Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564490 | XP_003629705.2 | 88.221 | 416 | 35 | 4 | 1 | 402 | 1 | 416 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564490 | G7LHY7 | 88.221 | 416 | 35 | 4 | 1 | 402 | 73 | 488 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0564490 | 0.800232 | 1.587085e-48 | -8.615850e-47 |
| Msa0021980 | Msa0564490 | 0.834850 | 2.361440e-56 | -8.615850e-47 |
| Msa0050880 | Msa0564490 | 0.843286 | 1.538854e-58 | -8.615850e-47 |
| Msa0053480 | Msa0564490 | 0.813158 | 2.949317e-51 | -8.615850e-47 |
| Msa0053960 | Msa0564490 | 0.802109 | 6.558254e-49 | -8.615850e-47 |
| Msa0077390 | Msa0564490 | 0.811835 | 5.737506e-51 | -8.615850e-47 |
| Msa0088550 | Msa0564490 | 0.804691 | 1.913197e-49 | -8.615850e-47 |
| Msa0093440 | Msa0564490 | 0.812576 | 3.954892e-51 | -8.615850e-47 |
| Msa0094940 | Msa0564490 | -0.801437 | 9.009846e-49 | -8.615850e-47 |
| Msa0135360 | Msa0564490 | 0.803985 | 2.684578e-49 | -8.615850e-47 |
| Msa0179860 | Msa0564490 | 0.816326 | 5.857296e-52 | -8.615850e-47 |
| Msa0181410 | Msa0564490 | 0.800406 | 1.462779e-48 | -8.615850e-47 |
| Msa0226620 | Msa0564490 | -0.811273 | 7.600968e-51 | -8.615850e-47 |
| Msa0379850 | Msa0564490 | 0.800914 | 1.152514e-48 | -8.615850e-47 |
| Msa0389050 | Msa0564490 | 0.814259 | 1.687491e-51 | -8.615850e-47 |
| Msa0411000 | Msa0564490 | 0.872323 | 3.473688e-67 | -8.615850e-47 |
| Msa0419620 | Msa0564490 | -0.801800 | 7.589170e-49 | -8.615850e-47 |
| Msa0429170 | Msa0564490 | 0.812912 | 3.338697e-51 | -8.615850e-47 |
| Msa0439700 | Msa0564490 | 0.814460 | 1.523153e-51 | -8.615850e-47 |
| Msa0455230 | Msa0564490 | 0.861797 | 7.970494e-64 | -8.615850e-47 |
| Msa0457370 | Msa0564490 | 0.802626 | 5.131602e-49 | -8.615850e-47 |
| Msa0465680 | Msa0564490 | -0.805399 | 1.360200e-49 | -8.615850e-47 |
| Msa0240780 | Msa0564490 | 0.805992 | 1.021139e-49 | -8.615850e-47 |
| Msa0260270 | Msa0564490 | -0.805721 | 1.164573e-49 | -8.615850e-47 |
| Msa0311330 | Msa0564490 | 0.802124 | 6.509367e-49 | -8.615850e-47 |
| Msa0327860 | Msa0564490 | 0.807977 | 3.884023e-50 | -8.615850e-47 |
| Msa0334170 | Msa0564490 | 0.819545 | 1.098192e-52 | -8.615850e-47 |
| Msa0363460 | Msa0564490 | 0.861499 | 9.827897e-64 | -8.615850e-47 |
| Msa0527900 | Msa0564490 | 0.815246 | 1.019805e-51 | -8.615850e-47 |
| Msa0528970 | Msa0564490 | 0.806681 | 7.309648e-50 | -8.615850e-47 |
| Msa0543900 | Msa0564490 | 0.809902 | 1.503736e-50 | -8.615850e-47 |
| Msa0549740 | Msa0564490 | 0.821591 | 3.722293e-53 | -8.615850e-47 |
| Msa0562650 | Msa0564490 | 0.804479 | 2.118381e-49 | -8.615850e-47 |
| Msa0563140 | Msa0564490 | 0.870945 | 9.939821e-67 | -8.615850e-47 |
| Msa0564490 | Msa0576990 | -0.802505 | 5.433709e-49 | -8.615850e-47 |
| Msa0564490 | Msa0586150 | 0.810909 | 9.115132e-51 | -8.615850e-47 |
| Msa0564490 | Msa0599770 | 0.802770 | 4.792156e-49 | -8.615850e-47 |
| Msa0564490 | Msa0600820 | 0.816605 | 5.074749e-52 | -8.615850e-47 |
| Msa0564490 | Msa0616560 | -0.830510 | 2.819748e-55 | -8.615850e-47 |
| Msa0564490 | Msa0617560 | -0.828243 | 1.001831e-54 | -8.615850e-47 |
| Msa0564490 | Msa0629890 | 0.826196 | 3.098300e-54 | -8.615850e-47 |
| Msa0564490 | Msa0630060 | 0.817718 | 2.851227e-52 | -8.615850e-47 |
| Msa0564490 | Msa0635470 | 0.821836 | 3.265960e-53 | -8.615850e-47 |
| Msa0564490 | Msa0640380 | 0.819566 | 1.086025e-52 | -8.615850e-47 |
| Msa0564490 | Msa0641020 | 0.820965 | 5.189358e-53 | -8.615850e-47 |
| Msa0564490 | Msa0655990 | -0.823306 | 1.486791e-53 | -8.615850e-47 |
| Msa0564490 | Msa0663330 | 0.831933 | 1.260468e-55 | -8.615850e-47 |
| Msa0564490 | Msa0664020 | 0.833688 | 4.620295e-56 | -8.615850e-47 |
| Msa0564490 | Msa0679560 | 0.802167 | 6.377731e-49 | -8.615850e-47 |
| Msa0564490 | Msa0688550 | 0.813060 | 3.098383e-51 | -8.615850e-47 |
| Msa0564490 | Msa0699920 | -0.813652 | 2.296562e-51 | -8.615850e-47 |
| Msa0564490 | Msa0716740 | -0.809482 | 1.851633e-50 | -8.615850e-47 |
| Msa0564490 | Msa0722930 | 0.856925 | 2.313518e-62 | -8.615850e-47 |
| Msa0564490 | Msa0723140 | 0.860996 | 1.398471e-63 | -8.615850e-47 |
| Msa0564490 | Msa0752580 | 0.815929 | 7.186081e-52 | -8.615850e-47 |
| Msa0564490 | Msa0754500 | 0.804942 | 1.695447e-49 | -8.615850e-47 |
| Msa0564490 | Msa0799290 | -0.800552 | 1.365867e-48 | -8.615850e-47 |
| Msa0564490 | Msa0843280 | 0.822778 | 1.974111e-53 | -8.615850e-47 |
