AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036540 MtrunA17_Chr1g0199071 100.000 230 0 0 1 230 1 230 3.25e-173 475
Msa0036540 MtrunA17_Chr1g0163031 72.926 229 60 2 1 228 1 228 7.14e-121 343
Msa0036540 MtrunA17_Chr2g0321111 35.976 164 99 2 71 228 453 616 4.15e-27 108
Msa0036540 MtrunA17_Chr7g0266721 33.113 151 95 2 83 227 13 163 7.81e-23 90.9
Msa0036540 MtrunA17_Chr8g0351571 33.775 151 92 3 83 226 4 153 9.41e-19 80.1
Msa0036540 MtrunA17_Chr5g0401141 34.641 153 92 3 80 225 345 496 4.23e-18 82.8
Msa0036540 MtrunA17_Chr4g0045321 36.129 155 80 7 88 224 17 170 6.90e-17 78.6
Msa0036540 MtrunA17_Chr7g0270991 34.437 151 82 6 87 224 108 254 3.01e-16 75.5
Msa0036540 MtrunA17_Chr4g0038431 35.220 159 77 6 82 219 11 164 4.11e-15 70.9
Msa0036540 MtrunA17_Chr1g0213971 35.811 148 72 7 89 219 94 235 2.10e-14 70.1
Msa0036540 MtrunA17_Chr8g0374621 33.758 157 81 7 88 224 17 170 3.39e-14 70.9
Msa0036540 MtrunA17_Chr3g0145501 35.897 156 66 7 89 219 26 172 5.54e-14 68.2
Msa0036540 MtrunA17_Chr3g0104751 32.237 152 84 7 89 223 48 197 4.24e-13 65.9
Msa0036540 MtrunA17_Chr8g0353571 33.333 156 87 7 85 224 28 182 7.84e-13 64.7
Msa0036540 MtrunA17_Chr2g0288371 27.922 154 101 3 80 224 13 165 6.53e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036540 AT3G66654.4 59.657 233 88 3 1 227 1 233 1.64e-90 266
Msa0036540 AT3G66654.2 59.657 233 88 3 1 227 1 233 1.64e-90 266
Msa0036540 AT3G66654.3 59.657 233 88 3 1 227 1 233 1.64e-90 266
Msa0036540 AT3G66654.1 59.657 233 88 3 1 227 1 233 1.64e-90 266
Msa0036540 AT3G66654.5 59.657 233 88 3 1 227 1 233 1.64e-90 266
Msa0036540 AT2G47320.1 54.348 230 101 3 1 228 1 228 2.89e-79 238
Msa0036540 AT3G44600.1 36.000 175 101 3 60 228 461 630 3.69e-27 109
Msa0036540 AT2G36130.1 31.333 150 97 2 79 222 9 158 2.57e-21 87.4
Msa0036540 AT1G01940.1 32.667 150 95 2 83 226 4 153 3.97e-19 81.3
Msa0036540 AT5G67530.1 33.766 154 94 4 80 226 344 496 1.96e-18 84.0
Msa0036540 AT5G13120.1 35.762 151 76 6 89 224 107 251 5.21e-16 75.1
Msa0036540 AT5G13120.2 35.762 151 76 6 89 224 103 247 5.30e-16 75.1
Msa0036540 AT2G16600.1 35.374 147 77 6 87 216 17 162 1.58e-15 72.0
Msa0036540 AT2G15790.1 35.484 155 81 7 88 224 17 170 2.91e-15 74.3
Msa0036540 AT4G34870.1 35.135 148 80 5 86 217 15 162 1.79e-14 69.3
Msa0036540 AT2G29960.2 33.775 151 77 7 87 223 44 185 4.62e-13 65.9
Msa0036540 AT4G33060.1 28.966 145 93 3 80 215 13 156 1.06e-12 67.0
Msa0036540 AT3G56070.1 31.034 145 70 7 89 210 18 155 3.78e-11 60.5
Msa0036540 AT3G56070.2 31.034 145 70 7 89 210 18 155 3.78e-11 60.5

Find 80 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACAAAACTGGCCATTT+TGG 0.166485 1_1:-65127719 None:intergenic
TATGATAGGATTAGGTTAAA+TGG 0.203431 1_1:+65123290 Msa0036540:intron
TTGTAGGTTGAAAATAGTTT+TGG 0.284508 1_1:+65124790 Msa0036540:intron
TACACTCCTAAAATAACTAT+TGG 0.286009 1_1:+65127238 Msa0036540:CDS
AATGAGAAGCTTATTGTGTT+TGG 0.290264 1_1:+65126646 Msa0036540:CDS
AGTTTGCTTATAACCTGTTT+TGG 0.308387 1_1:+65127333 Msa0036540:three_prime_UTR
CTACGCTTTGATTCTTGTCT+TGG 0.316133 1_1:+65123395 Msa0036540:CDS
TATTAAGCACTATGTGATTC+AGG 0.332742 1_1:+65126370 Msa0036540:CDS
TTGACGAATTTATTGACTTA+TGG 0.343573 1_1:+65125058 Msa0036540:CDS
ATAAATTCGTCAACAGCTTC+AGG 0.351785 1_1:-65125048 None:intergenic
CATACAGACATTGGTCTAAC+AGG 0.351889 1_1:+65123439 Msa0036540:CDS
TTTCGTGTAGTTGGAGGCTT+TGG 0.353668 1_1:-65122731 None:intergenic
AATTTAGCAGTGAGCCAAAA+TGG 0.353974 1_1:+65127705 Msa0036540:three_prime_UTR
TCATCCCTGTACAAAAGATT+TGG 0.360099 1_1:-65127364 None:intergenic
TTTGTGTATGCTTGTAAGAT+TGG 0.373698 1_1:+65127568 Msa0036540:three_prime_UTR
TGATTTGTCTGCAGTCAAAA+AGG 0.376652 1_1:+65126317 Msa0036540:intron
TAAAGAGAATATTACAAAAC+TGG 0.381114 1_1:-65127728 None:intergenic
AATGAGAAATTTCGTGTAGT+TGG 0.381441 1_1:-65122740 None:intergenic
CAAGGGAGAGGATGTTGTTC+AGG 0.390816 1_1:+65126678 Msa0036540:CDS
AAAGAATAAGAAAACCTTGC+AGG 0.393868 1_1:-65126446 None:intergenic
GCAGGGGATGGTCAAGGAAC+AGG 0.397526 1_1:+65126392 Msa0036540:CDS
TAGGTCTTAAATACATCTAA+AGG 0.399050 1_1:+65124991 Msa0036540:intron
TTTGTTGGTGTGTTTGCCCT+TGG 0.409985 1_1:-65126581 None:intergenic
GCTTTGATTCTTGTCTTGGT+TGG 0.410038 1_1:+65123399 Msa0036540:CDS
ACACTCCTAAAATAACTATT+GGG 0.416681 1_1:+65127239 Msa0036540:CDS
