Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586150 | XP_013454546.1 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 1.97e-141 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586150 | sp|Q6K678|HDR1_ORYSJ | 62.121 | 198 | 59 | 3 | 15 | 199 | 9 | 203 | 2.83e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0586150 | 0.834825 | 2.396064e-56 | -8.615850e-47 |
| Msa0093440 | Msa0586150 | 0.803154 | 3.991474e-49 | -8.615850e-47 |
| Msa0181410 | Msa0586150 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0457370 | Msa0586150 | 0.801550 | 8.541854e-49 | -8.615850e-47 |
| Msa0467740 | Msa0586150 | -0.807287 | 5.442048e-50 | -8.615850e-47 |
| Msa0304990 | Msa0586150 | 0.803011 | 4.273041e-49 | -8.615850e-47 |
| Msa0334170 | Msa0586150 | 0.800940 | 1.138690e-48 | -8.615850e-47 |
| Msa0340530 | Msa0586150 | 0.808968 | 2.386013e-50 | -8.615850e-47 |
| Msa0363460 | Msa0586150 | 0.801037 | 1.087855e-48 | -8.615850e-47 |
| Msa0514130 | Msa0586150 | -0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa0527900 | Msa0586150 | 0.937008 | 6.951890e-98 | -8.615850e-47 |
| Msa0544930 | Msa0586150 | 0.818083 | 2.358082e-52 | -8.615850e-47 |
| Msa0564490 | Msa0586150 | 0.810909 | 9.115132e-51 | -8.615850e-47 |
| Msa0586150 | Msa0621190 | -0.804217 | 2.401238e-49 | -8.615850e-47 |
| Msa0586150 | Msa0635470 | 0.805958 | 1.038153e-49 | -8.615850e-47 |
| Msa0586150 | Msa0641020 | 0.812824 | 3.490167e-51 | -8.615850e-47 |
| Msa0586150 | Msa0663330 | 0.915095 | 8.839809e-85 | -8.615850e-47 |
| Msa0586150 | Msa0664020 | 0.930412 | 1.702094e-93 | -8.615850e-47 |
| Msa0586150 | Msa0722930 | 0.835031 | 2.125475e-56 | -8.615850e-47 |
| Msa0586150 | Msa0723140 | 0.836206 | 1.071684e-56 | -8.615850e-47 |
| Msa0586150 | Msa0733670 | -0.812904 | 3.352587e-51 | -8.615850e-47 |
| Msa0586150 | Msa0843280 | 0.803887 | 2.812637e-49 | -8.615850e-47 |
| Msa0586150 | Msa0883350 | 0.800307 | 1.532606e-48 | -8.615850e-47 |
| Msa0586150 | Msa0883670 | 0.802943 | 4.412468e-49 | -8.615850e-47 |
| Msa0586150 | Msa0951720 | 0.800863 | 1.180699e-48 | -8.615850e-47 |
| Msa0586150 | Msa1081710 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0586150 | Msa1108780 | 0.801562 | 8.491885e-49 | -8.615850e-47 |
| Msa0586150 | Msa1139240 | 0.804421 | 2.177705e-49 | -8.615850e-47 |
| Msa0586150 | Msa1166170 | 0.807094 | 5.978283e-50 | -8.615850e-47 |
| Msa0586150 | Msa1166270 | 0.811017 | 8.638293e-51 | -8.615850e-47 |
| Msa0586150 | Msa1221200 | -0.805624 | 1.220049e-49 | -8.615850e-47 |
| Msa0586150 | Msa1289990 | 0.813806 | 2.123802e-51 | -8.615850e-47 |
| Msa0586150 | Msa1410180 | 0.812678 | 3.756141e-51 | -8.615850e-47 |
| Msa0586150 | Msa1445250 | 0.825003 | 5.939266e-54 | -8.615850e-47 |
| Msa0586150 | Msa1465890 | -0.802797 | 4.731213e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586150 | MtrunA17_Chr4g0001971 | 95.694 | 209 | 9 | 0 | 1 | 209 | 1 | 209 | 1.81e-145 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586150 | AT1G80940.1 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 1.96e-79 | 236 |
| Msa0586150 | AT1G80940.3 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.90e-70 | 210 |
| Msa0586150 | AT1G80940.2 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 8.53e-49 | 157 |
| Msa0586150 | AT1G80940.4 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 9.99e-31 | 110 |
