:49301543-49301562 | None:intergenic | 35.0% | |
| TAAAACAACCAAATCCACAG+AGG | - | chr4_1:49301607-49301626 | None:intergenic | 35.0% | |
| TATCATCTGAAAGGACAATG+GGG | - | chr4_1:49301814-49301833 | None:intergenic | 35.0% | |
| GTATCATCTGAAAGGACAAT+GGG | - | chr4_1:49301815-49301834 | None:intergenic | 35.0% | |
| AAGATCAGGTATCATCTGAA+AGG | - | chr4_1:49301823-49301842 | None:intergenic | 35.0% | |
| CTGTGGTAAGTTTCATTATC+TGG | + | chr4_1:49301895-49301914 | Msa0552630:intron | 35.0% | |
| ATTGTGCAATAGAATACGCT+AGG | + | chr4_1:49301989-49302008 | Msa0552630:intron | 35.0% | |
| ! | TTTTCCTATTGCATGTCTAG+TGG | + | chr4_1:49302251-49302270 | Msa0552630:intron | 35.0% |
| AAAAAAATCTGGATGGCTCA+TGG | - | chr4_1:49302285-49302304 | None:intergenic | 35.0% | |
| TCAAAGCTAAAAAGCCTTCA+TGG | + | chr4_1:49302370-49302389 | Msa0552630:CDS | 35.0% | |
| ! | GATGAACCAATTTTCCATGA+AGG | - | chr4_1:49302387-49302406 | None:intergenic | 35.0% |
| TTAGGCTTACGTGTGATATT+TGG | + | chr4_1:49302565-49302584 | Msa0552630:intron | 35.0% | |
| CAAAAATTGCTCATGTGGAA+GGG | + | chr4_1:49302646-49302665 | Msa0552630:CDS | 35.0% | |
| GTGGACATGAATCATATCAT+TGG | - | chr4_1:49303208-49303227 | None:intergenic | 35.0% | |
| !! | AATTTTGGCAATTGAGGTGT+GGG | - | chr4_1:49303244-49303263 | None:intergenic | 35.0% |
| !! | TAATTTTGGCAATTGAGGTG+TGG | - | chr4_1:49303245-49303264 | None:intergenic | 35.0% |
| TTGCAAAGAAAGTAGTTTGG+TGG | - | chr4_1:49303282-49303301 | None:intergenic | 35.0% | |
| ACAATCAATGAAAGTTCTGC+AGG | - | chr4_1:49303329-49303348 | None:intergenic | 35.0% | |
| !! | ACGTCCTTGAATTTTGACAA+AGG | - | chr4_1:49303353-49303372 | None:intergenic | 35.0% |
| TAAATTGACAGAAGCAAGGA+TGG | - | chr4_1:49303402-49303421 | None:intergenic | 35.0% | |
| CAACTAAATTGACAGAAGCA+AGG | - | chr4_1:49303406-49303425 | None:intergenic | 35.0% | |
| CTTGCTTCTGTCAATTTAGT+TGG | + | chr4_1:49303404-49303423 | Msa0552630:intron | 35.0% | |
| CAAAAATTCCACTGAGTCAA+CGG | - | chr4_1:49303548-49303567 | None:intergenic | 35.0% | |
| TCGGAAACAACTACAACAAA+AGG | - | chr4_1:49303583-49303602 | None:intergenic | 35.0% | |
| TTGCTAGGCAACTTAATCAT+TGG | - | chr4_1:49303641-49303660 | None:intergenic | 35.0% | |
| ATGCTAGATACAATTCAGTG+GGG | - | chr4_1:49303854-49303873 | None:intergenic | 35.0% | |
| ACACCAAACAACTTAAGAGA+GGG | - | chr4_1:49304192-49304211 | None:intergenic | 35.0% | |
| TAATGTTGTAACCTTTGTCG+TGG | + | chr4_1:49304308-49304327 | Msa0552630:three_prime_UTR | 35.0% | |
| AATGTTGTAACCTTTGTCGT+GGG | + | chr4_1:49304309-49304328 | Msa0552630:three_prime_UTR | 35.0% | |