| Msa0564490 | Msa0883410 | 0.813742 | 2.194772e-51 | -8.615850e-47 |
| Msa0564490 | Msa0883660 | 0.819906 | 9.078769e-53 | -8.615850e-47 |
| Msa0564490 | Msa0883670 | 0.806384 | 8.445981e-50 | -8.615850e-47 |
| Msa0564490 | Msa0887000 | 0.807847 | 4.138991e-50 | -8.615850e-47 |
| Msa0564490 | Msa0906280 | 0.807492 | 4.922162e-50 | -8.615850e-47 |
| Msa0564490 | Msa0912160 | 0.808048 | 3.749905e-50 | -8.615850e-47 |
| Msa0564490 | Msa0951720 | 0.828206 | 1.022623e-54 | -8.615850e-47 |
| Msa0564490 | Msa0961420 | -0.832738 | 7.963321e-56 | -8.615850e-47 |
| Msa0564490 | Msa0964680 | 0.806933 | 6.466777e-50 | -8.615850e-47 |
| Msa0564490 | Msa0970050 | 0.805259 | 1.455108e-49 | -8.615850e-47 |
| Msa0564490 | Msa0988500 | 0.830122 | 3.507121e-55 | -8.615850e-47 |
| Msa0564490 | Msa1008340 | 0.825569 | 4.363868e-54 | -8.615850e-47 |
| Msa0564490 | Msa1049950 | 0.828788 | 7.398108e-55 | -8.615850e-47 |
| Msa0564490 | Msa1080790 | 0.818625 | 1.777525e-52 | -8.615850e-47 |
| Msa0564490 | Msa1081710 | 0.811326 | 7.405012e-51 | -8.615850e-47 |
| Msa0564490 | Msa1087530 | 0.807481 | 4.949983e-50 | -8.615850e-47 |
| Msa0564490 | Msa1108780 | 0.821733 | 3.450862e-53 | -8.615850e-47 |
| Msa0564490 | Msa1113210 | 0.807589 | 4.695665e-50 | -8.615850e-47 |
| Msa0564490 | Msa1113280 | 0.839767 | 1.301212e-57 | -8.615850e-47 |
| Msa0564490 | Msa1118930 | 0.820617 | 6.241076e-53 | -8.615850e-47 |
| Msa0564490 | Msa1135660 | 0.800278 | 1.553820e-48 | -8.615850e-47 |
| Msa0564490 | Msa1139240 | 0.816847 | 4.477839e-52 | -8.615850e-47 |
| Msa0564490 | Msa1207670 | -0.820334 | 7.244428e-53 | -8.615850e-47 |
| Msa0564490 | Msa1212740 | 0.812831 | 3.478454e-51 | -8.615850e-47 |
| Msa0564490 | Msa1227060 | 0.832504 | 9.103546e-56 | -8.615850e-47 |
| Msa0564490 | Msa1237260 | 0.822171 | 2.732353e-53 | -8.615850e-47 |
| Msa0564490 | Msa1252070 | 0.820443 | 6.842546e-53 | -8.615850e-47 |
| Msa0564490 | Msa1257870 | -0.810267 | 1.254792e-50 | -8.615850e-47 |
| Msa0564490 | Msa1312680 | 0.815227 | 1.029788e-51 | -8.615850e-47 |
| Msa0564490 | Msa1317710 | 0.807496 | 4.913763e-50 | -8.615850e-47 |
| Msa0564490 | Msa1328600 | 0.802064 | 6.698116e-49 | -8.615850e-47 |
| Msa0564490 | Msa1405400 | 0.807630 | 4.602625e-50 | -8.615850e-47 |
| Msa0564490 | Msa1428440 | 0.823496 | 1.342857e-53 | -8.615850e-47 |
| Msa0564490 | Msa1445250 | 0.818254 | 2.157280e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564490 | MtrunA17_Chr8g0378531 | 88.221 | 416 | 35 | 4 | 1 | 402 | 73 | 488 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564490 | AT1G55280.1 | 45.135 | 370 | 175 | 10 | 39 | 395 | 35 | 389 | 7.40e-97 | 295 |
| Msa0564490 | AT1G55280.2 | 45.135 | 370 | 175 | 10 | 39 | 395 | 80 | 434 | 3.30e-96 | 295 |
Find 101 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAGACTTGAGGCTATT+TGG | 0.152892 | 4_1:-65153789 | Msa0564490:CDS |
| AAAATTAGTATCAGAGAATT+TGG | 0.170887 | 4_1:+65155132 | None:intergenic |
| ATAAATCCAAATCTTTATTC+AGG | 0.239984 | 4_1:-65154017 | Msa0564490:CDS |
| GTAAGTGTGGCATTGGCTTT+AGG | 0.249935 | 4_1:-65152403 | Msa0564490:CDS |
| TGCAATTCAATTCGTACGTT+TGG | 0.276595 | 4_1:-65155318 | None:intergenic |
| CTTGACCCTGAATAAAGATT+TGG | 0.283207 | 4_1:+65154011 | None:intergenic |
| AACTTCTGCCCAAGTGTTAT+AGG | 0.288096 | 4_1:+65152250 | None:intergenic |
| ATTCCAACTATGATATCTTT+TGG | 0.298685 | 4_1:+65152322 | None:intergenic |
| ATTCATCAACAGAACCTCTT+TGG | 0.299534 | 4_1:+65153833 | None:intergenic |
| GCAATTCAATTCGTACGTTT+GGG | 0.308288 | 4_1:-65155317 | None:intergenic |
| CACTGGTATTCTCTTCAATA+TGG | 0.322369 | 4_1:+65153903 | None:intergenic |
| CCTTTGAGATGACAGGAGTT+TGG | 0.322539 | 4_1:+65152684 | None:intergenic |
| TGCAAGACTTGAGGCTATTT+GGG | 0.323891 | 4_1:-65153788 | Msa0564490:CDS |
| TAAGTGTGGCATTGGCTTTA+GGG | 0.327988 | 4_1:-65152402 | Msa0564490:CDS |
| GCTTTCTTTGTTGGTGGGAT+TGG | 0.336342 | 4_1:-65152544 | Msa0564490:CDS |
| ATTTGGATTTATCCTCCTTA+AGG | 0.338464 | 4_1:+65154028 | None:intergenic |
| ACCGATCATTCTACAGAATC+AGG | 0.346191 | 4_1:-65153871 | Msa0564490:CDS |
| TATTTGGGTCGGTGTTGATT+CGG | 0.359187 | 4_1:-65153773 | Msa0564490:CDS |
| ATTTGGGTCGGTGTTGATTC+GGG | 0.364635 | 4_1:-65153772 | Msa0564490:intron |
| ACCGGGTTCGCTTTCTTTGT+TGG | 0.369998 | 4_1:-65152553 | Msa0564490:CDS |
| AAATACTTTATCTTCCCTTA+AGG | 0.370949 | 4_1:-65154043 | Msa0564490:CDS |