ATAAGCTTCTCATTTAGATC+TGG 0.424089 1_1:-65126637 None:intergenic
TTTGGCCGGAGCACCAAAAC+AGG 0.432282 1_1:-65127346 None:intergenic
AAAGAGAGGAGTGAAGTAGA+AGG 0.455307 1_1:-65122870 None:intergenic
CAACATCAAGGCTCAAAAGC+TGG 0.462158 1_1:-65127421 None:intergenic
AAGGAACAGGAGCAGCTGAT+TGG 0.463623 1_1:+65126405 Msa0036540:CDS
TGACGACAATGTTGGAAAAC+TGG 0.466885 1_1:+65122707 None:intergenic
GAAAAGATCAAATCCTTTGT+TGG 0.478754 1_1:-65126596 None:intergenic
TTCTCATTTAGATCTGGAAT+CGG 0.478846 1_1:-65126631 None:intergenic
GAGAAATTTCGTGTAGTTGG+AGG 0.480954 1_1:-65122737 None:intergenic
AGGTCTTAAATACATCTAAA+GGG 0.486599 1_1:+65124992 Msa0036540:intron
CTCTGTTACAACAAAGCAAA+AGG 0.489993 1_1:+65123331 Msa0036540:CDS
GCAGCTGATTGGAACTTAAG+AGG 0.490971 1_1:+65126416 Msa0036540:CDS
AAAGGAAGAAGGGACCTTCT+CGG 0.493022 1_1:+65123349 Msa0036540:CDS
TTAGTTATGAACAGTGATGC+AGG 0.496818 1_1:+65127455 Msa0036540:three_prime_UTR
AATTATAAAGTAACAGAAAG+AGG 0.499364 1_1:-65127501 None:intergenic
GTAGAAGGTGGTGCAGTGAA+TGG 0.511310 1_1:-65122855 None:intergenic
CAACCCAGGTGAACTTCTAA+AGG 0.512996 1_1:-65127391 None:intergenic
ACAACAAAGCAAAAGGAAGA+AGG 0.520495 1_1:+65123338 Msa0036540:CDS
AATGTCTGTATGTAGCCAAA+AGG 0.524194 1_1:-65123428 None:intergenic
AAGCACTATGTGATTCAGGC+AGG 0.525167 1_1:+65126374 Msa0036540:CDS
TCGAAGAAATCTGAGCTACC+TGG 0.535071 1_1:+65124817 Msa0036540:CDS
CTTTGTTGTAACAGAGCCTG+AGG 0.536853 1_1:-65123324 None:intergenic
AATGGCTAGGATCAAACCTC+AGG 0.537124 1_1:+65123308 Msa0036540:exon
AAACATGAAGCATTCATGCT+TGG 0.537837 1_1:+65126553 Msa0036540:CDS
ATGAAACTTACAGCATATCC+AGG 0.544358 1_1:-65124835 None:intergenic
GAGAGGAGTGAAGTAGAAGG+TGG 0.549838 1_1:-65122867 None:intergenic
ATTCCAGGAAATCGAAGAAG+TGG 0.550139 1_1:+65127201 Msa0036540:intron
GCACTATGTGATTCAGGCAG+GGG 0.552477 1_1:+65126376 Msa0036540:CDS
CCTCTCTTTCAACATCTCGC+AGG 0.553170 1_1:+65122884 Msa0036540:five_prime_UTR
CCCTGTACAAAAGATTTGGC+CGG 0.555331 1_1:-65127360 None:intergenic
GTGTTTGGACAAGTCGTCAA+GGG 0.558972 1_1:+65126661 Msa0036540:CDS
TGGACAAGTCGTCAAGGGAG+AGG 0.559232 1_1:+65126666 Msa0036540:CDS
CTCTCAAACAGAAGGTCTGA+AGG 0.559435 1_1:+65127275 Msa0036540:CDS
TAGGATTAGGTTAAATGGCT+AGG 0.565103 1_1:+65123295 Msa0036540:intron
CCTGCGAGATGTTGAAAGAG+AGG 0.567408 1_1:-65122884 None:intergenic
ATTCATGCTTGGAACATCCA+AGG 0.573047 1_1:+65126564 Msa0036540:CDS
ATTCAGGCAGGGGATGGTCA+AGG 0.591509 1_1:+65126386 Msa0036540:CDS
TGAACCTTTAGAAGTTCACC+TGG 0.596242 1_1:+65127387 Msa0036540:three_prime_UTR
TATGTGATTCAGGCAGGGGA+TGG 0.596403 1_1:+65126380 Msa0036540:CDS
CAACAAAGCAAAAGGAAGAA+GGG 0.596730 1_1:+65123339 Msa0036540:CDS
TTCATGCTTGGAACATCCAA+GGG 0.601739 1_1:+65126565 Msa0036540:CDS
GGTGCAGTGAATGGATCGTA+CGG 0.601780 1_1:-65122846 None:intergenic
TATAATAGTAGAACTGTACA+AGG 0.602132 1_1:+65125017 Msa0036540:CDS
AGCACTATGTGATTCAGGCA+GGG 0.602224 1_1:+65126375 Msa0036540:CDS
AAATAACTTGTCAGTCTCTG+AGG 0.605740 1_1:+65124544 Msa0036540:CDS
AAGGGCAAACACACCAACAA+AGG 0.607399 1_1:+65126583 Msa0036540:CDS
TGTGTTTGGACAAGTCGTCA+AGG 0.618995 1_1:+65126660 Msa0036540:CDS
AAGCTGGATCGAAGCAACCC+AGG 0.622309 1_1:-65127405 None:intergenic
TGATGTGACTCTCAAACAGA+AGG 0.625289 1_1:+65127267 Msa0036540:CDS
TAAGAGGAAAGCAACCTGCA+AGG 0.628079 1_1:+65126432 Msa0036540:CDS
CTAGCCGCGCTAATCCGAGA+AGG 0.659399 1_1:-65123363 None:intergenic
TAACTTGTCAGTCTCTGAGG+AGG 0.678198 1_1:+65124547 Msa0036540:CDS
GAACCTTTAGAAGTTCACCT+GGG 0.688093 1_1:+65127388 Msa0036540:three_prime_UTR
GGGACCTTCTCGGATTAGCG+CGG 0.730312 1_1:+65123359 Msa0036540:CDS
GCAGTGAATGGATCGTACGG+CGG 0.736862 1_1:-65122843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAATTTCAATTAAC+TGG - chr1_1:65124931-65124950 None:intergenic 10.0%
!! AGTTAATTGAAATTATTATA+TGG + chr1_1:65124930-65124949 Msa0036540:intron 10.0%
!!! TTATATTGATTGAAAATAAA+TGG - chr1_1:65126857-65126876 None:intergenic 10.0%
!! TAATTAATAGAATCCAAAAA+TGG - chr1_1:65122962-65122981 None:intergenic 15.0%
!! AATTTCAAACTTTATGTTAA+TGG + chr1_1:65123121-65123140 Msa0036540:intron 15.0%
!! ATTTCAAACTTTATGTTAAT+GGG + chr1_1:65123122-65123141 Msa0036540:intron 15.0%
!! TGATCAAAAAAATAAAGATT+TGG + chr1_1:65123153-65123172 Msa0036540:intron 15.0%
!!! AGAGAAAATATTTTTTATGT+TGG + chr1_1:65123999-65124018 Msa0036540:intron 15.0%
