AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158390 MtrunA17_Chr7g0253011 96.606 383 12 1 1 382 1 383 0.0 775
Msa1158390 MtrunA17_Chr6g0461661 57.882 406 112 15 2 382 4 375 7.26e-140 403
Msa1158390 MtrunA17_Chr4g0060931 47.342 395 159 14 1 382 1 359 3.38e-99 298
Msa1158390 MtrunA17_Chr3g0091921 64.815 216 67 6 1 215 1 208 2.78e-90 274
Msa1158390 MtrunA17_Chr6g0453451 62.439 205 66 3 12 216 15 208 3.69e-86 264
Msa1158390 MtrunA17_Chr2g0316971 73.077 156 40 1 17 172 23 176 3.55e-81 253
Msa1158390 MtrunA17_Chr6g0484441 67.066 167 47 3 16 182 4 162 1.39e-75 237
Msa1158390 MtrunA17_Chr7g0217721 41.013 395 171 14 3 382 5 352 7.59e-74 233
Msa1158390 MtrunA17_Chr1g0147421 65.116 172 52 4 17 186 27 192 1.67e-72 230
Msa1158390 MtrunA17_Chr3g0139331 53.917 217 77 7 10 214 6 211 7.05e-70 223
Msa1158390 MtrunA17_Chr2g0312321 52.358 212 81 7 17 224 11 206 1.39e-65 211
Msa1158390 MtrunA17_Chr7g0217711 64.189 148 48 3 9 155 11 154 5.89e-62 197
Msa1158390 MtrunA17_Chr3g0144271 67.669 133 40 2 17 148 23 153 1.20e-60 201
Msa1158390 MtrunA17_Chr8g0359921 55.294 170 70 2 15 182 12 177 2.75e-57 190
Msa1158390 MtrunA17_Chr7g0252971 52.874 174 66 4 10 172 2 170 3.33e-57 190
Msa1158390 MtrunA17_Chr8g0372121 53.988 163 64 4 17 176 6 160 4.78e-57 189
Msa1158390 MtrunA17_Chr2g0318081 48.792 207 86 4 15 209 14 212 7.30e-57 189
Msa1158390 MtrunA17_Chr4g0018391 43.172 227 95 7 17 238 7 204 5.41e-56 187
Msa1158390 MtrunA17_Chr4g0017921 60.127 158 51 4 17 171 8 156 1.10e-55 186
Msa1158390 MtrunA17_Chr1g0183741 54.375 160 65 3 12 171 5 156 1.25e-55 184
Msa1158390 MtrunA17_Chr7g0261411 43.123 269 112 9 17 282 10 240 1.39e-55 184
Msa1158390 MtrunA17_Chr5g0405211 54.375 160 62 4 17 173 8 159 3.81e-55 185
Msa1158390 MtrunA17_Chr4g0056541 55.758 165 61 4 17 177 7 163 8.01e-55 184
Msa1158390 MtrunA17_Chr5g0417791 41.365 249 118 6 15 250 1 234 8.23e-55 181
Msa1158390 MtrunA17_Chr2g0309331 53.750 160 64 3 15 171 8 160 2.14e-54 182
Msa1158390 MtrunA17_Chr3g0124761 52.439 164 72 2 15 177 5 163 5.11e-53 177
Msa1158390 MtrunA17_Chr2g0318101 49.714 175 77 4 13 178 11 183 7.49e-53 179
Msa1158390 MtrunA17_Chr5g0398971 37.906 277 134 9 17 289 7 249 8.97e-53 179
Msa1158390 MtrunA17_Chr8g0346001 49.444 180 77 4 17 186 15 190 1.87e-52 180
Msa1158390 MtrunA17_Chr8g0384721 47.716 197 84 4 14 196 4 195 3.23e-52 175
Msa1158390 MtrunA17_Chr4g0042561 52.532 158 69 2 16 171 8 161 4.55e-52 174
Msa1158390 MtrunA17_Chr1g0200561 50.303 165 71 4 17 178 19 175 4.72e-52 177
Msa1158390 MtrunA17_Chr7g0263931 51.497 167 77 3 7 171 1 165 6.11e-52 176
Msa1158390 MtrunA17_Chr2g0309891 51.534 163 72 3 15 175 4 161 9.01e-52 176
Msa1158390 MtrunA17_Chr6g0481091 47.222 180 84 4 15 189 4 177 2.37e-51 171
Msa1158390 MtrunA17_Chr3g0109821 51.786 168 73 4 15 180 4 165 8.02e-51 180
Msa1158390 MtrunA17_Chr5g0433781 51.534 163 71 4 15 175 4 160 1.12e-50 179
Msa1158390 MtrunA17_Chr4g0047841 47.826 184 73 4 17 179 15 196 1.96e-50 172
Msa1158390 MtrunA17_Chr2g0326361 49.704 169 81 3 10 176 7 173 5.51e-50 171
Msa1158390 MtrunA17_Chr3g0130731 50.000 164 76 2 15 177 5 163 2.01e-49 168
Msa1158390 MtrunA17_Chr8g0361731 41.284 218 100 5 1 211 1 197 5.66e-49 170
Msa1158390 MtrunA17_Chr6g0453131 48.256 172 77 3 16 179 14 181 7.39e-49 169
Msa1158390 MtrunA17_Chr5g0417001 46.154 182 86 3 8 181 5 182 2.34e-48 168
Msa1158390 MtrunA17_Chr3g0130101 50.641 156 67 4 19 171 9 157 8.12e-47 163
Msa1158390 MtrunA17_Chr3g0113001 57.333 150 57 5 66 213 14 158 1.17e-46 161
Msa1158390 MtrunA17_Chr7g0214071 50.955 157 68 4 15 171 13 160 3.53e-46 159
Msa1158390 MtrunA17_Chr5g0400461 49.677 155 65 3 17 158 6 160 2.35e-45 159
Msa1158390 MtrunA17_Chr2g0311651 44.920 187 90 4 1 177 9 192 8.44e-45 157
Msa1158390 MtrunA17_Chr5g0442771 46.328 177 85 4 8 177 11 184 1.24e-44 156
Msa1158390 MtrunA17_Chr1g0197351 49.383 162 72 3 17 172 42 199 7.07e-44 158
Msa1158390 MtrunA17_Chr2g0311661 46.243 173 82 4 16 177 19 191 8.44e-44 153
Msa1158390 MtrunA17_Chr3g0128151 50.920 163 62 4 17 172 22 173 1.86e-43 159
Msa1158390 MtrunA17_Chr4g0054791 45.238 168 87 3 17 182 6 170 2.15e-43 153
Msa1158390 MtrunA17_Chr1g0201021 47.771 157 72 4 19 172 21 170 9.26e-43 157
Msa1158390 MtrunA17_Chr5g0428991 49.383 162 64 4 17 171 25 175 1.23e-42 157
Msa1158390 MtrunA17_Chr8g0364791 47.799 159 71 4 17 171 6 156 4.56e-42 152
Msa1158390 MtrunA17_Chr4g0076731 47.059 153 74 3 19 171 56 201 1.25e-41 151
Msa1158390 MtrunA17_Chr8g0384201 45.912 159 74 4 17 171 6 156 3.62e-40 148
Msa1158390 MtrunA17_Chr3g0128111 49.045 157 68 4 20 172 45 193 7.10e-40 142
Msa1158390 MtrunA17_Chr1g0197361 48.125 160 67 6 19 172 10 159 3.29e-39 147
Msa1158390 MtrunA17_Chr3g0092671 48.428 159 68 5 19 172 7 156 9.27e-39 145
Msa1158390 MtrunA17_Chr4g0038751 43.671 158 81 3 19 176 17 166 5.53e-38 138
Msa1158390 MtrunA17_Chr3g0131911 41.573 178 94 4 17 190 14 185 1.90e-37 135
Msa1158390 MtrunA17_Chr8g0385991 42.581 155 82 3 17 168 14 164 1.84e-36 132
Msa1158390 MtrunA17_Chr8g0345671 50.000 132 60 4 16 144 10 138 1.67e-35 134
Msa1158390 MtrunA17_Chr3g0113031 56.204 137 52 6 80 213 3 134 1.96e-35 130
Msa1158390 MtrunA17_Chr8g0345691 47.407 135 64 5 14 144 8 139 6.40e-32 124
Msa1158390 MtrunA17_Chr8g0345711 45.038 131 66 4 17 144 12 139 3.03e-30 114
Msa1158390 MtrunA17_Chr2g0321741 41.060 151 72 5 29 176 2 138 5.25e-30 118
Msa1158390 MtrunA17_Chr2g0321631 36.025 161 93 4 16 169 3 160 4.17e-28 110
