Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527900 | XP_013454546.1 | 80.193 | 207 | 38 | 3 | 1 | 205 | 1 | 206 | 2.66e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527900 | sp|Q6K678|HDR1_ORYSJ | 76.296 | 135 | 29 | 1 | 64 | 198 | 72 | 203 | 3.48e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527900 | A0A072UGK4 | 80.193 | 207 | 38 | 3 | 1 | 205 | 1 | 206 | 1.27e-103 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0527900 | 0.822018 | 2.965285e-53 | -8.615850e-47 |
| Msa0093440 | Msa0527900 | 0.811029 | 8.586091e-51 | -8.615850e-47 |
| Msa0094940 | Msa0527900 | -0.825105 | 5.619099e-54 | -8.615850e-47 |
| Msa0128320 | Msa0527900 | -0.809007 | 2.340973e-50 | -8.615850e-47 |
| Msa0226620 | Msa0527900 | -0.812379 | 4.367315e-51 | -8.615850e-47 |
| Msa0467740 | Msa0527900 | -0.820587 | 6.340144e-53 | -8.615850e-47 |
| Msa0260270 | Msa0527900 | -0.811179 | 7.968470e-51 | -8.615850e-47 |
| Msa0304270 | Msa0527900 | -0.832035 | 1.189501e-55 | -8.615850e-47 |
| Msa0304310 | Msa0527900 | -0.833528 | 5.064951e-56 | -8.615850e-47 |
| Msa0334170 | Msa0527900 | 0.830991 | 2.149873e-55 | -8.615850e-47 |
| Msa0514130 | Msa0527900 | -0.819447 | 1.155904e-52 | -8.615850e-47 |
| Msa0527900 | Msa0544930 | 0.818346 | 2.056530e-52 | -8.615850e-47 |
| Msa0527900 | Msa0564490 | 0.815246 | 1.019805e-51 | -8.615850e-47 |
| Msa0527900 | Msa0586150 | 0.937008 | 6.951890e-98 | -8.615850e-47 |
| Msa0527900 | Msa0621190 | -0.816198 | 6.256755e-52 | -8.615850e-47 |
| Msa0527900 | Msa0641020 | 0.816852 | 4.467278e-52 | -8.615850e-47 |
| Msa0527900 | Msa0641030 | 0.806088 | 9.747059e-50 | -8.615850e-47 |
| Msa0527900 | Msa0663330 | 0.906316 | 1.690898e-80 | -8.615850e-47 |
| Msa0527900 | Msa0664020 | 0.913230 | 7.826062e-84 | -8.615850e-47 |
| Msa0527900 | Msa0679560 | 0.804078 | 2.567467e-49 | -8.615850e-47 |
| Msa0527900 | Msa0722930 | 0.821829 | 3.278470e-53 | -8.615850e-47 |
| Msa0527900 | Msa0723140 | 0.820800 | 5.662954e-53 | -8.615850e-47 |
| Msa0527900 | Msa1081710 | 0.803039 | 4.215276e-49 | -8.615850e-47 |
| Msa0527900 | Msa1108780 | 0.812885 | 3.385251e-51 | -8.615850e-47 |
| Msa0527900 | Msa1209560 | 0.801945 | 7.085812e-49 | -8.615850e-47 |
| Msa0527900 | Msa1246040 | 0.802608 | 5.175193e-49 | -8.615850e-47 |
| Msa0527900 | Msa1387750 | -0.805843 | 1.097572e-49 | -8.615850e-47 |
| Msa0527900 | Msa1445250 | 0.829226 | 5.794790e-55 | -8.615850e-47 |
| Msa0527900 | Msa1465890 | -0.810774 | 9.752857e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527900 | MtrunA17_Chr4g0001971 | 80.193 | 207 | 38 | 3 | 1 | 205 | 1 | 206 | 2.45e-107 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527900 | AT1G80940.1 | 60.099 | 203 | 68 | 4 | 2 | 196 | 14 | 211 | 2.54e-70 | 214 |
| Msa0527900 | AT1G80940.3 | 80.597 | 134 | 25 | 1 | 64 | 196 | 16 | 149 | 3.43e-70 | 212 |
| Msa0527900 | AT1G80940.2 | 72.826 | 92 | 17 | 2 | 54 | 137 | 61 | 152 | 7.97e-40 | 135 |
| Msa0527900 | AT1G80940.4 | 61.429 | 70 | 19 | 2 | 54 | 115 | 61 | 130 | 3.27e-22 | 89.4 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4_1:+563683 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4_1:+563838 | None:intergenic |
| TGGCTTCATCTCCCACTTCT+TGG | 0.208992 | 4_1:+563185 | None:intergenic |
| TCATTATTTGTTGCATGTTT+TGG | 0.214378 | 4_1:-565829 | Msa0527900:five_prime_UTR |
| CCTTCATTTGTTATTGAACT+TGG | 0.291570 | 4_1:-562843 | Msa0527900:CDS |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4_1:-563893 | Msa0527900:CDS |
