Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558360 | XP_003608188.2 | 91.961 | 311 | 4 | 1 | 1 | 290 | 1 | 311 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558360 | sp|A2YMP7|SCAM1_ORYSI | 67.628 | 312 | 73 | 4 | 1 | 290 | 1 | 306 | 1.90e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558360 | G7JQS3 | 91.961 | 311 | 4 | 1 | 1 | 290 | 1 | 311 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030160 | Msa0558360 | 0.812765 | 3.595089e-51 | -8.615850e-47 |
| Msa0042550 | Msa0558360 | 0.801493 | 8.774625e-49 | -8.615850e-47 |
| Msa0065680 | Msa0558360 | -0.807933 | 3.968059e-50 | -8.615850e-47 |
| Msa0092410 | Msa0558360 | 0.812794 | 3.543071e-51 | -8.615850e-47 |
| Msa0103250 | Msa0558360 | 0.806102 | 9.681497e-50 | -8.615850e-47 |
| Msa0138020 | Msa0558360 | 0.820055 | 8.394776e-53 | -8.615850e-47 |
| Msa0160960 | Msa0558360 | 0.800864 | 1.179982e-48 | -8.615850e-47 |
| Msa0178510 | Msa0558360 | 0.818482 | 1.915929e-52 | -8.615850e-47 |
| Msa0186950 | Msa0558360 | 0.805988 | 1.023068e-49 | -8.615850e-47 |
| Msa0189040 | Msa0558360 | 0.825192 | 5.358476e-54 | -8.615850e-47 |
| Msa0205010 | Msa0558360 | 0.802233 | 6.184234e-49 | -8.615850e-47 |
| Msa0217700 | Msa0558360 | 0.826827 | 2.191025e-54 | -8.615850e-47 |
| Msa0369920 | Msa0558360 | 0.801886 | 7.286140e-49 | -8.615850e-47 |
| Msa0417330 | Msa0558360 | 0.810853 | 9.373069e-51 | -8.615850e-47 |
| Msa0432160 | Msa0558360 | 0.817238 | 3.658330e-52 | -8.615850e-47 |
| Msa0464100 | Msa0558360 | 0.806311 | 8.750401e-50 | -8.615850e-47 |
| Msa0464120 | Msa0558360 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0468320 | Msa0558360 | 0.803846 | 2.868779e-49 | -8.615850e-47 |
| Msa0476680 | Msa0558360 | 0.825495 | 4.544817e-54 | -8.615850e-47 |
| Msa0241140 | Msa0558360 | 0.855361 | 6.641079e-62 | -8.615850e-47 |
| Msa0257520 | Msa0558360 | 0.802963 | 4.371424e-49 | -8.615850e-47 |
| Msa0269560 | Msa0558360 | 0.822617 | 2.152591e-53 | -8.615850e-47 |
| Msa0278570 | Msa0558360 | 0.856283 | 3.572960e-62 | -8.615850e-47 |
| Msa0278580 | Msa0558360 | 0.821062 | 4.929199e-53 | -8.615850e-47 |
| Msa0296480 | Msa0558360 | 0.809914 | 1.495088e-50 | -8.615850e-47 |
| Msa0296820 | Msa0558360 | 0.808701 | 2.721294e-50 | -8.615850e-47 |
| Msa0307310 | Msa0558360 | 0.801064 | 1.074060e-48 | -8.615850e-47 |
| Msa0317970 | Msa0558360 | 0.828658 | 7.952725e-55 | -8.615850e-47 |
| Msa0485240 | Msa0558360 | 0.801195 | 1.009812e-48 | -8.615850e-47 |
| Msa0518380 | Msa0558360 | 0.819322 | 1.234243e-52 | -8.615850e-47 |
| Msa0521010 | Msa0558360 | 0.820495 | 6.656803e-53 | -8.615850e-47 |
| Msa0532980 | Msa0558360 | 0.808657 | 2.780955e-50 | -8.615850e-47 |
| Msa0552630 | Msa0558360 | 0.806017 | 1.008814e-49 | -8.615850e-47 |
| Msa0558360 | Msa0560500 | 0.800205 | 1.607692e-48 | -8.615850e-47 |
| Msa0558360 | Msa0562570 | 0.833454 | 5.283948e-56 | -8.615850e-47 |
| Msa0558360 | Msa0569960 | 0.808882 | 2.488852e-50 | -8.615850e-47 |
| Msa0558360 | Msa0610130 | 0.811445 | 6.975376e-51 | -8.615850e-47 |
| Msa0558360 | Msa0613110 | 0.802055 | 6.726911e-49 | -8.615850e-47 |
| Msa0558360 | Msa0618970 | 0.810102 | 1.362242e-50 | -8.615850e-47 |
| Msa0558360 | Msa0667790 | 0.806489 | 8.022740e-50 | -8.615850e-47 |
| Msa0558360 | Msa0688390 | 0.806098 | 9.701776e-50 | -8.615850e-47 |
| Msa0558360 | Msa0707250 | 0.817334 | 3.479733e-52 | -8.615850e-47 |
| Msa0558360 | Msa0711150 | 0.805720 | 1.164703e-49 | -8.615850e-47 |
| Msa0558360 | Msa0724170 | 0.805188 | 1.505639e-49 | -8.615850e-47 |
| Msa0558360 | Msa0741070 | 0.804239 | 2.376718e-49 | -8.615850e-47 |
| Msa0558360 | Msa0741440 | 0.812114 | 4.988754e-51 | -8.615850e-47 |
| Msa0558360 | Msa0743930 | 0.803187 | 3.929328e-49 | -8.615850e-47 |
| Msa0558360 | Msa0749440 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
| Msa0558360 | Msa0751850 | 0.831869 | 1.307176e-55 | -8.615850e-47 |
| Msa0558360 | Msa0784480 | 0.839273 | 1.749152e-57 | -8.615850e-47 |
| Msa0558360 | Msa0797250 | 0.806579 | 7.681665e-50 | -8.615850e-47 |
| Msa0558360 | Msa0811520 | 0.819778 | 9.713456e-53 | -8.615850e-47 |
| Msa0558360 | Msa0816130 | 0.808929 | 2.432366e-50 | -8.615850e-47 |
| Msa0558360 | Msa0817460 | 0.820210 | 7.738257e-53 | -8.615850e-47 |
| Msa0558360 | Msa0822500 | 0.834603 | 2.724256e-56 | -8.615850e-47 |
| Msa0558360 | Msa0831110 | 0.820515 | 6.586285e-53 | -8.615850e-47 |
| Msa0558360 | Msa0831850 | 0.811263 | 7.641565e-51 | -8.615850e-47 |
| Msa0558360 | Msa0847900 | 0.815391 | 9.469380e-52 | -8.615850e-47 |
| Msa0558360 | Msa0867010 | 0.826488 | 2.638779e-54 | -8.615850e-47 |
| Msa0558360 | Msa0878220 | 0.803637 | 3.170283e-49 | -8.615850e-47 |
| Msa0558360 | Msa0880810 | 0.811027 | 8.596004e-51 | -8.615850e-47 |
| Msa0558360 | Msa0894710 | 0.800010 | 1.761135e-48 | -8.615850e-47 |
| Msa0558360 | Msa0902830 | 0.850249 | 1.918180e-60 | -8.615850e-47 |
| Msa0558360 | Msa1032770 | 0.826275 | 2.967116e-54 | -8.615850e-47 |
| Msa0558360 | Msa1034500 | 0.832274 | 1.037752e-55 | -8.615850e-47 |
| Msa0558360 | Msa1036610 | 0.803588 | 3.244526e-49 | -8.615850e-47 |
| Msa0558360 | Msa1048220 | 0.813327 | 2.707338e-51 | -8.615850e-47 |
| Msa0558360 | Msa1063420 | 0.808131 | 3.600974e-50 | -8.615850e-47 |
| Msa0558360 | Msa1089450 | 0.818998 | 1.462434e-52 | -8.615850e-47 |
| Msa0558360 | Msa1104560 | 0.839426 | 1.596391e-57 | -8.615850e-47 |
| Msa0558360 | Msa1148090 | 0.830836 | 2.346388e-55 | -8.615850e-47 |
| Msa0558360 | Msa1150850 | 0.800954 | 1.130855e-48 | -8.615850e-47 |
| Msa0558360 | Msa1162780 | 0.800130 | 1.664628e-48 | -8.615850e-47 |
| Msa0558360 | Msa1207310 | 0.820066 | 8.344775e-53 | -8.615850e-47 |
| Msa0558360 | Msa1213980 | 0.811957 | 5.398920e-51 | -8.615850e-47 |
| Msa0558360 | Msa1218580 | 0.807499 | 4.905440e-50 | -8.615850e-47 |
| Msa0558360 | Msa1246360 | 0.808246 | 3.402545e-50 | -8.615850e-47 |
| Msa0558360 | Msa1264420 | 0.820244 | 7.598772e-53 | -8.615850e-47 |
| Msa0558360 | Msa1265280 | 0.843908 | 1.049055e-58 | -8.615850e-47 |
| Msa0558360 | Msa1286610 | 0.802135 | 6.476151e-49 | -8.615850e-47 |
| Msa0558360 | Msa1306560 | 0.806163 | 9.398648e-50 | -8.615850e-47 |
| Msa0558360 | Msa1308870 | 0.807186 | 5.716218e-50 | -8.615850e-47 |
| Msa0558360 | Msa1322630 | 0.814065 | 1.862355e-51 | -8.615850e-47 |