Msa1158390 MtrunA17_Chr4g0026141 41.045 134 71 3 17 145 5 135 7.76e-28 110
Msa1158390 MtrunA17_Chr8g0345731 42.857 133 69 5 17 144 24 154 1.48e-25 101
Msa1158390 MtrunA17_Chr8g0345701 38.122 181 78 8 17 180 7 170 2.87e-25 100
Msa1158390 MtrunA17_Chr4g0050701 32.716 162 95 3 17 174 11 162 7.27e-25 100
Msa1158390 MtrunA17_Chr7g0266701 34.337 166 97 5 16 172 3 165 2.11e-24 100
Msa1158390 MtrunA17_Chr8g0345741 40.678 118 64 4 30 144 4 118 4.54e-23 94.4
Msa1158390 MtrunA17_Chr8g0345721 34.395 157 68 4 20 144 38 191 1.40e-22 94.7
Msa1158390 MtrunA17_Chr8g0384351 35.185 162 79 5 10 171 3 138 2.01e-21 90.9
Msa1158390 MtrunA17_Chr7g0243371 53.247 77 34 1 70 146 17 91 3.33e-21 88.2
Msa1158390 MtrunA17_Chr7g0251661 35.606 132 77 5 15 144 8 133 1.40e-20 87.8
Msa1158390 MtrunA17_Chr3g0130321 31.193 218 127 8 14 221 4 208 3.28e-17 79.7
Msa1158390 MtrunA17_Chr7g0251671 31.387 137 86 4 16 150 9 139 5.08e-17 77.8
Msa1158390 MtrunA17_Chr3g0113011 55.357 56 25 0 8 63 10 65 2.82e-16 73.2
Msa1158390 MtrunA17_Chr7g0251651 33.333 138 84 5 15 150 16 147 7.92e-15 72.4
Msa1158390 MtrunA17_Chr3g0113041 52.727 55 26 0 9 63 11 65 2.99e-14 67.4
Msa1158390 MtrunA17_Chr2g0282871 32.222 180 91 9 10 171 46 212 4.34e-14 72.4
Msa1158390 MtrunA17_Chr4g0040541 28.996 269 124 13 9 245 34 267 5.39e-14 71.6
Msa1158390 MtrunA17_Chr2g0324961 32.995 197 95 9 17 194 49 227 9.23e-13 68.2
Msa1158390 MtrunA17_Chr8g0389661 30.851 188 94 8 8 171 38 213 2.45e-12 68.2
Msa1158390 MtrunA17_Chr8g0367761 34.014 147 74 6 17 146 68 208 4.80e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158390 AT5G18270.1 70.698 215 54 4 1 209 5 216 1.61e-107 319
Msa1158390 AT5G18270.2 70.698 215 54 4 1 209 5 216 3.06e-107 318
Msa1158390 AT5G61430.1 47.849 372 149 8 11 382 10 336 5.15e-103 308
Msa1158390 AT3G04060.1 48.196 388 135 12 2 381 4 333 4.57e-102 305
Msa1158390 AT5G07680.1 46.597 382 151 11 1 382 1 329 1.58e-98 296
Msa1158390 AT5G07680.2 47.011 368 142 11 15 382 1 315 1.65e-96 290
Msa1158390 AT5G39610.1 64.623 212 64 5 5 216 8 208 1.17e-86 264
Msa1158390 AT3G29035.1 66.341 205 47 4 5 208 11 194 1.81e-86 265
Msa1158390 AT5G53950.1 68.485 165 50 1 17 181 17 179 2.56e-78 246
Msa1158390 AT3G18400.1 70.370 162 41 3 16 177 4 158 3.72e-76 238
Msa1158390 AT3G15170.1 65.269 167 55 2 11 177 15 178 1.32e-74 234
Msa1158390 AT5G61430.2 45.110 317 129 8 66 382 2 273 2.33e-74 232
Msa1158390 AT1G56010.2 50.673 223 80 7 17 224 19 226 4.75e-69 220
Msa1158390 AT1G76420.1 63.125 160 54 2 17 176 22 176 1.16e-68 220
Msa1158390 AT3G12977.1 50.226 221 85 6 8 223 7 207 1.33e-68 218
Msa1158390 AT2G24430.2 62.733 161 55 2 17 177 16 171 9.85e-68 217
Msa1158390 AT2G24430.1 62.733 161 55 2 17 177 16 171 9.85e-68 217
Msa1158390 AT4G27410.2 47.573 206 89 4 15 209 12 209 1.99e-56 187
Msa1158390 AT4G10350.1 54.237 177 70 4 17 190 9 177 4.71e-56 187
Msa1158390 AT4G36160.1 54.601 163 63 4 12 171 5 159 6.16e-56 188
Msa1158390 AT4G36160.3 54.601 163 63 4 12 171 5 159 6.16e-56 188
Msa1158390 AT4G36160.2 54.601 163 63 4 12 171 9 163 8.25e-56 188
Msa1158390 AT3G04070.2 51.190 168 76 2 11 172 4 171 1.38e-55 186
Msa1158390 AT1G33280.1 58.228 158 54 4 17 171 8 156 1.27e-54 182
Msa1158390 AT2G18060.3 52.469 162 66 4 13 171 5 158 4.45e-54 183
Msa1158390 AT2G18060.1 52.469 162 66 4 13 171 5 158 4.45e-54 183
Msa1158390 AT1G62700.1 42.672 232 100 8 17 245 7 208 1.11e-53 182
Msa1158390 AT1G62700.2 42.672 232 100 8 17 245 7 208 1.11e-53 182
Msa1158390 AT1G12260.2 53.797 158 62 3 17 171 7 156 1.53e-53 181
Msa1158390 AT1G12260.1 53.797 158 62 3 17 171 7 156 2.28e-53 182
Msa1158390 AT5G66300.1 42.857 210 106 5 11 215 6 206 5.09e-53 178
Msa1158390 AT3G04070.1 47.283 184 75 3 11 172 4 187 1.15e-52 179
Msa1158390 AT3G15500.1 53.374 163 70 2 15 177 12 168 1.26e-52 177
Msa1158390 AT5G62380.2 55.696 158 59 4 17 171 7 156 1.71e-52 178
Msa1158390 AT5G62380.1 55.696 158 59 4 17 171 7 156 1.71e-52 178
Msa1158390 AT1G61110.1 48.913 184 72 5 17 186 16 191 3.07e-52 177
Msa1158390 AT1G71930.2 49.091 165 73 3 17 178 9 165 3.36e-52 177
Msa1158390 AT1G71930.1 49.091 165 73 3 17 178 9 165 3.36e-52 177
Msa1158390 AT4G27410.3 43.946 223 89 5 15 209 12 226 4.87e-52 176
Msa1158390 AT3G17730.1 51.875 160 69 3 15 172 4 157 6.89e-52 173
Msa1158390 AT1G52890.1 51.176 170 77 2 15 184 12 175 7.81e-52 176
Msa1158390 AT1G01720.1 51.553 161 71 2 13 171 3 158 1.37e-51 174
Msa1158390 AT4G28530.1 51.149 174 61 4 17 174 10 175 1.42e-51 176
Msa1158390 AT3G61910.1 48.889 180 73 5 17 182 11 185 3.48e-51 174
Msa1158390 AT5G08790.1 51.205 166 73 3 15 177 5 165 6.93e-51 172
Msa1158390 AT1G77450.1 50.610 164 75 2 15 177 8 166 8.45e-51 171
Msa1158390 AT2G46770.1 49.112 169 68 4 17 171 16 180 1.52e-50 174
Msa1158390 AT1G69490.1 44.186 215 105 5 17 227 9 212 1.71e-50 171
Msa1158390 AT3G03200.1 50.888 169 72 4 15 179 4 165 8.53e-50 174
Msa1158390 AT1G79580.3 51.875 160 66 4 15 171 15 166 1.38e-49 171
Msa1158390 AT1G79580.5 51.875 160 66 4 15 171 15 166 1.38e-49 171
Msa1158390 AT1G79580.4 51.875 160 66 4 15 171 15 166 1.38e-49 171
Msa1158390 AT1G79580.2 51.875 160 66 4 15 171 15 166 1.38e-49 171
Msa1158390 AT1G79580.1 51.875 160 66 4 15 171 15 166 1.38e-49 171
Msa1158390 AT5G63790.2 49.398 166 76 2 15 177 58 218 1.59e-49 170
Msa1158390 AT5G63790.1 49.398 166 76 2 15 177 48 208 1.60e-49 169
Msa1158390 AT1G56010.1 50.867 173 56 6 66 224 2 159 1.99e-49 167
Msa1158390 AT1G54330.1 50.909 165 70 3 15 177 4 159 2.70e-49 168