| ATTCAGTTACATTAGTGCAC+TGG | - | chr4_1:49304671-49304690 | None:intergenic | 35.0% | |
| !! | AAAGATGTATGGTGCTGTGT+TGG | + | chr4_1:49300609-49300628 | Msa0552630:CDS | 40.0% |
| TTTGATGCGATTAGAGAGCT+TGG | + | chr4_1:49300670-49300689 | Msa0552630:CDS | 40.0% | |
| TTGATGCGATTAGAGAGCTT+GGG | + | chr4_1:49300671-49300690 | Msa0552630:CDS | 40.0% | |
| ATTAGAGAGCTTGGGAATGA+GGG | + | chr4_1:49300679-49300698 | Msa0552630:CDS | 40.0% | |
| GATGCAGATGTAATAACCAG+AGG | - | chr4_1:49300721-49300740 | None:intergenic | 40.0% | |
| ! | TCATGGCATACCCATCTTTT+AGG | + | chr4_1:49300915-49300934 | Msa0552630:intron | 40.0% |
| ! | CATGGCATACCCATCTTTTA+GGG | + | chr4_1:49300916-49300935 | Msa0552630:intron | 40.0% |
| CGGACATCATACGACAAAAA+CGG | - | chr4_1:49300957-49300976 | None:intergenic | 40.0% | |
| ! | ATAGAAGCACAGAAGCCTAA+AGG | - | chr4_1:49301007-49301026 | None:intergenic | 40.0% |
| TTAGATGAGCATGCTTAACC+TGG | + | chr4_1:49301104-49301123 | Msa0552630:intron | 40.0% | |
| ATGTCCATGTCTAAGTTTCC+AGG | - | chr4_1:49301125-49301144 | None:intergenic | 40.0% | |
| GGAAACTTAGACATGGACAT+TGG | + | chr4_1:49301125-49301144 | Msa0552630:intron | 40.0% | |
| CAGCCTACACTTCAAATTGA+AGG | - | chr4_1:49301255-49301274 | None:intergenic | 40.0% | |
| ! | AAAACATGTGTCGATCGACA+GGG | + | chr4_1:49301356-49301375 | Msa0552630:intron | 40.0% |
| ! | TTTTCGCTTATGCTCAAGAC+CGG | - | chr4_1:49301459-49301478 | None:intergenic | 40.0% |
| ! | TCAGAGTGTTAAAACCTGGT+GGG | + | chr4_1:49301676-49301695 | Msa0552630:CDS | 40.0% |
| GGTATCATCTGAAAGGACAA+TGG | - | chr4_1:49301816-49301835 | None:intergenic | 40.0% | |
| ! | GGCAGGATTTTCAGAAATAC+AGG | + | chr4_1:49301860-49301879 | Msa0552630:CDS | 40.0% |
| ! | TGTCCGATGAGTTGAGTAAT+AGG | + | chr4_1:49302085-49302104 | Msa0552630:intron | 40.0% |
| CAGCCTATTACTCAACTCAT+CGG | - | chr4_1:49302091-49302110 | None:intergenic | 40.0% | |
| TCAAATACCAGTAGCAGACT+GGG | - | chr4_1:49302129-49302148 | None:intergenic | 40.0% | |
| ACGACCATTGCTGTAGTTAA+TGG | + | chr4_1:49302148-49302167 | Msa0552630:intron | 40.0% | |
| TACTCCACTAGACATGCAAT+AGG | - | chr4_1:49302258-49302277 | None:intergenic | 40.0% | |
| ATTGCATGTCTAGTGGAGTA+TGG | + | chr4_1:49302258-49302277 | Msa0552630:intron | 40.0% | |
| TTGCATGTCTAGTGGAGTAT+GGG | + | chr4_1:49302259-49302278 | Msa0552630:intron | 40.0% | |
| TGGTCAGAGCGATGTTAATA+AGG | - | chr4_1:49302309-49302328 | None:intergenic | 40.0% | |
| !! | TCTAGCTTTGTCCCTCTATT+AGG | + | chr4_1:49302547-49302566 | Msa0552630:intron | 40.0% |
