AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319060 MtrunA17_Chr2g0293101 87.281 912 46 4 1 842 1 912 0.0 1588
Msa0319060 MtrunA17_Chr2g0293111 86.659 907 50 5 1 836 1 907 0.0 1565
Msa0319060 MtrunA17_Chr1g0209901 42.778 907 411 14 32 841 28 923 0.0 730
Msa0319060 MtrunA17_Chr5g0423841 42.667 900 412 14 39 841 33 925 0.0 717
Msa0319060 MtrunA17_Chr1g0209911 42.111 938 423 18 16 841 7 936 0.0 713
Msa0319060 MtrunA17_Chr3g0130691 30.435 644 362 19 200 778 237 859 6.05e-73 257
Msa0319060 MtrunA17_Chr5g0409111 28.551 697 408 24 123 768 94 751 9.12e-66 238
Msa0319060 MtrunA17_Chr7g0256191 29.004 231 137 10 480 689 633 857 3.76e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319060 AT5G11720.1 59.255 886 282 10 28 841 23 901 0.0 1035
Msa0319060 AT1G68560.1 43.701 897 409 14 34 841 23 912 0.0 733
Msa0319060 AT3G45940.1 42.380 899 397 15 17 841 1 852 0.0 691
Msa0319060 AT5G63840.1 30.827 665 362 21 187 778 226 865 1.10e-78 273
Msa0319060 AT5G63840.2 30.827 665 362 21 187 778 253 892 1.58e-78 273
Msa0319060 AT3G23640.2 28.956 632 365 20 182 763 83 680 2.31e-69 248
Msa0319060 AT3G23640.1 28.956 632 365 20 182 763 83 680 2.31e-69 248
Msa0319060 AT3G23640.3 28.956 632 365 20 182 763 152 749 3.10e-69 248

Find 168 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTAATAGTCAAGAATTT+TGG 0.071894 2_4:-18344470 Msa0319060:CDS
TGAAACATTTCTAGTCTTTA+AGG 0.082654 2_4:-18346368 Msa0319060:CDS
CCTAATTATGGTAGGTTAAA+TGG 0.142786 2_4:-18342962 Msa0319060:CDS
TAGTGATAGTGGAATGTTTC+TGG 0.165390 2_4:+18346972 None:intergenic
CAAACCAAACTTTCACTCTT+TGG 0.188927 2_4:-18346252 Msa0319060:CDS
TTAAAGACTAGAAATGTTTC+AGG 0.191590 2_4:+18346370 None:intergenic
CCTATGCCTTATTGGTCTTT+TGG 0.203546 2_4:-18345956 Msa0319060:intron
TTCATCTCCTGAATTGGTTT+TGG 0.204644 2_4:-18346011 Msa0319060:CDS
CATACTTTCCTAAAGGAAAT+TGG 0.207731 2_4:-18343369 Msa0319060:CDS
CCATTTAACCTACCATAATT+AGG 0.210385 2_4:+18342962 None:intergenic
ATATTGAACTTTGGAATCTT+TGG 0.211841 2_4:-18344051 Msa0319060:CDS
GGCCTGCTCCTATGCCTTAT+TGG 0.219189 2_4:-18345964 Msa0319060:CDS
TCAAATTTAAAACAGCTTAT+AGG 0.237471 2_4:-18342827 Msa0319060:CDS
CCAGCAACATCTTTACATTA+TGG 0.237583 2_4:-18344273 Msa0319060:intron
GCCCAAAATTCTTGACTATT+AGG 0.243019 2_4:+18344468 None:intergenic
AATGTTGATGTGAATCTTTA+TGG 0.246990 2_4:-18346208 Msa0319060:CDS
AGAGCTTCTCTGTATGGTTT+TGG 0.249948 2_4:-18346307 Msa0319060:CDS
GGGAGTATCAATTTATGTTT+TGG 0.260434 2_4:+18347340 None:intergenic
TTTCTCACATCCAAATAAAA+TGG 0.270492 2_4:+18346178 None:intergenic
ACTATGTCGGCGCTGGATTC+AGG 0.280579 2_4:-18343974 Msa0319060:intron
ATCTCTTGCAAAGGGGTAAA+AGG 0.281980 2_4:+18343663 None:intergenic
TGTTGGCGAAGGTAACATTT+TGG 0.289442 2_4:-18343257 Msa0319060:CDS
TGCTGGTTCATCTCCTGAAT+TGG 0.290484 2_4:-18346017 Msa0319060:CDS
CATTCCAAAGAGTGAAAGTT+TGG 0.290677 2_4:+18346248 None:intergenic
AGAAATGTTTCAGGGTTTAA+AGG 0.291288 2_4:+18346379 None:intergenic
TAGTTATGGACAAGTATATT+TGG 0.294389 2_4:-18343152 Msa0319060:CDS
AGATCAAACCAATTTCCTTT+AGG 0.302482 2_4:+18343361 None:intergenic
TACATTAGTGTGTAGAAATA+TGG 0.304092 2_4:+18343544 None:intergenic
ACTCTTGGAATCACTTCTTC+TGG 0.305872 2_4:+18346580 None:intergenic
AAAATATTGTTACTTCTTAG+TGG 0.309008 2_4:-18347453 None:intergenic
GTTACTTCTAATGTTACTAA+TGG 0.318927 2_4:-18343040 Msa0319060:CDS
TTATCTTGCGGAAAATTAAC+AGG 0.322577 2_4:+18344995 None:intergenic
CGGTGATCGTCTTACTTATA+AGG 0.324376 2_4:-18346071 Msa0319060:CDS
TACTGATCCAAAACCAATTC+AGG 0.336794 2_4:+18346004 None:intergenic
ACAGATCAACACAAACAAAA+TGG 0.341556 2_4:-18347016 Msa0319060:exon
ACTCTTTGGAATGAAGATAT+TGG 0.343085 2_4:-18346238 Msa0319060:CDS
TGTCATTGCTTCACCTTGTA+AGG 0.344670 2_4:+18343234 None:intergenic
GAAGACTAAAATAAGGTAGA+AGG 0.349390 2_4:-18342789 Msa0319060:exon
ATAGAAAAGGTCACATTCTT+GGG 0.349460 2_4:-18342989 Msa0319060:CDS
CATAGAAAAGGTCACATTCT+TGG 0.351516 2_4:-18342990 Msa0319060:CDS
CTCCACAACACAACTCCATT+TGG 0.353407 2_4:-18346460 Msa0319060:CDS
CAGGCAAGAGCTTTACCTTT+GGG 0.354744 2_4:-18343620 Msa0319060:CDS
TTCTTGGGGATACCTAATTA+TGG 0.360897 2_4:-18342974 Msa0319060:CDS
AGAATGCAAAGCAACTAATC+AGG 0.364756 2_4:-18344208 Msa0319060:intron
AGTGGAAATGGAAATAGTTA+TGG 0.365462 2_4:-18343166 Msa0319060:CDS
TTGAACTGAAGACTAAAATA+AGG 0.365980 2_4:-18342796 Msa0319060:CDS
TGGTGGATATAACCGGTAAA+AGG 0.369319 2_4:-18344182 Msa0319060:CDS
ATCCCTTCAATATTGAACTT+TGG 0.371152 2_4:-18344060 Msa0319060:CDS
ATAAACTCACAGTTTCTATT+AGG 0.376587 2_4:-18343445 Msa0319060:CDS
CTATTAGGATTAAGAAAATC+AGG 0.379714 2_4:+18344483 None:intergenic
GATCAGTATACTCAGTTCAT+TGG 0.382985 2_4:-18345989 Msa0319060:CDS
TACTAATGGAAAATTTGCTT+TGG 0.383338 2_4:-18343026 Msa0319060:CDS
GAAATGTTTCAGGGTTTAAA+GGG 0.385560 2_4:+18346380 None:intergenic
GAACACCTCATTCGAACTAT+TGG 0.389488 2_4:-18343197 Msa0319060:CDS
TCTTACTCTTAATTGATCCT+TGG 0.395280 2_4:+18346636 None:intergenic
ATCTTTGGAGTTCCTATGGT+TGG 0.396209 2_4:-18344036 Msa0319060:CDS
CCTTACAAAATTAACAGTTC+TGG 0.396993 2_4:-18344327 Msa0319060:CDS
AAAGAAACACAAACTGGTTA+TGG 0.398538 2_4:-18346889 Msa0319060:CDS
AAGAAAGCACATATTCTTTG+AGG 0.399225 2_4:+18342746 None:intergenic
AAGAAAAGTGGCCGCGCAAT+TGG 0.399941 2_4:+18343499 None:intergenic
GTGAAGATAAGGTCTGAGTT+TGG 0.402724 2_4:+18346484 None:intergenic
AATTCAGTGAGTGCCGAATC+AGG 0.403598 2_4:-18343325 Msa0319060:CDS