Msa1158390 AT1G32770.1 48.795 166 70 3 17 171 16 177 5.83e-49 169
Msa1158390 AT5G17260.1 49.701 167 77 3 15 179 4 165 1.61e-48 171
Msa1158390 AT1G65910.1 49.091 165 76 3 15 177 4 162 2.57e-48 173
Msa1158390 AT1G33060.1 48.276 174 82 3 17 188 24 191 4.84e-48 172
Msa1158390 AT1G33060.2 48.276 174 82 3 17 188 24 191 5.43e-48 172
Msa1158390 AT3G10490.1 53.165 158 67 3 17 172 27 179 5.87e-48 163
Msa1158390 AT3G10500.1 50.303 165 74 3 10 172 2 160 6.95e-48 171
Msa1158390 AT3G10480.1 55.063 158 64 4 17 172 27 179 8.14e-48 168
Msa1158390 AT5G04410.1 50.602 166 72 4 10 172 2 160 9.38e-48 171
Msa1158390 AT2G43000.1 47.531 162 80 2 19 180 20 176 1.43e-47 163
Msa1158390 AT5G46590.1 50.000 158 73 3 17 172 6 159 3.41e-47 162
Msa1158390 AT5G39820.1 44.560 193 83 4 2 175 8 195 5.17e-47 164
Msa1158390 AT4G35580.1 51.875 160 69 3 17 174 9 162 5.17e-47 167
Msa1158390 AT3G12977.2 50.909 165 58 5 62 223 10 154 6.00e-47 160
Msa1158390 AT4G35580.3 51.875 160 69 3 17 174 9 162 6.55e-47 168
Msa1158390 AT4G35580.2 51.875 160 69 3 17 174 9 162 6.72e-47 168
Msa1158390 AT1G26870.1 33.731 335 152 11 8 334 6 278 7.30e-47 165
Msa1158390 AT5G46590.2 43.158 190 99 4 17 201 6 191 7.72e-47 161
Msa1158390 AT3G10480.2 55.063 158 63 4 17 172 27 178 1.96e-46 165
Msa1158390 AT3G10490.2 53.165 158 67 3 17 172 27 179 2.01e-46 165
Msa1158390 AT5G13180.1 51.266 158 69 4 14 171 11 160 5.05e-46 158
Msa1158390 AT3G15510.1 48.193 166 65 4 21 172 21 179 1.54e-45 160
Msa1158390 AT2G33480.2 50.000 168 66 5 6 171 7 158 2.85e-45 157
Msa1158390 AT2G33480.1 50.000 166 71 4 6 171 7 160 3.68e-45 157
Msa1158390 AT4G17980.1 53.788 132 57 2 17 146 6 135 1.72e-44 155
Msa1158390 AT4G17980.2 53.788 132 57 2 17 146 6 135 2.01e-44 155
Msa1158390 AT1G52880.1 50.000 158 73 2 21 172 21 178 2.87e-44 156
Msa1158390 AT5G64060.1 45.000 160 78 4 16 172 5 157 2.99e-43 154
Msa1158390 AT2G02450.1 45.181 166 84 2 19 184 53 211 7.21e-43 154
Msa1158390 AT2G02450.2 45.181 166 84 2 19 184 53 211 1.05e-42 154
Msa1158390 AT3G49530.2 44.068 177 85 3 17 182 13 186 2.35e-42 153
Msa1158390 AT3G10480.3 45.550 191 64 4 17 172 27 212 3.08e-42 155
Msa1158390 AT2G27300.1 45.963 161 72 5 17 176 14 160 7.76e-42 150
Msa1158390 AT3G49530.1 45.810 179 79 5 17 182 13 186 1.20e-41 152
Msa1158390 AT5G09330.5 45.570 158 78 3 17 172 6 157 1.34e-41 152
Msa1158390 AT5G09330.2 45.570 158 78 3 17 172 6 157 1.34e-41 152
Msa1158390 AT5G09330.4 45.570 158 78 3 17 172 6 157 1.34e-41 152
Msa1158390 AT5G09330.3 45.570 158 78 3 17 172 6 157 1.34e-41 152
Msa1158390 AT5G09330.1 45.570 158 78 3 17 172 6 157 1.34e-41 152
Msa1158390 AT1G34180.3 50.382 131 59 2 19 147 18 144 1.31e-40 149
Msa1158390 AT5G24590.2 47.531 162 68 4 17 171 13 164 1.36e-40 149
Msa1158390 AT2G17040.1 44.304 158 80 3 19 176 8 157 1.55e-40 145
Msa1158390 AT1G32510.1 44.767 172 88 4 17 182 6 176 2.07e-40 144
Msa1158390 AT1G34190.1 48.855 131 61 2 19 147 18 144 4.05e-40 150
Msa1158390 AT1G34180.1 50.382 131 59 2 19 147 18 144 5.58e-40 149
Msa1158390 AT3G12910.1 42.541 181 90 5 9 177 13 191 3.30e-39 142
Msa1158390 AT1G34180.4 46.154 143 59 2 19 147 18 156 8.05e-39 144
Msa1158390 AT1G34180.2 46.154 143 59 2 19 147 18 156 3.26e-38 144
Msa1158390 AT1G32870.2 48.101 158 74 3 17 172 10 161 6.69e-38 143
Msa1158390 AT1G32870.1 48.101 158 74 3 17 172 10 161 7.11e-38 143
Msa1158390 AT1G32870.3 48.101 158 74 3 17 172 46 197 1.34e-37 143
Msa1158390 AT5G22290.1 46.565 131 65 2 19 148 23 149 7.31e-37 137
Msa1158390 AT3G44290.2 46.565 131 65 2 19 148 16 142 8.52e-36 130
Msa1158390 AT3G44290.1 46.565 131 65 2 19 148 16 142 2.74e-35 132
Msa1158390 AT4G10350.2 53.030 132 51 4 62 190 7 130 6.74e-35 130
Msa1158390 AT5G04395.1 45.455 143 64 2 17 146 28 169 2.60e-34 125
Msa1158390 AT4G28530.2 45.802 131 51 3 17 130 10 137 2.03e-30 119
Msa1158390 AT4G01550.1 38.889 162 88 5 20 178 7 160 2.67e-26 110
Msa1158390 AT2G33480.3 51.961 102 43 2 70 171 8 103 1.25e-25 103
Msa1158390 AT5G64530.1 32.020 203 107 6 15 202 1 187 3.46e-23 95.9
Msa1158390 AT4G01520.1 38.125 160 85 7 18 172 5 155 3.85e-23 98.6
Msa1158390 AT5G64530.2 38.636 132 67 3 15 146 1 118 5.52e-23 94.7
Msa1158390 AT4G01540.4 39.490 157 81 7 20 171 7 154 5.61e-23 99.8
Msa1158390 AT1G02250.1 39.310 145 75 5 18 158 4 139 6.01e-23 99.4
Msa1158390 AT1G02230.1 42.069 145 71 6 18 158 4 139 6.15e-23 99.0
Msa1158390 AT4G01540.3 39.490 157 81 7 20 171 7 154 7.39e-23 99.8
Msa1158390 AT3G44350.2 32.099 162 101 4 16 172 4 161 9.39e-23 96.3
Msa1158390 AT4G01540.2 39.490 157 81 7 20 171 7 154 1.00e-22 99.4
Msa1158390 AT4G01540.1 39.490 157 81 7 20 171 7 154 1.10e-22 99.8
Msa1158390 AT3G04420.2 40.458 131 70 3 18 144 4 130 2.67e-22 96.3
Msa1158390 AT3G04420.1 40.458 131 70 3 18 144 4 130 1.21e-21 95.1
Msa1158390 AT3G10490.4 57.831 83 30 2 90 172 2 79 1.38e-21 95.1
Msa1158390 AT3G10490.3 57.831 83 30 2 90 172 2 79 1.38e-21 95.1
Msa1158390 AT2G43000.2 44.118 102 52 2 79 180 2 98 3.12e-21 90.9
Msa1158390 AT5G22380.1 34.615 156 93 4 20 169 8 160 3.75e-21 91.7
Msa1158390 AT3G44350.1 32.877 146 90 3 16 156 4 146 5.87e-21 89.0
Msa1158390 AT2G18060.2 55.844 77 26 3 95 171 2 70 1.43e-20 90.9
Msa1158390 AT5G50820.1 33.929 168 91 6 13 172 13 168 3.78e-20 87.8
Msa1158390 AT5G14000.1 34.783 184 103 6 1 182 3 171 1.12e-19 87.0
Msa1158390 AT5G14000.2 36.478 159 88 5 1 157 3 150 1.79e-19 85.1
Msa1158390 AT1G01010.1 31.707 164 95 5 20 175 6 160 6.95e-19 88.2