!!! TTTTATGTTGGAAAATAAAA+AGG + chr1_1:65124011-65124030 Msa0036540:intron 15.0%
!! TTTATGTTGGAAAATAAAAA+GGG + chr1_1:65124012-65124031 Msa0036540:intron 15.0%
!! AAAAATGCTAAAAAATTCAA+TGG - chr1_1:65124338-65124357 None:intergenic 15.0%
!!! TCTATTTTTCTCATATAAAT+AGG + chr1_1:65124438-65124457 Msa0036540:intron 15.0%
!! AGGAGTAAAAAAAAAAAAAA+AGG - chr1_1:65124597-65124616 None:intergenic 15.0%
!! ATTGAAAATAAATGGAAAAA+TGG - chr1_1:65126849-65126868 None:intergenic 15.0%
!!! TTTTCAATCAATATAAATCA+AGG + chr1_1:65126861-65126880 Msa0036540:intron 15.0%
!! TATCACTTTATATGTAATTA+TGG + chr1_1:65126919-65126938 Msa0036540:intron 15.0%
!! TTTAGTAATGAATACAATAA+CGG + chr1_1:65126956-65126975 Msa0036540:intron 15.0%
!! AAGTTAATTAAGAACGAAAA+AGG - chr1_1:65123008-65123027 None:intergenic 20.0%
!! AATAAAGATTTGGATGATAT+TGG + chr1_1:65123163-65123182 Msa0036540:intron 20.0%
!!! TTTTGATTCAGTAGAATTTT+TGG + chr1_1:65123226-65123245 Msa0036540:intron 20.0%
!!! ATTTTGGTTTATTAACTAAC+TGG + chr1_1:65123262-65123281 Msa0036540:intron 20.0%
!!! TTTTGGTTTATTAACTAACT+GGG + chr1_1:65123263-65123282 Msa0036540:intron 20.0%
!!! TGAAATGCTTGATAATTTTT+GGG + chr1_1:65123621-65123640 Msa0036540:intron 20.0%
!!! TTTTATTTATAAATTGGCCA+TGG - chr1_1:65124153-65124172 None:intergenic 20.0%
!! GCCAATTTATAAATAAAACA+CGG + chr1_1:65124155-65124174 Msa0036540:intron 20.0%
!!! ACCGTGTTTTATTTATAAAT+TGG - chr1_1:65124159-65124178 None:intergenic 20.0%
!!! CTTTAAAATCATATAACTGA+TGG - chr1_1:65124387-65124406 None:intergenic 20.0%
!!! CAGTTATATGATTTTAAAGA+AGG + chr1_1:65124388-65124407 Msa0036540:intron 20.0%
!! ACCTATAATAATGAAGAAAT+AGG - chr1_1:65124976-65124995 None:intergenic 20.0%
!!! TTCCAACAAAGTTTTTAATA+TGG + chr1_1:65125094-65125113 Msa0036540:intron 20.0%
!! TTCCATATTAAAAACTTTGT+TGG - chr1_1:65125099-65125118 None:intergenic 20.0%
!! ATATATTTCAGCTAAGATTA+TGG - chr1_1:65125281-65125300 None:intergenic 20.0%
!!! ATCTTAGCTGAAATATATTT+TGG + chr1_1:65125283-65125302 Msa0036540:intron 20.0%
!!! AGTCCTCTTTTTTTTTTTTT+TGG + chr1_1:65125327-65125346 Msa0036540:intron 20.0%
!! TCACCAAAAAAAAAAAAAAG+AGG - chr1_1:65125333-65125352 None:intergenic 20.0%
!! TTAGTATAAGTAAGAATACT+AGG + chr1_1:65125768-65125787 Msa0036540:intron 20.0%
!! ATTTGTGCTATATATAAGAT+TGG - chr1_1:65125794-65125813 None:intergenic 20.0%
!! AGTGATAAATCAACAAAAAT+TGG - chr1_1:65126906-65126925 None:intergenic 20.0%
!!! AATTTTGACATCTGTATAAA+TGG + chr1_1:65127008-65127027 Msa0036540:intron 20.0%
!! AATCAAGAGTTTCAATATTA+AGG + chr1_1:65127153-65127172 Msa0036540:intron 20.0%
!! AATTATAAAGTAACAGAAAG+AGG - chr1_1:65127504-65127523 None:intergenic 20.0%
!!! CACATCTTCTTTTTTTATTT+TGG + chr1_1:65127597-65127616 Msa0036540:three_prime_UTR 20.0%
!! TAAAGAGAATATTACAAAAC+TGG - chr1_1:65127731-65127750 None:intergenic 20.0%
!! AAGTTGAGATTTTTACAAAG+AGG - chr1_1:65122806-65122825 None:intergenic 25.0%
!! CAAAACCTTTATTCCATTTT+TGG + chr1_1:65122946-65122965 Msa0036540:intron 25.0%
! AGAATCCAAAAATGGAATAA+AGG - chr1_1:65122954-65122973 None:intergenic 25.0%
! TATGATAGGATTAGGTTAAA+TGG + chr1_1:65123290-65123309 Msa0036540:intron 25.0%
!!! TAAATTGAGCTTTATTGCTT+TGG + chr1_1:65123577-65123596 Msa0036540:intron 25.0%
!!! CTGAAATGCTTGATAATTTT+TGG + chr1_1:65123620-65123639 Msa0036540:intron 25.0%
! AGTGATAGAGAGATAATATA+GGG + chr1_1:65123950-65123969 Msa0036540:intron 25.0%
!! ATATTCGATTTTCTGTATTC+TGG + chr1_1:65124044-65124063 Msa0036540:intron 25.0%
!!! TTTGTTTTGCTAAAAAACAG+AGG - chr1_1:65124206-65124225 None:intergenic 25.0%
!!! ATTTTAAAGAAGGCTGTTAT+TGG + chr1_1:65124398-65124417 Msa0036540:intron 25.0%
! AAAGTAAGAAATGAATGGTT+AGG - chr1_1:65124494-65124513 None:intergenic 25.0%
! CAGTTAAAGTAAGAAATGAA+TGG - chr1_1:65124499-65124518 None:intergenic 25.0%
!! TTCTTACTTTAACTGTTTTC+AGG + chr1_1:65124504-65124523 Msa0036540:intron 25.0%
!!! TTGTAGGTTGAAAATAGTTT+TGG + chr1_1:65124790-65124809 Msa0036540:intron 25.0%
!!! TGTAGGTTGAAAATAGTTTT+GGG + chr1_1:65124791-65124810 Msa0036540:intron 25.0%
!! TGGAATTTTATCTTATTACC+TGG + chr1_1:65124950-65124969 Msa0036540:intron 25.0%
!! GCCTATTTCTTCATTATTAT+AGG + chr1_1:65124972-65124991 Msa0036540:intron 25.0%
! TAGGTCTTAAATACATCTAA+AGG + chr1_1:65124991-65125010 Msa0036540:intron 25.0%