CGTCTTACTTATAAGGTGAT+TGG 0.409781 2_4:-18346064 Msa0319060:CDS
TAGGTTAAATGGAAATGATT+TGG 0.418443 2_4:-18342951 Msa0319060:CDS
TTTGACATATTTGCCTGATT+CGG 0.419183 2_4:+18343312 None:intergenic
TGGAATCTTTGGAGTTCCTA+TGG 0.422002 2_4:-18344040 Msa0319060:CDS
TCAGGCAAGAGCTTTACCTT+TGG 0.428705 2_4:-18343621 Msa0319060:CDS
TTCGGCACTCACTGAATTTG+AGG 0.433112 2_4:+18343330 None:intergenic
TCAGAAATATGTGCTTATCT+TGG 0.433264 2_4:-18344936 Msa0319060:CDS
CAGAAGGCTAGTAGTGATAG+TGG 0.433587 2_4:+18346961 None:intergenic
ATTCCAAAGTTCAATATTGA+AGG 0.434787 2_4:+18344057 None:intergenic
CAAAGCAACTAATCAGGCTT+TGG 0.444853 2_4:-18344202 Msa0319060:intron
CCATAATGTAAAGATGTTGC+TGG 0.446043 2_4:+18344273 None:intergenic
GTCTCACCTGTGCTACAATC+TGG 0.446789 2_4:-18343409 Msa0319060:CDS
TTATCTAGTATAGTGTCAAA+AGG 0.447920 2_4:-18342650 Msa0319060:three_prime_UTR
TCTGAATGATCTCTTGCAAA+GGG 0.451001 2_4:+18343655 None:intergenic
ATGTACGAATCAAACACAAA+AGG 0.457037 2_4:-18343526 Msa0319060:CDS
GGTGATTCTCTTGATCTAGA+AGG 0.457430 2_4:-18343124 Msa0319060:CDS
GATGAAGATGATGAGACTCT+TGG 0.463129 2_4:+18346565 None:intergenic
CTGATTCAAACAATCAAAGA+TGG 0.463871 2_4:-18346609 Msa0319060:CDS
CAGGCTTTGGTGGATATAAC+CGG 0.464171 2_4:-18344189 Msa0319060:CDS
TATCTGTCCACATAACTTCA+AGG 0.466342 2_4:+18345056 None:intergenic
GTTGATGCATACTTTCCTAA+AGG 0.469389 2_4:-18343376 Msa0319060:CDS
AGCAACTAATCAGGCTTTGG+TGG 0.472427 2_4:-18344199 Msa0319060:CDS
CCATCAAAAGAAACACAAAC+TGG 0.479486 2_4:-18346895 Msa0319060:CDS
CACTTCTCAACCTCAGTGCC+AGG 0.484820 2_4:-18346768 Msa0319060:intron
TATGAGAAAACAATGAATGA+TGG 0.486107 2_4:+18347380 None:intergenic
TGTACGAATCAAACACAAAA+GGG 0.487657 2_4:-18343525 Msa0319060:CDS
TAAAGACTAGAAATGTTTCA+GGG 0.489335 2_4:+18346371 None:intergenic
GACTTACCAAAAGACCAATA+AGG 0.490076 2_4:+18345950 None:intergenic
TCGGCACTCACTGAATTTGA+GGG 0.495031 2_4:+18343331 None:intergenic
TCAAGCCAAAGACCATCAAA+AGG 0.495965 2_4:+18344414 None:intergenic
CGCGTGATAGTGAAACCAAA+TGG 0.496436 2_4:+18346445 None:intergenic
TCGTATGTCGTGATATCCTC+GGG 0.500032 2_4:+18343469 None:intergenic
CTGGCAAGTATACAGCTCAT+TGG 0.501264 2_4:-18344125 Msa0319060:CDS
ACTTCTTAATAGTAATGGAA+TGG 0.506681 2_4:-18346107 Msa0319060:CDS
AGGTTGAGAAGTGGAATGTC+AGG 0.508109 2_4:+18346778 None:intergenic
GTTGATCTACTCAAAATGAA+TGG 0.508385 2_4:+18344159 None:intergenic
TTCCAAAGTTCAATATTGAA+GGG 0.515791 2_4:+18344058 None:intergenic
CTTACTTATAAGGTGATTGG+TGG 0.516125 2_4:-18346061 Msa0319060:CDS
GACCAATAAGGCATAGGAGC+AGG 0.516640 2_4:+18345962 None:intergenic
GTGAGAAAGGGTTCATCTGA+TGG 0.517583 2_4:-18346163 Msa0319060:intron
GGACAAGTATATTTGGATGA+TGG 0.526308 2_4:-18343145 Msa0319060:CDS
TTCGTATGTCGTGATATCCT+CGG 0.526702 2_4:+18343468 None:intergenic
AAGGTAAAGCTCTTGCCTGA+TGG 0.527100 2_4:+18343624 None:intergenic
TATCTAGTATAGTGTCAAAA+GGG 0.534291 2_4:-18342649 Msa0319060:three_prime_UTR
CATATATCCGCTCCAACCAT+AGG 0.534754 2_4:+18344024 None:intergenic
CTGAAGAACTATGTCGGCGC+TGG 0.534767 2_4:-18343981 Msa0319060:CDS
GTGTGTAGAAATATGGAAGA+AGG 0.535911 2_4:+18343551 None:intergenic
ATCTGAATGATCTCTTGCAA+AGG 0.539186 2_4:+18343654 None:intergenic
ATCTGTCCACATAACTTCAA+GGG 0.541232 2_4:+18345057 None:intergenic
GCATACCCCTTGAAGTTATG+TGG 0.541516 2_4:-18345063 Msa0319060:CDS
TATGTGCTTATCTTGGATCC+AGG 0.542404 2_4:-18344929 Msa0319060:intron
TAGAAGGAGAGAAAGATCAA+TGG 0.544165 2_4:-18343108 Msa0319060:CDS
CAGGAGATAATGCTGCTACA+TGG 0.545216 2_4:-18344101 Msa0319060:CDS
AAGTATACAGCTCATTGGAC+AGG 0.547239 2_4:-18344120 Msa0319060:CDS
TGTTGTGGAGTGTGAAGATA+AGG 0.549530 2_4:+18346473 None:intergenic
TACTTCTTAGTGGAAAATGT+TGG 0.550682 2_4:-18347443 Msa0319060:five_prime_UTR
GTAACCAACTATGCAAAAGC+TGG 0.550918 2_4:-18345085 Msa0319060:CDS
AAACTTATCATCTTATCTTG+CGG 0.554720 2_4:+18344983 None:intergenic
TGGGGATACCTAATTATGGT+AGG 0.555154 2_4:-18342970 Msa0319060:CDS
GTCTTCTAAGTTTGTTACTG+TGG 0.557046 2_4:-18342855 Msa0319060:CDS
GTGGACAGATATTGATTACA+TGG 0.557543 2_4:-18345044 Msa0319060:CDS
AGTATACTCAGTTCATTGGT+AGG 0.561924 2_4:-18345985 Msa0319060:CDS
CTGATGGAAGAGTGAAAAGT+GGG 0.562079 2_4:-18346147 Msa0319060:CDS
ATAAAGATTCACATCAACAT+TGG 0.567891 2_4:+18346210 None:intergenic
CCAAAAGACCAATAAGGCAT+AGG 0.573302 2_4:+18345956 None:intergenic
AACAACCAATAGTTCGAATG+AGG 0.573769 2_4:+18343192 None:intergenic
GTGAAAAGTGGGGCCACACA+TGG 0.573803 2_4:-18346136 Msa0319060:CDS
AAGACTAAAATAAGGTAGAA+GGG 0.574007 2_4:-18342788 Msa0319060:exon
TGGAAGAAGGCGGTAACGAA+GGG 0.574037 2_4:+18343564 None:intergenic
TGATTCAAACAATCAAAGAT+GGG 0.574586 2_4:-18346608 Msa0319060:CDS
ACTGCACCAGATTGTAGCAC+AGG 0.578361 2_4:+18343403 None:intergenic
TCACAGTTTCTATTAGGCAA+AGG 0.581170 2_4:-18343439 Msa0319060:CDS
GGAGACAAGCTATGTTGACT+AGG 0.582782 2_4:+18347401 None:intergenic
CAAGCCAAAGACCATCAAAA+GGG 0.585119 2_4:+18344415 None:intergenic
ATAAATGTGCATGTTGGCGA+AGG 0.585403 2_4:-18343268 Msa0319060:CDS
AACCAAATGGAGTTGTGTTG+TGG 0.590183 2_4:+18346458 None:intergenic
GGGTTGTCATGGTTTGAATG+TGG 0.592344 2_4:+18344351 None:intergenic
ATGGAAGAAGGCGGTAACGA+AGG 0.592743 2_4:+18343563 None:intergenic
AAAACTCATCAAATCCTCCT+CGG 0.602708 2_4:-18346809 Msa0319060:CDS
ACCTTAACTAAGGTGAAACA+AGG 0.603803 2_4:+18342698 None:intergenic
ACACTACTGAAGAACTATGT+CGG 0.607415 2_4:-18343987 Msa0319060:CDS
