AlfalfaGEDB | Msa0572370

M. sativa cultivar zhongmu-4 / Msa0572370

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572370	XP_013447155.1	97.340	639	17	0	92	730	1	639	0.0	1277

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572370	sp\|Q9SUQ3\|Y4374_ARATH	67.430	611	183	8	104	700	19	627	0.0	800

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572370	A0A072TUR7	97.340	639	17	0	92	730	1	639	0.0	1277

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa0572370	0.820376	7.086424e-53	-8.615850e-47
Msa0002700	Msa0572370	0.828277	9.832102e-55	-8.615850e-47
Msa0003370	Msa0572370	0.841021	6.114741e-58	-8.615850e-47
Msa0004180	Msa0572370	0.816055	6.734030e-52	-8.615850e-47
Msa0011910	Msa0572370	0.800890	1.165584e-48	-8.615850e-47
Msa0021570	Msa0572370	0.826294	2.934989e-54	-8.615850e-47
Msa0024070	Msa0572370	0.824770	6.739820e-54	-8.615850e-47
Msa0026420	Msa0572370	-0.824836	6.505137e-54	-8.615850e-47
Msa0027020	Msa0572370	0.805290	1.433368e-49	-8.615850e-47
Msa0028410	Msa0572370	0.811250	7.689795e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0572370	MtrunA17_Chr8g0387791	97.340	639	17	0	92	730	1	639	0.0	1277
Msa0572370	MtrunA17_Chr5g0396941	69.005	613	157	5	91	702	7	587	0.0	854
Msa0572370	MtrunA17_Chr3g0126271	61.353	621	210	10	88	698	1	601	0.0	744
Msa0572370	MtrunA17_Chr1g0159161	57.492	614	209	13	92	699	5	572	0.0	666
Msa0572370	MtrunA17_Chr3g0108301	49.315	657	272	11	94	718	23	650	0.0	612
Msa0572370	MtrunA17_Chr5g0432851	51.433	628	286	9	94	710	31	650	0.0	597
Msa0572370	MtrunA17_Chr3g0128551	47.974	617	296	9	114	718	32	635	0.0	565
Msa0572370	MtrunA17_Chr7g0245171	49.340	606	286	8	95	687	10	607	0.0	547
Msa0572370	MtrunA17_Chr5g0428541	45.987	598	272	14	109	688	25	589	6.10e-168	496
Msa0572370	MtrunA17_Chr8g0393211	44.776	603	285	8	129	688	50	647	1.98e-156	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0572370	AT4G23740.1	67.430	611	183	8	104	700	19	627	800
Msa0572370	AT4G23740.2	67.430	611	183	8	104	700	19	627	800
Msa0572370	AT5G58300.3	50.660	606	280	7	114	705	48	648	607
Msa0572370	AT5G58300.1	50.660	606	280	7	114	705	48	648	607
Msa0572370	AT5G58300.2	50.660	606	280	7	114	705	48	648	607
Msa0572370	AT1G64210.1	52.787	610	247	12	94	690	4	585	595
Msa0572370	AT5G53320.1	52.677	579	237	9	113	687	25	570	573
Msa0572370	AT3G08680.1	49.837	612	285	8	94	687	8	615	565
Msa0572370	AT3G08680.2	49.837	612	285	8	94	687	8	615	565
Msa0572370	AT2G26730.1	48.485	627	280	10	97	692	11	625	550