| TCACACGTAAGCCTAATAGA+GGG | - | chr4_1:49302561-49302580 | None:intergenic | 40.0% | |
| ATCACACGTAAGCCTAATAG+AGG | - | chr4_1:49302562-49302581 | None:intergenic | 40.0% | |
| TGAAATCGGACCTACAAGAA+AGG | + | chr4_1:49302619-49302638 | Msa0552630:CDS | 40.0% | |
| ! | TTTTTGCAGGCCTTTCTTGT+AGG | - | chr4_1:49302632-49302651 | None:intergenic | 40.0% |
| ! | TCCACATGAGCAATTTTTGC+AGG | - | chr4_1:49302645-49302664 | None:intergenic | 40.0% |
| GCAAAAATTGCTCATGTGGA+AGG | + | chr4_1:49302645-49302664 | Msa0552630:CDS | 40.0% | |
| !! | GAGGAGAAAGTGTTGAAGTT+AGG | + | chr4_1:49302677-49302696 | Msa0552630:CDS | 40.0% |
| AGTAATCCTCAATCAGCTTG+TGG | + | chr4_1:49302719-49302738 | Msa0552630:CDS | 40.0% | |
| AAACTGAGATACCAGGATGT+CGG | - | chr4_1:49302927-49302946 | None:intergenic | 40.0% | |
| ATCCTGGTATCTCAGTTTCA+GGG | + | chr4_1:49302929-49302948 | Msa0552630:intron | 40.0% | |
| ! | GAATAGAAGTATGAGTGCCA+TGG | - | chr4_1:49303038-49303057 | None:intergenic | 40.0% |
| ! | CAAAGAAAGTAGTTTGGTGG+TGG | - | chr4_1:49303279-49303298 | None:intergenic | 40.0% |
| GCTTCTGTCAATTTAGTTGG+AGG | + | chr4_1:49303407-49303426 | Msa0552630:intron | 40.0% | |
| !! | GCATTTGCTGCTTCTGTTTT+CGG | - | chr4_1:49303602-49303621 | None:intergenic | 40.0% |
| !! | GGCAACTTAATCATTGGCTT+TGG | - | chr4_1:49303635-49303654 | None:intergenic | 40.0% |
| TTAGTCATTCTGTGGCTCTT+TGG | - | chr4_1:49303700-49303719 | None:intergenic | 40.0% | |
| GAGTTGAATTGCAATCAGCT+TGG | + | chr4_1:49303926-49303945 | Msa0552630:intron | 40.0% | |
| AGCTTGGTCAGTGAATTTCT+GGG | + | chr4_1:49303942-49303961 | Msa0552630:intron | 40.0% | |
| GAAAATCCCAAACTCTGCAA+GGG | - | chr4_1:49303971-49303990 | None:intergenic | 40.0% | |
| AGAAAATCCCAAACTCTGCA+AGG | - | chr4_1:49303972-49303991 | None:intergenic | 40.0% | |
| TTTGTCTTTGGTCTACAGTG+TGG | + | chr4_1:49304081-49304100 | Msa0552630:intron | 40.0% | |
| TTGTCTTTGGTCTACAGTGT+GGG | + | chr4_1:49304082-49304101 | Msa0552630:intron | 40.0% | |
| ! | TCTCCCTCTCTTAAGTTGTT+TGG | + | chr4_1:49304186-49304205 | Msa0552630:intron | 40.0% |
| GACACCAAACAACTTAAGAG+AGG | - | chr4_1:49304193-49304212 | None:intergenic | 40.0% | |
| TCTATCATATGTCTGCAGCA+AGG | - | chr4_1:49304288-49304307 | None:intergenic | 40.0% | |
| GCTTACGATGCAGAAAACAA+AGG | - | chr4_1:49304516-49304535 | None:intergenic | 40.0% | |
| GCATCAAACACTTGACTGAC+AGG | - | chr4_1:49300658-49300677 | None:intergenic | 45.0% | |
| GATTAGAGAGCTTGGGAATG+AGG | + | chr4_1:49300678-49300697 | Msa0552630:CDS | 45.0% | |