Msa1158390 AT1G02220.1 37.313 134 73 4 15 144 1 127 1.79e-17 83.6
Msa1158390 AT5G22290.2 52.830 53 21 1 96 148 2 50 3.52e-13 69.3
Msa1158390 AT3G56530.1 31.343 134 85 4 17 147 52 181 5.19e-13 69.7
Msa1158390 AT4G29230.2 31.401 207 104 10 9 190 39 232 1.37e-12 69.3
Msa1158390 AT4G29230.1 31.841 201 99 10 15 190 46 233 1.68e-12 68.9
Msa1158390 AT5G56620.3 27.609 297 142 14 15 251 41 324 1.86e-12 68.6
Msa1158390 AT5G56620.2 27.609 297 142 14 15 251 41 324 2.01e-12 68.6
Msa1158390 AT4G29230.3 31.841 201 99 10 15 190 46 233 2.41e-12 68.6
Msa1158390 AT4G28500.1 32.571 175 86 8 17 172 59 220 3.40e-12 67.0
Msa1158390 AT5G56620.1 27.609 297 142 14 15 251 41 324 3.79e-12 67.8
Msa1158390 AT3G04430.1 33.108 148 78 6 23 158 6 144 1.67e-11 63.5

Find 86 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGCACTCATTATTCT+TGG 0.177935 7_4:-47751730 None:intergenic
TCCATGCCAACAAGTGTTTA+TGG 0.183230 7_4:+47751702 Msa1158390:CDS
AGTAGTTCAAGTTTGGATTT+TGG 0.186129 7_4:-47751653 None:intergenic
CAAAAGGAGAAAAGACTAAT+TGG 0.210520 7_4:+47750824 Msa1158390:CDS
TTTATATTATAAACATTATT+AGG 0.222080 7_4:+47752074 Msa1158390:three_prime_UTR
CAAACAAAACATATATAATT+TGG 0.253352 7_4:-47752016 None:intergenic
ACTACTTTATGTATCAAAAT+AGG 0.259873 7_4:+47751670 Msa1158390:CDS
TCTTCATACCAACAAGGTTC+TGG 0.292340 7_4:-47750771 None:intergenic
TACATAAAGTAGTTCAAGTT+TGG 0.294780 7_4:-47751660 None:intergenic
GATGATCATAGTTGATTCTA+TGG 0.301071 7_4:-47751530 None:intergenic
ATTCTATGGTAATTATCTTC+TGG 0.313346 7_4:-47751516 None:intergenic
AGTTGCACCTCTCTCAGATT+TGG 0.314330 7_4:+47751875 Msa1158390:CDS
AACTAGACATGGAAAGGAAT+AGG 0.341443 7_4:+47751820 Msa1158390:CDS
GAGCAACTGAATCTGGTTAC+TGG 0.349949 7_4:+47750701 Msa1158390:CDS
AAGACTCTTGTGTTCTATAA+AGG 0.353552 7_4:+47750793 Msa1158390:CDS
TAAACATTATTAGGCATCAT+AGG 0.360664 7_4:+47752083 Msa1158390:three_prime_UTR
TCACCTTTGTTAACAACAAT+TGG 0.361305 7_4:-47750282 None:intergenic
TTGATGTTGATTATTGTTGA+TGG 0.362599 7_4:-47751481 None:intergenic
AGGCATCATAGGAAAGTTCT+TGG 0.364360 7_4:+47752094 Msa1158390:three_prime_UTR
TCCAATTGGGTTGTTGAGAT+TGG 0.374808 7_4:-47751601 None:intergenic
ACAAATAGAGCAACTGAATC+TGG 0.384360 7_4:+47750694 Msa1158390:CDS
AAATTCAGTGCAACTGCTAT+TGG 0.394008 7_4:+47750399 Msa1158390:CDS
CTATTTGTTCTCATACCTGT+TGG 0.394100 7_4:-47750679 None:intergenic
TGAGACCTGTATCTTGTGAT+TGG 0.394390 7_4:-47751770 None:intergenic
TTGTTATTGTGTAGGATGAA+TGG 0.403338 7_4:+47751235 Msa1158390:intron
TCCAATCTCAACAACCCAAT+TGG 0.413953 7_4:+47751600 Msa1158390:CDS
CAAACTCTTGATCTTCCTCC+AGG 0.417105 7_4:+47750309 Msa1158390:CDS
GAGATTGGATTGGTTGGAAA+TGG 0.417233 7_4:-47751586 None:intergenic
GTGAGAATGTGTTTCCAATT+GGG 0.419913 7_4:-47751614 None:intergenic
TGTTATTGTGTAGGATGAAT+GGG 0.421686 7_4:+47751236 Msa1158390:intron
GCTGAGCCATAAACACTTGT+TGG 0.422716 7_4:-47751708 None:intergenic
TTACACAAATGATGAATTCA+AGG 0.424939 7_4:+47751392 Msa1158390:CDS
AATTCATCATTTGTGTAAGA+AGG 0.426182 7_4:-47751387 None:intergenic
TTCTTCACTTCCACCTCTCA+TGG 0.435878 7_4:+47751362 Msa1158390:CDS
ACTAGACATGGAAAGGAATA+GGG 0.439010 7_4:+47751821 Msa1158390:CDS
AAAAGACCAGAAGAAATTTG+AGG 0.442270 7_4:-47751300 None:intergenic
TGTGAGAATGTGTTTCCAAT+TGG 0.442824 7_4:-47751615 None:intergenic
AAAAGGAGAAAAGACTAATT+GGG 0.445684 7_4:+47750825 Msa1158390:CDS
TGTTGATGGAATTTGTTGAT+TGG 0.472332 7_4:-47751421 None:intergenic
AAAAGAAGAGAGTGATGAAG+AGG 0.472826 7_4:-47750193 None:intergenic
AAATGCAGAGAAAGCAAAGA+TGG 0.474276 7_4:+47750612 Msa1158390:intron
AAGATATAGTTTGCGATCCA+TGG 0.474574 7_4:+47751945 Msa1158390:three_prime_UTR
TGTTTGTTATCTCACTGAAA+AGG 0.477354 7_4:+47750365 Msa1158390:CDS
AAAGATAGAAAATATCCAAC+AGG 0.478419 7_4:+47750664 Msa1158390:CDS
TTTGAACAAGTGTGAACCTT+GGG 0.484109 7_4:+47750431 Msa1158390:CDS
ACAAAGAGATTTATCACAAA+GGG 0.487290 7_4:+47750740 Msa1158390:CDS
GGTTATGCATGAATTCAGAT+TGG 0.489927 7_4:+47750846 Msa1158390:CDS
TCAAACCAATCACAAGATAC+AGG 0.493243 7_4:+47751765 Msa1158390:CDS
TCTGGTTACTGGAAAGCTAC+AGG 0.498363 7_4:+47750712 Msa1158390:CDS
CAAAGATGGGAGAGAAAGAA+TGG 0.500063 7_4:+47750626 Msa1158390:CDS
AAAGGAATCCAGAACCTTGT+TGG 0.500661 7_4:+47750763 Msa1158390:CDS
TAATTAACACTGAAAAGTCT+TGG 0.502552 7_4:-47752150 None:intergenic
GGATGAATGGGTTGTGTCAA+GGG 0.511195 7_4:+47751248 Msa1158390:intron
TAATCTCCCTAACAAAGAAA+AGG 0.513609 7_4:+47750888 Msa1158390:CDS
GAGAGAGGTGCAACTGATGA+AGG 0.515723 7_4:-47751867 None:intergenic
GTTGTTGAGATTGGATTGGT+TGG 0.517467 7_4:-47751592 None:intergenic
TTATCTCAGCATCTGTTGGA+TGG 0.533789 7_4:-47750341 None:intergenic
ACAATTATCTCAGCATCTGT+TGG 0.534890 7_4:-47750345 None:intergenic
ATGCATGAATTCAGATTGGA+AGG 0.538884 7_4:+47750850 Msa1158390:CDS
TTGGGTTGTTGAGATTGGAT+TGG 0.542311 7_4:-47751596 None:intergenic
GAACCAATTGTTGTTAACAA+AGG 0.542600 7_4:+47750279 Msa1158390:CDS
TATCAAAACTAGACATGGAA+AGG 0.546823 7_4:+47751814 Msa1158390:CDS
GAGATTTATCACAAAGGGAA+AGG 0.551896 7_4:+47750745 Msa1158390:CDS
TACACAAATGATGAATTCAA+GGG 0.563342 7_4:+47751393 Msa1158390:CDS
GCCATAAACACTTGTTGGCA+TGG 0.563946 7_4:-47751703 None:intergenic
AACTTACTTGGTAAATCCCA+AGG 0.565147 7_4:-47750447 None:intergenic
GCATTGTATGATGATCTTGA+AGG 0.568104 7_4:+47751843 Msa1158390:CDS
AGGATGAATGGGTTGTGTCA+AGG 0.568459 7_4:+47751247 Msa1158390:intron
AATGGAAGCATAGTTCATCA+TGG 0.576257 7_4:-47751568 None:intergenic
TATAAAGGAAGAGCTCCAAA+AGG 0.577032 7_4:+47750808 Msa1158390:CDS