! AGGTCTTAAATACATCTAAA+GGG + chr1_1:65124992-65125011 Msa0036540:intron 25.0%
! TATAATAGTAGAACTGTACA+AGG + chr1_1:65125017-65125036 Msa0036540:CDS 25.0%
!!! TTGACGAATTTATTGACTTA+TGG + chr1_1:65125058-65125077 Msa0036540:CDS 25.0%
!!! GTTATTTTGTGATAGACAAT+AGG + chr1_1:65125187-65125206 Msa0036540:intron 25.0%
!! AAGTGCTGTAAATATTACTT+GGG - chr1_1:65125246-65125265 None:intergenic 25.0%
!!! AAAGTGCTGTAAATATTACT+TGG - chr1_1:65125247-65125266 None:intergenic 25.0%
! TATGATGTGAAATGTTGTTA+TGG - chr1_1:65125380-65125399 None:intergenic 25.0%
!! TCATATCTTGTTTCTTTGTT+AGG + chr1_1:65125395-65125414 Msa0036540:intron 25.0%
! CAAATTTCCTTTGTCATATA+AGG + chr1_1:65125667-65125686 Msa0036540:intron 25.0%
!!! CAAATTTGTACTTTTTGATC+TGG + chr1_1:65125944-65125963 Msa0036540:intron 25.0%
! AGTAGTCTGTTCATTATAAA+TGG + chr1_1:65126245-65126264 Msa0036540:intron 25.0%
! GTAGTCTGTTCATTATAAAT+GGG + chr1_1:65126246-65126265 Msa0036540:intron 25.0%
! TAGAAAATTATACAACTCAC+TGG - chr1_1:65126502-65126521 None:intergenic 25.0%
! AATTATGCAAAAAACCTTCA+TGG - chr1_1:65126800-65126819 None:intergenic 25.0%
! ACAGATGTCAAAATTAGTAT+GGG - chr1_1:65127003-65127022 None:intergenic 25.0%
! TACAGATGTCAAAATTAGTA+TGG - chr1_1:65127004-65127023 None:intergenic 25.0%
! TATTTGTGTCTGAGAAATAA+TGG + chr1_1:65127105-65127124 Msa0036540:intron 25.0%
! ATATTACATAACACTATTCC+AGG + chr1_1:65127186-65127205 Msa0036540:intron 25.0%
! TACACTCCTAAAATAACTAT+TGG + chr1_1:65127238-65127257 Msa0036540:CDS 25.0%
! ACACTCCTAAAATAACTATT+GGG + chr1_1:65127239-65127258 Msa0036540:CDS 25.0%
!!! AGTATCCCAATAGTTATTTT+AGG - chr1_1:65127247-65127266 None:intergenic 25.0%
! AAAAAGCAAAAACAACATCA+AGG - chr1_1:65127436-65127455 None:intergenic 25.0%
!!! TCATTTGATTTTTGAGAAGA+AGG + chr1_1:65127539-65127558 Msa0036540:three_prime_UTR 25.0%
!!! CATTTGATTTTTGAGAAGAA+GGG + chr1_1:65127540-65127559 Msa0036540:three_prime_UTR 25.0%
!!! ATTTGATTTTTGAGAAGAAG+GGG + chr1_1:65127541-65127560 Msa0036540:three_prime_UTR 25.0%
AATGAGAAATTTCGTGTAGT+TGG - chr1_1:65122743-65122762 None:intergenic 30.0%
AGTTGTATCCAGTAAGATTA+GGG - chr1_1:65123041-65123060 None:intergenic 30.0%
AGTTAAGATCCAACAAATTG+GGG - chr1_1:65123066-65123085 None:intergenic 30.0%
CAGTTAAGATCCAACAAATT+GGG - chr1_1:65123067-65123086 None:intergenic 30.0%
ACAGTTAAGATCCAACAAAT+TGG - chr1_1:65123068-65123087 None:intergenic 30.0%
! TTTTCGAATCTAGAAACTCA+TGG - chr1_1:65123103-65123122 None:intergenic 30.0%
ACTAACTGGGAATTTATGAT+AGG + chr1_1:65123276-65123295 Msa0036540:intron 30.0%
TGGGAATTTATGATAGGATT+AGG + chr1_1:65123282-65123301 Msa0036540:intron 30.0%
!! TGTCTGAAATCGTATTTTGT+TGG + chr1_1:65123669-65123688 Msa0036540:intron 30.0%
!! AATCGTATTTTGTTGGCTAA+AGG + chr1_1:65123676-65123695 Msa0036540:intron 30.0%
TGAGAGAGATCAATTGATAT+AGG - chr1_1:65123714-65123733 None:intergenic 30.0%
GAGTGATAGAGAGATAATAT+AGG + chr1_1:65123949-65123968 Msa0036540:intron 30.0%
AAGAAATGAATGGTTAGGTA+AGG - chr1_1:65124489-65124508 None:intergenic 30.0%
GATAACATGAAACTACAGAA+GGG - chr1_1:65124623-65124642 None:intergenic 30.0%
AGATAACATGAAACTACAGA+AGG - chr1_1:65124624-65124643 None:intergenic 30.0%
! GATAAAAGGGAGTATACATT+AGG - chr1_1:65124657-65124676 None:intergenic 30.0%
! GTATACTCCCTTTTATCTAA+AGG + chr1_1:65124660-65124679 Msa0036540:intron 30.0%
TAGAAGGCCTTTAGATAAAA+GGG - chr1_1:65124670-65124689 None:intergenic 30.0%
ATAGAAGGCCTTTAGATAAA+AGG - chr1_1:65124671-65124690 None:intergenic 30.0%
TCAAACACACACATAATAGA+AGG - chr1_1:65124686-65124705 None:intergenic 30.0%
!! CTCAGACAATTTACTTTTGT+AGG + chr1_1:65124774-65124793 Msa0036540:intron 30.0%
!! GTAGGTTGAAAATAGTTTTG+GGG + chr1_1:65124792-65124811 Msa0036540:intron 30.0%
GAAAATGAATTATAGCAGTG+TGG - chr1_1:65124864-65124883 None:intergenic 30.0%
TAATAATGAAGAAATAGGCC+AGG - chr1_1:65124971-65124990 None:intergenic 30.0%
TTAATATGGAAGCTGCTTAA+TGG + chr1_1:65125108-65125127 Msa0036540:intron 30.0%
GTAGAAGTTCAATATTTGCT+AGG + chr1_1:65125209-65125228 Msa0036540:intron 30.0%
TCAGCTAAGATTATGGAAAA+AGG - chr1_1:65125274-65125293 None:intergenic 30.0%
GTGAAATGTTGTTATGGATA+TGG - chr1_1:65125374-65125393 None:intergenic 30.0%
! ATCTTGTTTCTTTGTTAGGT+TGG + chr1_1:65125399-65125418 Msa0036540:intron 30.0%