| TTAGAGAGCTTGGGAATGAG+GGG | + | chr4_1:49300680-49300699 | Msa0552630:CDS | 45.0% | |
| GAATGAGGGGGTTGAGAAAT+TGG | + | chr4_1:49300693-49300712 | Msa0552630:CDS | 45.0% | |
| GGTTGAGAAATTGGATCCTC+TGG | + | chr4_1:49300702-49300721 | Msa0552630:CDS | 45.0% | |
| ! | GTAACCACATGTGTCACTCT+CGG | + | chr4_1:49301217-49301236 | Msa0552630:intron | 45.0% |
| ! | ATGTTTGAAGTTTGTGGGGG+TGG | + | chr4_1:49301320-49301339 | Msa0552630:intron | 45.0% |
| ! | TGTTTGAAGTTTGTGGGGGT+GGG | + | chr4_1:49301321-49301340 | Msa0552630:intron | 45.0% |
| ! | GAAAACATGTGTCGATCGAC+AGG | + | chr4_1:49301355-49301374 | Msa0552630:intron | 45.0% |
| AACTTCAGGCAAGTTTCCAG+TGG | + | chr4_1:49301575-49301594 | Msa0552630:intron | 45.0% | |
| GGAATCTTCCTCTGTGGATT+TGG | + | chr4_1:49301596-49301615 | Msa0552630:intron | 45.0% | |
| TCTTGAGTCAGTTGGTCGAT+AGG | - | chr4_1:49301651-49301670 | None:intergenic | 45.0% | |
| TGAGGACTTCTTGAGTCAGT+TGG | - | chr4_1:49301659-49301678 | None:intergenic | 45.0% | |
| ! | GTCCTCAGAGTGTTAAAACC+TGG | + | chr4_1:49301672-49301691 | Msa0552630:CDS | 45.0% |
| !! | CACCAGGTTTTAACACTCTG+AGG | - | chr4_1:49301677-49301696 | None:intergenic | 45.0% |
| ! | CTCAGAGTGTTAAAACCTGG+TGG | + | chr4_1:49301675-49301694 | Msa0552630:CDS | 45.0% |
| AAATCCTCCCAATCTGCTGT+GGG | + | chr4_1:49301714-49301733 | Msa0552630:CDS | 45.0% | |
| ACAGGCGTTACAATCTTCTG+TGG | + | chr4_1:49301878-49301897 | Msa0552630:CDS | 45.0% | |
| GTCAAATACCAGTAGCAGAC+TGG | - | chr4_1:49302130-49302149 | None:intergenic | 45.0% | |
| GGTTGTGAAAAGTTCACCCA+AGG | + | chr4_1:49302422-49302441 | Msa0552630:CDS | 45.0% | |
| AAGAAACCTGAACTGCCATC+TGG | + | chr4_1:49302507-49302526 | Msa0552630:CDS | 45.0% | |
| TCTTTACCAGATGGCAGTTC+AGG | - | chr4_1:49302516-49302535 | None:intergenic | 45.0% | |
| AGGGCTGAATCTTTACCAGA+TGG | - | chr4_1:49302525-49302544 | None:intergenic | 45.0% | |
| AGAGGGACAAAGCTAGAGAA+GGG | - | chr4_1:49302544-49302563 | None:intergenic | 45.0% | |
| TAGAGGGACAAAGCTAGAGA+AGG | - | chr4_1:49302545-49302564 | None:intergenic | 45.0% | |
| TAGCTGACATGTTGTGCAAC+AGG | + | chr4_1:49302590-49302609 | Msa0552630:intron | 45.0% | |
| AGCTGACATGTTGTGCAACA+GGG | + | chr4_1:49302591-49302610 | Msa0552630:intron | 45.0% | |
| GCAACAGGGGATTGTGAAAT+CGG | + | chr4_1:49302605-49302624 | Msa0552630:intron | 45.0% | |
| GCCTGCAAAAATTGCTCATG+TGG | + | chr4_1:49302641-49302660 | Msa0552630:CDS | 45.0% | |
| TGTTCAAATAGCCGACATCC+TGG | + | chr4_1:49302913-49302932 | Msa0552630:intron | 45.0% | |