| Msa0558360 | Msa1325410 | -0.815229 | 1.028936e-51 | -8.615850e-47 |
| Msa0558360 | Msa1337480 | 0.843229 | 1.593092e-58 | -8.615850e-47 |
| Msa0558360 | Msa1345940 | 0.805043 | 1.614595e-49 | -8.615850e-47 |
| Msa0558360 | Msa1346840 | 0.819898 | 9.120636e-53 | -8.615850e-47 |
| Msa0558360 | Msa1371940 | 0.812993 | 3.204662e-51 | -8.615850e-47 |
| Msa0558360 | Msa1372150 | 0.813860 | 2.066991e-51 | -8.615850e-47 |
| Msa0558360 | Msa1394380 | 0.801554 | 8.525421e-49 | -8.615850e-47 |
| Msa0558360 | Msa1407190 | 0.812348 | 4.435611e-51 | -8.615850e-47 |
| Msa0558360 | Msa1412130 | 0.814795 | 1.284053e-51 | -8.615850e-47 |
| Msa0558360 | Msa1425260 | 0.818235 | 2.178680e-52 | -8.615850e-47 |
| Msa0558360 | Msa1432130 | 0.818277 | 2.132121e-52 | -8.615850e-47 |
| Msa0558360 | Msa1433350 | 0.801850 | 7.413083e-49 | -8.615850e-47 |
| Msa0558360 | Msa1436600 | 0.801619 | 8.265082e-49 | -8.615850e-47 |
| Msa0558360 | Msa1444560 | 0.803620 | 3.195194e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558360 | MtrunA17_Chr4g0047981 | 91.961 | 311 | 4 | 1 | 1 | 290 | 1 | 311 | 0.0 | 579 |
| Msa0558360 | MtrunA17_Chr2g0281411 | 71.096 | 301 | 43 | 3 | 1 | 280 | 1 | 278 | 2.24e-152 | 427 |
| Msa0558360 | MtrunA17_Chr4g0022441 | 66.559 | 311 | 75 | 4 | 3 | 290 | 2 | 306 | 2.38e-133 | 380 |
| Msa0558360 | MtrunA17_Chr5g0409961 | 54.054 | 296 | 79 | 6 | 1 | 270 | 1 | 265 | 8.06e-106 | 308 |
| Msa0558360 | MtrunA17_Chr2g0323921 | 54.070 | 172 | 78 | 1 | 118 | 289 | 29 | 199 | 1.24e-60 | 191 |
| Msa0558360 | MtrunA17_Chr2g0323931 | 61.224 | 98 | 33 | 1 | 5 | 102 | 6 | 98 | 1.44e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558360 | AT1G11180.1 | 63.810 | 315 | 63 | 5 | 1 | 289 | 1 | 290 | 2.83e-140 | 397 |
| Msa0558360 | AT1G61250.1 | 63.578 | 313 | 65 | 6 | 1 | 289 | 1 | 288 | 8.68e-140 | 396 |
| Msa0558360 | AT1G11180.3 | 61.905 | 315 | 62 | 6 | 1 | 289 | 1 | 283 | 3.30e-132 | 376 |
| Msa0558360 | AT1G11180.2 | 59.451 | 328 | 62 | 6 | 1 | 289 | 1 | 296 | 4.98e-130 | 371 |
| Msa0558360 | AT2G20840.1 | 62.460 | 309 | 67 | 4 | 3 | 290 | 2 | 282 | 2.78e-125 | 358 |
| Msa0558360 | AT1G61250.2 | 62.587 | 286 | 58 | 6 | 1 | 262 | 1 | 261 | 4.57e-123 | 353 |
| Msa0558360 | AT1G03550.1 | 55.987 | 309 | 88 | 3 | 3 | 290 | 2 | 283 | 1.57e-116 | 337 |
| Msa0558360 | AT2G20840.3 | 69.456 | 239 | 52 | 1 | 73 | 290 | 1 | 239 | 3.18e-112 | 324 |
| Msa0558360 | AT2G20840.2 | 69.456 | 239 | 52 | 1 | 73 | 290 | 1 | 239 | 3.18e-112 | 324 |
| Msa0558360 | AT1G32050.1 | 52.721 | 294 | 85 | 6 | 1 | 271 | 1 | 263 | 8.38e-103 | 301 |
| Msa0558360 | AT1G03550.4 | 55.516 | 281 | 77 | 3 | 3 | 262 | 2 | 255 | 2.37e-102 | 300 |
| Msa0558360 | AT1G03550.3 | 60.538 | 223 | 67 | 1 | 89 | 290 | 2 | 224 | 7.68e-93 | 274 |
| Msa0558360 | AT1G03550.5 | 53.846 | 260 | 72 | 3 | 3 | 241 | 2 | 234 | 7.88e-89 | 265 |
| Msa0558360 | AT1G03550.2 | 60.476 | 210 | 62 | 1 | 102 | 290 | 15 | 224 | 1.77e-85 | 256 |
| Msa0558360 | AT1G03550.6 | 55.556 | 243 | 60 | 3 | 3 | 224 | 2 | 217 | 3.04e-84 | 252 |
| Msa0558360 | AT1G03550.7 | 54.299 | 221 | 53 | 3 | 3 | 202 | 2 | 195 | 2.22e-76 | 231 |
Find 78 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCATTTACTACATATT+TGG | 0.085998 | 4_1:+57055676 | Msa0558360:CDS |
| GCAATGTCGTGATGGATAAT+TGG | 0.196761 | 4_1:-57055617 | None:intergenic |
| GCCATTATCTACTTCATATC+AGG | 0.219332 | 4_1:+57056144 | Msa0558360:CDS |
| CCTGCTGATTATAATAATTA+TGG | 0.242414 | 4_1:+57053787 | Msa0558360:CDS |
| GATAAGCATTTGGGTTATTC+AGG | 0.247223 | 4_1:+57057120 | Msa0558360:CDS |
| ACAGAAAGTGCTCTGAAATT+TGG | 0.255387 | 4_1:+57056358 | Msa0558360:CDS |
| GATTATAATAATTATGGCTT+TGG | 0.323050 | 4_1:+57053793 | Msa0558360:CDS |
| TTGGCAGGTGGAACACTTCC+AGG | 0.333344 | 4_1:-57053733 | None:intergenic |
| ATAGACAACTCTACTTTGAT+TGG | 0.339286 | 4_1:+57056887 | Msa0558360:CDS |
| TGGAAGCGTTGATAAGCATT+TGG | 0.341712 | 4_1:+57057110 | Msa0558360:CDS |
| CGACATTGCTAATGAAATTC+CGG | 0.348677 | 4_1:+57055631 | Msa0558360:CDS |
| CACCACCACTGTAGTTTGAT+TGG | 0.353619 | 4_1:-57052915 | None:intergenic |
| GCAGTATGGATTACCTTTGC+AGG | 0.363030 | 4_1:+57057367 | Msa0558360:three_prime_UTR |
| AAATACAAAAGAATTGTCTT+TGG | 0.367130 | 4_1:-57051636 | None:intergenic |
| GTTGCATTTACTACATATTT+GGG | 0.367478 | 4_1:+57055677 | Msa0558360:CDS |
| AAATGCTTATCAACGCTTCC+AGG | 0.379371 | 4_1:-57057108 | None:intergenic |
| TCTTCTCAAATCAGCCTCCT+TGG | 0.380522 | 4_1:-57054008 | None:intergenic |
| AAAGAAGAACTTACAGAAAA+GGG | 0.387916 | 4_1:-57051858 | None:intergenic |
| GTGATCCTAGTCTTGTTATC+AGG | 0.402729 | 4_1:+57057646 | Msa0558360:three_prime_UTR |
| CAATGTCGTGATGGATAATT+GGG | 0.404575 | 4_1:-57055616 | None:intergenic |
| GGAAGCGTTGATAAGCATTT+GGG | 0.408499 | 4_1:+57057111 | Msa0558360:CDS |
| AGAGTTGTCTATCACATCTA+TGG | 0.411851 | 4_1:-57056876 | None:intergenic |
| TAGACAACTCTACTTTGATT+GGG | 0.415020 | 4_1:+57056888 | Msa0558360:CDS |
| AAAAGAAGAACTTACAGAAA+AGG | 0.421381 | 4_1:-57051859 | None:intergenic |
| TCAAATCAGCCTCCTTGGAT+TGG | 0.431822 | 4_1:-57054003 | None:intergenic |
| TTAACTTCTTCTTCATCAAA+GGG | 0.448107 | 4_1:-57051834 | None:intergenic |
| TACTTCATATCAGGGGTACC+TGG | 0.455209 | 4_1:+57056153 | Msa0558360:CDS |
| CCCTGATATGAAGTAGATAA+TGG | 0.455504 | 4_1:-57056145 | None:intergenic |
| AGGAGGCTGATTTGAGAAGA+AGG | 0.459934 | 4_1:+57054011 | Msa0558360:CDS |
| CAACAATTCTGAACTTAAAG+AGG | 0.466251 | 4_1:-57057669 | None:intergenic |
| GTTAACTTCTTCTTCATCAA+AGG | 0.471618 | 4_1:-57051835 | None:intergenic |
| TTGTTCTTGAGGAAAAGAAT+TGG | 0.479685 | 4_1:+57055582 | Msa0558360:CDS |
| TTATTATAATCAGCAGGCTC+TGG | 0.486525 | 4_1:-57053781 | None:intergenic |
| CACCATCGTCACAGATCTCA+TGG | 0.493848 | 4_1:+57051791 | Msa0558360:intron |
| GTAAGGCTGCCGAGATGAAA+CGG | 0.494572 | 4_1:+57057288 | Msa0558360:CDS |
| TGATTTGAGAAGAAGGGAAC+AGG | 0.499440 | 4_1:+57054018 | Msa0558360:CDS |
| AGATGAAACGGGACGTTGCA+AGG | 0.501921 | 4_1:+57057300 | Msa0558360:CDS |
| CTAACAGGAACCAGCTGCAA+GGG | 0.502793 | 4_1:+57052879 | Msa0558360:intron |
| TACATGTACTTCCGCGGAAG+TGG | 0.512831 | 4_1:+57057266 | Msa0558360:CDS |
| GTACTTCCGCGGAAGTGGTA+AGG | 0.515999 | 4_1:+57057271 | Msa0558360:CDS |
| TGCAACGTCCCGTTTCATCT+CGG | 0.534516 | 4_1:-57057297 | None:intergenic |
| CCATTATCTACTTCATATCA+GGG | 0.537386 | 4_1:+57056145 | Msa0558360:CDS |