TATCAGATATATGTAGAGCT+TGG + chr1_1:65125486-65125505 Msa0036540:intron 30.0%
! AGTTAATGCAGCAATTTTCA+AGG - chr1_1:65125634-65125653 None:intergenic 30.0%
ATCTCAATCAAGTATAGATG+TGG - chr1_1:65125746-65125765 None:intergenic 30.0%
ACATTTCTGATTTCGCTTAT+AGG - chr1_1:65125839-65125858 None:intergenic 30.0%
!! ATTTGTACTTTTTGATCTGG+AGG + chr1_1:65125947-65125966 Msa0036540:intron 30.0%
! AAGTTGTTATTCGTATCAAG+CGG - chr1_1:65126156-65126175 None:intergenic 30.0%
!! TGTTTGGTAATACAGCTTTT+TGG + chr1_1:65126179-65126198 Msa0036540:intron 30.0%
!! GTTTGGTAATACAGCTTTTT+GGG + chr1_1:65126180-65126199 Msa0036540:intron 30.0%
TATTAAGCACTATGTGATTC+AGG + chr1_1:65126370-65126389 Msa0036540:CDS 30.0%
AAAGAATAAGAAAACCTTGC+AGG - chr1_1:65126449-65126468 None:intergenic 30.0%
! GCAAGGTTTTCTTATTCTTT+TGG + chr1_1:65126449-65126468 Msa0036540:intron 30.0%
GAAAAGATCAAATCCTTTGT+TGG - chr1_1:65126599-65126618 None:intergenic 30.0%
! TTCTCATTTAGATCTGGAAT+CGG - chr1_1:65126634-65126653 None:intergenic 30.0%
ATAAGCTTCTCATTTAGATC+TGG - chr1_1:65126640-65126659 None:intergenic 30.0%
AATGAGAAGCTTATTGTGTT+TGG + chr1_1:65126646-65126665 Msa0036540:CDS 30.0%
AAAGGAGTAACAAAAGGAAA+GGG - chr1_1:65126761-65126780 None:intergenic 30.0%
AAAAGGAGTAACAAAAGGAA+AGG - chr1_1:65126762-65126781 None:intergenic 30.0%
AGGATAAAAGGAGTAACAAA+AGG - chr1_1:65126767-65126786 None:intergenic 30.0%
! TTGCATAATTTTTCATGTGC+TGG + chr1_1:65126810-65126829 Msa0036540:intron 30.0%
CAGATGTCAAAATTAGTATG+GGG - chr1_1:65127002-65127021 None:intergenic 30.0%
ATAACTGACATTCAAACAGT+TGG - chr1_1:65127079-65127098 None:intergenic 30.0%
!! AGTTTGCTTATAACCTGTTT+TGG + chr1_1:65127333-65127352 Msa0036540:three_prime_UTR 30.0%
!! TTTGATTTTTGAGAAGAAGG+GGG + chr1_1:65127542-65127561 Msa0036540:three_prime_UTR 30.0%
TTTGTGTATGCTTGTAAGAT+TGG + chr1_1:65127568-65127587 Msa0036540:three_prime_UTR 30.0%
! TATTACAAAACTGGCCATTT+TGG - chr1_1:65127722-65127741 None:intergenic 30.0%
TCTTTATGCCCTAATCTTAC+TGG + chr1_1:65123030-65123049 Msa0036540:intron 35.0%
CAGTTGTATCCAGTAAGATT+AGG - chr1_1:65123042-65123061 None:intergenic 35.0%
!! TGGTTTGTGACTCTTGATTT+TGG + chr1_1:65123246-65123265 Msa0036540:intron 35.0%
TAGGATTAGGTTAAATGGCT+AGG + chr1_1:65123295-65123314 Msa0036540:intron 35.0%
CTCTGTTACAACAAAGCAAA+AGG + chr1_1:65123331-65123350 Msa0036540:CDS 35.0%
ACAACAAAGCAAAAGGAAGA+AGG + chr1_1:65123338-65123357 Msa0036540:CDS 35.0%
CAACAAAGCAAAAGGAAGAA+GGG + chr1_1:65123339-65123358 Msa0036540:CDS 35.0%
! CTTGGTTGGATTTTTCCTTT+TGG + chr1_1:65123413-65123432 Msa0036540:CDS 35.0%
AATGTCTGTATGTAGCCAAA+AGG - chr1_1:65123431-65123450 None:intergenic 35.0%
!! TTTTGGCTACATACAGACAT+TGG + chr1_1:65123430-65123449 Msa0036540:CDS 35.0%
TTAGTGTGAGAAATGATACG+CGG + chr1_1:65123508-65123527 Msa0036540:intron 35.0%
!!! TTTTGGGATGCTATTGCTAT+AGG + chr1_1:65123637-65123656 Msa0036540:intron 35.0%
ATGCTATTGCTATAGGATAG+AGG + chr1_1:65123644-65123663 Msa0036540:intron 35.0%
!!! GTAAGTACTCCTGTCTTTTT+TGG + chr1_1:65123782-65123801 Msa0036540:intron 35.0%
!!! GTAAGTACTCCTGTCTTTTT+TGG + chr1_1:65123782-65123801 Msa0036540:intron 35.0%
GACAAAAACTTGTCTCATCA+TGG + chr1_1:65124066-65124085 Msa0036540:intron 35.0%
TTAGTGAGGGACAAGAATTT+CGG + chr1_1:65124090-65124109 Msa0036540:intron 35.0%
TAAAAAACAGAGGACTGTAC+TGG - chr1_1:65124196-65124215 None:intergenic 35.0%
! TTTGGTTTATGCTCTAGTTC+TGG + chr1_1:65124254-65124273 Msa0036540:intron 35.0%
! AAATAACTTGTCAGTCTCTG+AGG + chr1_1:65124544-65124563 Msa0036540:CDS 35.0%
ATGAAACTTACAGCATATCC+AGG - chr1_1:65124838-65124857 None:intergenic 35.0%
ATAAATTCGTCAACAGCTTC+AGG - chr1_1:65125051-65125070 None:intergenic 35.0%
ATGTTGTTATGGATATGGAG+AGG - chr1_1:65125369-65125388 None:intergenic 35.0%
! AGCATCGAGCTAATATCTAT+GGG - chr1_1:65125512-65125531 None:intergenic 35.0%
!! AAGCATCGAGCTAATATCTA+TGG - chr1_1:65125513-65125532 None:intergenic 35.0%
TGGTTAACTGGACATGATAT+AGG + chr1_1:65125554-65125573 Msa0036540:intron 35.0%
ATAATCTGCTAGTGTTTGTG+TGG - chr1_1:65125585-65125604 None:intergenic 35.0%
TTCGACACCTTATATGACAA+AGG - chr1_1:65125677-65125696 None:intergenic 35.0%
!! GTCATATAAGGTGTCGAATT+CGG + chr1_1:65125679-65125698 Msa0036540:intron 35.0%
GAGTACTAGGATTATTAGTG+TGG + chr1_1:65125705-65125724 Msa0036540:intron 35.0%