GTTGGATGGAATCTGAAACC+TGG 0.577786 7_4:-47750327 None:intergenic
AGCTGTATCAAAACTAGACA+TGG 0.580538 7_4:+47751809 Msa1158390:CDS
GAAGCATAGTTCATCATGGA+AGG 0.586625 7_4:-47751564 None:intergenic
AGCCAAGAATAATGAGTGCA+AGG 0.592346 7_4:+47751728 Msa1158390:CDS
GACAAAGAGATTTATCACAA+AGG 0.593116 7_4:+47750739 Msa1158390:CDS
TCAACAAAATCACAATCAGA+TGG 0.597800 7_4:+47751438 Msa1158390:CDS
AATGCAGAGAAAGCAAAGAT+GGG 0.604056 7_4:+47750613 Msa1158390:intron
TTATTGTTGATGGAGAAGCT+TGG 0.606215 7_4:-47751471 None:intergenic
AAGTTGAAGAAGATGATGAG+AGG 0.611314 7_4:+47751917 Msa1158390:exon
ATTTGAACAAGTGTGAACCT+TGG 0.620030 7_4:+47750430 Msa1158390:CDS
TAAGAAGGATCCATGAGAGG+TGG 0.627347 7_4:-47751372 None:intergenic
AAACTATCCAAATCTGAGAG+AGG 0.646356 7_4:-47751882 None:intergenic
GTGTAAGAAGGATCCATGAG+AGG 0.664920 7_4:-47751375 None:intergenic
GAGTCTTCTTCATACCAACA+AGG 0.697898 7_4:-47750777 None:intergenic
CAAGAATAATGAGTGCAAGG+TGG 0.721834 7_4:+47751731 Msa1158390:CDS
GGATGGAATCTGAAACCTGG+AGG 0.741573 7_4:-47750324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTGTGTAAAAAAAAAA+TGG + chr7_4:47750254-47750273 Msa1158390:exon 15.0%
!! TAACAATAATAAAACTTACT+TGG - chr7_4:47750462-47750481 None:intergenic 15.0%
!!! ATCAATTTGCTTTTTATATA+TGG - chr7_4:47750996-47751015 None:intergenic 15.0%
!! AAAACCATATAATCATTAAA+AGG - chr7_4:47751179-47751198 None:intergenic 15.0%
!! CAAACAAAACATATATAATT+TGG - chr7_4:47752019-47752038 None:intergenic 15.0%
!!! TTTTGTGTGTAAAAAAAAAA+TGG + chr7_4:47750254-47750273 Msa1158390:exon 15.0%
!! TAACAATAATAAAACTTACT+TGG - chr7_4:47750462-47750481 None:intergenic 15.0%
!!! ATCAATTTGCTTTTTATATA+TGG - chr7_4:47750996-47751015 None:intergenic 15.0%
!! AAAACCATATAATCATTAAA+AGG - chr7_4:47751179-47751198 None:intergenic 15.0%
!! CAAACAAAACATATATAATT+TGG - chr7_4:47752019-47752038 None:intergenic 15.0%
!!! TTTTTTTACACACAAAACAA+AGG - chr7_4:47750251-47750270 None:intergenic 20.0%
!!! AGTTCCTTTTAATGATTATA+TGG + chr7_4:47751172-47751191 Msa1158390:intron 20.0%
!!! TTGTTTTTTTGTTATTGTGT+AGG + chr7_4:47751227-47751246 Msa1158390:intron 20.0%
!! ACTACTTTATGTATCAAAAT+AGG + chr7_4:47751670-47751689 Msa1158390:CDS 20.0%
!!! TTTTTTTACACACAAAACAA+AGG - chr7_4:47750251-47750270 None:intergenic 20.0%
!!! AGTTCCTTTTAATGATTATA+TGG + chr7_4:47751172-47751191 Msa1158390:intron 20.0%
!!! TTGTTTTTTTGTTATTGTGT+AGG + chr7_4:47751227-47751246 Msa1158390:intron 20.0%
!! ACTACTTTATGTATCAAAAT+AGG + chr7_4:47751670-47751689 Msa1158390:CDS 20.0%
! AAAGATAGAAAATATCCAAC+AGG + chr7_4:47750664-47750683 Msa1158390:CDS 25.0%
! ACAAAGAGATTTATCACAAA+GGG + chr7_4:47750740-47750759 Msa1158390:CDS 25.0%
! AAAAGGAGAAAAGACTAATT+GGG + chr7_4:47750825-47750844 Msa1158390:CDS 25.0%
! ATAGAGATTGAATTCAATCA+TGG + chr7_4:47751056-47751075 Msa1158390:intron 25.0%
! AAAAAACCTCAAATTTCTTC+TGG + chr7_4:47751294-47751313 Msa1158390:CDS 25.0%
!!! AAATTTCTTCTGGTCTTTTA+AGG + chr7_4:47751304-47751323 Msa1158390:CDS 25.0%
! AATTCATCATTTGTGTAAGA+AGG - chr7_4:47751390-47751409 None:intergenic 25.0%
! TTACACAAATGATGAATTCA+AGG + chr7_4:47751392-47751411 Msa1158390:CDS 25.0%
! TACACAAATGATGAATTCAA+GGG + chr7_4:47751393-47751412 Msa1158390:CDS 25.0%
!! TTGATGTTGATTATTGTTGA+TGG - chr7_4:47751484-47751503 None:intergenic 25.0%
! ATTCTATGGTAATTATCTTC+TGG - chr7_4:47751519-47751538 None:intergenic 25.0%
!! TACATAAAGTAGTTCAAGTT+TGG - chr7_4:47751663-47751682 None:intergenic 25.0%
! TAAACATTATTAGGCATCAT+AGG + chr7_4:47752083-47752102 Msa1158390:three_prime_UTR 25.0%
! TAATTAACACTGAAAAGTCT+TGG - chr7_4:47752153-47752172 None:intergenic 25.0%
!! TATTCATAGATTTTATCGAG+AGG + chr7_4:47752193-47752212 Msa1158390:three_prime_UTR 25.0%
! AAAGATAGAAAATATCCAAC+AGG + chr7_4:47750664-47750683 Msa1158390:CDS 25.0%
! ACAAAGAGATTTATCACAAA+GGG + chr7_4:47750740-47750759 Msa1158390:CDS 25.0%
! AAAAGGAGAAAAGACTAATT+GGG + chr7_4:47750825-47750844 Msa1158390:CDS 25.0%
! ATAGAGATTGAATTCAATCA+TGG + chr7_4:47751056-47751075 Msa1158390:intron 25.0%
! AAAAAACCTCAAATTTCTTC+TGG + chr7_4:47751294-47751313 Msa1158390:CDS 25.0%
!!! AAATTTCTTCTGGTCTTTTA+AGG + chr7_4:47751304-47751323 Msa1158390:CDS 25.0%
! AATTCATCATTTGTGTAAGA+AGG - chr7_4:47751390-47751409 None:intergenic 25.0%
! TTACACAAATGATGAATTCA+AGG + chr7_4:47751392-47751411 Msa1158390:CDS 25.0%
! TACACAAATGATGAATTCAA+GGG + chr7_4:47751393-47751412 Msa1158390:CDS 25.0%
!! TTGATGTTGATTATTGTTGA+TGG - chr7_4:47751484-47751503 None:intergenic 25.0%
! ATTCTATGGTAATTATCTTC+TGG - chr7_4:47751519-47751538 None:intergenic 25.0%
!! TACATAAAGTAGTTCAAGTT+TGG - chr7_4:47751663-47751682 None:intergenic 25.0%
! TAAACATTATTAGGCATCAT+AGG + chr7_4:47752083-47752102 Msa1158390:three_prime_UTR 25.0%
! TAATTAACACTGAAAAGTCT+TGG - chr7_4:47752153-47752172 None:intergenic 25.0%
!! TATTCATAGATTTTATCGAG+AGG + chr7_4:47752193-47752212 Msa1158390:three_prime_UTR 25.0%
! GAACCAATTGTTGTTAACAA+AGG + chr7_4:47750279-47750298 Msa1158390:CDS 30.0%
TCACCTTTGTTAACAACAAT+TGG - chr7_4:47750285-47750304 None:intergenic 30.0%
!! TGTTTGTTATCTCACTGAAA+AGG + chr7_4:47750365-47750384 Msa1158390:CDS 30.0%
GACAAAGAGATTTATCACAA+AGG + chr7_4:47750739-47750758 Msa1158390:CDS 30.0%
AAGACTCTTGTGTTCTATAA+AGG + chr7_4:47750793-47750812 Msa1158390:CDS 30.0%
!!! CAATTAGTCTTTTCTCCTTT+TGG - chr7_4:47750826-47750845 None:intergenic 30.0%
CAAAAGGAGAAAAGACTAAT+TGG + chr7_4:47750824-47750843 Msa1158390:CDS 30.0%
TAATCTCCCTAACAAAGAAA+AGG + chr7_4:47750888-47750907 Msa1158390:CDS 30.0%