Find 55 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4_2:-7268367 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4_2:-7267868 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4_2:-7267713 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+TGG | 0.269107 | 4_2:-7267612 | None:intergenic |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4_2:+7267658 | Msa0586150:CDS |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4_2:-7267704 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4_2:-7267635 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4_2:-7267619 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4_2:-7265756 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4_2:-7268388 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4_2:+7265722 | None:intergenic |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4_2:+7267788 | Msa0586150:CDS |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4_2:-7267791 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4_2:+7268173 | Msa0586150:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4_2:+7268334 | Msa0586150:CDS |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4_2:+7267631 | Msa0586150:CDS |
| GGAGTATCTTCCGGGTTGCT+GGG | 0.476431 | 4_2:-7267611 | None:intergenic |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4_2:+7268365 | Msa0586150:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4_2:-7267767 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4_2:+7267559 | Msa0586150:intron |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4_2:-7267620 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4_2:+7268190 | Msa0586150:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4_2:-7267741 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4_2:+7267670 | Msa0586150:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4_2:-7267632 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4_2:+7265780 | Msa0586150:CDS |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4_2:+7267776 | Msa0586150:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4_2:-7265768 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4_2:+7268344 | Msa0586150:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4_2:+7265726 | Msa0586150:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4_2:+7268204 | Msa0586150:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4_2:+7267622 | Msa0586150:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4_2:+7267775 | Msa0586150:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4_2:-7267733 | None:intergenic |
| TAAAACACCACCCAGCAACC+CGG | 0.589175 | 4_2:+7267601 | Msa0586150:CDS |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4_2:-7267660 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4_2:+7267865 | Msa0586150:CDS |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4_2:+7267780 | Msa0586150:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4_2:+7267546 | Msa0586150:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4_2:+7268355 | Msa0586150:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4_2:-7267761 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4_2:-7267747 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4_2:+7268196 | Msa0586150:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4_2:+7268356 | Msa0586150:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4_2:-7267693 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4_2:+7268235 | Msa0586150:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4_2:-7267740 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4_2:+7267837 | Msa0586150:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4_2:+7268193 | Msa0586150:CDS |
| GTATCTTCCGGGTTGCTGGG+TGG | 0.662018 | 4_2:-7267608 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4_2:-7267764 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4_2:+7267710 | Msa0586150:CDS |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4_2:-7265765 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4_2:+7267820 | Msa0586150:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4_2:+7267549 | Msa0586150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACTACAAATAATATA+TGG | - | chr4_2:7266039-7266058 | None:intergenic | 10.0% |