! TTTTGATCTGGAGGTTACTT+TGG + chr1_1:65125956-65125975 Msa0036540:intron 35.0%
CACTAACATAGCAATTCTAC+TGG - chr1_1:65126004-65126023 None:intergenic 35.0%
CGAATAACAACTTCTGTGTT+TGG + chr1_1:65126163-65126182 Msa0036540:intron 35.0%
TAAACTGATGCCAAAAAACG+TGG - chr1_1:65126222-65126241 None:intergenic 35.0%
AGACAAATCATAGGTTAGGT+TGG - chr1_1:65126307-65126326 None:intergenic 35.0%
TTTGACTGCAGACAAATCAT+AGG - chr1_1:65126316-65126335 None:intergenic 35.0%
! TGATTTGTCTGCAGTCAAAA+AGG + chr1_1:65126317-65126336 Msa0036540:intron 35.0%
AGTCAAAAAGGACACTTCAA+AGG + chr1_1:65126329-65126348 Msa0036540:intron 35.0%
GTCAAAAAGGACACTTCAAA+GGG + chr1_1:65126330-65126349 Msa0036540:intron 35.0%
!!! TGGTTTTTTACAGTCAATCC+TGG + chr1_1:65126469-65126488 Msa0036540:intron 35.0%
GAATGCTTCATGTTTCATAC+TGG - chr1_1:65126548-65126567 None:intergenic 35.0%
! AAACATGAAGCATTCATGCT+TGG + chr1_1:65126553-65126572 Msa0036540:CDS 35.0%
GGCTAAAACGAAAGGATAAA+AGG - chr1_1:65126779-65126798 None:intergenic 35.0%
TCATCCCTGTACAAAAGATT+TGG - chr1_1:65127367-65127386 None:intergenic 35.0%
TTAGTTATGAACAGTGATGC+AGG + chr1_1:65127455-65127474 Msa0036540:three_prime_UTR 35.0%
!! TTGATTTTTGAGAAGAAGGG+GGG + chr1_1:65127543-65127562 Msa0036540:three_prime_UTR 35.0%
!!! ATTTTGGCTCACTGCTAAAT+TGG - chr1_1:65127706-65127725 None:intergenic 35.0%
AATTTAGCAGTGAGCCAAAA+TGG + chr1_1:65127705-65127724 Msa0036540:three_prime_UTR 35.0%
GAGAAATTTCGTGTAGTTGG+AGG - chr1_1:65122740-65122759 None:intergenic 40.0%
AAAGAGAGGAGTGAAGTAGA+AGG - chr1_1:65122873-65122892 None:intergenic 40.0%
TACAACTGTCCCCAATTTGT+TGG + chr1_1:65123054-65123073 Msa0036540:intron 40.0%
CTACGCTTTGATTCTTGTCT+TGG + chr1_1:65123395-65123414 Msa0036540:CDS 40.0%
GCTTTGATTCTTGTCTTGGT+TGG + chr1_1:65123399-65123418 Msa0036540:CDS 40.0%
! CATACAGACATTGGTCTAAC+AGG + chr1_1:65123439-65123458 Msa0036540:CDS 40.0%
! TGATCTCTCTCAGTCTTTTG+AGG + chr1_1:65123722-65123741 Msa0036540:intron 40.0%
! TTTGAGGTGGTAGAACCTTT+AGG + chr1_1:65123738-65123757 Msa0036540:intron 40.0%
TTGAGGTGGTAGAACCTTTA+GGG + chr1_1:65123739-65123758 Msa0036540:intron 40.0%
!!! AGTACTCCTGTCTTTTTTGG+TGG + chr1_1:65123785-65123804 Msa0036540:intron 40.0%
GTTCTACCACCAAAAAAGAC+AGG - chr1_1:65123794-65123813 None:intergenic 40.0%
GTGAATCAAACGCTCTCTAA+TGG - chr1_1:65123816-65123835 None:intergenic 40.0%
!!! AGTACTCCTGTCTTTTTTGG+TGG + chr1_1:65123785-65123804 Msa0036540:intron 40.0%
GTTCTACCACCAAAAAAGAC+AGG - chr1_1:65123794-65123813 None:intergenic 40.0%
GTGAATCAAACGCTCTCTAA+TGG - chr1_1:65123816-65123835 None:intergenic 40.0%
TGTCTCATCATGGTTTAGTG+AGG + chr1_1:65124076-65124095 Msa0036540:intron 40.0%
GTCTCATCATGGTTTAGTGA+GGG + chr1_1:65124077-65124096 Msa0036540:intron 40.0%
ATGGAACTAGACAAAACAGG+TGG - chr1_1:65124134-65124153 None:intergenic 40.0%
!! ACCTGTTTTGTCTAGTTCCA+TGG + chr1_1:65124133-65124152 Msa0036540:intron 40.0%
GTGACATCAGAACAAAGCTA+AGG - chr1_1:65124234-65124253 None:intergenic 40.0%
! GCTTTGTTCTGATGTCACTT+TGG + chr1_1:65124236-65124255 Msa0036540:intron 40.0%
!! GGCTGTTATTGGTTTGTAAC+AGG + chr1_1:65124409-65124428 Msa0036540:intron 40.0%
! AAAGGGAGTATACATTAGGC+AGG - chr1_1:65124653-65124672 None:intergenic 40.0%
ATGGAAGCTGCTTAATGGTT+TGG + chr1_1:65125113-65125132 Msa0036540:intron 40.0%
TGGAAGCTGCTTAATGGTTT+GGG + chr1_1:65125114-65125133 Msa0036540:intron 40.0%
! GGTTTGGTTAGACTTGATGT+TGG + chr1_1:65125135-65125154 Msa0036540:intron 40.0%
!! AGTTTCTCTGGAATAGTGCA+TGG + chr1_1:65125534-65125553 Msa0036540:intron 40.0%
TGGAATAGTGCATGGTTAAC+TGG + chr1_1:65125542-65125561 Msa0036540:intron 40.0%
! TCGAATTCGGTTAGAGTACT+AGG + chr1_1:65125692-65125711 Msa0036540:intron 40.0%
CAAGTATAGATGTGGTACAG+CGG - chr1_1:65125738-65125757 None:intergenic 40.0%
TATTCGTATCAAGCGGTTGT+TGG - chr1_1:65126149-65126168 None:intergenic 40.0%
!! TGGTAATACAGCTTTTTGGG+TGG + chr1_1:65126183-65126202 Msa0036540:intron 40.0%
!!! GATGTTTCTGCCACGTTTTT+TGG + chr1_1:65126209-65126228 Msa0036540:intron 40.0%
CTGCAGACAAATCATAGGTT+AGG - chr1_1:65126311-65126330 None:intergenic 40.0%
ATTCATGCTTGGAACATCCA+AGG + chr1_1:65126564-65126583 Msa0036540:CDS 40.0%
TTCATGCTTGGAACATCCAA+GGG + chr1_1:65126565-65126584 Msa0036540:CDS 40.0%
TTGTCATGTCTGCAATTGTC+TGG + chr1_1:65126724-65126743 Msa0036540:intron 40.0%