| CATCCTGGTATCTCAGTTTC+AGG | + | chr4_1:49302928-49302947 | Msa0552630:intron | 45.0% | |
| AACCCTGAAACTGAGATACC+AGG | - | chr4_1:49302934-49302953 | None:intergenic | 45.0% | |
| TGGTATCTCAGTTTCAGGGT+TGG | + | chr4_1:49302933-49302952 | Msa0552630:intron | 45.0% | |
| GTCAATTCCAAATAGCGGCA+TGG | - | chr4_1:49302964-49302983 | None:intergenic | 45.0% | |
| TGTGGGATGTTGAGTTAGAG+TGG | - | chr4_1:49303227-49303246 | None:intergenic | 45.0% | |
| !! | GTTTGGTGGTGGAGTTTGAT+AGG | - | chr4_1:49303268-49303287 | None:intergenic | 45.0% |
| TCTTCTCACGTGCTTCCTAT+TGG | + | chr4_1:49303454-49303473 | Msa0552630:intron | 45.0% | |
| CTTCTCACGTGCTTCCTATT+GGG | + | chr4_1:49303455-49303474 | Msa0552630:intron | 45.0% | |
| AACTTGCAACAGCTCCCAAT+AGG | - | chr4_1:49303472-49303491 | None:intergenic | 45.0% | |
| ATTGGGAGCTGTTGCAAGTT+TGG | + | chr4_1:49303472-49303491 | Msa0552630:intron | 45.0% | |
| AACCATACGCTGCATTTGCT+AGG | - | chr4_1:49303656-49303675 | None:intergenic | 45.0% | |
| CAGCTTGGTCAGTGAATTTC+TGG | + | chr4_1:49303941-49303960 | Msa0552630:intron | 45.0% | |
| TTTGGTCTACAGTGTGGGTT+AGG | + | chr4_1:49304087-49304106 | Msa0552630:intron | 45.0% | |
| ! | TTGGTCTACAGTGTGGGTTA+GGG | + | chr4_1:49304088-49304107 | Msa0552630:intron | 45.0% |
| ! | TACCTTCTCGCCCATTTTGA+AGG | - | chr4_1:49304157-49304176 | None:intergenic | 45.0% |
| ! | TTTTTGCAGGTTGCACTGTC+CGG | + | chr4_1:49304256-49304275 | Msa0552630:intron | 45.0% |
| TGTAACCTTTGTCGTGGGAA+TGG | + | chr4_1:49304314-49304333 | Msa0552630:three_prime_UTR | 45.0% | |
| TTATGCCATTCCCACGACAA+AGG | - | chr4_1:49304322-49304341 | None:intergenic | 45.0% | |
| !! | ATAATGATTTAATTAAAAAT+TGG | - | chr4_1:49302802-49302821 | None:intergenic | 5.0% |
| !!! | ATTTTTAATTAAATCATTAT+TGG | + | chr4_1:49302802-49302821 | Msa0552630:intron | 5.0% |
| !! | TGGTGCTGTGTTGGCATGTA+CGG | + | chr4_1:49300618-49300637 | Msa0552630:CDS | 50.0% |
| TAGAGAGCTTGGGAATGAGG+GGG | + | chr4_1:49300681-49300700 | Msa0552630:CDS | 50.0% | |
| GCACTGCACATGCGGAAAAT+GGG | - | chr4_1:49301432-49301451 | None:intergenic | 50.0% | |
| AGCACTGCACATGCGGAAAA+TGG | - | chr4_1:49301433-49301452 | None:intergenic | 50.0% | |
| TCCAGTGGAATCTTCCTCTG+TGG | + | chr4_1:49301590-49301609 | Msa0552630:intron | 50.0% | |
| TCCACAGAGGAAGATTCCAC+TGG | - | chr4_1:49301594-49301613 | None:intergenic | 50.0% | |
| CGAATAAGAGTTGTCCCACC+AGG | - | chr4_1:49301693-49301712 | None:intergenic | 50.0% | |
| CAAATCCTCCCAATCTGCTG+TGG | + | chr4_1:49301713-49301732 | Msa0552630:CDS | 50.0% | |