| TAAGGCTGCCGAGATGAAAC+GGG | 0.537761 | 4_1:+57057289 | Msa0558360:CDS |
| CCATAATTATTATAATCAGC+AGG | 0.544102 | 4_1:-57053787 | None:intergenic |
| TTCTCTAGATATTGTGCTAG+TGG | 0.550270 | 4_1:+57057592 | Msa0558360:three_prime_UTR |
| AGATTTGACATAACAGTGGC+TGG | 0.552967 | 4_1:+57057539 | Msa0558360:three_prime_UTR |
| ATCGTCACAGATCTCATGGC+TGG | 0.555595 | 4_1:+57051795 | Msa0558360:intron |
| AAAGTGCTCTGAAATTTGGA+TGG | 0.555769 | 4_1:+57056362 | Msa0558360:CDS |
| TTTCCTTTGAAAACTATAGG+AGG | 0.556106 | 4_1:-57056567 | None:intergenic |
| TGCAGCTGGAATTGTTCTTG+AGG | 0.560259 | 4_1:+57055571 | Msa0558360:intron |
| GATGAAACGGGACGTTGCAA+GGG | 0.564195 | 4_1:+57057301 | Msa0558360:CDS |
| TCAGCAGGCTCTGGCTCAAG+AGG | 0.572777 | 4_1:-57053772 | None:intergenic |
| GGAGGCTGATTTGAGAAGAA+GGG | 0.574251 | 4_1:+57054012 | Msa0558360:CDS |
| TACCACAGAACATATGCTCC+AGG | 0.578297 | 4_1:-57056171 | None:intergenic |
| TTTCATTAGCAATGTCGTGA+TGG | 0.578986 | 4_1:-57055625 | None:intergenic |
| CAGTATGGATTACCTTTGCA+GGG | 0.579548 | 4_1:+57057368 | Msa0558360:three_prime_UTR |
| TTCTGCTTACAGGTTCACAT+AGG | 0.596304 | 4_1:+57056519 | Msa0558360:intron |
| GGAGAAGGAACTCCAATCCA+AGG | 0.597039 | 4_1:+57053991 | Msa0558360:CDS |
| ACATATATTGATCCCTGCAA+AGG | 0.599370 | 4_1:-57057380 | None:intergenic |
| TAACATGTTAGCTATTCATG+TGG | 0.606456 | 4_1:+57057492 | Msa0558360:three_prime_UTR |
| TACCTGGAGCATATGTTCTG+TGG | 0.610432 | 4_1:+57056169 | Msa0558360:CDS |
| ACTAACAGGAACCAGCTGCA+AGG | 0.617019 | 4_1:+57052878 | Msa0558360:intron |
| AGAGGCCTGATAACAAGACT+AGG | 0.620293 | 4_1:-57057651 | None:intergenic |
| AGACAACTCTACTTTGATTG+GGG | 0.620543 | 4_1:+57056889 | Msa0558360:CDS |
| CATACCGTTGATGTATCAAG+AGG | 0.630477 | 4_1:-57053832 | None:intergenic |
| AAGAAGAACTTACAGAAAAG+GGG | 0.636378 | 4_1:-57051857 | None:intergenic |
| AGCCAATCAAACTACAGTGG+TGG | 0.647558 | 4_1:+57052913 | Msa0558360:CDS |
| AAAGAAGAAGCTGCTGCACG+AGG | 0.652474 | 4_1:+57055191 | Msa0558360:CDS |
| ATGAAACGGGACGTTGCAAG+GGG | 0.655559 | 4_1:+57057302 | Msa0558360:CDS |
| TAACAGGAACCAGCTGCAAG+GGG | 0.655833 | 4_1:+57052880 | Msa0558360:intron |
| TAACTTCTTCTTCATCAAAG+GGG | 0.656707 | 4_1:-57051833 | None:intergenic |
| CGGCAGCCTTACCACTTCCG+CGG | 0.663150 | 4_1:-57057277 | None:intergenic |
| CAAGTATACATGTACTTCCG+CGG | 0.676518 | 4_1:+57057260 | Msa0558360:CDS |
| TATACCTCTTGATACATCAA+CGG | 0.679523 | 4_1:+57053828 | Msa0558360:CDS |
| CATTATCTACTTCATATCAG+GGG | 0.696824 | 4_1:+57056146 | Msa0558360:CDS |
| TCAAGCCAATCAAACTACAG+TGG | 0.718625 | 4_1:+57052910 | Msa0558360:CDS |
| GCAGAGATTTGACATAACAG+TGG | 0.738594 | 4_1:+57057535 | Msa0558360:three_prime_UTR |
| GAAGGAACTCCAATCCAAGG+AGG | 0.750966 | 4_1:+57053994 | Msa0558360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr4_1:57054390-57054409 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr4_1:57054390-57054409 | Msa0558360:intron | 0.0% |
| !!! | GAATTTTTATTATTTTCATA+TGG | + | chr4_1:57053394-57053413 | Msa0558360:intron | 10.0% |
| !!! | ATTTTTATTATTTTCATATG+GGG | + | chr4_1:57053396-57053415 | Msa0558360:intron | 10.0% |
| !! | TATATAAATGATAATAACTT+CGG | - | chr4_1:57056806-57056825 | None:intergenic | 10.0% |
| !! | AAAAAAATAAAGAATTGTGT+TGG | - | chr4_1:57051737-57051756 | None:intergenic | 15.0% |
| !!! | TTGTTTTAGTTGTTAAATTT+TGG | + | chr4_1:57051982-57052001 | Msa0558360:intron | 15.0% |
| !!! | CAATTTGAAATTAAAATAGA+GGG | - | chr4_1:57052289-57052308 | None:intergenic | 15.0% |
| !!! | TCAATTTGAAATTAAAATAG+AGG | - | chr4_1:57052290-57052309 | None:intergenic | 15.0% |
| !! | TGAACATAAATAATTATAAC+CGG | - | chr4_1:57052975-57052994 | None:intergenic | 15.0% |
| !! | TAAAAGATTTGCAAAATAAT+AGG | - | chr4_1:57053255-57053274 | None:intergenic | 15.0% |
| !!! | TATTATTTTGCAAATCTTTT+AGG | + | chr4_1:57053254-57053273 | Msa0558360:intron | 15.0% |
| !! | AAAAGATATAATTCATTACA+AGG | - | chr4_1:57053565-57053584 | None:intergenic | 15.0% |
| !! | ATATCATATCTTACAAAAAA+TGG | - | chr4_1:57053624-57053643 | None:intergenic | 15.0% |
| !! | TTATTATCCATTTCAATATT+AGG | + | chr4_1:57053955-57053974 | Msa0558360:intron | 15.0% |
| !! | ATATATATATATATAGGTTG+AGG | + | chr4_1:57054446-57054465 | Msa0558360:intron | 15.0% |
| !!! | TATATATATATATAGGTTGA+GGG | + | chr4_1:57054447-57054466 | Msa0558360:intron | 15.0% |
| !! | TAATATCATTATTCAATAGT+TGG | - | chr4_1:57054554-57054573 | None:intergenic | 15.0% |
| !!! | TTATTTCTAATTTCTAATAG+TGG | - | chr4_1:57054785-57054804 | None:intergenic | 15.0% |
| !!! | TTCTGAAACAAATATAAATA+CGG | - | chr4_1:57055230-57055249 | None:intergenic | 15.0% |
| !! | TCATTTATATAATCTAATGT+TGG | + | chr4_1:57056815-57056834 | Msa0558360:intron | 15.0% |
| !! | TATACATTATAAGAAAATCA+TGG | - | chr4_1:57057209-57057228 | None:intergenic | 15.0% |
| !! | AAATACAAAAGAATTGTCTT+TGG | - | chr4_1:57051639-57051658 | None:intergenic | 20.0% |
| !! | ATGAATAAAGTCAAATGAAA+TGG | - | chr4_1:57051766-57051785 | None:intergenic | 20.0% |
| !!! | AAAGTTTTGTTTTTTTCAAC+TGG | + | chr4_1:57051886-57051905 | Msa0558360:intron | 20.0% |
| !!! | AAGTTTTGTTTTTTTCAACT+GGG | + | chr4_1:57051887-57051906 | Msa0558360:intron | 20.0% |
| !!! | TTTAGTTGTTAAATTTTGGT+TGG | + | chr4_1:57051986-57052005 | Msa0558360:intron | 20.0% |
| !!! | AAGTATCTATTTTTAGTTGT+TGG | + | chr4_1:57052068-57052087 | Msa0558360:intron | 20.0% |
| !!! | TTTGCACTATATTTTGATTT+TGG | + | chr4_1:57052262-57052281 | Msa0558360:intron | 20.0% |
| !!! | ACATTAGCTTTATTAGAATT+TGG | - | chr4_1:57052680-57052699 | None:intergenic | 20.0% |
| !!! | ATATGATCTATTTGAAGTTA+GGG | + | chr4_1:57052752-57052771 | Msa0558360:intron | 20.0% |
| !! | ATAAGATCAAAATGATTTAC+AGG | - | chr4_1:57053677-57053696 | None:intergenic | 20.0% |
| !! | GATTATAATAATTATGGCTT+TGG | + | chr4_1:57053793-57053812 | Msa0558360:CDS | 20.0% |
| !! | ACATGCAAATACATTATAAA+TGG | - | chr4_1:57053901-57053920 | None:intergenic | 20.0% |
| !! | TTCAAATCCTAATATTGAAA+TGG | - | chr4_1:57053965-57053984 | None:intergenic | 20.0% |
| !! | ATATTAGGATTTGAAAAAGA+AGG | + | chr4_1:57053970-57053989 | Msa0558360:intron | 20.0% |
| !!! | ATACTTTTGAGAGTTATAAT+TGG | + | chr4_1:57054280-57054299 | Msa0558360:intron | 20.0% |
| !! | AGATAAAATTAGACATTGAT+AGG | + | chr4_1:57054601-57054620 | Msa0558360:intron | 20.0% |
| !! | GTTATATGTTAAAATGAAGT+TGG | + | chr4_1:57054668-57054687 | Msa0558360:intron | 20.0% |