| TATGGTGGTACCTCTTCTTC+TGG | 0.372818 | 4_1:+65152863 | None:intergenic |
| ACCTCTTCTTCTGGCAATGA+TGG | 0.373177 | 4_1:+65152872 | None:intergenic |
| GGAACTGATGCATTGTTTAG+AGG | 0.377564 | 4_1:-65152442 | Msa0564490:CDS |
| TTTGGATTTATCCTCCTTAA+GGG | 0.390006 | 4_1:+65154029 | None:intergenic |
| TTGGTTACCAGCAACTTATA+TGG | 0.399396 | 4_1:-65153988 | Msa0564490:intron |
| CTTTCTTCCTTTGAGATGAC+AGG | 0.409228 | 4_1:+65152677 | None:intergenic |
| CCAATACGACTTTCGAATTG+AGG | 0.415792 | 4_1:-65152831 | Msa0564490:CDS |
| TTCTTTGTTGGTGGGATTGG+AGG | 0.421123 | 4_1:-65152541 | Msa0564490:CDS |
| AGGTATGTGGACGGATTGCC+AGG | 0.423984 | 4_1:-65152493 | Msa0564490:CDS |
| CTATGCTTGATAGACGTAGA+TGG | 0.426250 | 4_1:-65153931 | Msa0564490:CDS |
| CCTCAATTCGAAAGTCGTAT+TGG | 0.435999 | 4_1:+65152831 | None:intergenic |
| CTCTCAGCTGGTGAAAATAC+CGG | 0.436324 | 4_1:-65152571 | Msa0564490:CDS |
| TTCAGAATCTATGACTGTTA+AGG | 0.438711 | 4_1:+65152901 | None:intergenic |
| TGCATTGTTTAGAGGATTGA+AGG | 0.450526 | 4_1:-65152434 | Msa0564490:CDS |
| GAACTTGAAATTCTTCTAAG+AGG | 0.453376 | 4_1:+65155181 | None:intergenic |
| TTCCTCTAAGGTCAGGTCAA+TGG | 0.462389 | 4_1:-65152940 | Msa0564490:intron |
| TCGAGCTGAGTCACAAGGTT+AGG | 0.465662 | 4_1:+65152761 | None:intergenic |
| ACACCAAAAGATATCATAGT+TGG | 0.465828 | 4_1:-65152325 | Msa0564490:CDS |
| AATATAAGTGACTTCAATGC+TGG | 0.469726 | 4_1:-65153961 | Msa0564490:CDS |
| TGGCAAAACAACTGATGGTC+TGG | 0.469882 | 4_1:+65154104 | None:intergenic |
| GGTTCGCTTTCTTTGTTGGT+GGG | 0.473259 | 4_1:-65152549 | Msa0564490:CDS |
| GATATCATAGTTGGAATGAT+GGG | 0.476033 | 4_1:-65152316 | Msa0564490:CDS |
| ATTCGTACGTTTGGGGAAGA+AGG | 0.478599 | 4_1:-65155309 | Msa0564490:five_prime_UTR |
| TCGTATTGGAAGCCGGTGTA+TGG | 0.480131 | 4_1:+65152845 | None:intergenic |
| TCCTATAGTAAGTGTGGCAT+TGG | 0.484208 | 4_1:-65152410 | Msa0564490:CDS |
| AGATATCATAGTTGGAATGA+TGG | 0.485907 | 4_1:-65152317 | Msa0564490:CDS |
| CGAATTGAGGATGCATTGCT+TGG | 0.486399 | 4_1:-65152818 | Msa0564490:CDS |
| GCATTTAAGCCTATAACACT+TGG | 0.489741 | 4_1:-65152259 | Msa0564490:CDS |
| TAAATCCAAATCTTTATTCA+GGG | 0.498208 | 4_1:-65154016 | Msa0564490:CDS |
| TGTATCTGCTATTGTTGCAG+AGG | 0.499344 | 4_1:-65152513 | Msa0564490:CDS |
| GGGTTCGCTTTCTTTGTTGG+TGG | 0.499672 | 4_1:-65152550 | Msa0564490:CDS |
| GCCAATGCCACACTTACTAT+AGG | 0.501445 | 4_1:+65152409 | None:intergenic |
| AACTTGAAATTCTTCTAAGA+GGG | 0.502586 | 4_1:+65155182 | None:intergenic |
| TCAATTGCTTCCCTCTCAGC+TGG | 0.512231 | 4_1:-65152583 | Msa0564490:CDS |
| ATGTAAAGTTTCTGTGGTGT+TGG | 0.512933 | 4_1:-65152284 | Msa0564490:CDS |
| CCCTGATTCTGTAGAATGAT+CGG | 0.525561 | 4_1:+65153870 | None:intergenic |
| ACCAACAAAGAAAGCGAACC+CGG | 0.525652 | 4_1:+65152552 | None:intergenic |
| TATACTTTCACGTCAGAGGC+TGG | 0.531703 | 4_1:+65154084 | None:intergenic |
| GATATACTTCATTTCCAAAG+AGG | 0.531996 | 4_1:-65153847 | Msa0564490:CDS |
| AAGGTTCAGAGCTATAGCTA+TGG | 0.534181 | 4_1:-65155290 | Msa0564490:exon |
| ACACTTGGGCAGAAGTTACC+TGG | 0.542605 | 4_1:-65152244 | Msa0564490:CDS |
| TAACAGTCATAGATTCTGAA+TGG | 0.544345 | 4_1:-65152898 | Msa0564490:CDS |
| TACTTTATCTTCCCTTAAGG+AGG | 0.546271 | 4_1:-65154040 | Msa0564490:CDS |
| TTTGTAGTGAAGTATAGCTC+AGG | 0.553123 | 4_1:-65152370 | Msa0564490:CDS |
| TTGTGAATGAGTGAAGTTGA+AGG | 0.557614 | 4_1:+65155241 | None:intergenic |
| AGACTTGAGGCTATTTGGGT+CGG | 0.558381 | 4_1:-65153784 | Msa0564490:CDS |
| TCTTGCATGTAAAGTTTCTG+TGG | 0.561151 | 4_1:-65152290 | Msa0564490:CDS |
| GAAGGAATCATAGTCTTCAC+AGG | 0.561554 | 4_1:+65155259 | None:intergenic |
| ACCATCATTGCCAGAAGAAG+AGG | 0.565997 | 4_1:-65152873 | Msa0564490:CDS |
| GAGGCTGGCAAAACAACTGA+TGG | 0.567913 | 4_1:+65154099 | None:intergenic |
| TGATCGGTCATCAAACTCAC+TGG | 0.570085 | 4_1:+65153886 | None:intergenic |
| GCTATTGTTGCAGAGGTATG+TGG | 0.570298 | 4_1:-65152506 | Msa0564490:CDS |
| GCATTGTTTAGAGGATTGAA+GGG | 0.571930 | 4_1:-65152433 | Msa0564490:CDS |
| AGGTCAGGTCAATGGAGACT+AGG | 0.573348 | 4_1:-65152932 | Msa0564490:intron |
| ACCTTGTGACTCAGCTCGAA+GGG | 0.573530 | 4_1:-65152757 | Msa0564490:CDS |
| TCGAAAGTCGTATTGGAAGC+CGG | 0.576014 | 4_1:+65152838 | None:intergenic |
| CATCTCAAAGGAAGAAAGCA+TGG | 0.576259 | 4_1:-65152672 | Msa0564490:CDS |
| CCGATCATTCTACAGAATCA+GGG | 0.579731 | 4_1:-65153870 | Msa0564490:CDS |