| ACCTGAACCCACAGCAGATT+GGG | - | chr4_1:49301724-49301743 | None:intergenic | 50.0% | |
| TGCTGTGGGTTCAGGTGATA+AGG | + | chr4_1:49301728-49301747 | Msa0552630:CDS | 50.0% | |
| GCTGACATGTTGTGCAACAG+GGG | + | chr4_1:49302592-49302611 | Msa0552630:intron | 50.0% | |
| ATGTGGAAGGGCAGAAGAAG+AGG | + | chr4_1:49302658-49302677 | Msa0552630:CDS | 50.0% | |
| ACACTGCCACAAGCTGATTG+AGG | - | chr4_1:49302728-49302747 | None:intergenic | 50.0% | |
| TGCCTAGCAAATGCAGCGTA+TGG | + | chr4_1:49303651-49303670 | Msa0552630:intron | 50.0% | |
| TGGGATTCCCTTGCAGAGTT+TGG | + | chr4_1:49303961-49303980 | Msa0552630:intron | 50.0% | |
| GGGATTCCCTTGCAGAGTTT+GGG | + | chr4_1:49303962-49303981 | Msa0552630:intron | 50.0% | |
| !! | TGGTCTACAGTGTGGGTTAG+GGG | + | chr4_1:49304089-49304108 | Msa0552630:intron | 50.0% |
| TGCAGTACCTGCCCTTACAA+GGG | + | chr4_1:49304123-49304142 | Msa0552630:CDS | 50.0% | |
| GGACTGCCTGCCTTCAAAAT+GGG | + | chr4_1:49304144-49304163 | Msa0552630:CDS | 50.0% | |
| !! | TTCTCGCCCATTTTGAAGGC+AGG | - | chr4_1:49304153-49304172 | None:intergenic | 50.0% |
| TGCCTTCAAAATGGGCGAGA+AGG | + | chr4_1:49304152-49304171 | Msa0552630:CDS | 50.0% | |
| GTCTGCAGCAAGGAAGTTTC+CGG | - | chr4_1:49304278-49304297 | None:intergenic | 50.0% | |
| GTGTCCGAGAGTGACACATG+TGG | - | chr4_1:49301224-49301243 | None:intergenic | 55.0% | |
| TTGAAGTTTGTGGGGGTGGG+TGG | + | chr4_1:49301324-49301343 | Msa0552630:intron | 55.0% | |
| TGAAGTTTGTGGGGGTGGGT+GGG | + | chr4_1:49301325-49301344 | Msa0552630:intron | 55.0% | |
| ! | TGTGTCGATCGACAGGGTCT+TGG | + | chr4_1:49301362-49301381 | Msa0552630:intron | 55.0% |
| GACAGGGTCTTGGCAGAAGT+TGG | + | chr4_1:49301372-49301391 | Msa0552630:intron | 55.0% | |
| TGAACCCACAGCAGATTGGG+AGG | - | chr4_1:49301721-49301740 | None:intergenic | 55.0% | |
| TCCCAATCTGCTGTGGGTTC+AGG | + | chr4_1:49301720-49301739 | Msa0552630:CDS | 55.0% | |
| CACCTGAACCCACAGCAGAT+TGG | - | chr4_1:49301725-49301744 | None:intergenic | 55.0% | |
| CTTGAAGCCCAGTCTGCTAC+TGG | + | chr4_1:49302119-49302138 | Msa0552630:intron | 55.0% | |
| GGACTCTCCATGCCGCTATT+TGG | + | chr4_1:49302954-49302973 | Msa0552630:intron | 55.0% | |
| !! | ATTCGCTGCCGTTGACTCAG+TGG | + | chr4_1:49303537-49303556 | Msa0552630:intron | 55.0% |
| !! | GTGGGTTAGGGGATGCGTTT+AGG | + | chr4_1:49304100-49304119 | Msa0552630:CDS | 55.0% |
| GTGCAGTACCTGCCCTTACA+AGG | + | chr4_1:49304122-49304141 | Msa0552630:CDS | 55.0% | |
| AGGCAGGCAGTCCCTTGTAA+GGG | - | chr4_1:49304137-49304156 | None:intergenic | 55.0% | |