! CACTTTCTAAAAAGTGGTAA+AGG - chr7_4:47751111-47751130 None:intergenic 30.0%
! AGTAGTCACTTTCTAAAAAG+TGG - chr7_4:47751117-47751136 None:intergenic 30.0%
! TTGTTATTGTGTAGGATGAA+TGG + chr7_4:47751235-47751254 Msa1158390:intron 30.0%
TGTTATTGTGTAGGATGAAT+GGG + chr7_4:47751236-47751255 Msa1158390:intron 30.0%
AAAAGACCAGAAGAAATTTG+AGG - chr7_4:47751303-47751322 None:intergenic 30.0%
!! CTTTTAAGGATGAACTCAAT+TGG + chr7_4:47751318-47751337 Msa1158390:CDS 30.0%
!! TGTTGATGGAATTTGTTGAT+TGG - chr7_4:47751424-47751443 None:intergenic 30.0%
! TCTGATTGTGATTTTGTTGA+TGG - chr7_4:47751438-47751457 None:intergenic 30.0%
TCAACAAAATCACAATCAGA+TGG + chr7_4:47751438-47751457 Msa1158390:CDS 30.0%
! GATGATCATAGTTGATTCTA+TGG - chr7_4:47751533-47751552 None:intergenic 30.0%
! TCAAGTTTGGATTTTGGATT+CGG - chr7_4:47751650-47751669 None:intergenic 30.0%
!! AGTAGTTCAAGTTTGGATTT+TGG - chr7_4:47751656-47751675 None:intergenic 30.0%
TATCAAAACTAGACATGGAA+AGG + chr7_4:47751814-47751833 Msa1158390:CDS 30.0%
! TCTCAGATTTGGATAGTTTT+TGG + chr7_4:47751886-47751905 Msa1158390:CDS 30.0%
! CTCAGATTTGGATAGTTTTT+GGG + chr7_4:47751887-47751906 Msa1158390:CDS 30.0%
!!! ATCCATGGCTTTTTTTATCT+TGG + chr7_4:47751960-47751979 Msa1158390:three_prime_UTR 30.0%
!!! TCCATGGCTTTTTTTATCTT+GGG + chr7_4:47751961-47751980 Msa1158390:three_prime_UTR 30.0%
! GAACCAATTGTTGTTAACAA+AGG + chr7_4:47750279-47750298 Msa1158390:CDS 30.0%
TCACCTTTGTTAACAACAAT+TGG - chr7_4:47750285-47750304 None:intergenic 30.0%
!! TGTTTGTTATCTCACTGAAA+AGG + chr7_4:47750365-47750384 Msa1158390:CDS 30.0%
GACAAAGAGATTTATCACAA+AGG + chr7_4:47750739-47750758 Msa1158390:CDS 30.0%
AAGACTCTTGTGTTCTATAA+AGG + chr7_4:47750793-47750812 Msa1158390:CDS 30.0%
!!! CAATTAGTCTTTTCTCCTTT+TGG - chr7_4:47750826-47750845 None:intergenic 30.0%
CAAAAGGAGAAAAGACTAAT+TGG + chr7_4:47750824-47750843 Msa1158390:CDS 30.0%
TAATCTCCCTAACAAAGAAA+AGG + chr7_4:47750888-47750907 Msa1158390:CDS 30.0%
! CACTTTCTAAAAAGTGGTAA+AGG - chr7_4:47751111-47751130 None:intergenic 30.0%
! AGTAGTCACTTTCTAAAAAG+TGG - chr7_4:47751117-47751136 None:intergenic 30.0%
! TTGTTATTGTGTAGGATGAA+TGG + chr7_4:47751235-47751254 Msa1158390:intron 30.0%
TGTTATTGTGTAGGATGAAT+GGG + chr7_4:47751236-47751255 Msa1158390:intron 30.0%
AAAAGACCAGAAGAAATTTG+AGG - chr7_4:47751303-47751322 None:intergenic 30.0%
!! CTTTTAAGGATGAACTCAAT+TGG + chr7_4:47751318-47751337 Msa1158390:CDS 30.0%
!! TGTTGATGGAATTTGTTGAT+TGG - chr7_4:47751424-47751443 None:intergenic 30.0%
! TCTGATTGTGATTTTGTTGA+TGG - chr7_4:47751438-47751457 None:intergenic 30.0%
TCAACAAAATCACAATCAGA+TGG + chr7_4:47751438-47751457 Msa1158390:CDS 30.0%
! GATGATCATAGTTGATTCTA+TGG - chr7_4:47751533-47751552 None:intergenic 30.0%
! TCAAGTTTGGATTTTGGATT+CGG - chr7_4:47751650-47751669 None:intergenic 30.0%
!! AGTAGTTCAAGTTTGGATTT+TGG - chr7_4:47751656-47751675 None:intergenic 30.0%
TATCAAAACTAGACATGGAA+AGG + chr7_4:47751814-47751833 Msa1158390:CDS 30.0%
! TCTCAGATTTGGATAGTTTT+TGG + chr7_4:47751886-47751905 Msa1158390:CDS 30.0%
! CTCAGATTTGGATAGTTTTT+GGG + chr7_4:47751887-47751906 Msa1158390:CDS 30.0%
!!! ATCCATGGCTTTTTTTATCT+TGG + chr7_4:47751960-47751979 Msa1158390:three_prime_UTR 30.0%
!!! TCCATGGCTTTTTTTATCTT+GGG + chr7_4:47751961-47751980 Msa1158390:three_prime_UTR 30.0%
AAAAGAAGAGAGTGATGAAG+AGG - chr7_4:47750196-47750215 None:intergenic 35.0%
ACAATTATCTCAGCATCTGT+TGG - chr7_4:47750348-47750367 None:intergenic 35.0%
AAATTCAGTGCAACTGCTAT+TGG + chr7_4:47750399-47750418 Msa1158390:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG + chr7_4:47750430-47750449 Msa1158390:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG + chr7_4:47750431-47750450 Msa1158390:CDS 35.0%
AACTTACTTGGTAAATCCCA+AGG - chr7_4:47750450-47750469 None:intergenic 35.0%
AAATGCAGAGAAAGCAAAGA+TGG + chr7_4:47750612-47750631 Msa1158390:intron 35.0%
AATGCAGAGAAAGCAAAGAT+GGG + chr7_4:47750613-47750632 Msa1158390:intron 35.0%
CTATTTGTTCTCATACCTGT+TGG - chr7_4:47750682-47750701 None:intergenic 35.0%
ACAAATAGAGCAACTGAATC+TGG + chr7_4:47750694-47750713 Msa1158390:CDS 35.0%
GAGATTTATCACAAAGGGAA+AGG + chr7_4:47750745-47750764 Msa1158390:CDS 35.0%
TATAAAGGAAGAGCTCCAAA+AGG + chr7_4:47750808-47750827 Msa1158390:CDS 35.0%
GGTTATGCATGAATTCAGAT+TGG + chr7_4:47750846-47750865 Msa1158390:CDS 35.0%
ATGCATGAATTCAGATTGGA+AGG + chr7_4:47750850-47750869 Msa1158390:CDS 35.0%
TCCCTAACAAAGAAAAGGTA+CGG + chr7_4:47750893-47750912 Msa1158390:intron 35.0%
! TCCGTACCTTTTCTTTGTTA+GGG - chr7_4:47750897-47750916 None:intergenic 35.0%
! ATCCGTACCTTTTCTTTGTT+AGG - chr7_4:47750898-47750917 None:intergenic 35.0%
! AGTGGTAAAGGTGCAAATTA+TGG - chr7_4:47751099-47751118 None:intergenic 35.0%
! TTATTGTTGATGGAGAAGCT+TGG - chr7_4:47751474-47751493 None:intergenic 35.0%
! AATGGAAGCATAGTTCATCA+TGG - chr7_4:47751571-47751590 None:intergenic 35.0%
GTGAGAATGTGTTTCCAATT+GGG - chr7_4:47751617-47751636 None:intergenic 35.0%
TGTGAGAATGTGTTTCCAAT+TGG - chr7_4:47751618-47751637 None:intergenic 35.0%
TCAAACCAATCACAAGATAC+AGG + chr7_4:47751765-47751784 Msa1158390:CDS 35.0%
AGCTGTATCAAAACTAGACA+TGG + chr7_4:47751809-47751828 Msa1158390:CDS 35.0%
AACTAGACATGGAAAGGAAT+AGG + chr7_4:47751820-47751839 Msa1158390:CDS 35.0%
ACTAGACATGGAAAGGAATA+GGG + chr7_4:47751821-47751840 Msa1158390:CDS 35.0%
GCATTGTATGATGATCTTGA+AGG + chr7_4:47751843-47751862 Msa1158390:CDS 35.0%
AAACTATCCAAATCTGAGAG+AGG - chr7_4:47751885-47751904 None:intergenic 35.0%