| TATCAGCATCTTTGTTTGTA+AGG | 0.306286 | 4_1:-565940 | None:intergenic |
| CTTGTTATGTGTTGAGTTAT+GGG | 0.307513 | 4_1:-564706 | Msa0527900:CDS |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4_1:+563847 | None:intergenic |
| TCTTGTTATGTGTTGAGTTA+TGG | 0.335573 | 4_1:-564707 | Msa0527900:CDS |
| GTTGGTTGAAGGTGGAGGCC+AGG | 0.344738 | 4_1:+564674 | None:intergenic |
| TATAATATAATTCATCTTCA+AGG | 0.398042 | 4_1:+563155 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4_1:+563165 | None:intergenic |
| AATCTGAGGAGGTGTGAAAC+AGG | 0.413150 | 4_1:+565745 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4_1:-565779 | Msa0527900:CDS |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4_1:-563763 | Msa0527900:CDS |
| TGTAAGGTTGTTGAAAACTT+TGG | 0.430176 | 4_1:-565924 | Msa0527900:five_prime_UTR |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4_1:+563760 | None:intergenic |
| CACTAAAGAGGGTTGGTTGA+AGG | 0.458194 | 4_1:+564663 | None:intergenic |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4_1:-563218 | Msa0527900:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4_1:+563784 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4_1:-563362 | Msa0527900:CDS |
| GTGCAGGATAGAGAAATAGA+TGG | 0.509019 | 4_1:-563379 | Msa0527900:intron |
| CCAAGTTCAATAACAAATGA+AGG | 0.516045 | 4_1:+562843 | None:intergenic |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4_1:+563810 | None:intergenic |
| TTGGTTGAAGGTGGAGGCCA+GGG | 0.528872 | 4_1:+564675 | None:intergenic |
| CTTTAGTGTAGCCTCCATGT+TGG | 0.529968 | 4_1:-564648 | Msa0527900:intron |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4_1:-563881 | Msa0527900:CDS |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4_1:-565719 | Msa0527900:intron |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4_1:-563775 | Msa0527900:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4_1:+565731 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4_1:-563208 | Msa0527900:CDS |
| AGAGGGTTGGTTGAAGGTGG+AGG | 0.542023 | 4_1:+564669 | None:intergenic |
| ACATGGAGGCTACACTAAAG+AGG | 0.549170 | 4_1:+564651 | None:intergenic |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4_1:-565775 | Msa0527900:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4_1:-563348 | Msa0527900:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4_1:-563776 | Msa0527900:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4_1:+563818 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4_1:+563891 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4_1:-563686 | Msa0527900:intron |
| TAAAGAGGGTTGGTTGAAGG+TGG | 0.595732 | 4_1:+564666 | None:intergenic |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4_1:-563771 | Msa0527900:CDS |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4_1:-563197 | Msa0527900:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4_1:+563790 | None:intergenic |
| GAGGCTACACTAAAGAGGGT+TGG | 0.610189 | 4_1:+564656 | None:intergenic |
| CATGGAGGCTACACTAAAGA+GGG | 0.613879 | 4_1:+564652 | None:intergenic |
| CATATGCAAGGAAACCAACA+TGG | 0.618716 | 4_1:+564634 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4_1:+563804 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4_1:-563356 | Msa0527900:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4_1:-563196 | Msa0527900:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4_1:+563858 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4_1:-563317 | Msa0527900:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4_1:+563811 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4_1:-563714 | Msa0527900:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4_1:-563359 | Msa0527900:CDS |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4_1:+563787 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4_1:-563841 | Msa0527900:CDS |
