AlfalfaGEDB | Msa0558360

M. sativa cultivar zhongmu-4 / Msa0558360

KEGG: K19995
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791
PFAM: PF04144.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558360	XP_003608188.2	91.961	311	4	1	1	290	1	311	0.0	579

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558360	sp\|A2YMP7\|SCAM1_ORYSI	67.628	312	73	4	1	290	1	306	1.90e-153	434

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558360	G7JQS3	91.961	311	4	1	1	290	1	311	0.0	579

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030160	Msa0558360	0.812765	3.595089e-51	-8.615850e-47
Msa0042550	Msa0558360	0.801493	8.774625e-49	-8.615850e-47
Msa0065680	Msa0558360	-0.807933	3.968059e-50	-8.615850e-47
Msa0092410	Msa0558360	0.812794	3.543071e-51	-8.615850e-47
Msa0103250	Msa0558360	0.806102	9.681497e-50	-8.615850e-47
Msa0138020	Msa0558360	0.820055	8.394776e-53	-8.615850e-47
Msa0160960	Msa0558360	0.800864	1.179982e-48	-8.615850e-47
Msa0178510	Msa0558360	0.818482	1.915929e-52	-8.615850e-47
Msa0186950	Msa0558360	0.805988	1.023068e-49	-8.615850e-47
Msa0189040	Msa0558360	0.825192	5.358476e-54	-8.615850e-47

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558360	MtrunA17_Chr4g0047981	91.961	311	4	1	1	290	1	311	0.0	579
Msa0558360	MtrunA17_Chr2g0281411	71.096	301	43	3	1	280	1	278	2.24e-152	427
Msa0558360	MtrunA17_Chr4g0022441	66.559	311	75	4	3	290	2	306	2.38e-133	380
Msa0558360	MtrunA17_Chr5g0409961	54.054	296	79	6	1	270	1	265	8.06e-106	308
Msa0558360	MtrunA17_Chr2g0323921	54.070	172	78	1	118	289	29	199	1.24e-60	191
Msa0558360	MtrunA17_Chr2g0323931	61.224	98	33	1	5	102	6	98	1.44e-33	119

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558360	AT1G11180.1	63.810	315	63	5	1	289	1	290	2.83e-140	397
Msa0558360	AT1G61250.1	63.578	313	65	6	1	289	1	288	8.68e-140	396
Msa0558360	AT1G11180.3	61.905	315	62	6	1	289	1	283	3.30e-132	376
Msa0558360	AT1G11180.2	59.451	328	62	6	1	289	1	296	4.98e-130	371
Msa0558360	AT2G20840.1	62.460	309	67	4	3	290	2	282	2.78e-125	358
Msa0558360	AT1G61250.2	62.587	286	58	6	1	262	1	261	4.57e-123	353
Msa0558360	AT1G03550.1	55.987	309	88	3	3	290	2	283	1.57e-116	337
Msa0558360	AT2G20840.3	69.456	239	52	1	73	290	1	239	3.18e-112	324
Msa0558360	AT2G20840.2	69.456	239	52	1	73	290	1	239	3.18e-112	324
Msa0558360	AT1G32050.1	52.721	294	85	6	1	271	1	263	8.38e-103	301

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 78 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAACTTACAGAAA+AGG	0.421381	4_1:-57051859	None:intergenic
AAAGAAGAACTTACAGAAAA+GGG	0.387916	4_1:-57051858	None:intergenic
AAAGAAGAAGCTGCTGCACG+AGG	0.652474	4_1:+57055191	Msa0558360:CDS
AAAGTGCTCTGAAATTTGGA+TGG	0.555769	4_1:+57056362	Msa0558360:CDS
AAATACAAAAGAATTGTCTT+TGG	0.367130	4_1:-57051636	None:intergenic
AAATGCTTATCAACGCTTCC+AGG	0.379371	4_1:-57057108	None:intergenic
AAGAAGAACTTACAGAAAAG+GGG	0.636378	4_1:-57051857	None:intergenic
ACAGAAAGTGCTCTGAAATT+TGG	0.255387	4_1:+57056358	Msa0558360:CDS
ACATATATTGATCCCTGCAA+AGG	0.599370	4_1:-57057380	None:intergenic
ACTAACAGGAACCAGCTGCA+AGG	0.617019	4_1:+57052878	Msa0558360:intron

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGTAAAAGAAAGAAGAAGG+TGG	-	chr4_1:57051685-57051704	None:intergenic	30.0%
TAACTTCTTCTTCATCAAAG+GGG	-	chr4_1:57051836-57051855	None:intergenic	30.0%
GTTAACTTCTTCTTCATCAA+AGG	-	chr4_1:57051838-57051857	None:intergenic	30.0%
AAGAAGAACTTACAGAAAAG+GGG	-	chr4_1:57051860-57051879	None:intergenic	30.0%
CATGCCATAACAAACAAAAA+GGG	-	chr4_1:57052342-57052361	None:intergenic	30.0%
TCATGCCATAACAAACAAAA+AGG	-	chr4_1:57052343-57052362	None:intergenic	30.0%
CTCTAATGCGATCTAAATTT+GGG	-	chr4_1:57052469-57052488	None:intergenic	30.0%
TAATTTCGGTCTAAACTAAC+AGG	+	chr4_1:57052864-57052883	Msa0558360:intron	30.0%
AAGTCACAAGTAACAACAAT+AGG	+	chr4_1:57053023-57053042	Msa0558360:intron	30.0%
CAAGTAACAACAATAGGTTA+TGG	+	chr4_1:57053029-57053048	Msa0558360:intron	30.0%