!! TCCTTTCGTTTTAGCCATGA+AGG + chr1_1:65126783-65126802 Msa0036540:intron 40.0%
ACCTTCATGGCTAAAACGAA+AGG - chr1_1:65126787-65126806 None:intergenic 40.0%
!! TTTCATGTGCTGGCTGTTTA+TGG + chr1_1:65126820-65126839 Msa0036540:intron 40.0%
! TGGAGTTGCTATTCTGTGAT+TGG + chr1_1:65127028-65127047 Msa0036540:intron 40.0%
!! CTGTGATTGGTTGACTTGTT+CGG + chr1_1:65127041-65127060 Msa0036540:intron 40.0%
!! TGTGATTGGTTGACTTGTTC+GGG + chr1_1:65127042-65127061 Msa0036540:intron 40.0%
TGATGTGACTCTCAAACAGA+AGG + chr1_1:65127267-65127286 Msa0036540:CDS 40.0%
!!! TATAACCTGTTTTGGTGCTC+CGG + chr1_1:65127341-65127360 Msa0036540:three_prime_UTR 40.0%
! TGAACCTTTAGAAGTTCACC+TGG + chr1_1:65127387-65127406 Msa0036540:three_prime_UTR 40.0%
! GAACCTTTAGAAGTTCACCT+GGG + chr1_1:65127388-65127407 Msa0036540:three_prime_UTR 40.0%
!! TGATTTTTGAGAAGAAGGGG+GGG + chr1_1:65127544-65127563 Msa0036540:three_prime_UTR 40.0%
TTTCGTGTAGTTGGAGGCTT+TGG - chr1_1:65122734-65122753 None:intergenic 45.0%
AATGGCTAGGATCAAACCTC+AGG + chr1_1:65123308-65123327 Msa0036540:exon 45.0%
! CTTTGTTGTAACAGAGCCTG+AGG - chr1_1:65123327-65123346 None:intergenic 45.0%
AAAGGAAGAAGGGACCTTCT+CGG + chr1_1:65123349-65123368 Msa0036540:CDS 45.0%
!! TCTCTCTCAGTCTTTTGAGG+TGG + chr1_1:65123725-65123744 Msa0036540:intron 45.0%
GTGAATCAAACGCTCCCTAA+AGG - chr1_1:65123756-65123775 None:intergenic 45.0%
CTAGACAAAACAGGTGGCAA+GGG - chr1_1:65124128-65124147 None:intergenic 45.0%
ACTAGACAAAACAGGTGGCA+AGG - chr1_1:65124129-65124148 None:intergenic 45.0%
GCCATGGAACTAGACAAAAC+AGG - chr1_1:65124137-65124156 None:intergenic 45.0%
!!! GCTCTAGTTCTGGCAGATTT+TGG + chr1_1:65124264-65124283 Msa0036540:intron 45.0%
! TAACTTGTCAGTCTCTGAGG+AGG + chr1_1:65124547-65124566 Msa0036540:CDS 45.0%
ATGAAACTACAGAAGGGCTG+AGG - chr1_1:65124617-65124636 None:intergenic 45.0%
! TGAGTTTTCCCATTGAGACG+AGG + chr1_1:65124703-65124722 Msa0036540:intron 45.0%
CAGAAAGTCCTCGTCTCAAT+GGG - chr1_1:65124714-65124733 None:intergenic 45.0%
TCGAAGAAATCTGAGCTACC+TGG + chr1_1:65124817-65124836 Msa0036540:CDS 45.0%
! GCTGCTTAATGGTTTGGGTT+TGG + chr1_1:65125119-65125138 Msa0036540:intron 45.0%
! GCTCGATGCTTTAGTTTCTC+TGG + chr1_1:65125522-65125541 Msa0036540:intron 45.0%
! CCAGAGGGTGTGTTTATTTC+AGG - chr1_1:65126099-65126118 None:intergenic 45.0%
CCTGAAATAAACACACCCTC+TGG + chr1_1:65126096-65126115 Msa0036540:intron 45.0%
AAGCACTATGTGATTCAGGC+AGG + chr1_1:65126374-65126393 Msa0036540:CDS 45.0%
AGCACTATGTGATTCAGGCA+GGG + chr1_1:65126375-65126394 Msa0036540:CDS 45.0%
GCAGCTGATTGGAACTTAAG+AGG + chr1_1:65126416-65126435 Msa0036540:CDS 45.0%
TAAGAGGAAAGCAACCTGCA+AGG + chr1_1:65126432-65126451 Msa0036540:CDS 45.0%
TTTGTTGGTGTGTTTGCCCT+TGG - chr1_1:65126584-65126603 None:intergenic 45.0%
AAGGGCAAACACACCAACAA+AGG + chr1_1:65126583-65126602 Msa0036540:CDS 45.0%
TGTGTTTGGACAAGTCGTCA+AGG + chr1_1:65126660-65126679 Msa0036540:CDS 45.0%
GTGTTTGGACAAGTCGTCAA+GGG + chr1_1:65126661-65126680 Msa0036540:CDS 45.0%
CTCTCAAACAGAAGGTCTGA+AGG + chr1_1:65127275-65127294 Msa0036540:CDS 45.0%
! TCCGGCCAAATCTTTTGTAC+AGG + chr1_1:65127359-65127378 Msa0036540:three_prime_UTR 45.0%
CCCTGTACAAAAGATTTGGC+CGG - chr1_1:65127363-65127382 None:intergenic 45.0%
! CCGGCCAAATCTTTTGTACA+GGG + chr1_1:65127360-65127379 Msa0036540:three_prime_UTR 45.0%
CAACCCAGGTGAACTTCTAA+AGG - chr1_1:65127394-65127413 None:intergenic 45.0%
CAACATCAAGGCTCAAAAGC+TGG - chr1_1:65127424-65127443 None:intergenic 45.0%
GGTGCAGTGAATGGATCGTA+CGG - chr1_1:65122849-65122868 None:intergenic 50.0%
GTAGAAGGTGGTGCAGTGAA+TGG - chr1_1:65122858-65122877 None:intergenic 50.0%
GAGAGGAGTGAAGTAGAAGG+TGG - chr1_1:65122870-65122889 None:intergenic 50.0%
CCTGCGAGATGTTGAAAGAG+AGG - chr1_1:65122887-65122906 None:intergenic 50.0%
CCTCTCTTTCAACATCTCGC+AGG + chr1_1:65122884-65122903 Msa0036540:five_prime_UTR 50.0%
CAAAACAGGTGGCAAGGGAT+CGG - chr1_1:65124123-65124142 None:intergenic 50.0%
GCAGAAAGTCCTCGTCTCAA+TGG - chr1_1:65124715-65124734 None:intergenic 50.0%
TGAGACGAGGACTTTCTGCA+AGG + chr1_1:65124716-65124735 Msa0036540:intron 50.0%
GCACTATGTGATTCAGGCAG+GGG + chr1_1:65126376-65126395 Msa0036540:CDS 50.0%
TATGTGATTCAGGCAGGGGA+TGG + chr1_1:65126380-65126399 Msa0036540:CDS 50.0%