| !!! | TTTTAAAACTGTATGAGATT+TGG | + | chr4_1:57054710-57054729 | Msa0558360:intron | 20.0% |
| !! | ATTCTTAAAGAGAAATACAA+TGG | + | chr4_1:57054743-57054762 | Msa0558360:intron | 20.0% |
| !! | ATATAAAACAATCAGATTCT+TGG | - | chr4_1:57054894-57054913 | None:intergenic | 20.0% |
| !!! | TTTATATCATTTCTGAAGTT+TGG | + | chr4_1:57054907-57054926 | Msa0558360:intron | 20.0% |
| !! | TTATTTATTTATCCAAATGC+AGG | + | chr4_1:57055157-57055176 | Msa0558360:intron | 20.0% |
| !!! | TCTGAAACAAATATAAATAC+GGG | - | chr4_1:57055229-57055248 | None:intergenic | 20.0% |
| !! | TAGTTTAGATATGTAAAAGA+AGG | + | chr4_1:57055871-57055890 | Msa0558360:intron | 20.0% |
| !!! | TGTAAAAGAAGGTTTTTTTT+TGG | + | chr4_1:57055882-57055901 | Msa0558360:intron | 20.0% |
| !! | CATAACTTATGTACATTAAT+TGG | - | chr4_1:57056459-57056478 | None:intergenic | 20.0% |
| !! | GAAAGAAAATTTGTAAACTT+TGG | + | chr4_1:57056746-57056765 | Msa0558360:intron | 20.0% |
| !! | GAAGAAAAATATTATTCTGA+TGG | + | chr4_1:57057426-57057445 | Msa0558360:three_prime_UTR | 20.0% |
| ! | AAGTTGTAAAAGAAAGAAGA+AGG | - | chr4_1:57051688-57051707 | None:intergenic | 25.0% |
| ! | TTAACTTCTTCTTCATCAAA+GGG | - | chr4_1:57051837-57051856 | None:intergenic | 25.0% |
| ! | AAAGAAGAACTTACAGAAAA+GGG | - | chr4_1:57051861-57051880 | None:intergenic | 25.0% |
| ! | AAAAGAAGAACTTACAGAAA+AGG | - | chr4_1:57051862-57051881 | None:intergenic | 25.0% |
| ! | ATCTTGATTTCATCCTTTAA+AGG | + | chr4_1:57051928-57051947 | Msa0558360:intron | 25.0% |
| ! | TCTTGATTTCATCCTTTAAA+GGG | + | chr4_1:57051929-57051948 | Msa0558360:intron | 25.0% |
| !!! | TTAAATTTTGGTTGGTACTA+TGG | + | chr4_1:57051994-57052013 | Msa0558360:intron | 25.0% |
| !!! | TATTTTTTAGAATTCAGCTC+AGG | + | chr4_1:57052198-57052217 | Msa0558360:intron | 25.0% |
| ! | TTGTGTAACTATAACTGTAT+TGG | + | chr4_1:57052231-57052250 | Msa0558360:intron | 25.0% |
| ! | TATTTCAACAGCTATTTGAT+GGG | - | chr4_1:57052492-57052511 | None:intergenic | 25.0% |
| ! | ATATTTCAACAGCTATTTGA+TGG | - | chr4_1:57052493-57052512 | None:intergenic | 25.0% |
| !! | CTTGAAAAGGTGTATATAAA+TGG | + | chr4_1:57052603-57052622 | Msa0558360:intron | 25.0% |
| !! | AAAAGGTGTATATAAATGGA+AGG | + | chr4_1:57052607-57052626 | Msa0558360:intron | 25.0% |
| ! | CTTTATTAGAATTTGGATTG+GGG | - | chr4_1:57052673-57052692 | None:intergenic | 25.0% |
| !! | GCTTTATTAGAATTTGGATT+GGG | - | chr4_1:57052674-57052693 | None:intergenic | 25.0% |
| !!! | AGCTTTATTAGAATTTGGAT+TGG | - | chr4_1:57052675-57052694 | None:intergenic | 25.0% |
| !! | GATATGATCTATTTGAAGTT+AGG | + | chr4_1:57052751-57052770 | Msa0558360:intron | 25.0% |
| !! | TATGATCTATTTGAAGTTAG+GGG | + | chr4_1:57052753-57052772 | Msa0558360:intron | 25.0% |
| ! | TGAGTTTATTAATCAAACAC+CGG | + | chr4_1:57052953-57052972 | Msa0558360:intron | 25.0% |
| ! | TTTATGCATGTAAACATGAA+TGG | + | chr4_1:57053094-57053113 | Msa0558360:intron | 25.0% |
| !!! | ACATAATCAGCAAAGTTTTT+TGG | - | chr4_1:57053302-57053321 | None:intergenic | 25.0% |
| ! | ACAAATGTTTCAATGGTTAT+TGG | - | chr4_1:57053459-57053478 | None:intergenic | 25.0% |
| ! | AATAACCATTGAAACATTTG+TGG | + | chr4_1:57053458-57053477 | Msa0558360:intron | 25.0% |
| ! | TTTGTGGAGTAAAATTATTG+AGG | + | chr4_1:57053474-57053493 | Msa0558360:intron | 25.0% |
| ! | ATAATTCATTACAAGGTAGT+GGG | - | chr4_1:57053558-57053577 | None:intergenic | 25.0% |
| ! | TATAATTCATTACAAGGTAG+TGG | - | chr4_1:57053559-57053578 | None:intergenic | 25.0% |
| !! | TTTTTACAATCTGAACTCTA+AGG | + | chr4_1:57053581-57053600 | Msa0558360:intron | 25.0% |
| ! | CATATCTTACAAAAAATGGA+TGG | - | chr4_1:57053620-57053639 | None:intergenic | 25.0% |
| !!! | TTTTTAAAATGTCAGAATCC+TGG | + | chr4_1:57053715-57053734 | Msa0558360:intron | 25.0% |
| ! | CCATAATTATTATAATCAGC+AGG | - | chr4_1:57053790-57053809 | None:intergenic | 25.0% |
| !! | CCTGCTGATTATAATAATTA+TGG | + | chr4_1:57053787-57053806 | Msa0558360:CDS | 25.0% |
| ! | TGGAAAGAAAAAAAAAACTG+AGG | - | chr4_1:57053881-57053900 | None:intergenic | 25.0% |
| ! | CAAGAATCAATGTTATATGA+TGG | - | chr4_1:57054217-57054236 | None:intergenic | 25.0% |
| ! | TTCCACAAAATGCTATTAAA+TGG | - | chr4_1:57054515-57054534 | None:intergenic | 25.0% |
| ! | TTAAAGAGAAATACAATGGT+TGG | + | chr4_1:57054747-57054766 | Msa0558360:intron | 25.0% |
| ! | AAATTGTTACAACCGAAATT+AGG | + | chr4_1:57054948-57054967 | Msa0558360:intron | 25.0% |
| ! | ATAAGTATCTAGAAATTCAC+AGG | + | chr4_1:57055116-57055135 | Msa0558360:intron | 25.0% |
| !! | TAAATTGCTATTACTGTTTG+AGG | + | chr4_1:57055299-57055318 | Msa0558360:intron | 25.0% |
| ! | TTCTGCTTAATTCTTCTAAT+AGG | + | chr4_1:57055532-57055551 | Msa0558360:intron | 25.0% |
| ! | TGTTGCATTTACTACATATT+TGG | + | chr4_1:57055676-57055695 | Msa0558360:CDS | 25.0% |
| ! | GTTGCATTTACTACATATTT+GGG | + | chr4_1:57055677-57055696 | Msa0558360:CDS | 25.0% |
| ! | TACCTAAAAACACGATATAA+TGG | - | chr4_1:57056201-57056220 | None:intergenic | 25.0% |
| !! | CATATTTAGAATCAAGAGTA+TGG | - | chr4_1:57056320-57056339 | None:intergenic | 25.0% |
| !!! | GATTTTCCTTTGAAAACTAT+AGG | - | chr4_1:57056573-57056592 | None:intergenic | 25.0% |
| !!! | CTTTTTTGACTACATTTTTG+TGG | + | chr4_1:57056644-57056663 | Msa0558360:intron | 25.0% |
| !!! | AACAATTCTGAAGTTTACTT+AGG | - | chr4_1:57057033-57057052 | None:intergenic | 25.0% |
| !! | TTGTAGATTTTCTACTTCAT+TGG | + | chr4_1:57057070-57057089 | Msa0558360:intron | 25.0% |
| !! | ATTTTCTACTTCATTGGATT+TGG | + | chr4_1:57057076-57057095 | Msa0558360:CDS | 25.0% |
| ! | TGAATGAGCTTAAAGATAAT+CGG | - | chr4_1:57057171-57057190 | None:intergenic | 25.0% |
| !! | CATTCTGATATATCATTTTG+TGG | + | chr4_1:57057339-57057358 | Msa0558360:exon | 25.0% |
| TTGTAAAAGAAAGAAGAAGG+TGG | - | chr4_1:57051685-57051704 | None:intergenic | 30.0% | |
| TAACTTCTTCTTCATCAAAG+GGG | - | chr4_1:57051836-57051855 | None:intergenic | 30.0% | |
| GTTAACTTCTTCTTCATCAA+AGG | - | chr4_1:57051838-57051857 | None:intergenic | 30.0% | |
| AAGAAGAACTTACAGAAAAG+GGG | - | chr4_1:57051860-57051879 | None:intergenic | 30.0% | |
| ! | AGTCTAAAACAACCCTTTAA+AGG | - | chr4_1:57051944-57051963 | None:intergenic | 30.0% |
| !! | TTTCTGTATTGATGATGATG+TGG | + | chr4_1:57052311-57052330 | Msa0558360:intron | 30.0% |
| !! | AATGCCCTTTTTGTTTGTTA+TGG | + | chr4_1:57052335-57052354 | Msa0558360:intron | 30.0% |