TGGAGTTCCTATGGTTGGAG+CGG 0.611312 2_4:-18344031 Msa0319060:CDS
TCGGGGAATGAAAAGAAAAG+TGG 0.613496 2_4:+18343487 None:intergenic
AAGAAGTAAAACACCATGTG+TGG 0.615128 2_4:+18346123 None:intergenic
TCTGATGGAAGAGTGAAAAG+TGG 0.615826 2_4:-18346148 Msa0319060:CDS
AGTGAGTTGAATGTTGTGAG+TGG 0.625431 2_4:-18342923 Msa0319060:CDS
TGCACATTTATGTGATCAGA+TGG 0.629493 2_4:+18343280 None:intergenic
TAGTTAGTTACCTGGCACTG+AGG 0.632289 2_4:+18346758 None:intergenic
CTGGCACTGAGGTTGAGAAG+TGG 0.635565 2_4:+18346769 None:intergenic
TGTAAGTGATGTCGAAGGTG+TGG 0.640371 2_4:-18345107 Msa0319060:CDS
TAGAAAAGGTCACATTCTTG+GGG 0.641323 2_4:-18342988 Msa0319060:CDS
CAATGACAACAAAAGCAGCT+CGG 0.641688 2_4:-18343219 Msa0319060:CDS
TCTGTCCACATAACTTCAAG+GGG 0.647898 2_4:+18345058 None:intergenic
ATGGTTGGAGCGGATATATG+CGG 0.650160 2_4:-18344021 Msa0319060:CDS
TGTAGAAATATGGAAGAAGG+CGG 0.651249 2_4:+18343554 None:intergenic
AAGAATGTAAGTGATGTCGA+AGG 0.660102 2_4:-18345112 Msa0319060:CDS
ATGCTGCAACTGAATCCCAA+AGG 0.664437 2_4:+18343605 None:intergenic
GATCACATAAATGTGCATGT+TGG 0.667069 2_4:-18343274 Msa0319060:CDS
GACACAAAGATTGAGACAGA+AGG 0.668866 2_4:+18346945 None:intergenic
CTGAATGATCTCTTGCAAAG+GGG 0.678141 2_4:+18343656 None:intergenic
CAAAAGGGACACCAATTGCG+CGG 0.682204 2_4:-18343510 Msa0319060:CDS
CCTTAACTAAGGTGAAACAA+GGG 0.685925 2_4:+18342699 None:intergenic
GGAATGGATGTTGAATATAG+CGG 0.714622 2_4:-18346091 Msa0319060:CDS
TGAGTGGAATGAATTCAATG+AGG 0.735898 2_4:-18342907 Msa0319060:CDS
TGATGGAAGAGTGAAAAGTG+GGG 0.741184 2_4:-18346146 Msa0319060:CDS
CGTATGTCGTGATATCCTCG+GGG 0.754542 2_4:+18343470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTTAATAAGGATAATT+TGG + chr2_4:18342825-18342844 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr2_4:18342824-18342843 Msa0319060:CDS 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr2_4:18342848-18342867 Msa0319060:CDS 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr2_4:18342951-18342970 Msa0319060:CDS 15.0%
!! AAAAAACAATAAACTATGAT+TGG + chr2_4:18343335-18343354 None:intergenic 15.0%
!! AAATTTATAAAAGCTACATA+TGG - chr2_4:18346159-18346178 Msa0319060:intron 15.0%
!! AATCATTAAAAGAAAGAGAA+TGG - chr2_4:18342791-18342810 Msa0319060:exon 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr2_4:18342834-18342853 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr2_4:18342911-18342930 Msa0319060:CDS 20.0%
!!! GTTTTACTTCTTAATAGTAA+TGG - chr2_4:18343943-18343962 Msa0319060:intron 20.0%
!!! TTTGATTTGTATTTTTTTGC+TGG - chr2_4:18344021-18344040 Msa0319060:CDS 20.0%
!!! TTTTTTCTATCACAATAACA+TGG - chr2_4:18344525-18344544 Msa0319060:intron 20.0%
!! GTCTTTATATTTAGAAATTG+TGG + chr2_4:18344615-18344634 None:intergenic 20.0%
!! TTTGTGTATCATCTATATAT+AGG + chr2_4:18344721-18344740 None:intergenic 20.0%
!! CACAAAATTAATCCATATAA+AGG - chr2_4:18344735-18344754 Msa0319060:intron 20.0%
!! TTTCATAAAGTACAATTCAA+TGG + chr2_4:18344768-18344787 None:intergenic 20.0%
!! TGGAATTTGATATAATGAAT+CGG + chr2_4:18344861-18344880 None:intergenic 20.0%
!! TTCATTATATCAAATTCCAA+TGG - chr2_4:18344862-18344881 Msa0319060:intron 20.0%
!!! TATTTTATGGTGTTAGAATT+AGG + chr2_4:18345154-18345173 None:intergenic 20.0%
!!! TTAGTTTGGAAGATATTTTA+TGG + chr2_4:18345167-18345186 None:intergenic 20.0%
!! GATGTATATATAAAGAGAAA+TGG - chr2_4:18345506-18345525 Msa0319060:intron 20.0%
!!! TTTTGATCACAAAATTTGAT+AGG - chr2_4:18347178-18347197 Msa0319060:intron 20.0%
!!! TCAAATTTAAAACAGCTTAT+AGG - chr2_4:18347228-18347247 Msa0319060:intron 20.0%
! TATGAGAAAACAATGAATGA+TGG + chr2_4:18342678-18342697 None:intergenic 25.0%
!!! TTTATGTTTTGGATACAAGT+TGG + chr2_4:18342707-18342726 None:intergenic 25.0%
!!! ATGTTTCTGGTTTTAGTTAT+TGG + chr2_4:18343073-18343092 None:intergenic 25.0%
! AACAATCTAGTAAAAGAGAA+AGG + chr2_4:18343363-18343382 None:intergenic 25.0%
! TGATTCAAACAATCAAAGAT+GGG - chr2_4:18343447-18343466 Msa0319060:CDS 25.0%
!!! ATTTTGAGTTTTGCGAATTT+TGG + chr2_4:18343537-18343556 None:intergenic 25.0%
!! GTTAAAGAGTATATCTTTGT+TGG + chr2_4:18343641-18343660 None:intergenic 25.0%
! TAAAGACTAGAAATGTTTCA+GGG + chr2_4:18343687-18343706 None:intergenic 25.0%
! TTAAAGACTAGAAATGTTTC+AGG + chr2_4:18343688-18343707 None:intergenic 25.0%
!!! TGAAACATTTCTAGTCTTTA+AGG - chr2_4:18343687-18343706 Msa0319060:intron 25.0%
! ATAAAGATTCACATCAACAT+TGG + chr2_4:18343848-18343867 None:intergenic 25.0%
! AATGTTGATGTGAATCTTTA+TGG - chr2_4:18343847-18343866 Msa0319060:intron 25.0%
! TTTCTCACATCCAAATAAAA+TGG + chr2_4:18343880-18343899 None:intergenic 25.0%
!!! ATTTTATTTGGATGTGAGAA+AGG - chr2_4:18343879-18343898 Msa0319060:intron 25.0%
!!! TTTTATTTGGATGTGAGAAA+GGG - chr2_4:18343880-18343899 Msa0319060:intron 25.0%
!! ACTTCTTAATAGTAATGGAA+TGG - chr2_4:18343948-18343967 Msa0319060:intron 25.0%
! AAAAATTCAACAAACCATGT+TGG + chr2_4:18344130-18344149 None:intergenic 25.0%
!! TTTTTCATTCCTTTTTATCC+TGG - chr2_4:18344145-18344164 Msa0319060:CDS 25.0%
! ACTTGAAAGAATGTGTTTAT+AGG - chr2_4:18344646-18344665 Msa0319060:intron 25.0%
! CAAAGAGTTTACAATATTTG+TGG + chr2_4:18344892-18344911 None:intergenic 25.0%
! ATATTGTAAACTCTTTGTGA+AGG - chr2_4:18344895-18344914 Msa0319060:intron 25.0%
! AAACTTATCATCTTATCTTG+CGG + chr2_4:18345075-18345094 None:intergenic 25.0%
! TGAGTATAGTATGTTTAGTT+TGG + chr2_4:18345181-18345200 None:intergenic 25.0%