AAGTTGAAGAAGATGATGAG+AGG + chr7_4:47751917-47751936 Msa1158390:exon 35.0%
! AAGATATAGTTTGCGATCCA+TGG + chr7_4:47751945-47751964 Msa1158390:three_prime_UTR 35.0%
TCCCAAGATAAAAAAAGCCA+TGG - chr7_4:47751965-47751984 None:intergenic 35.0%
AAAAGAAGAGAGTGATGAAG+AGG - chr7_4:47750196-47750215 None:intergenic 35.0%
ACAATTATCTCAGCATCTGT+TGG - chr7_4:47750348-47750367 None:intergenic 35.0%
AAATTCAGTGCAACTGCTAT+TGG + chr7_4:47750399-47750418 Msa1158390:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG + chr7_4:47750430-47750449 Msa1158390:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG + chr7_4:47750431-47750450 Msa1158390:CDS 35.0%
AACTTACTTGGTAAATCCCA+AGG - chr7_4:47750450-47750469 None:intergenic 35.0%
AAATGCAGAGAAAGCAAAGA+TGG + chr7_4:47750612-47750631 Msa1158390:intron 35.0%
AATGCAGAGAAAGCAAAGAT+GGG + chr7_4:47750613-47750632 Msa1158390:intron 35.0%
CTATTTGTTCTCATACCTGT+TGG - chr7_4:47750682-47750701 None:intergenic 35.0%
ACAAATAGAGCAACTGAATC+TGG + chr7_4:47750694-47750713 Msa1158390:CDS 35.0%
GAGATTTATCACAAAGGGAA+AGG + chr7_4:47750745-47750764 Msa1158390:CDS 35.0%
TATAAAGGAAGAGCTCCAAA+AGG + chr7_4:47750808-47750827 Msa1158390:CDS 35.0%
GGTTATGCATGAATTCAGAT+TGG + chr7_4:47750846-47750865 Msa1158390:CDS 35.0%
ATGCATGAATTCAGATTGGA+AGG + chr7_4:47750850-47750869 Msa1158390:CDS 35.0%
TCCCTAACAAAGAAAAGGTA+CGG + chr7_4:47750893-47750912 Msa1158390:intron 35.0%
! TCCGTACCTTTTCTTTGTTA+GGG - chr7_4:47750897-47750916 None:intergenic 35.0%
! ATCCGTACCTTTTCTTTGTT+AGG - chr7_4:47750898-47750917 None:intergenic 35.0%
! AGTGGTAAAGGTGCAAATTA+TGG - chr7_4:47751099-47751118 None:intergenic 35.0%
! TTATTGTTGATGGAGAAGCT+TGG - chr7_4:47751474-47751493 None:intergenic 35.0%
! AATGGAAGCATAGTTCATCA+TGG - chr7_4:47751571-47751590 None:intergenic 35.0%
GTGAGAATGTGTTTCCAATT+GGG - chr7_4:47751617-47751636 None:intergenic 35.0%
TGTGAGAATGTGTTTCCAAT+TGG - chr7_4:47751618-47751637 None:intergenic 35.0%
TCAAACCAATCACAAGATAC+AGG + chr7_4:47751765-47751784 Msa1158390:CDS 35.0%
AGCTGTATCAAAACTAGACA+TGG + chr7_4:47751809-47751828 Msa1158390:CDS 35.0%
AACTAGACATGGAAAGGAAT+AGG + chr7_4:47751820-47751839 Msa1158390:CDS 35.0%
ACTAGACATGGAAAGGAATA+GGG + chr7_4:47751821-47751840 Msa1158390:CDS 35.0%
GCATTGTATGATGATCTTGA+AGG + chr7_4:47751843-47751862 Msa1158390:CDS 35.0%
AAACTATCCAAATCTGAGAG+AGG - chr7_4:47751885-47751904 None:intergenic 35.0%
AAGTTGAAGAAGATGATGAG+AGG + chr7_4:47751917-47751936 Msa1158390:exon 35.0%
! AAGATATAGTTTGCGATCCA+TGG + chr7_4:47751945-47751964 Msa1158390:three_prime_UTR 35.0%
TCCCAAGATAAAAAAAGCCA+TGG - chr7_4:47751965-47751984 None:intergenic 35.0%
TTATCTCAGCATCTGTTGGA+TGG - chr7_4:47750344-47750363 None:intergenic 40.0%
CAAAGATGGGAGAGAAAGAA+TGG + chr7_4:47750626-47750645 Msa1158390:CDS 40.0%
AAAGGAATCCAGAACCTTGT+TGG + chr7_4:47750763-47750782 Msa1158390:CDS 40.0%
TCTTCATACCAACAAGGTTC+TGG - chr7_4:47750774-47750793 None:intergenic 40.0%
GAGTCTTCTTCATACCAACA+AGG - chr7_4:47750780-47750799 None:intergenic 40.0%
TAATGAACTCAGATCCTCGA+CGG + chr7_4:47750918-47750937 Msa1158390:intron 40.0%
GAGTTAGATGCACTGTAAAG+CGG + chr7_4:47750959-47750978 Msa1158390:intron 40.0%
GAAGCATAGTTCATCATGGA+AGG - chr7_4:47751567-47751586 None:intergenic 40.0%
!! GAGATTGGATTGGTTGGAAA+TGG - chr7_4:47751589-47751608 None:intergenic 40.0%
!! GTTGTTGAGATTGGATTGGT+TGG - chr7_4:47751595-47751614 None:intergenic 40.0%
! TTGGGTTGTTGAGATTGGAT+TGG - chr7_4:47751599-47751618 None:intergenic 40.0%
TCCAATCTCAACAACCCAAT+TGG + chr7_4:47751600-47751619 Msa1158390:CDS 40.0%
! TCCAATTGGGTTGTTGAGAT+TGG - chr7_4:47751604-47751623 None:intergenic 40.0%
! GGATTTTGGATTCGGATTTG+AGG - chr7_4:47751642-47751661 None:intergenic 40.0%
TCCATGCCAACAAGTGTTTA+TGG + chr7_4:47751702-47751721 Msa1158390:CDS 40.0%
AGCCAAGAATAATGAGTGCA+AGG + chr7_4:47751728-47751747 Msa1158390:CDS 40.0%
CACCTTGCACTCATTATTCT+TGG - chr7_4:47751733-47751752 None:intergenic 40.0%
CAAGAATAATGAGTGCAAGG+TGG + chr7_4:47751731-47751750 Msa1158390:CDS 40.0%
TGAGACCTGTATCTTGTGAT+TGG - chr7_4:47751773-47751792 None:intergenic 40.0%
AGGCATCATAGGAAAGTTCT+TGG + chr7_4:47752094-47752113 Msa1158390:three_prime_UTR 40.0%
TTATCTCAGCATCTGTTGGA+TGG - chr7_4:47750344-47750363 None:intergenic 40.0%
CAAAGATGGGAGAGAAAGAA+TGG + chr7_4:47750626-47750645 Msa1158390:CDS 40.0%
AAAGGAATCCAGAACCTTGT+TGG + chr7_4:47750763-47750782 Msa1158390:CDS 40.0%
TCTTCATACCAACAAGGTTC+TGG - chr7_4:47750774-47750793 None:intergenic 40.0%
GAGTCTTCTTCATACCAACA+AGG - chr7_4:47750780-47750799 None:intergenic 40.0%
TAATGAACTCAGATCCTCGA+CGG + chr7_4:47750918-47750937 Msa1158390:intron 40.0%
GAGTTAGATGCACTGTAAAG+CGG + chr7_4:47750959-47750978 Msa1158390:intron 40.0%
GAAGCATAGTTCATCATGGA+AGG - chr7_4:47751567-47751586 None:intergenic 40.0%
!! GAGATTGGATTGGTTGGAAA+TGG - chr7_4:47751589-47751608 None:intergenic 40.0%
!! GTTGTTGAGATTGGATTGGT+TGG - chr7_4:47751595-47751614 None:intergenic 40.0%
! TTGGGTTGTTGAGATTGGAT+TGG - chr7_4:47751599-47751618 None:intergenic 40.0%
TCCAATCTCAACAACCCAAT+TGG + chr7_4:47751600-47751619 Msa1158390:CDS 40.0%
! TCCAATTGGGTTGTTGAGAT+TGG - chr7_4:47751604-47751623 None:intergenic 40.0%
! GGATTTTGGATTCGGATTTG+AGG - chr7_4:47751642-47751661 None:intergenic 40.0%
TCCATGCCAACAAGTGTTTA+TGG + chr7_4:47751702-47751721 Msa1158390:CDS 40.0%
AGCCAAGAATAATGAGTGCA+AGG + chr7_4:47751728-47751747 Msa1158390:CDS 40.0%