| CCAAACTCCTGTCATCTCAA+AGG | 0.580577 | 4_1:-65152684 | Msa0564490:CDS |
| AACCTTGTGACTCAGCTCGA+AGG | 0.583632 | 4_1:-65152758 | Msa0564490:CDS |
| AGGAACTGATCTATCCATGT+TGG | 0.588578 | 4_1:-65152792 | Msa0564490:CDS |
| TGTGTATACTTTCACGTCAG+AGG | 0.589092 | 4_1:+65154080 | None:intergenic |
| CATCTACGTCTATCAAGCAT+AGG | 0.594306 | 4_1:+65153932 | None:intergenic |
| TGTGACTCAGCTCGAAGGGA+CGG | 0.596007 | 4_1:-65152753 | Msa0564490:CDS |
| TCTCAGCTGGTGAAAATACC+GGG | 0.602142 | 4_1:-65152570 | Msa0564490:CDS |
| TATTGGAAGCCGGTGTATGG+TGG | 0.603889 | 4_1:+65152848 | None:intergenic |
| ACTTGAAATTCTTCTAAGAG+GGG | 0.603938 | 4_1:+65155183 | None:intergenic |
| AAATTAATCACAAGCAACAA+AGG | 0.606917 | 4_1:-65152466 | Msa0564490:CDS |
| GAGGATGCATTGCTTGGTGA+AGG | 0.609971 | 4_1:-65152812 | Msa0564490:CDS |
| CATTTAAGCCTATAACACTT+GGG | 0.611508 | 4_1:-65152258 | Msa0564490:CDS |
| GAAGGGTCCTATAGTAAGTG+TGG | 0.617641 | 4_1:-65152416 | Msa0564490:CDS |
| TCCCTTCGAGCTGAGTCACA+AGG | 0.619102 | 4_1:+65152756 | None:intergenic |
| CGATCATTCTACAGAATCAG+GGG | 0.632486 | 4_1:-65153869 | Msa0564490:CDS |
| GTGTATAATTACATGTCACC+AGG | 0.632874 | 4_1:+65152226 | None:intergenic |
| CAATTCAATTCGTACGTTTG+GGG | 0.653772 | 4_1:-65155316 | None:intergenic |
| GTTAGGTCTTAATTCCAACA+TGG | 0.676496 | 4_1:+65152778 | None:intergenic |
| TTAATCACAAGCAACAAAGG+AGG | 0.678453 | 4_1:-65152463 | Msa0564490:CDS |
| TTGTTGCAGAGGTATGTGGA+CGG | 0.680400 | 4_1:-65152502 | Msa0564490:CDS |
| GAAGAGGTACCACCATACAC+CGG | 0.692574 | 4_1:-65152857 | Msa0564490:CDS |
| CTCAAAGGAAGAAAGCATGG+AGG | 0.740445 | 4_1:-65152669 | Msa0564490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATGATTCAAAATTT+TGG | - | chr4_1:65152605-65152624 | Msa0564490:CDS | 10.0% |
| !!! | AAAAATAAAAGTACTTTATT+TGG | + | chr4_1:65153309-65153328 | None:intergenic | 10.0% |
| !!! | ATTCTAGTATATTTTTTTTT+TGG | - | chr4_1:65153801-65153820 | Msa0564490:CDS | 10.0% |
| !!! | AATATAGAAATTTAAAGTTT+TGG | + | chr4_1:65154491-65154510 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTGTTAAAGTAT+TGG | - | chr4_1:65152799-65152818 | Msa0564490:CDS | 15.0% |
| !! | TTTCAAAAATAAAATATGTG+AGG | + | chr4_1:65152829-65152848 | None:intergenic | 15.0% |
| !! | AAAATTAGTATCAGAGAATT+TGG | + | chr4_1:65152415-65152434 | None:intergenic | 20.0% |
| !! | TAATGAAGAAATTGAAAAGT+GGG | + | chr4_1:65152447-65152466 | None:intergenic | 20.0% |
| !! | TTAATGAAGAAATTGAAAAG+TGG | + | chr4_1:65152448-65152467 | None:intergenic | 20.0% |
| !!! | TTTAACTGTTCTCTTTATTT+TGG | - | chr4_1:65152515-65152534 | Msa0564490:CDS | 20.0% |
| !!! | TTAACTGTTCTCTTTATTTT+GGG | - | chr4_1:65152516-65152535 | Msa0564490:CDS | 20.0% |
| !!! | TATATGATTCAAAATTTTGG+AGG | - | chr4_1:65152608-65152627 | Msa0564490:CDS | 20.0% |
| !!! | AATTTTGGAGGTATTTTTAT+TGG | - | chr4_1:65152620-65152639 | Msa0564490:CDS | 20.0% |
| !! | GTATATTAAATATTTCAGTG+TGG | - | chr4_1:65152904-65152923 | Msa0564490:CDS | 20.0% |
| !!! | AAATTGTAACTTTTGTAACA+CGG | + | chr4_1:65153079-65153098 | None:intergenic | 20.0% |
| !!! | TTTAGAGTTTGAAAAGATAA+CGG | - | chr4_1:65153096-65153115 | Msa0564490:intron | 20.0% |
| !!! | TACATATAACAAATGACTTT+TGG | + | chr4_1:65153340-65153359 | None:intergenic | 20.0% |
| !! | ATAAATCCAAATCTTTATTC+AGG | - | chr4_1:65153527-65153546 | Msa0564490:intron | 20.0% |
| !! | TAAATCCAAATCTTTATTCA+GGG | - | chr4_1:65153528-65153547 | Msa0564490:intron | 20.0% |
| !! | TAACATTTCTGTTTAAAAAC+TGG | + | chr4_1:65153953-65153972 | None:intergenic | 20.0% |
| !! | AACTTTCTAAATTGTTAACA+GGG | - | chr4_1:65154006-65154025 | Msa0564490:intron | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | - | chr4_1:65154057-65154076 | Msa0564490:CDS | 20.0% |
| !! | ATATTATTAACCATGATTTC+AGG | + | chr4_1:65154183-65154202 | None:intergenic | 20.0% |
| !! | GTTAATAATATTCGAATTCA+TGG | - | chr4_1:65154192-65154211 | Msa0564490:intron | 20.0% |
| !!! | ATAGAAATTTAAAGTTTTGG+AGG | + | chr4_1:65154488-65154507 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGAACAAACTTAT+AGG | + | chr4_1:65154819-65154838 | None:intergenic | 20.0% |
| !! | AACTTGAAATTCTTCTAAGA+GGG | + | chr4_1:65152365-65152384 | None:intergenic | 25.0% |
| !! | TTCTCTGATACTAATTTTCA+AGG | - | chr4_1:65152417-65152436 | Msa0564490:CDS | 25.0% |
| ! | AATGAAGAAATTGAAAAGTG+GGG | + | chr4_1:65152446-65152465 | None:intergenic | 25.0% |