! CTATTAGGATTAAGAAAATC+AGG + chr2_4:18345575-18345594 None:intergenic 25.0%
!! ATCCTAATAGTCAAGAATTT+TGG - chr2_4:18345585-18345604 Msa0319060:intron 25.0%
!! TCCTAATAGTCAAGAATTTT+GGG - chr2_4:18345586-18345605 Msa0319060:intron 25.0%
!! AACTGTTAATTTTGTAAGGA+GGG + chr2_4:18345727-18345746 None:intergenic 25.0%
! TATGATTCTCACAATTTGTA+TGG - chr2_4:18345818-18345837 Msa0319060:intron 25.0%
! TTCCAAAGTTCAATATTGAA+GGG + chr2_4:18346000-18346019 None:intergenic 25.0%
! ATTCCAAAGTTCAATATTGA+AGG + chr2_4:18346001-18346020 None:intergenic 25.0%
!!! ATATTGAACTTTGGAATCTT+TGG - chr2_4:18346004-18346023 Msa0319060:CDS 25.0%
!! TTATTTTCCTGAATGTAGTT+AGG - chr2_4:18346367-18346386 Msa0319060:CDS 25.0%
!! TATTTTCCTGAATGTAGTTA+GGG - chr2_4:18346368-18346387 Msa0319060:CDS 25.0%
! ATTCAGATAAAAATTCCATC+AGG - chr2_4:18346416-18346435 Msa0319060:intron 25.0%
! TACATTAGTGTGTAGAAATA+TGG + chr2_4:18346514-18346533 None:intergenic 25.0%
! ATAAACTCACAGTTTCTATT+AGG - chr2_4:18346610-18346629 Msa0319060:CDS 25.0%
! TAGTTATGGACAAGTATATT+TGG - chr2_4:18346903-18346922 Msa0319060:CDS 25.0%
! GTTACTTCTAATGTTACTAA+TGG - chr2_4:18347015-18347034 Msa0319060:exon 25.0%
!! TACTAATGGAAAATTTGCTT+TGG - chr2_4:18347029-18347048 Msa0319060:five_prime_UTR 25.0%
! TAGGTTAAATGGAAATGATT+TGG - chr2_4:18347104-18347123 Msa0319060:intron 25.0%
! TTGAACTGAAGACTAAAATA+AGG - chr2_4:18347259-18347278 Msa0319060:intron 25.0%
! AAGACTAAAATAAGGTAGAA+GGG - chr2_4:18347267-18347286 Msa0319060:intron 25.0%
! TTATCTAGTATAGTGTCAAA+AGG - chr2_4:18347405-18347424 Msa0319060:five_prime_UTR 25.0%
! TATCTAGTATAGTGTCAAAA+GGG - chr2_4:18347406-18347425 Msa0319060:five_prime_UTR 25.0%
TACTTCTTAGTGGAAAATGT+TGG - chr2_4:18342612-18342631 Msa0319060:three_prime_UTR 30.0%
!!! GGGAGTATCAATTTATGTTT+TGG + chr2_4:18342718-18342737 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr2_4:18342977-18342996 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr2_4:18342743-18342762 Msa0319060:three_prime_UTR 30.0%
GTAGTGTGCAGAATATTAAT+TGG - chr2_4:18342873-18342892 Msa0319060:CDS 30.0%
TGTGCAGAATATTAATTGGA+GGG - chr2_4:18342877-18342896 Msa0319060:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_4:18342977-18342996 Msa0319060:CDS 30.0%
ACAGATCAACACAAACAAAA+TGG - chr2_4:18343039-18343058 Msa0319060:CDS 30.0%
AAAGAAACACAAACTGGTTA+TGG - chr2_4:18343166-18343185 Msa0319060:CDS 30.0%
AGTGTAAAAAGTGATTCAAC+AGG - chr2_4:18343202-18343221 Msa0319060:CDS 30.0%
TAGTTAGTTAGTTAGTTACC+TGG + chr2_4:18343308-18343327 None:intergenic 30.0%
TCTTACTCTTAATTGATCCT+TGG + chr2_4:18343422-18343441 None:intergenic 30.0%
CTGATTCAAACAATCAAAGA+TGG - chr2_4:18343446-18343465 Msa0319060:CDS 30.0%
GAAATGTTTCAGGGTTTAAA+GGG + chr2_4:18343678-18343697 None:intergenic 30.0%
AGAAATGTTTCAGGGTTTAA+AGG + chr2_4:18343679-18343698 None:intergenic 30.0%
!! ACTCTTTGGAATGAAGATAT+TGG - chr2_4:18343817-18343836 Msa0319060:intron 30.0%
CTAAAACTACCAGGATAAAA+AGG + chr2_4:18344157-18344176 None:intergenic 30.0%
GTAAAACAACTAAAACTACC+AGG + chr2_4:18344166-18344185 None:intergenic 30.0%
TGACCTTATTGGTATCAATT+TGG - chr2_4:18344317-18344336 Msa0319060:CDS 30.0%
GTTCCAAATTGATACCAATA+AGG + chr2_4:18344323-18344342 None:intergenic 30.0%
TCTATCACAATAACATGGTT+TGG - chr2_4:18344530-18344549 Msa0319060:intron 30.0%
! AATAACATGGTTTGGAATTG+AGG - chr2_4:18344538-18344557 Msa0319060:intron 30.0%
AATGGCTATAGACCTTTATA+TGG + chr2_4:18344750-18344769 None:intergenic 30.0%
AAATTTCTATGCATTAGTCC+AGG - chr2_4:18344785-18344804 Msa0319060:intron 30.0%
! CAATATTTGTGGATTACCAT+TGG + chr2_4:18344881-18344900 None:intergenic 30.0%
TTATCTTGCGGAAAATTAAC+AGG + chr2_4:18345063-18345082 None:intergenic 30.0%
!! TTTCTGACCATTTTTGTGAA+GGG + chr2_4:18345106-18345125 None:intergenic 30.0%
!! ATTTCTGACCATTTTTGTGA+AGG + chr2_4:18345107-18345126 None:intergenic 30.0%
TCAGAAATATGTGCTTATCT+TGG - chr2_4:18345119-18345138 Msa0319060:CDS 30.0%
ATTGCACTAATTGTGAAACT+AGG + chr2_4:18345271-18345290 None:intergenic 30.0%
GAAATAGAAGATAGTATTGC+AGG + chr2_4:18345311-18345330 None:intergenic 30.0%
CTATCTTCTATTTCGCATAA+CGG - chr2_4:18345317-18345336 Msa0319060:intron 30.0%
!!! TATTTCGCATAACGGATTTT+TGG - chr2_4:18345325-18345344 Msa0319060:intron 30.0%
!! TGTGATATGTCATTGATTTG+AGG - chr2_4:18345417-18345436 Msa0319060:intron 30.0%
! GAACTGTTAATTTTGTAAGG+AGG + chr2_4:18345728-18345747 None:intergenic 30.0%
! CCAGAACTGTTAATTTTGTA+AGG + chr2_4:18345731-18345750 None:intergenic 30.0%
CCTTACAAAATTAACAGTTC+TGG - chr2_4:18345728-18345747 Msa0319060:intron 30.0%
GTTGATCTACTCAAAATGAA+TGG + chr2_4:18345899-18345918 None:intergenic 30.0%
ATCCCTTCAATATTGAACTT+TGG - chr2_4:18345995-18346014 Msa0319060:CDS 30.0%
CAAACATTGATCCTCAAAAT+CGG - chr2_4:18346108-18346127 Msa0319060:CDS 30.0%
TTAGTCTAGTGAAAAAGTTG+TGG + chr2_4:18346141-18346160 None:intergenic 30.0%
!!! AGATCTGTGATTTTTTGCTA+CGG - chr2_4:18346184-18346203 Msa0319060:intron 30.0%
CCATCAGAGTCTTAAAAAAA+GGG + chr2_4:18346309-18346328 None:intergenic 30.0%
TCCATCAGAGTCTTAAAAAA+AGG + chr2_4:18346310-18346329 None:intergenic 30.0%
! ATTTTCCTGAATGTAGTTAG+GGG - chr2_4:18346369-18346388 Msa0319060:CDS 30.0%
ATGTACGAATCAAACACAAA+AGG - chr2_4:18346529-18346548 Msa0319060:CDS 30.0%
TGTACGAATCAAACACAAAA+GGG - chr2_4:18346530-18346549 Msa0319060:CDS 30.0%