| AGTTATGGGACAGCTAACCC+TGG | 0.670176 | 4_1:-564692 | Msa0527900:CDS |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4_1:+565734 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4_1:-563731 | Msa0527900:CDS |
| ATGCAAGGAAACCAACATGG+AGG | 0.760133 | 4_1:+564637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACTACAAATAATATA+TGG | + | chr4_1:563266-563285 | None:intergenic | 10.0% |
| !! | ATATATTATTTGTAGTATTT+AGG | - | chr4_1:563265-563284 | Msa0527900:CDS | 10.0% |
| !!! | TTTTTGTATGATAAAAATTT+TGG | + | chr4_1:563608-563627 | None:intergenic | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | + | chr4_1:563952-563971 | None:intergenic | 10.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | - | chr4_1:563211-563230 | Msa0527900:CDS | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | - | chr4_1:563581-563600 | Msa0527900:intron | 15.0% |
| !! | TTACATGAAAATAATAGTAT+TGG | + | chr4_1:563737-563756 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | + | chr4_1:563904-563923 | None:intergenic | 15.0% |
| !! | AAAATTGAAACATTCATATA+TGG | + | chr4_1:564202-564221 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | + | chr4_1:564258-564277 | None:intergenic | 15.0% |
| !! | TATAATATAATTCATCTTCA+AGG | + | chr4_1:565614-565633 | None:intergenic | 15.0% |
| !! | TACTACAAATAATATATGGT+GGG | + | chr4_1:563262-563281 | None:intergenic | 20.0% |
| !! | ATACTACAAATAATATATGG+TGG | + | chr4_1:563263-563282 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | - | chr4_1:563383-563402 | Msa0527900:intron | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | + | chr4_1:563577-563596 | None:intergenic | 20.0% |
| !!! | AATTGTTATTTTTGTGAACA+TGG | - | chr4_1:563958-563977 | Msa0527900:intron | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | - | chr4_1:564268-564287 | Msa0527900:intron | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | - | chr4_1:564281-564300 | Msa0527900:intron | 20.0% |
| !! | TTTACTATCTCTAAATAAGA+AGG | - | chr4_1:564456-564475 | Msa0527900:intron | 20.0% |
| !! | TGGTTACACTTAAATTATTA+CGG | - | chr4_1:564567-564586 | Msa0527900:intron | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | - | chr4_1:564737-564756 | Msa0527900:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | + | chr4_1:565121-565140 | None:intergenic | 20.0% |
| !! | ATATAGTAGTAGTATCAATA+TGG | - | chr4_1:565712-565731 | Msa0527900:intron | 20.0% |
| !! | TATAGTAGTAGTATCAATAT+GGG | - | chr4_1:565713-565732 | Msa0527900:intron | 20.0% |
| !!! | TCATTATTTGTTGCATGTTT+TGG | - | chr4_1:562937-562956 | Msa0527900:intron | 25.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | + | chr4_1:563075-563094 | None:intergenic | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | - | chr4_1:563423-563442 | Msa0527900:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | - | chr4_1:563547-563566 | Msa0527900:intron | 25.0% |
| !! | ATTGAACATGTTTTCAATCT+AGG | + | chr4_1:563689-563708 | None:intergenic | 25.0% |
| ! | AATTTAAGCACGATTAACTT+CGG | + | chr4_1:563823-563842 | None:intergenic | 25.0% |
| ! | ATTGAATTTCTTGATGTACA+AGG | - | chr4_1:563994-564013 | Msa0527900:intron | 25.0% |