| !! | ATATATTATTTGTAGTATTT+AGG | + | chr4_2:7266038-7266057 | Msa0586150:intron | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | - | chr4_2:7266683-7266702 | None:intergenic | 10.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | + | chr4_2:7265984-7266003 | Msa0586150:intron | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | + | chr4_2:7266355-7266374 | Msa0586150:intron | 15.0% |
| !! | TAACATGAAAATAATAGTAT+TGG | - | chr4_2:7266508-7266527 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | - | chr4_2:7266636-7266655 | None:intergenic | 15.0% |
| !! | AAAATTGAAACATTCATATA+TGG | - | chr4_2:7266934-7266953 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | - | chr4_2:7266990-7267009 | None:intergenic | 15.0% |
| !! | TTCAATGATTATTATAACTA+TGG | - | chr4_2:7267309-7267328 | None:intergenic | 15.0% |
| !! | TACTACAAATAATATATGGT+GGG | - | chr4_2:7266035-7266054 | None:intergenic | 20.0% |
| !! | ATACTACAAATAATATATGG+TGG | - | chr4_2:7266036-7266055 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | + | chr4_2:7266156-7266175 | Msa0586150:intron | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | - | chr4_2:7266351-7266370 | None:intergenic | 20.0% |
| !!! | AATTGTTATTTTTGTGATCA+TGG | + | chr4_2:7266689-7266708 | Msa0586150:intron | 20.0% |
| !! | ATATGGTAAATGAACAATAA+AGG | - | chr4_2:7266917-7266936 | None:intergenic | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | + | chr4_2:7267000-7267019 | Msa0586150:intron | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | + | chr4_2:7267013-7267032 | Msa0586150:intron | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | + | chr4_2:7267521-7267540 | Msa0586150:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | - | chr4_2:7267906-7267925 | None:intergenic | 20.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | - | chr4_2:7265808-7265827 | None:intergenic | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | + | chr4_2:7266196-7266215 | Msa0586150:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | + | chr4_2:7266321-7266340 | Msa0586150:intron | 25.0% |
| !! | ATTGAACATGTTTTCAATCT+AGG | - | chr4_2:7266464-7266483 | None:intergenic | 25.0% |
| ! | ATTGAATTTCTTGATGTACA+AGG | + | chr4_2:7266725-7266744 | Msa0586150:intron | 25.0% |
| ! | TTGAATTTCTTGATGTACAA+GGG | + | chr4_2:7266726-7266745 | Msa0586150:intron | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | + | chr4_2:7267012-7267031 | Msa0586150:intron | 25.0% |
| ! | ATACATTTAGTTAAGTGCAA+CGG | + | chr4_2:7267328-7267347 | Msa0586150:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | - | chr4_2:7267918-7267937 | None:intergenic | 25.0% |
| ! | CAACAGGATAAAAAATAAAC+TGG | - | chr4_2:7268032-7268051 | None:intergenic | 25.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | + | chr4_2:7266317-7266336 | Msa0586150:intron | 30.0% |
| ! | ATAGTATTGGACTATTGTGT+TGG | - | chr4_2:7266495-7266514 | None:intergenic | 30.0% |
| ATTAGATCTCATCAGAACTT+CGG | + | chr4_2:7266531-7266550 | Msa0586150:intron | 30.0% | |
| ! | TGTTGGTTACTTTCATAAAG+AGG | - | chr4_2:7266619-7266638 | None:intergenic | 30.0% |
| TGAATTTCTTGATGTACAAG+GGG | + | chr4_2:7266727-7266746 | Msa0586150:intron | 30.0% | |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | + | chr4_2:7266791-7266810 | Msa0586150:intron | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | + | chr4_2:7266792-7266811 | Msa0586150:intron | 30.0% |