| !! | AATGTTTAGCTTCACTTAAA+TGG | - | chr4_1:65152490-65152509 | Msa0564490:CDS | 25.0% |
| ! | ATTTGATGTTTGCCTATATA+TGG | - | chr4_1:65152725-65152744 | Msa0564490:intron | 25.0% |
| ! | TCATCATATATGCCATATAT+AGG | + | chr4_1:65152740-65152759 | None:intergenic | 25.0% |
| ! | TGTTTGTAGTTATTATTGTC+AGG | - | chr4_1:65152870-65152889 | Msa0564490:CDS | 25.0% |
| ! | TATTTAATATACCACTTGCT+AGG | + | chr4_1:65152896-65152915 | None:intergenic | 25.0% |
| ! | GAGTACTTAATGATTATAGT+TGG | - | chr4_1:65152928-65152947 | Msa0564490:CDS | 25.0% |
| !!! | TGATTATAGTTGGTTAGTTT+TGG | - | chr4_1:65152938-65152957 | Msa0564490:intron | 25.0% |
| ! | AAATACTTTATCTTCCCTTA+AGG | - | chr4_1:65153501-65153520 | Msa0564490:intron | 25.0% |
| !!! | TGTTGATGAATTCATTTTTG+AGG | - | chr4_1:65153723-65153742 | Msa0564490:intron | 25.0% |
| !!! | GTTGATGAATTCATTTTTGA+GGG | - | chr4_1:65153724-65153743 | Msa0564490:intron | 25.0% |
| !! | AAAGACAGATGTTGATTAAA+GGG | + | chr4_1:65153875-65153894 | None:intergenic | 25.0% |
| ! | AAATTGTATTTCCTGACATT+TGG | - | chr4_1:65153919-65153938 | Msa0564490:CDS | 25.0% |
| ! | CAACTTTCTAAATTGTTAAC+AGG | - | chr4_1:65154005-65154024 | Msa0564490:intron | 25.0% |
| ! | GTTAATCACGTTTAAATTTG+TGG | + | chr4_1:65154120-65154139 | None:intergenic | 25.0% |
| ! | ATTTGAACACTTGAAAATCA+AGG | + | chr4_1:65154142-65154161 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTACATATAGT+TGG | - | chr4_1:65154153-65154172 | Msa0564490:intron | 25.0% |
| ! | ATAATATTCGAATTCATGGT+TGG | - | chr4_1:65154196-65154215 | Msa0564490:intron | 25.0% |
| !! | TGTTGTTTGAACATCAATTT+GGG | + | chr4_1:65154345-65154364 | None:intergenic | 25.0% |
| !! | ATGTTGTTTGAACATCAATT+TGG | + | chr4_1:65154346-65154365 | None:intergenic | 25.0% |
| !! | TGATGTTCAAACAACATTTT+TGG | - | chr4_1:65154349-65154368 | Msa0564490:intron | 25.0% |
| ! | GAAGCTTGAAAAATTAATGT+TGG | - | chr4_1:65154540-65154559 | Msa0564490:intron | 25.0% |
| ! | AAATTAATCACAAGCAACAA+AGG | - | chr4_1:65155078-65155097 | Msa0564490:intron | 25.0% |
| !! | ATTCCAACTATGATATCTTT+TGG | + | chr4_1:65155225-65155244 | None:intergenic | 25.0% |
| ! | ACTTGAAATTCTTCTAAGAG+GGG | + | chr4_1:65152364-65152383 | None:intergenic | 30.0% |
| GAACTTGAAATTCTTCTAAG+AGG | + | chr4_1:65152366-65152385 | None:intergenic | 30.0% | |
| !!! | TTGGAGGTATTTTTATTGGA+AGG | - | chr4_1:65152624-65152643 | Msa0564490:CDS | 30.0% |
| !! | AGGAAGCTTTTTAAGCAATT+TGG | - | chr4_1:65152644-65152663 | Msa0564490:CDS | 30.0% |
| !! | GGAAGCTTTTTAAGCAATTT+GGG | - | chr4_1:65152645-65152664 | Msa0564490:CDS | 30.0% |
| ATATAGGCAAACATCAAATC+AGG | + | chr4_1:65152724-65152743 | None:intergenic | 30.0% | |
| ! | CAAACAACTTTGAAAAGAGT+AGG | + | chr4_1:65152856-65152875 | None:intergenic | 30.0% |
| AAGACCATGCTAATATAAAC+CGG | + | chr4_1:65153234-65153253 | None:intergenic | 30.0% | |
| AATATTTACTCCAAGAAGCA+TGG | + | chr4_1:65153281-65153300 | None:intergenic | 30.0% | |
| ! | GCTTCTTGGAGTAAATATTT+TGG | - | chr4_1:65153282-65153301 | Msa0564490:intron | 30.0% |
| TTTGGATTTATCCTCCTTAA+GGG | + | chr4_1:65153518-65153537 | None:intergenic | 30.0% | |
| ATTTGGATTTATCCTCCTTA+AGG | + | chr4_1:65153519-65153538 | None:intergenic | 30.0% | |
| AATATAAGTGACTTCAATGC+TGG | - | chr4_1:65153583-65153602 | Msa0564490:intron | 30.0% | |
| GATATACTTCATTTCCAAAG+AGG | - | chr4_1:65153697-65153716 | Msa0564490:intron | 30.0% | |
| TAAAGGGACTTCAAAATTGA+AGG | + | chr4_1:65153859-65153878 | None:intergenic | 30.0% | |
| ! | GAAAGACAGATGTTGATTAA+AGG | + | chr4_1:65153876-65153895 | None:intergenic | 30.0% |
| ACAGCACTTCAAAAAATTTG+AGG | + | chr4_1:65153898-65153917 | None:intergenic | 30.0% | |
| !! | GTTAAAAGAAGCGTTACATT+TGG | - | chr4_1:65154040-65154059 | Msa0564490:CDS | 30.0% |
| ! | ATATATGATGGAATCCTAGT+GGG | + | chr4_1:65154424-65154443 | None:intergenic | 30.0% |
| ! | AATATATGATGGAATCCTAG+TGG | + | chr4_1:65154425-65154444 | None:intergenic | 30.0% |
| TTCAGAATCTATGACTGTTA+AGG | + | chr4_1:65154646-65154665 | None:intergenic | 30.0% | |
| TAACAGTCATAGATTCTGAA+TGG | - | chr4_1:65154646-65154665 | Msa0564490:intron | 30.0% | |
| ! | CTTGTGATTAATTTTGAACC+TGG | + | chr4_1:65155072-65155091 | None:intergenic | 30.0% |
| ACACCAAAAGATATCATAGT+TGG | - | chr4_1:65155219-65155238 | Msa0564490:CDS | 30.0% | |
| AGATATCATAGTTGGAATGA+TGG | - | chr4_1:65155227-65155246 | Msa0564490:CDS | 30.0% | |