| CATGCCATAACAAACAAAAA+GGG | - | chr4_1:57052342-57052361 | None:intergenic | 30.0% | |
| TCATGCCATAACAAACAAAA+AGG | - | chr4_1:57052343-57052362 | None:intergenic | 30.0% | |
| CTCTAATGCGATCTAAATTT+GGG | - | chr4_1:57052469-57052488 | None:intergenic | 30.0% | |
| ! | TCATTATAAGACGGATTTGT+AGG | + | chr4_1:57052636-57052655 | Msa0558360:intron | 30.0% |
| ! | CATTATAAGACGGATTTGTA+GGG | + | chr4_1:57052637-57052656 | Msa0558360:intron | 30.0% |
| ! | TACCGTGTTTTCCTTAATTT+CGG | + | chr4_1:57052850-57052869 | Msa0558360:intron | 30.0% |
| ! | GTTAGTTTAGACCGAAATTA+AGG | - | chr4_1:57052864-57052883 | None:intergenic | 30.0% |
| TAATTTCGGTCTAAACTAAC+AGG | + | chr4_1:57052864-57052883 | Msa0558360:intron | 30.0% | |
| AAGTCACAAGTAACAACAAT+AGG | + | chr4_1:57053023-57053042 | Msa0558360:intron | 30.0% | |
| CAAGTAACAACAATAGGTTA+TGG | + | chr4_1:57053029-57053048 | Msa0558360:intron | 30.0% | |
| AATGAAGATGCATAAAGAAG+AGG | + | chr4_1:57053186-57053205 | Msa0558360:intron | 30.0% | |
| TTACTCCACAAATGTTTCAA+TGG | - | chr4_1:57053466-57053485 | None:intergenic | 30.0% | |
| CTAAAGTTAAATTGTATCGC+TGG | - | chr4_1:57053520-57053539 | None:intergenic | 30.0% | |
| ! | GTAGTGGGATTTATAAAAAC+TGG | - | chr4_1:57053543-57053562 | None:intergenic | 30.0% |
| TATACCTCTTGATACATCAA+CGG | + | chr4_1:57053828-57053847 | Msa0558360:CDS | 30.0% | |
| ! | TGTGTCTTTTTGTTCACTTT+AGG | + | chr4_1:57054059-57054078 | Msa0558360:intron | 30.0% |
| GAAATGAGAAATGAAAACAG+AGG | - | chr4_1:57054144-57054163 | None:intergenic | 30.0% | |
| ACAGAAATATGGATATGGAA+GGG | - | chr4_1:57054174-57054193 | None:intergenic | 30.0% | |
| AACAGAAATATGGATATGGA+AGG | - | chr4_1:57054175-57054194 | None:intergenic | 30.0% | |
| CTCAAACAGAAATATGGATA+TGG | - | chr4_1:57054179-57054198 | None:intergenic | 30.0% | |
| AGACTTCTCAAACAGAAATA+TGG | - | chr4_1:57054185-57054204 | None:intergenic | 30.0% | |
| TTTGAGAAGTCTTAAATAGC+TGG | + | chr4_1:57054337-57054356 | Msa0558360:intron | 30.0% | |
| !! | TGCCATTTAATAGCATTTTG+TGG | + | chr4_1:57054510-57054529 | Msa0558360:intron | 30.0% |
| ! | TGTCCTGCAGAATTTTATTA+AGG | + | chr4_1:57055378-57055397 | Msa0558360:intron | 30.0% |
| AGACCTTAATAAAATTCTGC+AGG | - | chr4_1:57055384-57055403 | None:intergenic | 30.0% | |
| CAGAACTAAATTTGTAGAGA+AGG | - | chr4_1:57055517-57055536 | None:intergenic | 30.0% | |
| TTGTTCTTGAGGAAAAGAAT+TGG | + | chr4_1:57055582-57055601 | Msa0558360:CDS | 30.0% | |
| ! | TGATGGATAATTGGGAAAAA+TGG | - | chr4_1:57055611-57055630 | None:intergenic | 30.0% |
| !! | TGCAATTTTTGAAGATGAAC+CGG | - | chr4_1:57055653-57055672 | None:intergenic | 30.0% |
| ! | ATGATACAGCTTTTAATCAG+TGG | - | chr4_1:57055782-57055801 | None:intergenic | 30.0% |
| TTGACACAGGTGTAAAAATT+TGG | + | chr4_1:57056115-57056134 | Msa0558360:intron | 30.0% | |
| ! | AGGTGTAAAAATTTGGTTTC+TGG | + | chr4_1:57056122-57056141 | Msa0558360:intron | 30.0% |
| CCATTATCTACTTCATATCA+GGG | + | chr4_1:57056145-57056164 | Msa0558360:CDS | 30.0% | |
| CATTATCTACTTCATATCAG+GGG | + | chr4_1:57056146-57056165 | Msa0558360:CDS | 30.0% | |
| ! | GTCCATTATATCGTGTTTTT+AGG | + | chr4_1:57056196-57056215 | Msa0558360:CDS | 30.0% |
| ATTATGAAACTGCAACAAGT+TGG | + | chr4_1:57056272-57056291 | Msa0558360:intron | 30.0% | |
| TTATGAAACTGCAACAAGTT+GGG | + | chr4_1:57056273-57056292 | Msa0558360:intron | 30.0% | |
| ! | ATGGTTTTTCATGCTTTATC+TGG | + | chr4_1:57056381-57056400 | Msa0558360:CDS | 30.0% |
| ! | TTTCCTTTGAAAACTATAGG+AGG | - | chr4_1:57056570-57056589 | None:intergenic | 30.0% |
| TGTTTATTCACACTGATACA+GGG | + | chr4_1:57056841-57056860 | Msa0558360:intron | 30.0% | |
| ATAGACAACTCTACTTTGAT+TGG | + | chr4_1:57056887-57056906 | Msa0558360:CDS | 30.0% | |
| TAGACAACTCTACTTTGATT+GGG | + | chr4_1:57056888-57056907 | Msa0558360:CDS | 30.0% | |
| TAGGTCACATTTGCAATATT+TGG | - | chr4_1:57057014-57057033 | None:intergenic | 30.0% | |
| CTTAAAGATAATCGGAAACT+TGG | - | chr4_1:57057163-57057182 | None:intergenic | 30.0% | |
| CTCATTCAGTTAGCATTTAA+AGG | + | chr4_1:57057183-57057202 | Msa0558360:intron | 30.0% | |
| ! | GATATATCATTTTGTGGAGA+AGG | + | chr4_1:57057345-57057364 | Msa0558360:exon | 30.0% |
| ! | ATTTTTCTTCACATTGTGTG+TGG | - | chr4_1:57057416-57057435 | None:intergenic | 30.0% |
| TAACATGTTAGCTATTCATG+TGG | + | chr4_1:57057492-57057511 | Msa0558360:three_prime_UTR | 30.0% | |
| ! | TTTTCTCAAGTTTCTTCAAC+AGG | + | chr4_1:57057622-57057641 | Msa0558360:three_prime_UTR | 30.0% |
| CAACAATTCTGAACTTAAAG+AGG | - | chr4_1:57057672-57057691 | None:intergenic | 30.0% | |
| AAGGTGATAGATGTGACATT+AGG | - | chr4_1:57052411-57052430 | None:intergenic | 35.0% | |
| ACATCTATCACCTTACTAGT+CGG | + | chr4_1:57052417-57052436 | Msa0558360:intron | 35.0% | |
| AATGCGATCTAAATTTGGGT+TGG | - | chr4_1:57052465-57052484 | None:intergenic | 35.0% | |
| GCTCTAATGCGATCTAAATT+TGG | - | chr4_1:57052470-57052489 | None:intergenic | 35.0% | |
| GTCTCACATTAGATGTGATA+CGG | + | chr4_1:57052580-57052599 | Msa0558360:intron | 35.0% | |
| AGGCATCTCTCATTATAAGA+CGG | + | chr4_1:57052627-57052646 | Msa0558360:intron | 35.0% | |
| ! | ATTTGGATTGGGGTTATCTT+AGG | - | chr4_1:57052663-57052682 | None:intergenic | 35.0% |
| GACCGAAATTAAGGAAAACA+CGG | - | chr4_1:57052855-57052874 | None:intergenic | 35.0% | |
| TGGAGTTAGTGCTAAAGATT+AGG | + | chr4_1:57053059-57053078 | Msa0558360:intron | 35.0% | |
| AGTTAGTGCTAAAGATTAGG+AGG | + | chr4_1:57053062-57053081 | Msa0558360:intron | 35.0% | |
| AGTTAAATTGTATCGCTGGA+TGG | - | chr4_1:57053516-57053535 | None:intergenic | 35.0% | |
| ! | AGGTGAAAGCCTTGAATTTT+TGG | - | chr4_1:57053755-57053774 | None:intergenic | 35.0% |
| TTATTATAATCAGCAGGCTC+TGG | - | chr4_1:57053784-57053803 | None:intergenic | 35.0% | |
| GGATTTGAAAAAGAAGGAGA+AGG | + | chr4_1:57053976-57053995 | Msa0558360:intron | 35.0% | |
| CAGAAATATGGATATGGAAG+GGG | - | chr4_1:57054173-57054192 | None:intergenic | 35.0% | |
| AGACTTCTCAAACAGAAAGA+TGG | - | chr4_1:57054329-57054348 | None:intergenic | 35.0% | |
| TGGCAAAACTTGAAAGTTTC+AGG | - | chr4_1:57054495-57054514 | None:intergenic | 35.0% | |
| GTTAAAATGAAGTTGGCTGA+TGG | + | chr4_1:57054675-57054694 | Msa0558360:intron | 35.0% | |
| AGACTTACTCCTGAAATAAG+TGG | + | chr4_1:57054838-57054857 | Msa0558360:intron | 35.0% | |
| GAATAGGATCCACTTATTTC+AGG | - | chr4_1:57054850-57054869 | None:intergenic | 35.0% | |