CATACTTTCCTAAAGGAAAT+TGG - chr2_4:18346686-18346705 Msa0319060:intron 30.0%
AGATCAAACCAATTTCCTTT+AGG + chr2_4:18346697-18346716 None:intergenic 30.0%
TTTGACATATTTGCCTGATT+CGG + chr2_4:18346746-18346765 None:intergenic 30.0%
!!! GAACTATTGGTTGTTTTTAG+TGG - chr2_4:18346871-18346890 Msa0319060:CDS 30.0%
!!! TTGGTTGTTTTTAGTGGAAA+TGG - chr2_4:18346877-18346896 Msa0319060:CDS 30.0%
AGTGGAAATGGAAATAGTTA+TGG - chr2_4:18346889-18346908 Msa0319060:CDS 30.0%
! AATTTGCTTTGGACCAAAAA+TGG - chr2_4:18347040-18347059 Msa0319060:five_prime_UTR 30.0%
! CCTTTTCTATGATCCATTTT+TGG + chr2_4:18347056-18347075 None:intergenic 30.0%
CCAAAAATGGATCATAGAAA+AGG - chr2_4:18347053-18347072 Msa0319060:five_prime_UTR 30.0%
ATAGAAAAGGTCACATTCTT+GGG - chr2_4:18347066-18347085 Msa0319060:intron 30.0%
CCATTTAACCTACCATAATT+AGG + chr2_4:18347096-18347115 None:intergenic 30.0%
CCTAATTATGGTAGGTTAAA+TGG - chr2_4:18347093-18347112 Msa0319060:intron 30.0%
GAAGACTAAAATAAGGTAGA+AGG - chr2_4:18347266-18347285 Msa0319060:intron 30.0%
! AAGAAAGCACATATTCTTTG+AGG + chr2_4:18347312-18347331 None:intergenic 30.0%
CTTAGTTAAGGTTACTACAA+GGG - chr2_4:18347368-18347387 Msa0319060:five_prime_UTR 30.0%
GTGTGCAGAATATTAATTGG+AGG - chr2_4:18342876-18342895 Msa0319060:CDS 35.0%
!! TAGTGATAGTGGAATGTTTC+TGG + chr2_4:18343086-18343105 None:intergenic 35.0%
! CCAGTTTGTGTTTCTTTTGA+TGG + chr2_4:18343163-18343182 None:intergenic 35.0%
CCATCAAAAGAAACACAAAC+TGG - chr2_4:18343160-18343179 Msa0319060:CDS 35.0%
! AGGAGGATTTGATGAGTTTT+AGG + chr2_4:18343246-18343265 None:intergenic 35.0%
AAAACTCATCAAATCCTCCT+CGG - chr2_4:18343246-18343265 Msa0319060:CDS 35.0%
! TTGAGTTTTGCGAATTTTGG+TGG + chr2_4:18343534-18343553 None:intergenic 35.0%
! TACAGAGAAGCTCTTTTTGA+AGG + chr2_4:18343742-18343761 None:intergenic 35.0%
TCAAAAAGAGCTTCTCTGTA+TGG - chr2_4:18343742-18343761 Msa0319060:intron 35.0%
CAAACCAAACTTTCACTCTT+TGG - chr2_4:18343803-18343822 Msa0319060:intron 35.0%
CATTCCAAAGAGTGAAAGTT+TGG + chr2_4:18343810-18343829 None:intergenic 35.0%
! TGGCTCTCATCCATTTTATT+TGG - chr2_4:18343867-18343886 Msa0319060:intron 35.0%
AAGAAGTAAAACACCATGTG+TGG + chr2_4:18343935-18343954 None:intergenic 35.0%
GGAATGGATGTTGAATATAG+CGG - chr2_4:18343964-18343983 Msa0319060:intron 35.0%
CGTCTTACTTATAAGGTGAT+TGG - chr2_4:18343991-18344010 Msa0319060:CDS 35.0%
CTTACTTATAAGGTGATTGG+TGG - chr2_4:18343994-18344013 Msa0319060:CDS 35.0%
!! TTCATCTCCTGAATTGGTTT+TGG - chr2_4:18344044-18344063 Msa0319060:CDS 35.0%
TACTGATCCAAAACCAATTC+AGG + chr2_4:18344054-18344073 None:intergenic 35.0%
GATCAGTATACTCAGTTCAT+TGG - chr2_4:18344066-18344085 Msa0319060:CDS 35.0%
AGTATACTCAGTTCATTGGT+AGG - chr2_4:18344070-18344089 Msa0319060:CDS 35.0%
GACTTACCAAAAGACCAATA+AGG + chr2_4:18344108-18344127 None:intergenic 35.0%
ACTTCAGCAATGACTGATAT+TGG - chr2_4:18344244-18344263 Msa0319060:intron 35.0%
!! CAATGACTGATATTGGTTCT+CGG - chr2_4:18344251-18344270 Msa0319060:intron 35.0%
!! AATGACTGATATTGGTTCTC+GGG - chr2_4:18344252-18344271 Msa0319060:intron 35.0%
CTGTCAAATTGACACTGATA+AGG - chr2_4:18344390-18344409 Msa0319060:CDS 35.0%
TTGAACAAATTCTCAGGTTC+TGG - chr2_4:18344464-18344483 Msa0319060:CDS 35.0%
!!! TTTTAGAATCCCTTACGTTG+TGG - chr2_4:18344570-18344589 Msa0319060:intron 35.0%
! GAAATTGTGGTTTGCAACAA+CGG + chr2_4:18344602-18344621 None:intergenic 35.0%
AGGCCATTCCTAACTAATTA+GGG + chr2_4:18344701-18344720 None:intergenic 35.0%
TAGGCCATTCCTAACTAATT+AGG + chr2_4:18344702-18344721 None:intergenic 35.0%
GAAAGACAATTGCAATAGAC+TGG + chr2_4:18344826-18344845 None:intergenic 35.0%
! GGTTTTCATCAATGTCGATA+TGG - chr2_4:18344916-18344935 Msa0319060:intron 35.0%
AAGAATGTAAGTGATGTCGA+AGG - chr2_4:18344943-18344962 Msa0319060:CDS 35.0%
ATCTGTCCACATAACTTCAA+GGG + chr2_4:18345001-18345020 None:intergenic 35.0%
TATCTGTCCACATAACTTCA+AGG + chr2_4:18345002-18345021 None:intergenic 35.0%
! GTGGACAGATATTGATTACA+TGG - chr2_4:18345011-18345030 Msa0319060:CDS 35.0%
GTTGATACCCTTCACAAAAA+TGG - chr2_4:18345096-18345115 Msa0319060:CDS 35.0%
TGTGAAACTAGGATAGTGTT+GGG + chr2_4:18345260-18345279 None:intergenic 35.0%
TTGTGAAACTAGGATAGTGT+TGG + chr2_4:18345261-18345280 None:intergenic 35.0%
GCGTTATCAATGACGTATTA+CGG + chr2_4:18345365-18345384 None:intergenic 35.0%
! TTGAGGCAAATTTTGTACAC+AGG - chr2_4:18345434-18345453 Msa0319060:intron 35.0%
AGAAATGGAGTCAACTATCT+AGG - chr2_4:18345521-18345540 Msa0319060:intron 35.0%
TCAACTATCTAGGTGAAGTT+TGG - chr2_4:18345531-18345550 Msa0319060:intron 35.0%
GCCCAAAATTCTTGACTATT+AGG + chr2_4:18345590-18345609 None:intergenic 35.0%
! AATGACATTCTCCCTTTTGA+TGG - chr2_4:18345629-18345648 Msa0319060:intron 35.0%
! GGAACAGTTTTCTCGTTAAT+TGG + chr2_4:18345764-18345783 None:intergenic 35.0%
CCATAATGTAAAGATGTTGC+TGG + chr2_4:18345785-18345804 None:intergenic 35.0%
CCAGCAACATCTTTACATTA+TGG - chr2_4:18345782-18345801 Msa0319060:intron 35.0%
AGAATGCAAAGCAACTAATC+AGG - chr2_4:18345847-18345866 Msa0319060:intron 35.0%
! CAAAATGAATGGCCTTTTAC+CGG + chr2_4:18345888-18345907 None:intergenic 35.0%
! AGATCAACTTTTGTTAGCTC+TGG - chr2_4:18345911-18345930 Msa0319060:intron 35.0%
ACACTACTGAAGAACTATGT+CGG - chr2_4:18346068-18346087 Msa0319060:CDS 35.0%
!!! GATCTGTGATTTTTTGCTAC+GGG - chr2_4:18346185-18346204 Msa0319060:intron 35.0%
! TTTTTGCTACGGGTAAAGAA+AGG - chr2_4:18346195-18346214 Msa0319060:CDS 35.0%