| AAGGCAGGCAGTCCCTTGTA+AGG | - | chr4_1:49304138-49304157 | None:intergenic | 55.0% | |
| GGGACTGCCTGCCTTCAAAA+TGG | + | chr4_1:49304143-49304162 | Msa0552630:CDS | 55.0% | |
| CCGGAGTAGCACTGCACATG+CGG | - | chr4_1:49301440-49301459 | None:intergenic | 60.0% | |
| ! | CCGCATGTGCAGTGCTACTC+CGG | + | chr4_1:49301437-49301456 | Msa0552630:intron | 60.0% |
| AGGCAGTCCCTTGTAAGGGC+AGG | - | chr4_1:49304133-49304152 | None:intergenic | 60.0% | |
| AGTTTGTGGGGGTGGGTGGG+TGG | + | chr4_1:49301328-49301347 | Msa0552630:intron | 65.0% | |
| GTTTGTGGGGGTGGGTGGGT+GGG | + | chr4_1:49301329-49301348 | Msa0552630:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 49300601 | 49304734 | 49300601 | ID=Msa0552630;Name=Msa0552630 |
| chr4_1 | mRNA | 49300601 | 49304734 | 49300601 | ID=Msa0552630-mRNA-1;Parent=Msa0552630;Name=Msa0552630-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.83|0.71|1|0.83|1|7|431|238 |
| chr4_1 | exon | 49300601 | 49300723 | 49300601 | ID=Msa0552630-mRNA-1:exon:13807;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49301636 | 49301749 | 49301636 | ID=Msa0552630-mRNA-1:exon:13808;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49301828 | 49301899 | 49301828 | ID=Msa0552630-mRNA-1:exon:13809;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49302369 | 49302528 | 49302369 | ID=Msa0552630-mRNA-1:exon:13810;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49302612 | 49302745 | 49302612 | ID=Msa0552630-mRNA-1:exon:13811;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49304099 | 49304173 | 49304099 | ID=Msa0552630-mRNA-1:exon:13812;Parent=Msa0552630-mRNA-1 |
| chr4_1 | exon | 49304265 | 49304734 | 49304265 | ID=Msa0552630-mRNA-1:exon:13813;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49300601 | 49300723 | 49300601 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49301636 | 49301749 | 49301636 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49301828 | 49301899 | 49301828 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49302369 | 49302528 | 49302369 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49302612 | 49302745 | 49302612 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49304099 | 49304173 | 49304099 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | CDS | 49304265 | 49304303 | 49304265 | ID=Msa0552630-mRNA-1:cds;Parent=Msa0552630-mRNA-1 |
| chr4_1 | three_prime_UTR | 49304304 | 49304734 | 49304304 | ID=Msa0552630-mRNA-1:three_prime_utr;Parent=Msa0552630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