| ACATGAACGAATGCAAGAAT+AGG | - | chr4_1:57054866-57054885 | None:intergenic | 35.0% | |
| TCCAGAGATCAACCTAATTT+CGG | - | chr4_1:57054963-57054982 | None:intergenic | 35.0% | |
| AGTTAACTTTGCCTGCATAA+GGG | + | chr4_1:57055067-57055086 | Msa0558360:intron | 35.0% | |
| !! | AAGTTGATAAACCCTTATGC+AGG | - | chr4_1:57055081-57055100 | None:intergenic | 35.0% |
| ! | ATTGCTATTACTGTTTGAGG+TGG | + | chr4_1:57055302-57055321 | Msa0558360:intron | 35.0% |
| !!! | TTGACATTTTGTTTTGCAGC+TGG | + | chr4_1:57055557-57055576 | Msa0558360:intron | 35.0% |
| TGGATAATTGGGAAAAATGG+CGG | - | chr4_1:57055608-57055627 | None:intergenic | 35.0% | |
| !! | CAATGTCGTGATGGATAATT+GGG | - | chr4_1:57055619-57055638 | None:intergenic | 35.0% |
| TTTCATTAGCAATGTCGTGA+TGG | - | chr4_1:57055628-57055647 | None:intergenic | 35.0% | |
| CGACATTGCTAATGAAATTC+CGG | + | chr4_1:57055631-57055650 | Msa0558360:CDS | 35.0% | |
| GTGATCCTCTTTATTGTTCT+TGG | + | chr4_1:57055703-57055722 | Msa0558360:intron | 35.0% | |
| TGGAACCAAGAACAATAAAG+AGG | - | chr4_1:57055711-57055730 | None:intergenic | 35.0% | |
| TCAAGAACCAATGGCATAAT+TGG | - | chr4_1:57055731-57055750 | None:intergenic | 35.0% | |
| ACACAATACTCAAGAACCAA+TGG | - | chr4_1:57055740-57055759 | None:intergenic | 35.0% | |
| !! | GTGTTCGTCATTTTATATCG+CGG | + | chr4_1:57055756-57055775 | Msa0558360:intron | 35.0% |
| GATTAAAAGCTGTATCATGC+AGG | + | chr4_1:57055784-57055803 | Msa0558360:intron | 35.0% | |
| CAGCTATAACATTCCACAAT+AGG | - | chr4_1:57055822-57055841 | None:intergenic | 35.0% | |
| TGCTAGAAATTCACCTCATA+AGG | + | chr4_1:57055918-57055937 | Msa0558360:intron | 35.0% | |
| ACCTCATAAGGTGAATAAGT+GGG | + | chr4_1:57055930-57055949 | Msa0558360:intron | 35.0% | |
| TGAGCATAGCTCAATTGATA+GGG | - | chr4_1:57056001-57056020 | None:intergenic | 35.0% | |
| ATGAGCATAGCTCAATTGAT+AGG | - | chr4_1:57056002-57056021 | None:intergenic | 35.0% | |
| TATCAATTGAGCTATGCTCA+TGG | + | chr4_1:57056001-57056020 | Msa0558360:intron | 35.0% | |
| ATCAATTGAGCTATGCTCAT+GGG | + | chr4_1:57056002-57056021 | Msa0558360:intron | 35.0% | |
| GCCATTATCTACTTCATATC+AGG | + | chr4_1:57056144-57056163 | Msa0558360:CDS | 35.0% | |
| CCCTGATATGAAGTAGATAA+TGG | - | chr4_1:57056148-57056167 | None:intergenic | 35.0% | |
| !! | ATATGCACCTTTTTCATTGC+AGG | + | chr4_1:57056335-57056354 | Msa0558360:intron | 35.0% |
| TTTCTGTCCTGCAATGAAAA+AGG | - | chr4_1:57056345-57056364 | None:intergenic | 35.0% | |
| !! | ACAGAAAGTGCTCTGAAATT+TGG | + | chr4_1:57056358-57056377 | Msa0558360:CDS | 35.0% |
| !! | AAAGTGCTCTGAAATTTGGA+TGG | + | chr4_1:57056362-57056381 | Msa0558360:CDS | 35.0% |
| ! | TTGTTTCTTCTTCTGCTTAC+AGG | + | chr4_1:57056509-57056528 | Msa0558360:intron | 35.0% |
| ! | TTGTTTTCCTTGCAGAAGAT+AGG | + | chr4_1:57056687-57056706 | Msa0558360:intron | 35.0% |
| AAGTAAACCTATCTTCTGCA+AGG | - | chr4_1:57056697-57056716 | None:intergenic | 35.0% | |
| CTGTTTATTCACACTGATAC+AGG | + | chr4_1:57056840-57056859 | Msa0558360:intron | 35.0% | |
| GTTTATTCACACTGATACAG+GGG | + | chr4_1:57056842-57056861 | Msa0558360:intron | 35.0% | |
| AGAGTTGTCTATCACATCTA+TGG | - | chr4_1:57056879-57056898 | None:intergenic | 35.0% | |
| AGACAACTCTACTTTGATTG+GGG | + | chr4_1:57056889-57056908 | Msa0558360:CDS | 35.0% | |
| ! | GATAAGCATTTGGGTTATTC+AGG | + | chr4_1:57057120-57057139 | Msa0558360:CDS | 35.0% |
| !!! | ATAGCTGCTCACTTTTTCTT+TGG | + | chr4_1:57057226-57057245 | Msa0558360:intron | 35.0% |
| ACATATATTGATCCCTGCAA+AGG | - | chr4_1:57057383-57057402 | None:intergenic | 35.0% | |
| TTCTCTAGATATTGTGCTAG+TGG | + | chr4_1:57057592-57057611 | Msa0558360:three_prime_UTR | 35.0% | |
| AAAGAAAGAAGAAGGTGGTG+AGG | - | chr4_1:57051680-57051699 | None:intergenic | 40.0% | |
| ! | GTACTATGGTTGATGTGGTT+GGG | + | chr4_1:57052008-57052027 | Msa0558360:intron | 40.0% |
| ! | TACTATGGTTGATGTGGTTG+GGG | + | chr4_1:57052009-57052028 | Msa0558360:intron | 40.0% |
| GTCTCTTCGATTCTTTGTGT+AGG | + | chr4_1:57052090-57052109 | Msa0558360:intron | 40.0% | |
| AAGCCTGAGCTGAATTCTAA+AGG | - | chr4_1:57052124-57052143 | None:intergenic | 40.0% | |
| ! | GAATTCAGCTCAGGCTTTTT+AGG | + | chr4_1:57052127-57052146 | Msa0558360:intron | 40.0% |
| ! | AGAATTCAGCTCAGGCTTTT+AGG | + | chr4_1:57052126-57052145 | Msa0558360:intron | 40.0% |
| TGACATGAGTGGTTCAATAG+TGG | - | chr4_1:57052516-57052535 | None:intergenic | 40.0% | |
| AGATGTGATACGGCTTGAAA+AGG | + | chr4_1:57052590-57052609 | Msa0558360:intron | 40.0% | |
| ACACGGTAAATAAGTCAGCA+GGG | - | chr4_1:57052838-57052857 | None:intergenic | 40.0% | |
| AACACGGTAAATAAGTCAGC+AGG | - | chr4_1:57052839-57052858 | None:intergenic | 40.0% | |
| TCAAGCCAATCAAACTACAG+TGG | + | chr4_1:57052910-57052929 | Msa0558360:CDS | 40.0% | |
| CAATAGGTTATGGTCATCAG+TGG | + | chr4_1:57053039-57053058 | Msa0558360:intron | 40.0% | |
| ! | GCTTTTCTGTGATGCTTTTC+AGG | + | chr4_1:57053354-57053373 | Msa0558360:intron | 40.0% |
| !! | CAATCTGAACTCTAAGGTCT+AGG | + | chr4_1:57053587-57053606 | Msa0558360:intron | 40.0% |
| TTCCACCTGCCAAAAATTCA+AGG | + | chr4_1:57053743-57053762 | Msa0558360:CDS | 40.0% | |
| !!! | GAAAGCCTTGAATTTTTGGC+AGG | - | chr4_1:57053751-57053770 | None:intergenic | 40.0% |
| CATACCGTTGATGTATCAAG+AGG | - | chr4_1:57053835-57053854 | None:intergenic | 40.0% | |
| TTCTTGCAAGAATCGAACTG+AGG | + | chr4_1:57053922-57053941 | Msa0558360:intron | 40.0% | |
| TGATTTGAGAAGAAGGGAAC+AGG | + | chr4_1:57054018-57054037 | Msa0558360:CDS | 40.0% | |
| AGAAGGGAACAGGTATACAA+TGG | + | chr4_1:57054028-57054047 | Msa0558360:intron | 40.0% | |
| GAAGGGAACAGGTATACAAT+GGG | + | chr4_1:57054029-57054048 | Msa0558360:intron | 40.0% | |
| TCTCGGTAAATATCCACTGA+GGG | - | chr4_1:57054094-57054113 | None:intergenic | 40.0% | |
| ATCTCGGTAAATATCCACTG+AGG | - | chr4_1:57054095-57054114 | None:intergenic | 40.0% | |
| CAGTGGATATTTACCGAGAT+TGG | + | chr4_1:57054095-57054114 | Msa0558360:intron | 40.0% | |
| CGGTACAAATGTTCCAATCT+CGG | - | chr4_1:57054111-57054130 | None:intergenic | 40.0% | |
| AAAGTTTCAGGACTTTCCCT+CGG | - | chr4_1:57054483-57054502 | None:intergenic | 40.0% | |
| !! | ACCGAAATTAGGTTGATCTC+TGG | + | chr4_1:57054959-57054978 | Msa0558360:intron | 40.0% |
| GAAGACAGCGTGATTTAATG+AGG | - | chr4_1:57055012-57055031 | None:intergenic | 40.0% | |
| CAGTTAACTTTGCCTGCATA+AGG | + | chr4_1:57055066-57055085 | Msa0558360:intron | 40.0% | |