| ! | TTGAATTTCTTGATGTACAA+GGG | - | chr4_1:563995-564014 | Msa0527900:intron | 25.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | + | chr4_1:564185-564204 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | - | chr4_1:564280-564299 | Msa0527900:intron | 25.0% |
| !!! | ATTTTCCTTCTTATTTTCTG+CGG | - | chr4_1:564407-564426 | Msa0527900:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | + | chr4_1:565133-565152 | None:intergenic | 25.0% |
| ! | TCAAGTGGATAAAAATAAAC+TGG | + | chr4_1:565247-565266 | None:intergenic | 25.0% |
| ! | ATAGTAGTAGTATCAATATG+GGG | - | chr4_1:565714-565733 | Msa0527900:intron | 25.0% |
| !!! | ATATTGGTCATTCAAGTTTT+CGG | + | chr4_1:565872-565891 | None:intergenic | 25.0% |
| TGTAAGGTTGTTGAAAACTT+TGG | - | chr4_1:562842-562861 | Msa0527900:CDS | 30.0% | |
| TAAAACCAAAAAGACTTGCA+AGG | - | chr4_1:562890-562909 | Msa0527900:intron | 30.0% | |
| ! | ATTTTCCTTGCAAGTCTTTT+TGG | + | chr4_1:562898-562917 | None:intergenic | 30.0% |
| !!! | TGCATGTTTTGGAATATTTC+TGG | - | chr4_1:562948-562967 | Msa0527900:intron | 30.0% |
| !!! | GGAAAATTTTGAAGCAACTA+TGG | - | chr4_1:562969-562988 | Msa0527900:intron | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | - | chr4_1:563543-563562 | Msa0527900:intron | 30.0% |
| ! | ATAGTATTGGACTATTGTGT+TGG | + | chr4_1:563724-563743 | None:intergenic | 30.0% |
| ! | TGTTGGTTACTTTCATAAAG+AGG | + | chr4_1:563887-563906 | None:intergenic | 30.0% |
| TGAATTTCTTGATGTACAAG+GGG | - | chr4_1:563996-564015 | Msa0527900:intron | 30.0% | |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | - | chr4_1:564059-564078 | Msa0527900:intron | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | - | chr4_1:564060-564079 | Msa0527900:intron | 30.0% |
| ATTAAGAAGTCACATATGCA+AGG | + | chr4_1:564147-564166 | None:intergenic | 30.0% | |
| AAATAAGAAGGAAGAAAACC+TGG | - | chr4_1:564468-564487 | Msa0527900:intron | 30.0% | |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | + | chr4_1:564922-564941 | None:intergenic | 30.0% |
| TAACCTTTCTGTTCATTTCT+TGG | + | chr4_1:565086-565105 | None:intergenic | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | + | chr4_1:565113-565132 | None:intergenic | 30.0% | |
| AGTGGATAAAAATAAACTGG+TGG | + | chr4_1:565244-565263 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | - | chr4_1:565304-565323 | Msa0527900:intron | 30.0% |
| ATATGCACTCTAATAACACA+CGG | + | chr4_1:565696-565715 | None:intergenic | 30.0% | |
| TAGTAGTAGTATCAATATGG+GGG | - | chr4_1:565715-565734 | Msa0527900:intron | 30.0% | |
| GACAGAGAATAGTTGTATAT+TGG | + | chr4_1:565888-565907 | None:intergenic | 30.0% | |
| ATATACAACTATTCTCTGTC+AGG | - | chr4_1:565888-565907 | Msa0527900:five_prime_UTR | 30.0% | |
| TATACAACTATTCTCTGTCA+GGG | - | chr4_1:565889-565908 | Msa0527900:five_prime_UTR | 30.0% | |
| CCAAGTTCAATAACAAATGA+AGG | + | chr4_1:565926-565945 | None:intergenic | 30.0% | |
| !! | CCTTCATTTGTTATTGAACT+TGG | - | chr4_1:565923-565942 | Msa0527900:five_prime_UTR | 30.0% |
| !!! | TTTTGAAGCAACTATGGTCA+TGG | - | chr4_1:562975-562994 | Msa0527900:intron | 35.0% |
| CTAGATTTCCAGAAAATCTG+AGG | + | chr4_1:563038-563057 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | - | chr4_1:563047-563066 | Msa0527900:intron | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | - | chr4_1:563471-563490 | Msa0527900:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | - | chr4_1:563504-563523 | Msa0527900:intron | 35.0% | |