Showing 1 to 10 of 349 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	57051553	57057710	57051553	ID=Msa0558360;Name=Msa0558360
chr4_1	mRNA	57051553	57057710	57051553	ID=Msa0558360-mRNA-1;Parent=Msa0558360;Name=Msa0558360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=117\|0.91\|1\|1\|0.75\|0.76\|13\|364\|290
chr4_1	exon	57051553	57051664	57051553	ID=Msa0558360-mRNA-1:exon:17235;Parent=Msa0558360-mRNA-1
chr4_1	exon	57051805	57051866	57051805	ID=Msa0558360-mRNA-1:exon:17236;Parent=Msa0558360-mRNA-1
chr4_1	exon	57052886	57052951	57052886	ID=Msa0558360-mRNA-1:exon:17237;Parent=Msa0558360-mRNA-1
chr4_1	exon	57053730	57053849	57053730	ID=Msa0558360-mRNA-1:exon:17238;Parent=Msa0558360-mRNA-1
chr4_1	exon	57053977	57054039	57053977	ID=Msa0558360-mRNA-1:exon:17239;Parent=Msa0558360-mRNA-1
chr4_1	exon	57055179	57055212	57055179	ID=Msa0558360-mRNA-1:exon:17240;Parent=Msa0558360-mRNA-1
chr4_1	exon	57055576	57055698	57055576	ID=Msa0558360-mRNA-1:exon:17241;Parent=Msa0558360-mRNA-1
chr4_1	exon	57056124	57056217	57056124	ID=Msa0558360-mRNA-1:exon:17242;Parent=Msa0558360-mRNA-1
chr4_1	exon	57056357	57056402	57056357	ID=Msa0558360-mRNA-1:exon:17243;Parent=Msa0558360-mRNA-1
chr4_1	exon	57056531	57056598	57056531	ID=Msa0558360-mRNA-1:exon:17244;Parent=Msa0558360-mRNA-1
chr4_1	exon	57056862	57056910	57056862	ID=Msa0558360-mRNA-1:exon:17245;Parent=Msa0558360-mRNA-1
chr4_1	exon	57057076	57057141	57057076	ID=Msa0558360-mRNA-1:exon:17246;Parent=Msa0558360-mRNA-1
chr4_1	exon	57057260	57057710	57057260	ID=Msa0558360-mRNA-1:exon:17247;Parent=Msa0558360-mRNA-1
chr4_1	five_prime_UTR	57051553	57051664	57051553	ID=Msa0558360-mRNA-1:five_prime_utr;Parent=Msa0558360-mRNA-1
chr4_1	five_prime_UTR	57051805	57051809	57051805	ID=Msa0558360-mRNA-1:five_prime_utr;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57051810	57051866	57051810	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57052886	57052951	57052886	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57053730	57053849	57053730	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57053977	57054039	57053977	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57055179	57055212	57055179	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57055576	57055698	57055576	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57056124	57056217	57056124	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57056357	57056402	57056357	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57056531	57056598	57056531	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57056862	57056910	57056862	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57057076	57057141	57057076	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	CDS	57057260	57057346	57057260	ID=Msa0558360-mRNA-1:cds;Parent=Msa0558360-mRNA-1
chr4_1	three_prime_UTR	57057347	57057710	57057347	ID=Msa0558360-mRNA-1:three_prime_utr;Parent=Msa0558360-mRNA-1

Gene Sequence

>Msa0558360

ATGGCTGGTCGTTACGATAGCAACCCCTTTGATGAAGAAGAAGTTAACCCCTTTTCTGAACCAGCTGCAAGGGGAAAAACATCAAGCCAATCAAACTACAGTGGTGGTGCATTTTACACAACAAATCCTGGAAGTGTTCCACCTGCCAAAAATTCAAGGCTTTCACCTCTTGAGCCAGAGCCTGCTGATTATAATAATTATGGCTTTGGCGCAACAGTTGATATACCTCTTGATACATCAACGGATTTGAAAAAGAAGGAGAAGGAACTCCAATCCAAGGAGGCTGATTTGAGAAGAAGGGAACAGGAAGTGAGACGAAAAGAAGAAGCTGCTGCACGAGCTGGAATTGTTCTTGAGGAAAAGAATTGGCCGCCATTTTTCCCAATTATCCATCACGACATTGCTAATGAAATTCCGGTTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATATTTGGGTGTAAAAATTTGGTTTCTGGCCATTATCTACTTCATATCAGGGGTACCTGGAGCATATGTTCTGTGGTATCGTCCATTATATCGTGTTTTTAGGACAGAAAGTGCTCTGAAATTTGGATGGTTTTTCATGCTTTATCTGGTTCACATAGGATTCTGCATCTTAGCTGCTGTTGCTCCTCCTATAGTTTTCAAAGGAAAATCCCTGACGGGTATTCTATCTGCCATAGATGTGATAGACAACTCTACTTTGATTGGGATTTTCTACTTCATTGGATTTGGATTTTTCTGCCTGGAAGCGTTGATAAGCATTTGGGTTATTCAGCAAGTATACATGTACTTCCGCGGAAGTGGTAAGGCTGCCGAGATGAAACGGGACGTTGCAAGGGGAGCAGTGAGAGCTGCATTCTGA

Protein sequence

>Msa0558360

MAGRYDSNPFDEEEVNPFSEPAARGKTSSQSNYSGGAFYTTNPGSVPPAKNSRLSPLEPEPADYNNYGFGATVDIPLDTSTDLKKKEKELQSKEADLRRREQEVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPVHLQKLQYVAFTTYLGVKIWFLAIIYFISGVPGAYVLWYRPLYRVFRTESALKFGWFFMLYLVHIGFCILAAVAPPIVFKGKSLTGILSAIDVIDNSTLIGIFYFIGFGFFCLEALISIWVIQQVYMYFRGSGKAAEMKRDVARGAVRAAF*