| TGCACTAATTTAGTCCTGCT+TGG | + | chr4_1:57055421-57055440 | Msa0558360:intron | 40.0% | |
| AGAAACAAAAAGAGCCAAGC+AGG | - | chr4_1:57055438-57055457 | None:intergenic | 40.0% | |
| !! | GCAATGTCGTGATGGATAAT+TGG | - | chr4_1:57055620-57055639 | None:intergenic | 40.0% |
| CTTGGTTCCAATTATGCCAT+TGG | + | chr4_1:57055721-57055740 | Msa0558360:intron | 40.0% | |
| TTATAGCTGTTACTGCTGCT+TGG | + | chr4_1:57055833-57055852 | Msa0558360:intron | 40.0% | |
| ! | TGTTACTGCTGCTTGGATTA+AGG | + | chr4_1:57055840-57055859 | Msa0558360:intron | 40.0% |
| ! | GTTACTGCTGCTTGGATTAA+GGG | + | chr4_1:57055841-57055860 | Msa0558360:intron | 40.0% |
| !! | TGAGGTGAATTTCTAGCAAC+TGG | - | chr4_1:57055916-57055935 | None:intergenic | 40.0% |
| CACCTCATAAGGTGAATAAG+TGG | + | chr4_1:57055929-57055948 | Msa0558360:intron | 40.0% | |
| CCTCATAAGGTGAATAAGTG+GGG | + | chr4_1:57055931-57055950 | Msa0558360:intron | 40.0% | |
| TGCATGTAATATGCAGGAGT+CGG | - | chr4_1:57055974-57055993 | None:intergenic | 40.0% | |
| GGACATTGCATGTAATATGC+AGG | - | chr4_1:57055980-57055999 | None:intergenic | 40.0% | |
| TCAATTGAGCTATGCTCATG+GGG | + | chr4_1:57056003-57056022 | Msa0558360:intron | 40.0% | |
| !! | AACATGGCTTTGTTTGACAC+AGG | + | chr4_1:57056102-57056121 | Msa0558360:intron | 40.0% |
| TTCTGCTTACAGGTTCACAT+AGG | + | chr4_1:57056519-57056538 | Msa0558360:intron | 40.0% | |
| ! | GCTCCTCCTATAGTTTTCAA+AGG | + | chr4_1:57056564-57056583 | Msa0558360:CDS | 40.0% |
| ATTGAGTGCGTAGAGTAAGT+TGG | - | chr4_1:57056607-57056626 | None:intergenic | 40.0% | |
| ! | TGGATTTGGATTTTTCTGCC+TGG | + | chr4_1:57057090-57057109 | Msa0558360:CDS | 40.0% |
| AAATGCTTATCAACGCTTCC+AGG | - | chr4_1:57057111-57057130 | None:intergenic | 40.0% | |
| !! | TGGAAGCGTTGATAAGCATT+TGG | + | chr4_1:57057110-57057129 | Msa0558360:CDS | 40.0% |
| !! | GGAAGCGTTGATAAGCATTT+GGG | + | chr4_1:57057111-57057130 | Msa0558360:CDS | 40.0% |
| CAAGTATACATGTACTTCCG+CGG | + | chr4_1:57057260-57057279 | Msa0558360:CDS | 40.0% | |
| ! | ATTTTGTGGAGAAGGCAGTA+TGG | + | chr4_1:57057353-57057372 | Msa0558360:three_prime_UTR | 40.0% |
| ! | CAGTATGGATTACCTTTGCA+GGG | + | chr4_1:57057368-57057387 | Msa0558360:three_prime_UTR | 40.0% |
| GCAGAGATTTGACATAACAG+TGG | + | chr4_1:57057535-57057554 | Msa0558360:three_prime_UTR | 40.0% | |
| AGATTTGACATAACAGTGGC+TGG | + | chr4_1:57057539-57057558 | Msa0558360:three_prime_UTR | 40.0% | |
| !! | GTGATCCTAGTCTTGTTATC+AGG | + | chr4_1:57057646-57057665 | Msa0558360:three_prime_UTR | 40.0% |
| TGGTGAGGTGAGGTAATTAC+AGG | - | chr4_1:57051665-57051684 | None:intergenic | 45.0% | |
| ! | GGTTGGTACTATGGTTGATG+TGG | + | chr4_1:57052003-57052022 | Msa0558360:intron | 45.0% |
| ! | GGTACTATGGTTGATGTGGT+TGG | + | chr4_1:57052007-57052026 | Msa0558360:intron | 45.0% |
| !!! | GTTGGGGAAACTGGTTTTTG+AGG | + | chr4_1:57052025-57052044 | Msa0558360:intron | 45.0% |
| !! | GTGCCTTTAGAATTCAGCTC+AGG | + | chr4_1:57052118-57052137 | Msa0558360:intron | 45.0% |
| !! | ACCTTACTAGTCGGTGTTGT+GGG | + | chr4_1:57052426-57052445 | Msa0558360:intron | 45.0% |
| TATGTAGAGCGTGACATGAG+TGG | - | chr4_1:57052527-57052546 | None:intergenic | 45.0% | |
| ACGCTCTACATATCCAATCC+TGG | + | chr4_1:57052535-57052554 | Msa0558360:intron | 45.0% | |
| CGCTCTACATATCCAATCCT+GGG | + | chr4_1:57052536-57052555 | Msa0558360:intron | 45.0% | |
| AGCCAATCAAACTACAGTGG+TGG | + | chr4_1:57052913-57052932 | Msa0558360:CDS | 45.0% | |
| CACCACCACTGTAGTTTGAT+TGG | - | chr4_1:57052918-57052937 | None:intergenic | 45.0% | |
| !!! | AGCCTTGAATTTTTGGCAGG+TGG | - | chr4_1:57053748-57053767 | None:intergenic | 45.0% |
| TCAAATCAGCCTCCTTGGAT+TGG | - | chr4_1:57054006-57054025 | None:intergenic | 45.0% | |
| TCTTCTCAAATCAGCCTCCT+TGG | - | chr4_1:57054011-57054030 | None:intergenic | 45.0% | |
| !! | AGGAGGCTGATTTGAGAAGA+AGG | + | chr4_1:57054011-57054030 | Msa0558360:CDS | 45.0% |
| !! | GGAGGCTGATTTGAGAAGAA+GGG | + | chr4_1:57054012-57054031 | Msa0558360:CDS | 45.0% |
| !! | AAAACAGAGGAGAGCATCAG+CGG | - | chr4_1:57054131-57054150 | None:intergenic | 45.0% |
| TTCGTCTCACTTCCTGCATT+TGG | - | chr4_1:57055172-57055191 | None:intergenic | 45.0% | |
| TGCAGCTGGAATTGTTCTTG+AGG | + | chr4_1:57055571-57055590 | Msa0558360:intron | 45.0% | |
| CCCCACTTATTCACCTTATG+AGG | - | chr4_1:57055934-57055953 | None:intergenic | 45.0% | |
| AGGTGAATAAGTGGGGAGTT+CGG | + | chr4_1:57055938-57055957 | Msa0558360:intron | 45.0% | |
| CATGTAATATGCAGGAGTCG+GGG | - | chr4_1:57055972-57055991 | None:intergenic | 45.0% | |
| GCATGTAATATGCAGGAGTC+GGG | - | chr4_1:57055973-57055992 | None:intergenic | 45.0% | |
| CAATTGAGCTATGCTCATGG+GGG | + | chr4_1:57056004-57056023 | Msa0558360:intron | 45.0% | |
| TGTTTCATGCGCATGGCATT+AGG | - | chr4_1:57056086-57056105 | None:intergenic | 45.0% | |
| AATGCCATGCGCATGAAACA+TGG | + | chr4_1:57056086-57056105 | Msa0558360:intron | 45.0% | |
| AAAGCCATGTTTCATGCGCA+TGG | - | chr4_1:57056093-57056112 | None:intergenic | 45.0% | |
| !! | TACTTCATATCAGGGGTACC+TGG | + | chr4_1:57056153-57056172 | Msa0558360:CDS | 45.0% |
| TACCTGGAGCATATGTTCTG+TGG | + | chr4_1:57056169-57056188 | Msa0558360:CDS | 45.0% | |
| TACCACAGAACATATGCTCC+AGG | - | chr4_1:57056174-57056193 | None:intergenic | 45.0% | |
| !!! | CTGCTCACTTTTTCTTTGGC+TGG | + | chr4_1:57057230-57057249 | Msa0558360:intron | 45.0% |
| ! | GCAGTATGGATTACCTTTGC+AGG | + | chr4_1:57057367-57057386 | Msa0558360:three_prime_UTR | 45.0% |
| AGAGGCCTGATAACAAGACT+AGG | - | chr4_1:57057654-57057673 | None:intergenic | 45.0% | |
| !!! | AATTTTTATTATTTTCATAT+GGG | + | chr4_1:57053395-57053414 | Msa0558360:intron | 5.0% |
| AAGAAGAAGGTGGTGAGGTG+AGG | - | chr4_1:57051675-57051694 | None:intergenic | 50.0% | |
| CACCATCGTCACAGATCTCA+TGG | + | chr4_1:57051791-57051810 | Msa0558360:intron | 50.0% | |
| AGCCATGAGATCTGTGACGA+TGG | - | chr4_1:57051796-57051815 | None:intergenic | 50.0% | |
| ATCGTCACAGATCTCATGGC+TGG | + | chr4_1:57051795-57051814 | Msa0558360:intron | 50.0% | |
| GTTGATGTGGTTGGGGAAAC+TGG | + | chr4_1:57052016-57052035 | Msa0558360:intron | 50.0% | |
| !! | CACCTTACTAGTCGGTGTTG+TGG | + | chr4_1:57052425-57052444 | Msa0558360:intron | 50.0% |
| !! | CCTTACTAGTCGGTGTTGTG+GGG | + | chr4_1:57052427-57052446 | Msa0558360:intron | 50.0% |