| TGCAACAAAAACTTTCTAGG+TGG | + | chr4_1:563847-563866 | None:intergenic | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | - | chr4_1:564298-564317 | Msa0527900:intron | 35.0% | |
| TATCACCGCAGAAAATAAGA+AGG | + | chr4_1:564415-564434 | None:intergenic | 35.0% | |
| GCACAAACAATTCAGATTGA+AGG | - | chr4_1:564507-564526 | Msa0527900:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | + | chr4_1:564911-564930 | None:intergenic | 35.0% |
| GAACCTATAAAGAACAGCAA+CGG | - | chr4_1:564925-564944 | Msa0527900:intron | 35.0% | |
| ! | TAGTTTGCAGACTCAAAATC+AGG | + | chr4_1:564985-565004 | None:intergenic | 35.0% |
| AAAGCTTGTCAATGTTGATG+TGG | - | chr4_1:565035-565054 | Msa0527900:intron | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | - | chr4_1:565080-565099 | Msa0527900:intron | 35.0% | |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | - | chr4_1:565299-565318 | Msa0527900:intron | 35.0% |
| GTTACAAGAAACTGAGCAAA+TGG | - | chr4_1:565548-565567 | Msa0527900:intron | 35.0% | |
| TTCATCTTCAAGGTTCATCT+TGG | + | chr4_1:565604-565623 | None:intergenic | 35.0% | |
| !! | CTTGCTTTTCTCAAAAACAG+AGG | - | chr4_1:565755-565774 | Msa0527900:CDS | 35.0% |
| TATGGTCATGGATGATGCTT+TGG | - | chr4_1:562987-563006 | Msa0527900:intron | 40.0% | |
| GATTTCCAGAAAATCTGAGG+AGG | + | chr4_1:563035-563054 | None:intergenic | 40.0% | |
| CGGTGCAACAAAAACTTTCT+AGG | + | chr4_1:563850-563869 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | + | chr4_1:563870-563889 | None:intergenic | 40.0% |
| AAGGGGAATAAAAACCCATG+TGG | - | chr4_1:564013-564032 | Msa0527900:intron | 40.0% | |
| TAAAAACCCATGTGGCTGTT+TGG | - | chr4_1:564021-564040 | Msa0527900:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | + | chr4_1:564135-564154 | None:intergenic | 40.0% | |
| !! | GTGTGTTTGCTATCCAACAT+CGG | - | chr4_1:564529-564548 | Msa0527900:intron | 40.0% |
| ATGCTTCATAGATAGATCCC+TGG | - | chr4_1:564625-564644 | Msa0527900:intron | 40.0% | |
| !!! | CTCTTTTTTGAACCCTACCA+TGG | + | chr4_1:564651-564670 | None:intergenic | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | + | chr4_1:564838-564857 | None:intergenic | 40.0% |
| TTTGCAGACTCAAAATCAGG+TGG | + | chr4_1:564982-565001 | None:intergenic | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | - | chr4_1:564990-565009 | Msa0527900:intron | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | - | chr4_1:564991-565010 | Msa0527900:intron | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | + | chr4_1:565180-565199 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | + | chr4_1:565262-565281 | None:intergenic | 40.0% | |
| ! | TATTGCTAGCATTTTCCGCA+TGG | - | chr4_1:565333-565352 | Msa0527900:intron | 40.0% |
| ! | ATTTGACGACTTTTGTGTGC+AGG | - | chr4_1:565371-565390 | Msa0527900:intron | 40.0% |
| GTGCAGGATAGAGAAATAGA+TGG | - | chr4_1:565387-565406 | Msa0527900:intron | 40.0% | |
| ! | GTCATGGATGATGCTTTGGA+TGG | - | chr4_1:562991-563010 | Msa0527900:intron | 45.0% |
| ! | AATCTGAGGAGGTGTGAAAC+AGG | + | chr4_1:563024-563043 | None:intergenic | 45.0% |
| ! | TCACACCTCCTCAGATTTTC+TGG | - | chr4_1:563027-563046 | Msa0527900:intron | 45.0% |
| ! | GAGAGAGAAGCGTACAATAG+TGG | - | chr4_1:563493-563512 | Msa0527900:intron | 45.0% |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | + | chr4_1:564103-564122 | None:intergenic | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | + | chr4_1:564106-564125 | None:intergenic | 45.0% |