| GATATCATAGTTGGAATGAT+GGG | - | chr4_1:65155228-65155247 | Msa0564490:CDS | 30.0% | |
| CATTTAAGCCTATAACACTT+GGG | - | chr4_1:65155286-65155305 | Msa0564490:exon | 30.0% | |
| TTGTGAATGAGTGAAGTTGA+AGG | + | chr4_1:65152306-65152325 | None:intergenic | 35.0% | |
| TTTGGGAGTAATTTACAAGC+TGG | - | chr4_1:65152662-65152681 | Msa0564490:CDS | 35.0% | |
| TTGTCAAATCATGGCTGATT+TGG | - | chr4_1:65152685-65152704 | Msa0564490:CDS | 35.0% | |
| TACTGAGTACATGTTTGGAT+TGG | + | chr4_1:65153150-65153169 | None:intergenic | 35.0% | |
| !! | CAAAGTACTGAGTACATGTT+TGG | + | chr4_1:65153155-65153174 | None:intergenic | 35.0% |
| CAAACATGTACTCAGTACTT+TGG | - | chr4_1:65153153-65153172 | Msa0564490:intron | 35.0% | |
| GGTTTATATTAGCATGGTCT+TGG | - | chr4_1:65153233-65153252 | Msa0564490:intron | 35.0% | |
| TTAATCAGTTCCATGCTTCT+TGG | - | chr4_1:65153268-65153287 | Msa0564490:intron | 35.0% | |
| TATGTAATCAGTCTCATGTC+TGG | - | chr4_1:65153354-65153373 | Msa0564490:intron | 35.0% | |
| ATGAATTATCGACACAAGCA+CGG | + | chr4_1:65153383-65153402 | None:intergenic | 35.0% | |
| GTCGATAATTCATAGCTAAC+TGG | - | chr4_1:65153390-65153409 | Msa0564490:intron | 35.0% | |
| ! | GGTATAACTCTGAAAATCTG+TGG | + | chr4_1:65153422-65153441 | None:intergenic | 35.0% |
| TACTTTATCTTCCCTTAAGG+AGG | - | chr4_1:65153504-65153523 | Msa0564490:intron | 35.0% | |
| CTTGACCCTGAATAAAGATT+TGG | + | chr4_1:65153536-65153555 | None:intergenic | 35.0% | |
| ATCTTTATTCAGGGTCAAGT+TGG | - | chr4_1:65153537-65153556 | Msa0564490:intron | 35.0% | |
| TTGGTTACCAGCAACTTATA+TGG | - | chr4_1:65153556-65153575 | Msa0564490:intron | 35.0% | |
| ATTTGAGCCATATAAGTTGC+TGG | + | chr4_1:65153566-65153585 | None:intergenic | 35.0% | |
| CACTGGTATTCTCTTCAATA+TGG | + | chr4_1:65153644-65153663 | None:intergenic | 35.0% | |
| ATTCATCAACAGAACCTCTT+TGG | + | chr4_1:65153714-65153733 | None:intergenic | 35.0% | |
| TCCAAAAATTGCAAGACTTG+AGG | - | chr4_1:65153747-65153766 | Msa0564490:intron | 35.0% | |
| GACTTCAAAATTGAAGGTCA+AGG | + | chr4_1:65153853-65153872 | None:intergenic | 35.0% | |
| GTAGTTCAATGAGTAGTTAG+TGG | + | chr4_1:65154266-65154285 | None:intergenic | 35.0% | |
| AAATGACATTGATATGCCTC+TGG | + | chr4_1:65154399-65154418 | None:intergenic | 35.0% | |
| ! | TATATGATGGAATCCTAGTG+GGG | + | chr4_1:65154423-65154442 | None:intergenic | 35.0% |
| TTGGGACAGCTAATATATGA+TGG | + | chr4_1:65154436-65154455 | None:intergenic | 35.0% | |
| TTGTCACTGCATCAAACATA+AGG | - | chr4_1:65154510-65154529 | Msa0564490:intron | 35.0% | |
| ATACTCTTCTTCTTCCTCTA+AGG | - | chr4_1:65154592-65154611 | Msa0564490:intron | 35.0% | |
| GTTAGGTCTTAATTCCAACA+TGG | + | chr4_1:65154769-65154788 | None:intergenic | 35.0% | |
| !! | GATGCTGTGCTGATATTTTT+CGG | - | chr4_1:65154934-65154953 | Msa0564490:intron | 35.0% |
| TTAATCACAAGCAACAAAGG+AGG | - | chr4_1:65155081-65155100 | Msa0564490:intron | 35.0% | |
| TGCATTGTTTAGAGGATTGA+AGG | - | chr4_1:65155110-65155129 | Msa0564490:intron | 35.0% | |
| GCATTGTTTAGAGGATTGAA+GGG | - | chr4_1:65155111-65155130 | Msa0564490:intron | 35.0% | |
| TTTGTAGTGAAGTATAGCTC+AGG | - | chr4_1:65155174-65155193 | Msa0564490:CDS | 35.0% | |
| TCTTGCATGTAAAGTTTCTG+TGG | - | chr4_1:65155254-65155273 | Msa0564490:CDS | 35.0% | |
| ATGTAAAGTTTCTGTGGTGT+TGG | - | chr4_1:65155260-65155279 | Msa0564490:CDS | 35.0% | |
| GCATTTAAGCCTATAACACT+TGG | - | chr4_1:65155285-65155304 | Msa0564490:exon | 35.0% | |
| AAGGTTCAGAGCTATAGCTA+TGG | - | chr4_1:65152254-65152273 | Msa0564490:CDS | 40.0% | |
| GAAGGAATCATAGTCTTCAC+AGG | + | chr4_1:65152288-65152307 | None:intergenic | 40.0% | |
| ACAAGCTGGTTGTCAAATCA+TGG | - | chr4_1:65152676-65152695 | Msa0564490:CDS | 40.0% | |
| ! | TTGAAAAGATAACGGTGCCA+CGG | - | chr4_1:65153104-65153123 | Msa0564490:intron | 40.0% |
| !! | GTTTGGATTGGCAATGTGTT+TGG | + | chr4_1:65153138-65153157 | None:intergenic | 40.0% |
| CATGCTAATATAAACCGGCT+AGG | + | chr4_1:65153229-65153248 | None:intergenic | 40.0% | |
| ! | CTAGCCGGTTTATATTAGCA+TGG | - | chr4_1:65153227-65153246 | Msa0564490:intron | 40.0% |
| ! | ATTAGCATGGTCTTGGTAGA+TGG | - | chr4_1:65153240-65153259 | Msa0564490:intron | 40.0% |
| TGTGTATACTTTCACGTCAG+AGG | + | chr4_1:65153467-65153486 | None:intergenic | 40.0% | |
| CATCTACGTCTATCAAGCAT+AGG | + | chr4_1:65153615-65153634 | None:intergenic | 40.0% | |
| CTATGCTTGATAGACGTAGA+TGG | - | chr4_1:65153613-65153632 | Msa0564490:intron | 40.0% | |