| ATTAAGAAGTCACATATGCA+AGG | - | chr4_2:7266879-7266898 | None:intergenic | 30.0% | |
| TTGGATACTGAAATTTGGAA+GGG | - | chr4_2:7267195-7267214 | None:intergenic | 30.0% | |
| ATTGGATACTGAAATTTGGA+AGG | - | chr4_2:7267196-7267215 | None:intergenic | 30.0% | |
| TTCCAAATTTCAGTATCCAA+TGG | + | chr4_2:7267195-7267214 | Msa0586150:intron | 30.0% | |
| TACCATTGGATACTGAAATT+TGG | - | chr4_2:7267200-7267219 | None:intergenic | 30.0% | |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | - | chr4_2:7267707-7267726 | None:intergenic | 30.0% |
| TAACCTTTCTGTTCATTTCT+TGG | - | chr4_2:7267871-7267890 | None:intergenic | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | - | chr4_2:7267898-7267917 | None:intergenic | 30.0% | |
| CAGGATAAAAAATAAACTGG+TGG | - | chr4_2:7268029-7268048 | None:intergenic | 30.0% | |
| !!! | CAACACTTTTTCTCGTATAT+TGG | - | chr4_2:7268081-7268100 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | + | chr4_2:7268091-7268110 | Msa0586150:intron | 30.0% |
| CTAGATTTCCAGAAAATCTG+AGG | - | chr4_2:7265771-7265790 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | + | chr4_2:7265780-7265799 | Msa0586150:CDS | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | + | chr4_2:7266245-7266264 | Msa0586150:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | + | chr4_2:7266278-7266297 | Msa0586150:intron | 35.0% | |
| CAACACAAAAACTTTCTAGG+AGG | - | chr4_2:7266577-7266596 | None:intergenic | 35.0% | |
| GTGCAACACAAAAACTTTCT+AGG | - | chr4_2:7266580-7266599 | None:intergenic | 35.0% | |
| GAATTTCTTGATGTACAAGG+GGG | + | chr4_2:7266728-7266747 | Msa0586150:intron | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | + | chr4_2:7267030-7267049 | Msa0586150:intron | 35.0% | |
| GTTCATTCTGCTAAGTTCAA+AGG | - | chr4_2:7267155-7267174 | None:intergenic | 35.0% | |
| GCAGAATGAACTTTGAATTG+TGG | + | chr4_2:7267164-7267183 | Msa0586150:intron | 35.0% | |
| ! | TCAATAAGCTCTGATACCAT+TGG | - | chr4_2:7267214-7267233 | None:intergenic | 35.0% |
| !!! | TCTTTTTTTGAACCCTACCA+TGG | - | chr4_2:7267434-7267453 | None:intergenic | 35.0% |
| ! | AGGTTCTAATGGTTCAAACA+AGG | - | chr4_2:7267696-7267715 | None:intergenic | 35.0% |
| GAACCTATAAAGAACAGCAA+CGG | + | chr4_2:7267710-7267729 | Msa0586150:CDS | 35.0% | |
| ! | TAGTTTGCAGACTCAAAATC+AGG | - | chr4_2:7267770-7267789 | None:intergenic | 35.0% |
| AAAGCTTGTCAATGTTGATG+TGG | + | chr4_2:7267820-7267839 | Msa0586150:CDS | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | + | chr4_2:7267865-7267884 | Msa0586150:CDS | 35.0% | |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | + | chr4_2:7268086-7268105 | Msa0586150:intron | 35.0% |
| TTGCAGGATAGAGAAATAGA+TGG | + | chr4_2:7268173-7268192 | Msa0586150:intron | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | + | chr4_2:7268334-7268353 | Msa0586150:CDS | 35.0% | |
| AAAATCTGAGGAGGTGAAAC+AGG | - | chr4_2:7265759-7265778 | None:intergenic | 40.0% | |
| ! | TTTCACCTCCTCAGATTTTC+TGG | + | chr4_2:7265760-7265779 | Msa0586150:CDS | 40.0% |
| GATTTCCAGAAAATCTGAGG+AGG | - | chr4_2:7265768-7265787 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | - | chr4_2:7266602-7266621 | None:intergenic | 40.0% |
| TAAAAACCCATGTGGCTGTT+TGG | + | chr4_2:7266753-7266772 | Msa0586150:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | - | chr4_2:7266867-7266886 | None:intergenic | 40.0% | |
| CTAAGTTCAAAGGCAGTTCA+AGG | - | chr4_2:7267145-7267164 | None:intergenic | 40.0% | |
| ATGCTTCATAGATAGATCCC+TGG | + | chr4_2:7267408-7267427 | Msa0586150:intron | 40.0% | |
| !! | ACATTAGGAGGAGTATCTTC+CGG | - | chr4_2:7267623-7267642 | None:intergenic | 40.0% |