| CATGGAGGCTACACTAAAGA+GGG | + | chr4_1:564117-564136 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | + | chr4_1:564118-564137 | None:intergenic | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | - | chr4_1:564118-564137 | Msa0527900:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | + | chr4_1:564132-564151 | None:intergenic | 45.0% | |
| GCTACATAGAGCTCTATACC+AGG | + | chr4_1:564489-564508 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | - | chr4_1:564809-564828 | Msa0527900:intron | 45.0% | |
| !! | CATTAGGAGGAGTATCTTCC+GGG | + | chr4_1:564837-564856 | None:intergenic | 45.0% |
| GGAAGATACTCCTCCTAATG+TGG | - | chr4_1:564837-564856 | Msa0527900:intron | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | - | chr4_1:564846-564865 | Msa0527900:intron | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | + | chr4_1:564850-564869 | None:intergenic | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | + | chr4_1:564853-564872 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | - | chr4_1:564873-564892 | Msa0527900:intron | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | + | chr4_1:564878-564897 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | - | chr4_1:564995-565014 | Msa0527900:intron | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | - | chr4_1:565003-565022 | Msa0527900:intron | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | + | chr4_1:565009-565028 | None:intergenic | 45.0% | |
| ! | GTCGTCAAATGCATTAGCCT+CGG | + | chr4_1:565361-565380 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | - | chr4_1:565404-565423 | Msa0527900:intron | 45.0% |
| ACTGAGCAAATGGCAGATGA+AGG | - | chr4_1:565558-565577 | Msa0527900:intron | 45.0% | |
| TACGCTTCTCTCTCCTCTCT+TGG | + | chr4_1:563487-563506 | None:intergenic | 50.0% | |
| AACCCATGTGGCTGTTTGGA+TGG | - | chr4_1:564025-564044 | Msa0527900:intron | 50.0% | |
| CACCATCCAAACAGCCACAT+GGG | + | chr4_1:564030-564049 | None:intergenic | 50.0% | |
| ACACCATCCAAACAGCCACA+TGG | + | chr4_1:564031-564050 | None:intergenic | 50.0% | |
| AGTTATGGGACAGCTAACCC+TGG | - | chr4_1:564074-564093 | Msa0527900:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | + | chr4_1:564113-564132 | None:intergenic | 50.0% | |
| ATCGGCACGACACGATACAT+TGG | - | chr4_1:564547-564566 | Msa0527900:intron | 50.0% | |
| ACTGACACGACACTGACACA+TGG | + | chr4_1:564596-564615 | None:intergenic | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | - | chr4_1:564631-564650 | Msa0527900:intron | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | - | chr4_1:564636-564655 | Msa0527900:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | + | chr4_1:564645-564664 | None:intergenic | 50.0% | |
| ! | TTTTGAACCCTACCATGGCC+AGG | + | chr4_1:564646-564665 | None:intergenic | 50.0% |
| AACGTGTTCACCACAGCTAG+CGG | - | chr4_1:564761-564780 | Msa0527900:intron | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | + | chr4_1:564774-564793 | None:intergenic | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | - | chr4_1:564775-564794 | Msa0527900:intron | 50.0% | |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | + | chr4_1:564931-564950 | None:intergenic | 50.0% |
| AGGTGGAGGAAGCAAAGACT+CGG | + | chr4_1:564965-564984 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | + | chr4_1:564979-564998 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | - | chr4_1:565052-565071 | Msa0527900:intron | 50.0% |
| TGGACTAAACGAACAGCTGG+AGG | - | chr4_1:565407-565426 | Msa0527900:intron | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | - | chr4_1:565410-565429 | Msa0527900:intron | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | - | chr4_1:565570-565589 | Msa0527900:intron | 50.0% | |