| ACCGATCATTCTACAGAATC+AGG | - | chr4_1:65153673-65153692 | Msa0564490:intron | 40.0% | |
| CCCTGATTCTGTAGAATGAT+CGG | + | chr4_1:65153677-65153696 | None:intergenic | 40.0% | |
| CCGATCATTCTACAGAATCA+GGG | - | chr4_1:65153674-65153693 | Msa0564490:intron | 40.0% | |
| CGATCATTCTACAGAATCAG+GGG | - | chr4_1:65153675-65153694 | Msa0564490:intron | 40.0% | |
| ! | GCCTCAAGTCTTGCAATTTT+TGG | + | chr4_1:65153751-65153770 | None:intergenic | 40.0% |
| TTGCAAGACTTGAGGCTATT+TGG | - | chr4_1:65153755-65153774 | Msa0564490:intron | 40.0% | |
| TGCAAGACTTGAGGCTATTT+GGG | - | chr4_1:65153756-65153775 | Msa0564490:intron | 40.0% | |
| !! | TATTTGGGTCGGTGTTGATT+CGG | - | chr4_1:65153771-65153790 | Msa0564490:intron | 40.0% |
| TGGAATGTGATCCAAATGTC+AGG | + | chr4_1:65153933-65153952 | None:intergenic | 40.0% | |
| AGTTGGAACACCTGAAATCA+TGG | - | chr4_1:65154170-65154189 | Msa0564490:intron | 40.0% | |
| ! | GGTTGGTTAAGCTCATTTGA+TGG | - | chr4_1:65154213-65154232 | Msa0564490:intron | 40.0% |
| GTTAGTGGTGAAGACAAGAT+CGG | + | chr4_1:65154251-65154270 | None:intergenic | 40.0% | |
| ! | ATATGATGGAATCCTAGTGG+GGG | + | chr4_1:65154422-65154441 | None:intergenic | 40.0% |
| CCTCAATTCGAAAGTCGTAT+TGG | + | chr4_1:65154716-65154735 | None:intergenic | 40.0% | |
| CCAATACGACTTTCGAATTG+AGG | - | chr4_1:65154713-65154732 | Msa0564490:intron | 40.0% | |
| AGGAACTGATCTATCCATGT+TGG | - | chr4_1:65154752-65154771 | Msa0564490:intron | 40.0% | |
| !! | CTTTCTTCCTTTGAGATGAC+AGG | + | chr4_1:65154870-65154889 | None:intergenic | 40.0% |
| CATCTCAAAGGAAGAAAGCA+TGG | - | chr4_1:65154872-65154891 | Msa0564490:intron | 40.0% | |
| TGTATCTGCTATTGTTGCAG+AGG | - | chr4_1:65155031-65155050 | Msa0564490:intron | 40.0% | |
| GGAACTGATGCATTGTTTAG+AGG | - | chr4_1:65155102-65155121 | Msa0564490:intron | 40.0% | |
| TCCTATAGTAAGTGTGGCAT+TGG | - | chr4_1:65155134-65155153 | Msa0564490:CDS | 40.0% | |
| !! | TAAGTGTGGCATTGGCTTTA+GGG | - | chr4_1:65155142-65155161 | Msa0564490:CDS | 40.0% |
| AACTTCTGCCCAAGTGTTAT+AGG | + | chr4_1:65155297-65155316 | None:intergenic | 40.0% | |
| ATTCGTACGTTTGGGGAAGA+AGG | - | chr4_1:65152235-65152254 | Msa0564490:CDS | 45.0% | |
| TTATTGTCAGGCCTAGCAAG+TGG | - | chr4_1:65152882-65152901 | Msa0564490:CDS | 45.0% | |
| !! | TGAAAAGATAACGGTGCCAC+GGG | - | chr4_1:65153105-65153124 | Msa0564490:intron | 45.0% |
| CTCAAAAGCTTGAACCTAGC+CGG | - | chr4_1:65153212-65153231 | Msa0564490:intron | 45.0% | |
| TGGCAAAACAACTGATGGTC+TGG | + | chr4_1:65153443-65153462 | None:intergenic | 45.0% | |
| TATACTTTCACGTCAGAGGC+TGG | + | chr4_1:65153463-65153482 | None:intergenic | 45.0% | |
| TGATCGGTCATCAAACTCAC+TGG | + | chr4_1:65153661-65153680 | None:intergenic | 45.0% | |
| AGACTTGAGGCTATTTGGGT+CGG | - | chr4_1:65153760-65153779 | Msa0564490:intron | 45.0% | |
| !! | ATTTGGGTCGGTGTTGATTC+GGG | - | chr4_1:65153772-65153791 | Msa0564490:intron | 45.0% |
| TGACATTGATATGCCTCTGG+TGG | + | chr4_1:65154396-65154415 | None:intergenic | 45.0% | |
| ! | TCAATGTCATTTCCCCCACT+AGG | - | chr4_1:65154407-65154426 | Msa0564490:intron | 45.0% |
| !! | CTTCTTCTTCCTCTAAGGTC+AGG | - | chr4_1:65154597-65154616 | Msa0564490:intron | 45.0% |
| !! | TTCCTCTAAGGTCAGGTCAA+TGG | - | chr4_1:65154604-65154623 | Msa0564490:intron | 45.0% |
| ACCATCATTGCCAGAAGAAG+AGG | - | chr4_1:65154671-65154690 | Msa0564490:intron | 45.0% | |
| ACCTCTTCTTCTGGCAATGA+TGG | + | chr4_1:65154675-65154694 | None:intergenic | 45.0% | |
| TATGGTGGTACCTCTTCTTC+TGG | + | chr4_1:65154684-65154703 | None:intergenic | 45.0% | |
| TCGAAAGTCGTATTGGAAGC+CGG | + | chr4_1:65154709-65154728 | None:intergenic | 45.0% | |
| CGAATTGAGGATGCATTGCT+TGG | - | chr4_1:65154726-65154745 | Msa0564490:intron | 45.0% | |
| !! | CCTTTGAGATGACAGGAGTT+TGG | + | chr4_1:65154863-65154882 | None:intergenic | 45.0% |
| CCAAACTCCTGTCATCTCAA+AGG | - | chr4_1:65154860-65154879 | Msa0564490:intron | 45.0% | |
| ! | CTCAAAGGAAGAAAGCATGG+AGG | - | chr4_1:65154875-65154894 | Msa0564490:intron | 45.0% |
| ! | GGTATTTTCACCAGCTGAGA+GGG | + | chr4_1:65154974-65154993 | None:intergenic | 45.0% |
| CTCTCAGCTGGTGAAAATAC+CGG | - | chr4_1:65154973-65154992 | Msa0564490:intron | 45.0% | |
| TCTCAGCTGGTGAAAATACC+GGG | - | chr4_1:65154974-65154993 | Msa0564490:intron | 45.0% | |
| ACCAACAAAGAAAGCGAACC+CGG | + | chr4_1:65154995-65155014 | None:intergenic | 45.0% | |