!!! CCCTTTTTTTAAGACTCTGA+TGG - chr2_4:18346306-18346325 Msa0319060:CDS 35.0%
TCTGAATGATCTCTTGCAAA+GGG + chr2_4:18346403-18346422 None:intergenic 35.0%
ATCTGAATGATCTCTTGCAA+AGG + chr2_4:18346404-18346423 None:intergenic 35.0%
TGTAGAAATATGGAAGAAGG+CGG + chr2_4:18346504-18346523 None:intergenic 35.0%
GTGTGTAGAAATATGGAAGA+AGG + chr2_4:18346507-18346526 None:intergenic 35.0%
TCACAGTTTCTATTAGGCAA+AGG - chr2_4:18346616-18346635 Msa0319060:CDS 35.0%
GTTGATGCATACTTTCCTAA+AGG - chr2_4:18346679-18346698 Msa0319060:intron 35.0%
TGCACATTTATGTGATCAGA+TGG + chr2_4:18346778-18346797 None:intergenic 35.0%
GATCACATAAATGTGCATGT+TGG - chr2_4:18346781-18346800 Msa0319060:CDS 35.0%
AACAACCAATAGTTCGAATG+AGG + chr2_4:18346866-18346885 None:intergenic 35.0%
GGACAAGTATATTTGGATGA+TGG - chr2_4:18346910-18346929 Msa0319060:CDS 35.0%
TAGAAGGAGAGAAAGATCAA+TGG - chr2_4:18346947-18346966 Msa0319060:CDS 35.0%
! TGGACACTTGTGAGATTTTA+TGG - chr2_4:18346967-18346986 Msa0319060:CDS 35.0%
CATAGAAAAGGTCACATTCT+TGG - chr2_4:18347065-18347084 Msa0319060:intron 35.0%
TAGAAAAGGTCACATTCTTG+GGG - chr2_4:18347067-18347086 Msa0319060:intron 35.0%
TTCTTGGGGATACCTAATTA+TGG - chr2_4:18347081-18347100 Msa0319060:intron 35.0%
TGAGTGGAATGAATTCAATG+AGG - chr2_4:18347148-18347167 Msa0319060:intron 35.0%
!! GTCTTCTAAGTTTGTTACTG+TGG - chr2_4:18347200-18347219 Msa0319060:intron 35.0%
CCTTAACTAAGGTGAAACAA+GGG + chr2_4:18347359-18347378 None:intergenic 35.0%
ACCTTAACTAAGGTGAAACA+AGG + chr2_4:18347360-18347379 None:intergenic 35.0%
CCTTGTAGTAACCTTAACTA+AGG + chr2_4:18347370-18347389 None:intergenic 35.0%
CCTTAGTTAAGGTTACTACA+AGG - chr2_4:18347367-18347386 Msa0319060:five_prime_UTR 35.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_4:18342981-18343000 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_4:18342981-18343000 Msa0319060:CDS 40.0%
GACACAAAGATTGAGACAGA+AGG + chr2_4:18343113-18343132 None:intergenic 40.0%
! ATCAAATCCTCCTCGGTTTT+TGG - chr2_4:18343253-18343272 Msa0319060:CDS 40.0%
!!! ACATTGCAGTTTTGAGACCA+AGG - chr2_4:18343402-18343421 Msa0319060:CDS 40.0%
ACTCTTGGAATCACTTCTTC+TGG + chr2_4:18343478-18343497 None:intergenic 40.0%
GATGAAGATGATGAGACTCT+TGG + chr2_4:18343493-18343512 None:intergenic 40.0%
GTGAAGATAAGGTCTGAGTT+TGG + chr2_4:18343574-18343593 None:intergenic 40.0%
TGTTGTGGAGTGTGAAGATA+AGG + chr2_4:18343585-18343604 None:intergenic 40.0%
AACCAAATGGAGTTGTGTTG+TGG + chr2_4:18343600-18343619 None:intergenic 40.0%
! AGAGCTTCTCTGTATGGTTT+TGG - chr2_4:18343748-18343767 Msa0319060:intron 40.0%
TCTGATGGAAGAGTGAAAAG+TGG - chr2_4:18343907-18343926 Msa0319060:intron 40.0%
CTGATGGAAGAGTGAAAAGT+GGG - chr2_4:18343908-18343927 Msa0319060:intron 40.0%
TGATGGAAGAGTGAAAAGTG+GGG - chr2_4:18343909-18343928 Msa0319060:intron 40.0%
CGGTGATCGTCTTACTTATA+AGG - chr2_4:18343984-18344003 Msa0319060:CDS 40.0%
CCAAAAGACCAATAAGGCAT+AGG + chr2_4:18344102-18344121 None:intergenic 40.0%
!!! CCTATGCCTTATTGGTCTTT+TGG - chr2_4:18344099-18344118 Msa0319060:CDS 40.0%
! GTCTTTTGGTAAGTCCAACA+TGG - chr2_4:18344113-18344132 Msa0319060:CDS 40.0%
CAAGTGTTTATAGTCAGTCG+TGG - chr2_4:18344197-18344216 Msa0319060:CDS 40.0%
GTTTATAGTCAGTCGTGGAT+CGG - chr2_4:18344202-18344221 Msa0319060:intron 40.0%
CTATCTCAGACGTTACAACA+AGG + chr2_4:18344297-18344316 None:intergenic 40.0%
! GTCTGAGATAGTGACCTTAT+TGG - chr2_4:18344306-18344325 Msa0319060:CDS 40.0%
! AAAGCACCAATGACATCTGA+CGG + chr2_4:18344446-18344465 None:intergenic 40.0%
! GGTGCTTTGAACAAATTCTC+AGG - chr2_4:18344458-18344477 Msa0319060:CDS 40.0%
!! AGGTGTTGAAAACTCAAGTG+TGG - chr2_4:18344666-18344685 Msa0319060:intron 40.0%
TGTTGAAAACTCAAGTGTGG+AGG - chr2_4:18344669-18344688 Msa0319060:intron 40.0%
AGCCCCTAATTAGTTAGGAA+TGG - chr2_4:18344695-18344714 Msa0319060:intron 40.0%
GGCCATTCCTAACTAATTAG+GGG + chr2_4:18344700-18344719 None:intergenic 40.0%
! TGGTGTTAGATTTGAATGCC+TGG + chr2_4:18344806-18344825 None:intergenic 40.0%
GTAACCAACTATGCAAAAGC+TGG - chr2_4:18344970-18344989 Msa0319060:CDS 40.0%
! TATGCCAGCTTTTGCATAGT+TGG + chr2_4:18344977-18344996 None:intergenic 40.0%
TCTGTCCACATAACTTCAAG+GGG + chr2_4:18345000-18345019 None:intergenic 40.0%
TATGTGCTTATCTTGGATCC+AGG - chr2_4:18345126-18345145 Msa0319060:CDS 40.0%
! TGGTGTTAGAATTAGGTACC+TGG + chr2_4:18345147-18345166 None:intergenic 40.0%
CAATTAGTGCAATCCTAGTC+CGG - chr2_4:18345278-18345297 Msa0319060:intron 40.0%
ACGTATGCAACCTATGTTAG+AGG - chr2_4:18345473-18345492 Msa0319060:intron 40.0%
AGCTTGCAAACCTCTAACAT+AGG + chr2_4:18345486-18345505 None:intergenic 40.0%
TCAGGATAGTAAACTTGTCC+AGG + chr2_4:18345557-18345576 None:intergenic 40.0%
!! TTCTCCCTTTTGATGGTCTT+TGG - chr2_4:18345636-18345655 Msa0319060:intron 40.0%
CAAGCCAAAGACCATCAAAA+GGG + chr2_4:18345643-18345662 None:intergenic 40.0%
TCAAGCCAAAGACCATCAAA+AGG + chr2_4:18345644-18345663 None:intergenic 40.0%
! TTTTGTAAGGAGGGTTGTCA+TGG + chr2_4:18345718-18345737 None:intergenic 40.0%
CAAAGCAACTAATCAGGCTT+TGG - chr2_4:18345853-18345872 Msa0319060:intron 40.0%
! TGGTGGATATAACCGGTAAA+AGG - chr2_4:18345873-18345892 Msa0319060:intron 40.0%
AAGTATACAGCTCATTGGAC+AGG - chr2_4:18345935-18345954 Msa0319060:intron 40.0%
!! TGGAATCTTTGGAGTTCCTA+TGG - chr2_4:18346015-18346034 Msa0319060:CDS 40.0%
!! ATCTTTGGAGTTCCTATGGT+TGG - chr2_4:18346019-18346038 Msa0319060:CDS 40.0%