| TGGCTTCATCTCCCACTTCT+TGG | + | chr4_1:565584-565603 | None:intergenic | 50.0% | |
| AAGCACAAGCATGCACACAC+TGG | + | chr4_1:565640-565659 | None:intergenic | 50.0% | |
| TTGGTTGAAGGTGGAGGCCA+GGG | + | chr4_1:564094-564113 | None:intergenic | 55.0% | |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | + | chr4_1:564100-564119 | None:intergenic | 55.0% |
| ! | GTATCGTGTCGTGCCGATGT+TGG | + | chr4_1:564545-564564 | None:intergenic | 55.0% |
| GATAGATCCCTGGCCATGGT+AGG | - | chr4_1:564635-564654 | Msa0527900:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | - | chr4_1:564762-564781 | Msa0527900:intron | 55.0% | |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | - | chr4_1:564885-564904 | Msa0527900:intron | 55.0% |
| GGAAGCAAAGACTCGGCAGA+GGG | + | chr4_1:564958-564977 | None:intergenic | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | + | chr4_1:564959-564978 | None:intergenic | 55.0% | |
| ! | GCATTTTCCGCATGGAACCG+AGG | - | chr4_1:565341-565360 | Msa0527900:intron | 55.0% |
| ! | GCATTAGCCTCGGTTCCATG+CGG | + | chr4_1:565351-565370 | None:intergenic | 55.0% |
| AACAGCTGGAGGAGGATTCG+CGG | - | chr4_1:565418-565437 | Msa0527900:intron | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | - | chr4_1:565449-565468 | Msa0527900:intron | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | - | chr4_1:565569-565588 | Msa0527900:intron | 55.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | + | chr4_1:564095-564114 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | - | chr4_1:564765-564784 | Msa0527900:intron | 60.0% | |
| CTAAAACACCACCCGGCACC+CGG | - | chr4_1:564816-564835 | Msa0527900:intron | 60.0% | |
| !! | AGGAGTATCTTCCGGGTGCC+GGG | + | chr4_1:564830-564849 | None:intergenic | 60.0% |
| !! | GAGGAGTATCTTCCGGGTGC+CGG | + | chr4_1:564831-564850 | None:intergenic | 60.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | + | chr4_1:564951-564970 | None:intergenic | 60.0% | |
| !! | AGTATCTTCCGGGTGCCGGG+TGG | + | chr4_1:564827-564846 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 562835 | 565953 | 562835 | ID=Msa0527900;Name=Msa0527900 |
| chr4_1 | mRNA | 562835 | 565953 | 562835 | ID=Msa0527900-mRNA-1;Parent=Msa0527900;Name=Msa0527900-mRNA-1;_AED=0.38;_eAED=0.38;_QI=153|0.25|0.2|0.8|1|1|5|0|230 |
| chr4_1 | exon | 562835 | 562878 | 562835 | ID=Msa0527900-mRNA-1:exon:104;Parent=Msa0527900-mRNA-1 |
| chr4_1 | exon | 563149 | 563395 | 563149 | ID=Msa0527900-mRNA-1:exon:103;Parent=Msa0527900-mRNA-1 |
| chr4_1 | exon | 563687 | 563920 | 563687 | ID=Msa0527900-mRNA-1:exon:102;Parent=Msa0527900-mRNA-1 |
| chr4_1 | exon | 564649 | 564735 | 564649 | ID=Msa0527900-mRNA-1:exon:101;Parent=Msa0527900-mRNA-1 |
| chr4_1 | exon | 565720 | 565953 | 565720 | ID=Msa0527900-mRNA-1:exon:100;Parent=Msa0527900-mRNA-1 |
| chr4_1 | five_prime_UTR | 565801 | 565953 | 565801 | ID=Msa0527900-mRNA-1:five_prime_utr;Parent=Msa0527900-mRNA-1 |
| chr4_1 | CDS | 565720 | 565800 | 565720 | ID=Msa0527900-mRNA-1:cds;Parent=Msa0527900-mRNA-1 |
| chr4_1 | CDS | 564649 | 564735 | 564649 | ID=Msa0527900-mRNA-1:cds;Parent=Msa0527900-mRNA-1 |
| chr4_1 | CDS | 563687 | 563920 | 563687 | ID=Msa0527900-mRNA-1:cds;Parent=Msa0527900-mRNA-1 |
| chr4_1 | CDS | 563149 | 563395 | 563149 | ID=Msa0527900-mRNA-1:cds;Parent=Msa0527900-mRNA-1 |
| chr4_1 | CDS | 562835 | 562878 | 562835 | ID=Msa0527900-mRNA-1:cds;Parent=Msa0527900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