| !! | CTTACTAGTCGGTGTTGTGG+GGG | + | chr4_1:57052428-57052447 | Msa0558360:intron | 50.0% |
| CATATCCAATCCTGGGTGTG+AGG | + | chr4_1:57052543-57052562 | Msa0558360:intron | 50.0% | |
| ACTAACAGGAACCAGCTGCA+AGG | + | chr4_1:57052878-57052897 | Msa0558360:intron | 50.0% | |
| CTAACAGGAACCAGCTGCAA+GGG | + | chr4_1:57052879-57052898 | Msa0558360:intron | 50.0% | |
| TAACAGGAACCAGCTGCAAG+GGG | + | chr4_1:57052880-57052899 | Msa0558360:intron | 50.0% | |
| ! | GATGTTTTTCCCCTTGCAGC+TGG | - | chr4_1:57052892-57052911 | None:intergenic | 50.0% |
| GGAGAAGGAACTCCAATCCA+AGG | + | chr4_1:57053991-57054010 | Msa0558360:CDS | 50.0% | |
| GAAGGAACTCCAATCCAAGG+AGG | + | chr4_1:57053994-57054013 | Msa0558360:CDS | 50.0% | |
| ! | TAGGTTGAGAGTTCCCTCAG+TGG | + | chr4_1:57054078-57054097 | Msa0558360:intron | 50.0% |
| ! | TTGAGGGTGCATTTAGTCCG+AGG | + | chr4_1:57054463-57054482 | Msa0558360:intron | 50.0% |
| ! | TGAGGGTGCATTTAGTCCGA+GGG | + | chr4_1:57054464-57054483 | Msa0558360:intron | 50.0% |
| AAAGAAGAAGCTGCTGCACG+AGG | + | chr4_1:57055191-57055210 | Msa0558360:CDS | 50.0% | |
| GCTGTATCATGCAGGACTAG+TGG | + | chr4_1:57055792-57055811 | Msa0558360:intron | 50.0% | |
| ! | GACTAGTGGCTTGCCTATTG+TGG | + | chr4_1:57055806-57055825 | Msa0558360:intron | 50.0% |
| GCTGCTTGGATTAAGGGTGA+AGG | + | chr4_1:57055847-57055866 | Msa0558360:intron | 50.0% | |
| GGTGAATAAGTGGGGAGTTC+GGG | + | chr4_1:57055939-57055958 | Msa0558360:intron | 50.0% | |
| GTGAATAAGTGGGGAGTTCG+GGG | + | chr4_1:57055940-57055959 | Msa0558360:intron | 50.0% | |
| CTCATGGGGGCTATAGAAGA+AGG | + | chr4_1:57056017-57056036 | Msa0558360:intron | 50.0% | |
| ! | GAGTAAGTTGGCGTACGTCA+GGG | - | chr4_1:57056595-57056614 | None:intergenic | 50.0% |
| ! | AGAGTAAGTTGGCGTACGTC+AGG | - | chr4_1:57056596-57056615 | None:intergenic | 50.0% |
| TACATGTACTTCCGCGGAAG+TGG | + | chr4_1:57057266-57057285 | Msa0558360:CDS | 50.0% | |
| GTAAGGCTGCCGAGATGAAA+CGG | + | chr4_1:57057288-57057307 | Msa0558360:CDS | 50.0% | |
| TAAGGCTGCCGAGATGAAAC+GGG | + | chr4_1:57057289-57057308 | Msa0558360:CDS | 50.0% | |
| TGCAACGTCCCGTTTCATCT+CGG | - | chr4_1:57057300-57057319 | None:intergenic | 50.0% | |
| AGATGAAACGGGACGTTGCA+AGG | + | chr4_1:57057300-57057319 | Msa0558360:CDS | 50.0% | |
| GATGAAACGGGACGTTGCAA+GGG | + | chr4_1:57057301-57057320 | Msa0558360:CDS | 50.0% | |
| ATGAAACGGGACGTTGCAAG+GGG | + | chr4_1:57057302-57057321 | Msa0558360:CDS | 50.0% | |
| ! | CCCCACAACACCGACTAGTA+AGG | - | chr4_1:57052430-57052449 | None:intergenic | 55.0% |
| ACACTCCTCACACCCAGGAT+TGG | - | chr4_1:57052551-57052570 | None:intergenic | 55.0% | |
| AACACACACTCCTCACACCC+AGG | - | chr4_1:57052556-57052575 | None:intergenic | 55.0% | |
| TTGGCAGGTGGAACACTTCC+AGG | - | chr4_1:57053736-57053755 | None:intergenic | 55.0% | |
| GTACTTCCGCGGAAGTGGTA+AGG | + | chr4_1:57057271-57057290 | Msa0558360:CDS | 55.0% | |
| ! | TCAGCAGGCTCTGGCTCAAG+AGG | - | chr4_1:57053775-57053794 | None:intergenic | 60.0% |
| CGGCAGCCTTACCACTTCCG+CGG | - | chr4_1:57057280-57057299 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57051553 | 57057710 | 57051553 | ID=Msa0558360;Name=Msa0558360 |
| chr4_1 | mRNA | 57051553 | 57057710 | 57051553 | ID=Msa0558360-mRNA-1;Parent=Msa0558360;Name=Msa0558360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=117|0.91|1|1|0.75|0.76|13|364|290 |
| chr4_1 | exon | 57051553 | 57051664 | 57051553 | ID=Msa0558360-mRNA-1:exon:17235;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57051805 | 57051866 | 57051805 | ID=Msa0558360-mRNA-1:exon:17236;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57052886 | 57052951 | 57052886 | ID=Msa0558360-mRNA-1:exon:17237;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57053730 | 57053849 | 57053730 | ID=Msa0558360-mRNA-1:exon:17238;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57053977 | 57054039 | 57053977 | ID=Msa0558360-mRNA-1:exon:17239;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57055179 | 57055212 | 57055179 | ID=Msa0558360-mRNA-1:exon:17240;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57055576 | 57055698 | 57055576 | ID=Msa0558360-mRNA-1:exon:17241;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57056124 | 57056217 | 57056124 | ID=Msa0558360-mRNA-1:exon:17242;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57056357 | 57056402 | 57056357 | ID=Msa0558360-mRNA-1:exon:17243;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57056531 | 57056598 | 57056531 | ID=Msa0558360-mRNA-1:exon:17244;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57056862 | 57056910 | 57056862 | ID=Msa0558360-mRNA-1:exon:17245;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57057076 | 57057141 | 57057076 | ID=Msa0558360-mRNA-1:exon:17246;Parent=Msa0558360-mRNA-1 |
| chr4_1 | exon | 57057260 | 57057710 | 57057260 | ID=Msa0558360-mRNA-1:exon:17247;Parent=Msa0558360-mRNA-1 |
| chr4_1 | five_prime_UTR | 57051553 | 57051664 | 57051553 | ID=Msa0558360-mRNA-1:five_prime_utr;Parent=Msa0558360-mRNA-1 |
| chr4_1 | five_prime_UTR | 57051805 | 57051809 | 57051805 | ID=Msa0558360-mRNA-1:five_prime_utr;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57051810 | 57051866 | 57051810 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57052886 | 57052951 | 57052886 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57053730 | 57053849 | 57053730 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57053977 | 57054039 | 57053977 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57055179 | 57055212 | 57055179 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57055576 | 57055698 | 57055576 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57056124 | 57056217 | 57056124 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57056357 | 57056402 | 57056357 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57056531 | 57056598 | 57056531 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57056862 | 57056910 | 57056862 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57057076 | 57057141 | 57057076 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | CDS | 57057260 | 57057346 | 57057260 | ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1 |
| chr4_1 | three_prime_UTR | 57057347 | 57057710 | 57057347 | ID=Msa0558360-mRNA-1:three_prime_utr;Parent=Msa0558360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