TGTTTATGCGACTGCAATTG+CGG + chr2_4:18346277-18346296 None:intergenic 40.0%
ATCTCTTGCAAAGGGGTAAA+AGG + chr2_4:18346395-18346414 None:intergenic 40.0%
CTGAATGATCTCTTGCAAAG+GGG + chr2_4:18346402-18346421 None:intergenic 40.0%
TCGGGGAATGAAAAGAAAAG+TGG + chr2_4:18346571-18346590 None:intergenic 40.0%
! ACTTTTCTTTTCATTCCCCG+AGG - chr2_4:18346570-18346589 Msa0319060:CDS 40.0%
TTCGTATGTCGTGATATCCT+CGG + chr2_4:18346590-18346609 None:intergenic 40.0%
ATAAATGTGCATGTTGGCGA+AGG - chr2_4:18346787-18346806 Msa0319060:CDS 40.0%
! TGTTGGCGAAGGTAACATTT+TGG - chr2_4:18346798-18346817 Msa0319060:CDS 40.0%
!!! GGTAACATTTTGGCCTTACA+AGG - chr2_4:18346808-18346827 Msa0319060:CDS 40.0%
TGTCATTGCTTCACCTTGTA+AGG + chr2_4:18346824-18346843 None:intergenic 40.0%
CAATGACAACAAAAGCAGCT+CGG - chr2_4:18346836-18346855 Msa0319060:CDS 40.0%
GAACACCTCATTCGAACTAT+TGG - chr2_4:18346858-18346877 Msa0319060:CDS 40.0%
GGTGATTCTCTTGATCTAGA+AGG - chr2_4:18346931-18346950 Msa0319060:CDS 40.0%
TGGGGATACCTAATTATGGT+AGG - chr2_4:18347085-18347104 Msa0319060:intron 40.0%
! AGTGAGTTGAATGTTGTGAG+TGG - chr2_4:18347132-18347151 Msa0319060:intron 40.0%
! CCCTTGTTTCACCTTAGTTA+AGG - chr2_4:18347356-18347375 Msa0319060:five_prime_UTR 40.0%
! GGAGACAAGCTATGTTGACT+AGG + chr2_4:18342657-18342676 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_4:18342980-18342999 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_4:18342980-18342999 Msa0319060:CDS 45.0%
CAGAAGGCTAGTAGTGATAG+TGG + chr2_4:18343097-18343116 None:intergenic 45.0%
AATGTCAGGTCCAAAAACCG+AGG + chr2_4:18343266-18343285 None:intergenic 45.0%
AGGTTGAGAAGTGGAATGTC+AGG + chr2_4:18343280-18343299 None:intergenic 45.0%
TAGTTAGTTACCTGGCACTG+AGG + chr2_4:18343300-18343319 None:intergenic 45.0%
CTCCACAACACAACTCCATT+TGG - chr2_4:18343595-18343614 Msa0319060:CDS 45.0%
! CGCGTGATAGTGAAACCAAA+TGG + chr2_4:18343613-18343632 None:intergenic 45.0%
TCAGGGTTTAAAGGGTCTTC+TGG + chr2_4:18343670-18343689 None:intergenic 45.0%
!! AGCTCTTTTTGAAGGCAGAG+AGG + chr2_4:18343734-18343753 None:intergenic 45.0%
GTGAGAAAGGGTTCATCTGA+TGG - chr2_4:18343892-18343911 Msa0319060:intron 45.0%
!! TGCTGGTTCATCTCCTGAAT+TGG - chr2_4:18344038-18344057 Msa0319060:CDS 45.0%
TCTCAGACGTTACAACAAGG+AGG + chr2_4:18344294-18344313 None:intergenic 45.0%
CACTGATAAGGTCACCTACT+CGG - chr2_4:18344402-18344421 Msa0319060:CDS 45.0%
AAGCACCAATGACATCTGAC+GGG + chr2_4:18344445-18344464 None:intergenic 45.0%
CAGTAGACCACCTTGATAGA+AGG + chr2_4:18344501-18344520 None:intergenic 45.0%
! GTGGTTTGCAACAACGGTTA+CGG + chr2_4:18344596-18344615 None:intergenic 45.0%
GGACAAGCCCCTAATTAGTT+AGG - chr2_4:18344690-18344709 Msa0319060:intron 45.0%
TGTAAGTGATGTCGAAGGTG+TGG - chr2_4:18344948-18344967 Msa0319060:CDS 45.0%
GCATACCCCTTGAAGTTATG+TGG - chr2_4:18344992-18345011 Msa0319060:CDS 45.0%
GTAGTAGCAGAGCTACAACA+TGG - chr2_4:18345218-18345237 Msa0319060:intron 45.0%
TAGTATTGCAGGCACATTGC+CGG + chr2_4:18345300-18345319 None:intergenic 45.0%
TATCTAGGTGAAGTTTGGCC+TGG - chr2_4:18345536-18345555 Msa0319060:intron 45.0%
GGGTTGTCATGGTTTGAATG+TGG + chr2_4:18345707-18345726 None:intergenic 45.0%
! AGCAACTAATCAGGCTTTGG+TGG - chr2_4:18345856-18345875 Msa0319060:intron 45.0%
! CAGGCTTTGGTGGATATAAC+CGG - chr2_4:18345866-18345885 Msa0319060:intron 45.0%
CTGGCAAGTATACAGCTCAT+TGG - chr2_4:18345930-18345949 Msa0319060:intron 45.0%
CAGGAGATAATGCTGCTACA+TGG - chr2_4:18345954-18345973 Msa0319060:intron 45.0%
CATATATCCGCTCCAACCAT+AGG + chr2_4:18346034-18346053 None:intergenic 45.0%
ATGGTTGGAGCGGATATATG+CGG - chr2_4:18346034-18346053 Msa0319060:CDS 45.0%
! GTGGATGCTATCCGATTTTG+AGG + chr2_4:18346122-18346141 None:intergenic 45.0%
AAAGGCCCCTAACTACATTC+AGG + chr2_4:18346377-18346396 None:intergenic 45.0%
AAGGTAAAGCTCTTGCCTGA+TGG + chr2_4:18346434-18346453 None:intergenic 45.0%
TCAGGCAAGAGCTTTACCTT+TGG - chr2_4:18346434-18346453 Msa0319060:intron 45.0%
CAGGCAAGAGCTTTACCTTT+GGG - chr2_4:18346435-18346454 Msa0319060:intron 45.0%
ATGCTGCAACTGAATCCCAA+AGG + chr2_4:18346453-18346472 None:intergenic 45.0%
TCGTATGTCGTGATATCCTC+GGG + chr2_4:18346589-18346608 None:intergenic 45.0%
TCGGCACTCACTGAATTTGA+GGG + chr2_4:18346727-18346746 None:intergenic 45.0%
TTCGGCACTCACTGAATTTG+AGG + chr2_4:18346728-18346747 None:intergenic 45.0%
!! AATTCAGTGAGTGCCGAATC+AGG - chr2_4:18346730-18346749 Msa0319060:intron 45.0%
GACCAATAAGGCATAGGAGC+AGG + chr2_4:18344096-18344115 None:intergenic 50.0%
TGAGTCCCGTCAGATGTCAT+TGG - chr2_4:18344437-18344456 Msa0319060:CDS 50.0%
CCTTGATAGAAGGTCGACTG+TGG + chr2_4:18344491-18344510 None:intergenic 50.0%
CCACAGTCGACCTTCTATCA+AGG - chr2_4:18344488-18344507 Msa0319060:CDS 50.0%
CAGTCGACCTTCTATCAAGG+TGG - chr2_4:18344491-18344510 Msa0319060:CDS 50.0%
GTAGCAGAGCTACAACATGG+CGG - chr2_4:18345221-18345240 Msa0319060:intron 50.0%
TGGAGTTCCTATGGTTGGAG+CGG - chr2_4:18346024-18346043 Msa0319060:CDS 50.0%
TGGAAGAAGGCGGTAACGAA+GGG + chr2_4:18346494-18346513 None:intergenic 50.0%
ATGGAAGAAGGCGGTAACGA+AGG + chr2_4:18346495-18346514 None:intergenic 50.0%
CAAAAGGGACACCAATTGCG+CGG - chr2_4:18346545-18346564 Msa0319060:CDS 50.0%
AAGAAAAGTGGCCGCGCAAT+TGG + chr2_4:18346559-18346578 None:intergenic 50.0%
CGTATGTCGTGATATCCTCG+GGG + chr2_4:18346588-18346607 None:intergenic 50.0%
GTCTCACCTGTGCTACAATC+TGG - chr2_4:18346646-18346665 Msa0319060:CDS 50.0%