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Find 171 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCTTTATCTTCAAC+AGG	0.313257	4_1:-75297150	None:intergenic
AAAAGCAGTTTCGAGGAACA+TGG	0.557721	4_1:+75297974	Msa0572370:CDS
AAACCTCTTTATCTTCAACA+GGG	0.686853	4_1:-75297149	None:intergenic
AAAGTAAAGTAATACTCACT+TGG	0.601581	4_1:-75296637	None:intergenic
AAATAAACTGACTTTCTTTG+AGG	0.402665	4_1:+75298004	Msa0572370:CDS
AAATCGCCCATCCACACAAC+CGG	0.488844	4_1:+75299387	Msa0572370:CDS
AACATTTGGTACTGCTTATA+AGG	0.261175	4_1:+75298091	Msa0572370:CDS
AACCGAGTATCCCAATCTAA+TGG	0.472741	4_1:-75299084	None:intergenic
AACCTTGAGAAATGAATATC+AGG	0.362363	4_1:-75297615	None:intergenic
AACGCCAAAGCTGTAAACAT+CGG	0.671248	4_1:-75299340	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGTGTGAAATGGAA+CGG	-	chr4_1:75296324-75296343	None:intergenic	30.0%
ACGATAAAAATGGTGTGAAA+TGG	-	chr4_1:75296329-75296348	None:intergenic	30.0%
GTAACGGTATACGATAAAAA+TGG	-	chr4_1:75296339-75296358	None:intergenic	30.0%
AATGAAATAGGTAGTAGTTG+TGG	-	chr4_1:75296430-75296449	None:intergenic	30.0%
TTCAAATTGTGATTCCTAGA+AGG	-	chr4_1:75296890-75296909	None:intergenic	30.0%
GTAAAAAAGAGAAAAAGGGT+TGG	-	chr4_1:75296922-75296941	None:intergenic	30.0%
TATGCGTATTGTTGTGTATA+TGG	+	chr4_1:75297112-75297131	Msa0572370:CDS	30.0%
AAACCTCTTTATCTTCAACA+GGG	-	chr4_1:75297152-75297171	None:intergenic	30.0%
AAAACCTCTTTATCTTCAAC+AGG	-	chr4_1:75297153-75297172	None:intergenic	30.0%
GTTCTTCTGTTTGTGATAAT+TGG	+	chr4_1:75297226-75297245	Msa0572370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	75296241	75300113	75296241	ID=Msa0572370;Name=Msa0572370
chr4_1	mRNA	75296241	75300113	75296241	ID=Msa0572370-mRNA-1;Parent=Msa0572370;Name=Msa0572370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=172\|1\|1\|1\|0.5\|0.33\|3\|361\|730
chr4_1	exon	75296241	75296644	75296241	ID=Msa0572370-mRNA-1:exon:26068;Parent=Msa0572370-mRNA-1
chr4_1	exon	75297052	75298320	75297052	ID=Msa0572370-mRNA-1:exon:26069;Parent=Msa0572370-mRNA-1
chr4_1	exon	75299061	75300113	75299061	ID=Msa0572370-mRNA-1:exon:26070;Parent=Msa0572370-mRNA-1
chr4_1	five_prime_UTR	75296241	75296412	75296241	ID=Msa0572370-mRNA-1:five_prime_utr;Parent=Msa0572370-mRNA-1
chr4_1	CDS	75296413	75296644	75296413	ID=Msa0572370-mRNA-1:cds;Parent=Msa0572370-mRNA-1
chr4_1	CDS	75297052	75298320	75297052	ID=Msa0572370-mRNA-1:cds;Parent=Msa0572370-mRNA-1
chr4_1	CDS	75299061	75299752	75299061	ID=Msa0572370-mRNA-1:cds;Parent=Msa0572370-mRNA-1
chr4_1	three_prime_UTR	75299753	75300113	75299753	ID=Msa0572370-mRNA-1:three_prime_utr;Parent=Msa0572370-mRNA-1