| GGTTCGCTTTCTTTGTTGGT+GGG | - | chr4_1:65154995-65155014 | Msa0564490:intron | 45.0% | |
| ! | GCTTTCTTTGTTGGTGGGAT+TGG | - | chr4_1:65155000-65155019 | Msa0564490:intron | 45.0% |
| ! | TTCTTTGTTGGTGGGATTGG+AGG | - | chr4_1:65155003-65155022 | Msa0564490:intron | 45.0% |
| ! | GCTATTGTTGCAGAGGTATG+TGG | - | chr4_1:65155038-65155057 | Msa0564490:intron | 45.0% |
| ! | TTGTTGCAGAGGTATGTGGA+CGG | - | chr4_1:65155042-65155061 | Msa0564490:intron | 45.0% |
| GAAGGGTCCTATAGTAAGTG+TGG | - | chr4_1:65155128-65155147 | Msa0564490:CDS | 45.0% | |
| GCCAATGCCACACTTACTAT+AGG | + | chr4_1:65155138-65155157 | None:intergenic | 45.0% | |
| !! | GTAAGTGTGGCATTGGCTTT+AGG | - | chr4_1:65155141-65155160 | Msa0564490:CDS | 45.0% |
| !! | AAATATAAATAATATATGTT+GGG | + | chr4_1:65154454-65154473 | None:intergenic | 5.0% |
| !! | AAAATATAAATAATATATGT+TGG | + | chr4_1:65154455-65154474 | None:intergenic | 5.0% |
| !! | GAAAAGATAACGGTGCCACG+GGG | - | chr4_1:65153106-65153125 | Msa0564490:intron | 50.0% |
| GAGGCTGGCAAAACAACTGA+TGG | + | chr4_1:65153448-65153467 | None:intergenic | 50.0% | |
| GCATTGTGCAATTCCACCAG+AGG | - | chr4_1:65154380-65154399 | Msa0564490:intron | 50.0% | |
| CTCCATTGACCTGACCTTAG+AGG | + | chr4_1:65154609-65154628 | None:intergenic | 50.0% | |
| AGGTCAGGTCAATGGAGACT+AGG | - | chr4_1:65154612-65154631 | Msa0564490:intron | 50.0% | |
| !! | GAAGAGGTACCACCATACAC+CGG | - | chr4_1:65154687-65154706 | Msa0564490:intron | 50.0% |
| TATTGGAAGCCGGTGTATGG+TGG | + | chr4_1:65154699-65154718 | None:intergenic | 50.0% | |
| TCGTATTGGAAGCCGGTGTA+TGG | + | chr4_1:65154702-65154721 | None:intergenic | 50.0% | |
| ! | GAGGATGCATTGCTTGGTGA+AGG | - | chr4_1:65154732-65154751 | Msa0564490:intron | 50.0% |
| TCGAGCTGAGTCACAAGGTT+AGG | + | chr4_1:65154786-65154805 | None:intergenic | 50.0% | |
| AACCTTGTGACTCAGCTCGA+AGG | - | chr4_1:65154786-65154805 | Msa0564490:intron | 50.0% | |
| ACCTTGTGACTCAGCTCGAA+GGG | - | chr4_1:65154787-65154806 | Msa0564490:intron | 50.0% | |
| TCAATTGCTTCCCTCTCAGC+TGG | - | chr4_1:65154961-65154980 | Msa0564490:intron | 50.0% | |
| ! | CGGTATTTTCACCAGCTGAG+AGG | + | chr4_1:65154975-65154994 | None:intergenic | 50.0% |
| ACCGGGTTCGCTTTCTTTGT+TGG | - | chr4_1:65154991-65155010 | Msa0564490:intron | 50.0% | |
| GGGTTCGCTTTCTTTGTTGG+TGG | - | chr4_1:65154994-65155013 | Msa0564490:intron | 50.0% | |
| ACACTTGGGCAGAAGTTACC+TGG | - | chr4_1:65155300-65155319 | Msa0564490:five_prime_UTR | 50.0% | |
| TGTGTTTGGCGAAATCCCCG+TGG | + | chr4_1:65153124-65153143 | None:intergenic | 55.0% | |
| TCCCTTCGAGCTGAGTCACA+AGG | + | chr4_1:65154791-65154810 | None:intergenic | 55.0% | |
| TGTGACTCAGCTCGAAGGGA+CGG | - | chr4_1:65154791-65154810 | Msa0564490:intron | 55.0% | |
| !! | AGGTATGTGGACGGATTGCC+AGG | - | chr4_1:65155051-65155070 | Msa0564490:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 65152234 | 65155332 | 65152234 | ID=Msa0564490;Name=Msa0564490 |
| chr4_1 | mRNA | 65152234 | 65155332 | 65152234 | ID=Msa0564490-mRNA-1;Parent=Msa0564490;Name=Msa0564490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=39|0.5|0.2|1|1|1|5|0|402 |
| chr4_1 | exon | 65152234 | 65152715 | 65152234 | ID=Msa0564490-mRNA-1:exon:20951;Parent=Msa0564490-mRNA-1 |
| chr4_1 | exon | 65152744 | 65152947 | 65152744 | ID=Msa0564490-mRNA-1:exon:20950;Parent=Msa0564490-mRNA-1 |
| chr4_1 | exon | 65153773 | 65153999 | 65153773 | ID=Msa0564490-mRNA-1:exon:20949;Parent=Msa0564490-mRNA-1 |
| chr4_1 | exon | 65154012 | 65154141 | 65154012 | ID=Msa0564490-mRNA-1:exon:20948;Parent=Msa0564490-mRNA-1 |
| chr4_1 | exon | 65155128 | 65155332 | 65155128 | ID=Msa0564490-mRNA-1:exon:20947;Parent=Msa0564490-mRNA-1 |
| chr4_1 | five_prime_UTR | 65155294 | 65155332 | 65155294 | ID=Msa0564490-mRNA-1:five_prime_utr;Parent=Msa0564490-mRNA-1 |
| chr4_1 | CDS | 65155128 | 65155293 | 65155128 | ID=Msa0564490-mRNA-1:cds;Parent=Msa0564490-mRNA-1 |
| chr4_1 | CDS | 65154012 | 65154141 | 65154012 | ID=Msa0564490-mRNA-1:cds;Parent=Msa0564490-mRNA-1 |
| chr4_1 | CDS | 65153773 | 65153999 | 65153773 | ID=Msa0564490-mRNA-1:cds;Parent=Msa0564490-mRNA-1 |
| chr4_1 | CDS | 65152744 | 65152947 | 65152744 | ID=Msa0564490-mRNA-1:cds;Parent=Msa0564490-mRNA-1 |
| chr4_1 | CDS | 65152234 | 65152715 | 65152234 | ID=Msa0564490-mRNA-1:cds;Parent=Msa0564490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