AAGGAACAGGAGCAGCTGAT+TGG + chr1_1:65126405-65126424 Msa0036540:CDS 50.0%
CAACTCACTGGATCATCACC+AGG - chr1_1:65126490-65126509 None:intergenic 50.0%
CAAGGGAGAGGATGTTGTTC+AGG + chr1_1:65126678-65126697 Msa0036540:CDS 50.0%
GCAGTGAATGGATCGTACGG+CGG - chr1_1:65122846-65122865 None:intergenic 55.0%
TCCGCAAGCGCAACTGTTTG+TGG + chr1_1:65126121-65126140 Msa0036540:intron 55.0%
CCCACAAACAGTTGCGCTTG+CGG - chr1_1:65126125-65126144 None:intergenic 55.0%
CCGCAAGCGCAACTGTTTGT+GGG + chr1_1:65126122-65126141 Msa0036540:intron 55.0%
CGCAAGCGCAACTGTTTGTG+GGG + chr1_1:65126123-65126142 Msa0036540:intron 55.0%
ATTCAGGCAGGGGATGGTCA+AGG + chr1_1:65126386-65126405 Msa0036540:CDS 55.0%
TGGACAAGTCGTCAAGGGAG+AGG + chr1_1:65126666-65126685 Msa0036540:CDS 55.0%
! TTTGGCCGGAGCACCAAAAC+AGG - chr1_1:65127349-65127368 None:intergenic 55.0%
AAGCTGGATCGAAGCAACCC+AGG - chr1_1:65127408-65127427 None:intergenic 55.0%
!! GGGACCTTCTCGGATTAGCG+CGG + chr1_1:65123359-65123378 Msa0036540:CDS 60.0%
CTAGCCGCGCTAATCCGAGA+AGG - chr1_1:65123366-65123385 None:intergenic 60.0%
TTGCGCTTGCGGACACCAGA+GGG - chr1_1:65126114-65126133 None:intergenic 60.0%
GCAGGGGATGGTCAAGGAAC+AGG + chr1_1:65126392-65126411 Msa0036540:CDS 60.0%
GTTGCGCTTGCGGACACCAG+AGG - chr1_1:65126115-65126134 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65122720 65127757 65122720 ID=Msa0036540;Name=Msa0036540
chr1_1 mRNA 65122720 65127757 65122720 ID=Msa0036540-mRNA-1;Parent=Msa0036540;Name=Msa0036540-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197|1|1|1|0.85|0.75|8|463|230
chr1_1 exon 65122720 65122905 65122720 ID=Msa0036540-mRNA-1:exon:20968;Parent=Msa0036540-mRNA-1
chr1_1 exon 65123298 65123460 65123298 ID=Msa0036540-mRNA-1:exon:20969;Parent=Msa0036540-mRNA-1
chr1_1 exon 65124526 65124568 65124526 ID=Msa0036540-mRNA-1:exon:20970;Parent=Msa0036540-mRNA-1
chr1_1 exon 65124796 65124846 65124796 ID=Msa0036540-mRNA-1:exon:20971;Parent=Msa0036540-mRNA-1
chr1_1 exon 65124994 65125079 65124994 ID=Msa0036540-mRNA-1:exon:20972;Parent=Msa0036540-mRNA-1
chr1_1 exon 65126331 65126453 65126331 ID=Msa0036540-mRNA-1:exon:20973;Parent=Msa0036540-mRNA-1
chr1_1 exon 65126549 65126699 65126549 ID=Msa0036540-mRNA-1:exon:20974;Parent=Msa0036540-mRNA-1
chr1_1 exon 65127208 65127757 65127208 ID=Msa0036540-mRNA-1:exon:20975;Parent=Msa0036540-mRNA-1
chr1_1 five_prime_UTR 65122720 65122905 65122720 ID=Msa0036540-mRNA-1:five_prime_utr;Parent=Msa0036540-mRNA-1
chr1_1 five_prime_UTR 65123298 65123308 65123298 ID=Msa0036540-mRNA-1:five_prime_utr;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65123309 65123460 65123309 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65124526 65124568 65124526 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65124796 65124846 65124796 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65124994 65125079 65124994 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65126331 65126453 65126331 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65126549 65126699 65126549 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 CDS 65127208 65127294 65127208 ID=Msa0036540-mRNA-1:cds;Parent=Msa0036540-mRNA-1
chr1_1 three_prime_UTR 65127295 65127757 65127295 ID=Msa0036540-mRNA-1:three_prime_utr;Parent=Msa0036540-mRNA-1
Gene Sequence

>Msa0036540

ATGGCTAGGATCAAACCTCAGGCTCTGTTACAACAAAGCAAAAGGAAGAAGGGACCTTCTCGGATTAGCGCGGCTAGTATTATATTCTACGCTTTGATTCTTGTCTTGGTTGGATTTTTCCTTTTGGCTACATACAGACATTGGTCTAACAGGTCAAGATTGCAATCAGAAAATAACTTGTCAGTCTCTGAGGAGGTTGAAAATAGTTTTGGGGACTCGAAGAAATCTGAGCTACCTGGATATGCTGTCTTAAATACATCTAAAGGGTCTATAATAGTAGAACTGTACAAGGAAAGTGCTCCTGAAGCTGTTGACGAATTTATTGACTTATGTCAAAAAGGACACTTCAAAGGGATGCTTTTTCAGCGTGTTATTAAGCACTATGTGATTCAGGCAGGGGATGGTCAAGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACATGAAGCATTCATGCTTGGAACATCCAAGGGCAAACACACCAACAAAGGATTTGATCTTTTCATCACAACTGCACCGATTCCAGATCTAAATGAGAAGCTTATTGTGTTTGGACAAGTCGTCAAGGGAGAGGATGTTGTTCAGGAAATCGAAGAAGTGGATACAGATGAACATTACACTCCTAAAATAACTATTGGGATACTTGATGTGACTCTCAAACAGAAGGTCTGA

Protein sequence

>Msa0036540

MARIKPQALLQQSKRKKGPSRISAASIIFYALILVLVGFFLLATYRHWSNRSRLQSENNLSVSEEVENSFGDSKKSELPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFQRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVVKGEDVVQEIEEVDTDEHYTPKITIGILDVTLKQKV*