Gene Sequence

>Msa0572370

ATGTTATGTGTTCACCACAACTACTACCTATTTCATTTCACATTCCATTCCAGTGCATTCTATGCCACCACATTCATAACCAACTCAAACACAAAACAACTTTTTTTTTCCTTCTCTAATACGTTGCTTTGGTGCAAATTAAAGTGTGTATGTTTTGTTACGGAACAAAAAGACATTCTTTATTTCAGATCTGCAACACAAGAAAAATTGCCTTTGTCTTTCAGCCAAGTGACATTAAGCTTATTGCAGAAACTACTTGAAGTGGAAAAAAACATGAAATTTCTTCACATTTTATGCGTATTGTTGTGTATATGGCAAGGAAATTGTGACCCTGTTGAAGATAAAGAGGTTTTGCTTGATTTTGTGAACAAGTTTCCACCTTCAAGGACTTTGAATTGGAATGAAAGTTCTTCTGTTTGTGATAATTGGACTGGTGTTACTTGCAATGAAGATATGTCTAGAGTTATAGCTATTCGTTTACCTGGTGTTGGATTTCATGGCAATATTCCACCAAATACTATTAGTAACCTTTCAGCTCTTGAAATTCTGAGTCTTAGATCCAATTTAATATCTGGGTTTTTTCCTTCTGATTTTTCCAATCTAAAAAACTTGTCTTTTCTTTATCTTCAGTTCAATAATTTATCTGGGTCTTTGCCTGATTTCTCAGTTTGGAAGAATCTTACTGTTGTTAATTTGTCTAACAACAAATTCAATGGTACTATTCCGCTTTCTCTCTCTAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAATAATTCTCTTTCTGGTGAAATTCCTGATATTCATTTCTCAAGGTTACAGGTGCTGAATTTGTCTAACAATGATTTAGAAGGAACTGTGCCTAAATCATTACTGAGATTTCCTGATTCGGCATTTGTTGGGAATAACATTACTCTCGGAAATTCTACTGCTGTTTCGCCTGTGCTTTCGCCGGTTTATGAGCCTTCTTCGAGGTCTGAGAAACGTGGGAGGCTAAGTGAAACAGCACTGCTGGGAATTAGTATTGTTGGTAGTTTACTTGGGATTGTAGCATTTGGTTTTTTGATGTTTGTGTGTTGCTGCTCTAGAAAAAAGGATGAATATGATGATGATGCATTTGTTGGAAAGTCGAATAAGGGAAAAATGTCTCCGGAAAAAGCAGTTTCGAGGAACATGGATGCTAAAAATAAACTGACTTTCTTTGAGGGGTGTAATTATGCATTTGATTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTGCTGGGAAAGGGAACATTTGGTACTGCTTATAAGGCGATTCTTGAGGACGCGACTGCGGTTGTTGTGAAGAGATTGAAGGAAGTAGCCTTAGGAAAGAAGGATTTTGAGCAATATATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTAGTTGAGCTCAAGGCATATTACTATTCCAAAGATGAGAAACTTATGGTATATGATTACTACAGCCGAGGGAGTGTCTCTTCTTTGTTGCATGGGAAAAGAGGAGAGGACAAGGTGCCATTAGATTGGGATACTCGGTTGAGAATAGCTTTAGGTGCAGCAAGAGGCATTGCTCAAATCCATGTCGAGAATGGCGGTAAACTTGTCCATGGCAACATCAAGTCCTCAAATATCTTTCTCAATTCTAAACAATATGGCTGTGTATCTGATCTTGGTCTAGCAACCATATCAACCTCACTTGCCCTACCCATCTCACGCGCGGCCGGTTACCGAGCACCTGAAGTTACAGACACAAGGAAAGCCGCACAACCTTCCGATGTTTACAGCTTTGGCGTTGTATTACTAGAGCTTCTGACCGGGAAATCGCCCATCCACACAACCGGTGGTGATGAGATCATTCACTTGGTGAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACGGCCGAAGTGTTTGACTTAGAGTTGATGAGATATCCAAACATAGAAGAAGAGATGGTCGAGATGTTGCAGATAGCTATGTCATGTGTGGTAAGAATGCCTGATCAGAGGCCTAAGATGTCAGAAGTTGTGAAGATGATAGAAAATGTGAGACAGATTGATAATACACAAACTCAGCCATCATCTGAGAATCAAGGAGGAGTTAAATTATCATCTCAAACTGATAATGATAACATTAACTCCCCTTCTTCCACTTCATCCCCCTTACCAAAAGGAAGTGAATGA

Protein sequence

>Msa0572370

MLCVHHNYYLFHFTFHSSAFYATTFITNSNTKQLFFSFSNTLLWCKLKCVCFVTEQKDILYFRSATQEKLPLSFSQVTLSLLQKLLEVEKNMKFLHILCVLLCIWQGNCDPVEDKEVLLDFVNKFPPSRTLNWNESSSVCDNWTGVTCNEDMSRVIAIRLPGVGFHGNIPPNTISNLSALEILSLRSNLISGFFPSDFSNLKNLSFLYLQFNNLSGSLPDFSVWKNLTVVNLSNNKFNGTIPLSLSNLTQLAGLNLANNSLSGEIPDIHFSRLQVLNLSNNDLEGTVPKSLLRFPDSAFVGNNITLGNSTAVSPVLSPVYEPSSRSEKRGRLSETALLGISIVGSLLGIVAFGFLMFVCCCSRKKDEYDDDAFVGKSNKGKMSPEKAVSRNMDAKNKLTFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKEVALGKKDFEQYMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSRGSVSSLLHGKRGEDKVPLDWDTRLRIALGAARGIAQIHVENGGKLVHGNIKSSNIFLNSKQYGCVSDLGLATISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDNTQTQPSSENQGGVKLSSQTDNDNINSPSSTSSPLPKGSE*