| TTTGCAGACTCAAAATCAGG+TGG | - | chr4_2:7267767-7267786 | None:intergenic | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | + | chr4_2:7267775-7267794 | Msa0586150:CDS | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | + | chr4_2:7267776-7267795 | Msa0586150:CDS | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | - | chr4_2:7267965-7267984 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAC+AGG | - | chr4_2:7268048-7268067 | None:intergenic | 40.0% | |
| ! | TATTGCTAGCATTTTCCGCA+TGG | + | chr4_2:7268120-7268139 | Msa0586150:intron | 40.0% |
| ! | CATTTGACGACTTTTGTTGC+AGG | + | chr4_2:7268157-7268176 | Msa0586150:intron | 40.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | + | chr4_2:7265726-7265745 | Msa0586150:CDS | 45.0% |
| ! | GAGAGAGAAGCGTACAATAG+TGG | + | chr4_2:7266267-7266286 | Msa0586150:intron | 45.0% |
| AGGGGGAATAAAAACCCATG+TGG | + | chr4_2:7266745-7266764 | Msa0586150:intron | 45.0% | |
| CACTATCCAAACAGCCACAT+GGG | - | chr4_2:7266762-7266781 | None:intergenic | 45.0% | |
| ACACTATCCAAACAGCCACA+TGG | - | chr4_2:7266763-7266782 | None:intergenic | 45.0% | |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | - | chr4_2:7266835-7266854 | None:intergenic | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | - | chr4_2:7266838-7266857 | None:intergenic | 45.0% |
| CATGGAGGCTACACTAAAGA+GGG | - | chr4_2:7266849-7266868 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | - | chr4_2:7266850-7266869 | None:intergenic | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | + | chr4_2:7266850-7266869 | Msa0586150:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | - | chr4_2:7266864-7266883 | None:intergenic | 45.0% | |
| !! | CATTAGGAGGAGTATCTTCC+GGG | - | chr4_2:7267622-7267641 | None:intergenic | 45.0% |
| GGAAGATACTCCTCCTAATG+TGG | + | chr4_2:7267622-7267641 | Msa0586150:CDS | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | + | chr4_2:7267631-7267650 | Msa0586150:CDS | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | - | chr4_2:7267635-7267654 | None:intergenic | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | - | chr4_2:7267638-7267657 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | + | chr4_2:7267658-7267677 | Msa0586150:CDS | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | - | chr4_2:7267663-7267682 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | + | chr4_2:7267780-7267799 | Msa0586150:CDS | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | + | chr4_2:7267788-7267807 | Msa0586150:CDS | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | - | chr4_2:7267794-7267813 | None:intergenic | 45.0% | |
| ! | GTCGTCAAATGCATTAGCCT+CGG | - | chr4_2:7268148-7268167 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | + | chr4_2:7268190-7268209 | Msa0586150:CDS | 45.0% |
| ACTGAGCAAATGGCAGATGA+AGG | + | chr4_2:7268344-7268363 | Msa0586150:CDS | 45.0% | |
| !!! | TTTTTTTATGATAAAAATTT+TGG | - | chr4_2:7266382-7266401 | None:intergenic | 5.0% |
| TACGCTTCTCTCTCCTCTCT+TGG | - | chr4_2:7266261-7266280 | None:intergenic | 50.0% | |
| AGTTATGGGACAGCTAACCC+TGG | + | chr4_2:7266806-7266825 | Msa0586150:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | - | chr4_2:7266845-7266864 | None:intergenic | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | + | chr4_2:7267414-7267433 | Msa0586150:intron | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | + | chr4_2:7267419-7267438 | Msa0586150:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | - | chr4_2:7267428-7267447 | None:intergenic | 50.0% | |
| ! | TTTTGAACCCTACCATGGCC+AGG | - | chr4_2:7267429-7267448 | None:intergenic | 50.0% |