CACCTTGCACTCATTATTCT+TGG - chr7_4:47751733-47751752 None:intergenic 40.0%
CAAGAATAATGAGTGCAAGG+TGG + chr7_4:47751731-47751750 Msa1158390:CDS 40.0%
TGAGACCTGTATCTTGTGAT+TGG - chr7_4:47751773-47751792 None:intergenic 40.0%
AGGCATCATAGGAAAGTTCT+TGG + chr7_4:47752094-47752113 Msa1158390:three_prime_UTR 40.0%
CAAACTCTTGATCTTCCTCC+AGG + chr7_4:47750309-47750328 Msa1158390:CDS 45.0%
! GTTGGATGGAATCTGAAACC+TGG - chr7_4:47750330-47750349 None:intergenic 45.0%
GAGCAACTGAATCTGGTTAC+TGG + chr7_4:47750701-47750720 Msa1158390:CDS 45.0%
TCTGGTTACTGGAAAGCTAC+AGG + chr7_4:47750712-47750731 Msa1158390:CDS 45.0%
!! AGGATGAATGGGTTGTGTCA+AGG + chr7_4:47751247-47751266 Msa1158390:intron 45.0%
!! GGATGAATGGGTTGTGTCAA+GGG + chr7_4:47751248-47751267 Msa1158390:intron 45.0%
TTCTTCACTTCCACCTCTCA+TGG + chr7_4:47751362-47751381 Msa1158390:CDS 45.0%
TAAGAAGGATCCATGAGAGG+TGG - chr7_4:47751375-47751394 None:intergenic 45.0%
GTGTAAGAAGGATCCATGAG+AGG - chr7_4:47751378-47751397 None:intergenic 45.0%
! GCCATAAACACTTGTTGGCA+TGG - chr7_4:47751706-47751725 None:intergenic 45.0%
GCTGAGCCATAAACACTTGT+TGG - chr7_4:47751711-47751730 None:intergenic 45.0%
AGTTGCACCTCTCTCAGATT+TGG + chr7_4:47751875-47751894 Msa1158390:CDS 45.0%
CAAACTCTTGATCTTCCTCC+AGG + chr7_4:47750309-47750328 Msa1158390:CDS 45.0%
! GTTGGATGGAATCTGAAACC+TGG - chr7_4:47750330-47750349 None:intergenic 45.0%
GAGCAACTGAATCTGGTTAC+TGG + chr7_4:47750701-47750720 Msa1158390:CDS 45.0%
TCTGGTTACTGGAAAGCTAC+AGG + chr7_4:47750712-47750731 Msa1158390:CDS 45.0%
!! AGGATGAATGGGTTGTGTCA+AGG + chr7_4:47751247-47751266 Msa1158390:intron 45.0%
!! GGATGAATGGGTTGTGTCAA+GGG + chr7_4:47751248-47751267 Msa1158390:intron 45.0%
TTCTTCACTTCCACCTCTCA+TGG + chr7_4:47751362-47751381 Msa1158390:CDS 45.0%
TAAGAAGGATCCATGAGAGG+TGG - chr7_4:47751375-47751394 None:intergenic 45.0%
GTGTAAGAAGGATCCATGAG+AGG - chr7_4:47751378-47751397 None:intergenic 45.0%
! GCCATAAACACTTGTTGGCA+TGG - chr7_4:47751706-47751725 None:intergenic 45.0%
GCTGAGCCATAAACACTTGT+TGG - chr7_4:47751711-47751730 None:intergenic 45.0%
AGTTGCACCTCTCTCAGATT+TGG + chr7_4:47751875-47751894 Msa1158390:CDS 45.0%
!! TTTATATTATAAACATTATT+AGG + chr7_4:47752074-47752093 Msa1158390:three_prime_UTR 5.0%
!! TTTATATTATAAACATTATT+AGG + chr7_4:47752074-47752093 Msa1158390:three_prime_UTR 5.0%
! GGATGGAATCTGAAACCTGG+AGG - chr7_4:47750327-47750346 None:intergenic 50.0%
! GAGAGAGGTGCAACTGATGA+AGG - chr7_4:47751870-47751889 None:intergenic 50.0%
! GGATGGAATCTGAAACCTGG+AGG - chr7_4:47750327-47750346 None:intergenic 50.0%
! GAGAGAGGTGCAACTGATGA+AGG - chr7_4:47751870-47751889 None:intergenic 50.0%
GCACTGTAACACAGCCGTCG+AGG - chr7_4:47750935-47750954 None:intergenic 60.0%
GCACTGTAACACAGCCGTCG+AGG - chr7_4:47750935-47750954 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 47750095 47752256 47750095 ID=Msa1158390;Name=Msa1158390
chr7_4 mRNA 47750095 47752256 47750095 ID=Msa1158390-mRNA-1;Parent=Msa1158390;Name=Msa1158390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=178|1|1|1|1|1|3|339|382
chr7_4 exon 47750095 47750462 47750095 ID=Msa1158390-mRNA-1:exon:12737;Parent=Msa1158390-mRNA-1
chr7_4 exon 47750620 47750909 47750620 ID=Msa1158390-mRNA-1:exon:12738;Parent=Msa1158390-mRNA-1
chr7_4 exon 47751249 47752256 47751249 ID=Msa1158390-mRNA-1:exon:12739;Parent=Msa1158390-mRNA-1
chr7_4 five_prime_UTR 47750095 47750272 47750095 ID=Msa1158390-mRNA-1:five_prime_utr;Parent=Msa1158390-mRNA-1
chr7_4 CDS 47750273 47750462 47750273 ID=Msa1158390-mRNA-1:cds;Parent=Msa1158390-mRNA-1
chr7_4 CDS 47750620 47750909 47750620 ID=Msa1158390-mRNA-1:cds;Parent=Msa1158390-mRNA-1
chr7_4 CDS 47751249 47751917 47751249 ID=Msa1158390-mRNA-1:cds;Parent=Msa1158390-mRNA-1
chr7_4 three_prime_UTR 47751918 47752256 47751918 ID=Msa1158390-mRNA-1:three_prime_utr;Parent=Msa1158390-mRNA-1
Gene Sequence

>Msa1158390

ATGGAAGAACCAATTGTTGTTAACAAAGGTGAAGATCAAACTCTTGATCTTCCTCCAGGTTTCAGATTCCATCCAACAGATGCTGAGATAATTGTTTGTTATCTCACTGAAAAGGTTAAAAATAGCAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAAGAATGGTACTTTTTTTGTCAGAAAGATAGAAAATATCCAACAGGTATGAGAACAAATAGAGCAACTGAATCTGGTTACTGGAAAGCTACAGGAAAAGACAAAGAGATTTATCACAAAGGGAAAGGAATCCAGAACCTTGTTGGTATGAAGAAGACTCTTGTGTTCTATAAAGGAAGAGCTCCAAAAGGAGAAAAGACTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCAACTCATAATCTCCCTAACAAAGAAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAAAAACCTCAAATTTCTTCTGGTCTTTTAAGGATGAACTCAATTGGTCATGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTTCTTACACAAATGATGAATTCAAGGGAATTACCAATCAACAAATTCCATCAACAAAATCACAATCAGATGGTTATTATCTTCCAAGCTTCTCCATCAACAATAATCAACATCAATTTGCAATCAAGCCAGAAGATAATTACCATAGAATCAACTATGATCATCATGACATTAATCCTTCCATGATGAACTATGCTTCCATTTCCAACCAATCCAATCTCAACAACCCAATTGGAAACACATTCTCACAACCTCAAATCCGAATCCAAAATCCAAACTTGAACTACTTTATGTATCAAAATAGGATGCAAAGTTCCATGCCAACAAGTGTTTATGGCTCAGCCAAGAATAATGAGTGCAAGGTGGAACAATTCTCTTCAAACCAATCACAAGATACAGGTCTCAGCAATGACACATCATCAGCTGTATCAAAACTAGACATGGAAAGGAATAGGGCATTGTATGATGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGGATAGTTTTTGGGACTATTGA

Protein sequence

>Msa1158390

MEEPIVVNKGEDQTLDLPPGFRFHPTDAEIIVCYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYHKGKGIQNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFATHNLPNKEKDEWVVSRVFHKNTDVKKPQISSGLLRMNSIGHDDLLDYSSLPPLMDPSYTNDEFKGITNQQIPSTKSQSDGYYLPSFSINNNQHQFAIKPEDNYHRINYDHHDINPSMMNYASISNQSNLNNPIGNTFSQPQIRIQNPNLNYFMYQNRMQSSMPTSVYGSAKNNECKVEQFSSNQSQDTGLSNDTSSAVSKLDMERNRALYDDLEGPSSVAPLSDLDSFWDY*