| AACGTGTTCACCACAGCTAG+CGG | + | chr4_2:7267545-7267564 | Msa0586150:intron | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | - | chr4_2:7267558-7267577 | None:intergenic | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | + | chr4_2:7267559-7267578 | Msa0586150:intron | 50.0% | |
| TAAAACACCACCCAGCAACC+CGG | + | chr4_2:7267601-7267620 | Msa0586150:CDS | 50.0% | |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | - | chr4_2:7267716-7267735 | None:intergenic | 50.0% |
| AGGTGGAGGAAGCAAAGACT+CGG | - | chr4_2:7267750-7267769 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | - | chr4_2:7267764-7267783 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | + | chr4_2:7267837-7267856 | Msa0586150:CDS | 50.0% |
| TGGACTAAACGAACAGCTGG+AGG | + | chr4_2:7268193-7268212 | Msa0586150:CDS | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | + | chr4_2:7268196-7268215 | Msa0586150:CDS | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | + | chr4_2:7268356-7268375 | Msa0586150:CDS | 50.0% | |
| TTGGTTGAAGGTGGAGGCCA+GGG | - | chr4_2:7266826-7266845 | None:intergenic | 55.0% | |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | - | chr4_2:7266832-7266851 | None:intergenic | 55.0% |
| GATAGATCCCTGGCCATGGT+AGG | + | chr4_2:7267418-7267437 | Msa0586150:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | + | chr4_2:7267546-7267565 | Msa0586150:intron | 55.0% | |
| ! | GGAGTATCTTCCGGGTTGCT+GGG | - | chr4_2:7267614-7267633 | None:intergenic | 55.0% |
| !! | AGGAGTATCTTCCGGGTTGC+TGG | - | chr4_2:7267615-7267634 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | + | chr4_2:7267670-7267689 | Msa0586150:CDS | 55.0% |
| GGAAGCAAAGACTCGGCAGA+GGG | - | chr4_2:7267743-7267762 | None:intergenic | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | - | chr4_2:7267744-7267763 | None:intergenic | 55.0% | |
| ! | GCATTTTCCGCATGGAACCG+AGG | + | chr4_2:7268128-7268147 | Msa0586150:intron | 55.0% |
| ! | GCATTAGCCTCGGTTCCATG+CGG | - | chr4_2:7268138-7268157 | None:intergenic | 55.0% |
| AACAGCTGGAGGAGGATTCG+CGG | + | chr4_2:7268204-7268223 | Msa0586150:CDS | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | + | chr4_2:7268235-7268254 | Msa0586150:CDS | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | + | chr4_2:7268355-7268374 | Msa0586150:CDS | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | + | chr4_2:7268365-7268384 | Msa0586150:CDS | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | - | chr4_2:7268370-7268389 | None:intergenic | 55.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | - | chr4_2:7266827-7266846 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | + | chr4_2:7267549-7267568 | Msa0586150:intron | 60.0% | |
| GTATCTTCCGGGTTGCTGGG+TGG | - | chr4_2:7267611-7267630 | None:intergenic | 60.0% | |
| AAGACTCGGCAGAGGGTCGT+CGG | - | chr4_2:7267736-7267755 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 7265723 | 7268403 | 7265723 | ID=Msa0586150;Name=Msa0586150 |
| chr4_2 | mRNA | 7265723 | 7268403 | 7265723 | ID=Msa0586150-mRNA-1;Parent=Msa0586150;Name=Msa0586150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|209 |
| chr4_2 | exon | 7265723 | 7265801 | 7265723 | ID=Msa0586150-mRNA-1:exon:1824;Parent=Msa0586150-mRNA-1 |
| chr4_2 | exon | 7267561 | 7267886 | 7267561 | ID=Msa0586150-mRNA-1:exon:1825;Parent=Msa0586150-mRNA-1 |
| chr4_2 | exon | 7268179 | 7268403 | 7268179 | ID=Msa0586150-mRNA-1:exon:1826;Parent=Msa0586150-mRNA-1 |
| chr4_2 | CDS | 7265723 | 7265801 | 7265723 | ID=Msa0586150-mRNA-1:cds;Parent=Msa0586150-mRNA-1 |
| chr4_2 | CDS | 7267561 | 7267886 | 7267561 | ID=Msa0586150-mRNA-1:cds;Parent=Msa0586150-mRNA-1 |
| chr4_2 | CDS | 7268179 | 7268403 | 7268179 | ID=Msa0586150-mRNA-1:cds;Parent=Msa0586150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