ACTGCACCAGATTGTAGCAC+AGG + chr2_4:18346655-18346674 None:intergenic 50.0%
GTCAGGTCCAAAAACCGAGG+AGG + chr2_4:18343263-18343282 None:intergenic 55.0%
! CTGGCACTGAGGTTGAGAAG+TGG + chr2_4:18343289-18343308 None:intergenic 55.0%
CACTTCTCAACCTCAGTGCC+AGG - chr2_4:18343287-18343306 Msa0319060:CDS 55.0%
GTGAAAAGTGGGGCCACACA+TGG - chr2_4:18343919-18343938 Msa0319060:intron 55.0%
GGCCTGCTCCTATGCCTTAT+TGG - chr2_4:18344091-18344110 Msa0319060:CDS 55.0%
CGGTTACGGCCACAACGTAA+GGG + chr2_4:18344582-18344601 None:intergenic 55.0%
ACGGTTACGGCCACAACGTA+AGG + chr2_4:18344583-18344602 None:intergenic 55.0%
CTGAAGAACTATGTCGGCGC+TGG - chr2_4:18346074-18346093 Msa0319060:CDS 55.0%
! ACTATGTCGGCGCTGGATTC+AGG - chr2_4:18346081-18346100 Msa0319060:CDS 55.0%
TAAGGTCACCTACTCGGCCG+TGG - chr2_4:18344408-18344427 Msa0319060:CDS 60.0%
AAGGTCACCTACTCGGCCGT+GGG - chr2_4:18344409-18344428 Msa0319060:CDS 60.0%
GACGGGACTCATCATCCCCA+CGG + chr2_4:18344428-18344447 None:intergenic 60.0%
TGCAGGCACATTGCCGGACT+AGG + chr2_4:18345294-18345313 None:intergenic 60.0%
AGGTCACCTACTCGGCCGTG+GGG - chr2_4:18344410-18344429 Msa0319060:CDS 65.0%
CATCATCCCCACGGCCGAGT+AGG + chr2_4:18344419-18344438 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 18342610 18347467 18342610 ID=Msa0319060;Name=Msa0319060
chr2_4 mRNA 18342610 18347467 18342610 ID=Msa0319060-mRNA-1;Parent=Msa0319060;Name=Msa0319060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|0.55|0.5|1|0.33|0.1|10|157|842
chr2_4 exon 18342610 18342678 18342610 ID=Msa0319060-mRNA-1:exon:6842;Parent=Msa0319060-mRNA-1
chr2_4 exon 18342705 18343692 18342705 ID=Msa0319060-mRNA-1:exon:6841;Parent=Msa0319060-mRNA-1
chr2_4 exon 18343975 18344219 18343975 ID=Msa0319060-mRNA-1:exon:6840;Parent=Msa0319060-mRNA-1
chr2_4 exon 18344274 18344513 18344274 ID=Msa0319060-mRNA-1:exon:6839;Parent=Msa0319060-mRNA-1
chr2_4 exon 18344930 18345160 18344930 ID=Msa0319060-mRNA-1:exon:6838;Parent=Msa0319060-mRNA-1
chr2_4 exon 18345957 18346176 18345957 ID=Msa0319060-mRNA-1:exon:6837;Parent=Msa0319060-mRNA-1
chr2_4 exon 18346186 18346406 18346186 ID=Msa0319060-mRNA-1:exon:6836;Parent=Msa0319060-mRNA-1
chr2_4 exon 18346446 18346666 18346446 ID=Msa0319060-mRNA-1:exon:6835;Parent=Msa0319060-mRNA-1
chr2_4 exon 18346769 18347074 18346769 ID=Msa0319060-mRNA-1:exon:6834;Parent=Msa0319060-mRNA-1
chr2_4 exon 18347349 18347467 18347349 ID=Msa0319060-mRNA-1:exon:6833;Parent=Msa0319060-mRNA-1
chr2_4 five_prime_UTR 18347349 18347467 18347349 ID=Msa0319060-mRNA-1:five_prime_utr;Parent=Msa0319060-mRNA-1
chr2_4 five_prime_UTR 18347020 18347074 18347020 ID=Msa0319060-mRNA-1:five_prime_utr;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18346769 18347019 18346769 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18346446 18346666 18346446 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18346186 18346406 18346186 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18345957 18346176 18345957 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18344930 18345160 18344930 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18344274 18344513 18344274 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18343975 18344219 18343975 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 CDS 18342793 18343692 18342793 ID=Msa0319060-mRNA-1:cds;Parent=Msa0319060-mRNA-1
chr2_4 three_prime_UTR 18342705 18342792 18342705 ID=Msa0319060-mRNA-1:three_prime_utr;Parent=Msa0319060-mRNA-1
chr2_4 three_prime_UTR 18342610 18342678 18342610 ID=Msa0319060-mRNA-1:three_prime_utr;Parent=Msa0319060-mRNA-1
Gene Sequence

>Msa0319060

ATGGTTACAAGTCCAATAACTAAAACCAGAAACATTCCACTATCACTACTAGCCTTCTGTCTCAATCTTTGTGTCATCTTATCACAAACTGTTGCAGATTCACCATCAAAAGAAACACAAACTGGTTATGGCTACACAATCATAAGTGTAAAAAGTGATTCAACAGGAAAATCTTTGTCTGCTAGCCTAAAACTCATCAAATCCTCCTCGGTTTTTGGACCTGACATTCCACTTCTCAACCTCAGTGCCAGTTTTGAGACCAAGGATCAATTAAGAGTAAGAATCACTGATTCAAACAATCAAAGATGGGAAATTCCAGAAGAAGTGATTCCAAGAGTCTCATCATCTTCATCTCTATCTCATCATTTTCGCCACCAAAATTCGCAAAACTCAAAATACATAATTACACATCCAAACTCAGACCTTATCTTCACACTCCACAACACAACTCCATTTGGTTTCACTATCACGCAAGACCCTTTAAACCCTGAAACATTTCTAGTCTTTAAGGAACAGTACTTGCAGCTTTCTTCCTCTCTGCCTTCAAAAAGAGCTTCTCTGTATGGTTTTGGAGAGCATACAAAGAGTTCATTCAAGTTGCAAGCAAACCAAACTTTCACTCTTTGGAATGAAGATATTGGTAGTTCCAATGTTGATGTGAATCTTTATGGCTCTCATCCATTTTATTTGGATGGTTCATCTGATGGAAGAGTGAAAAGTGGGGCCACACATGGTGTTTTACTTCTTAATAGTAATGGAATGGATGTTGAATATAGCGGTGATCGTCTTACTTATAAGGTGATTGGTGGTGTTTTTGATTTGTATTTTTTTGCTGGTTCATCTCCTGAATTGGTTTTGGATCAGTATACTCAGTTCATTGGTAGGCCTGCTCCTATGCCTTATTGGTCTTTTGGTTTTCATCAATGTCGATATGGCTACAAGAATGTAAGTGATGTCGAAGGTGTGGTAACCAACTATGCAAAAGCTGGCATACCCCTTGAAGTTATGTGGACAGATATTGATTACATGGATGCATATAAAGATTTCACACTAGATCCTGTTAATTTTCCGCAAGATAAGATGATAAGTTTTGTTGATACCCTTCACAAAAATGGTCAGAAATATGTGCTTATCTTGGATCCAGTTTACTATCCTGATTTTCTTAATCCTAATAGTCAAGAATTTTGGGCTGAAGAAATCAAATTATTTAATGACATTCTCCCTTTTGATGGTCTTTGGCTTGACATGAATGAGTTATCTAATTTCATAACTTCAAATGACACTCCACATTCAAACCATGACAACCCTCCTTACAAAATTAACAGTTCTGGCGTTCAACGACCAATTAACGAGAAAACTGTTCCAGCAACATCTTTACATTATGCAACTAATCAGGCTTTGGTGGATATAACCGGTAAAAGGCCATTCATTTTGAGTAGATCAACTTTTGTTAGCTCTGGCAAGTATACAGCTCATTGGACAGGAGATAATGCTGCTACATGGAATGATTTAGCATACTCAATCCCTTCAATATTGAACTTTGGAATCTTTGGAGTTCCTATGGTTGGAGCGGATATATGCGGCTTCTCAGCAGACACTACTGAAGAACTATGTCGGCGCTGGATTCAGTTAGGGGCCTTTTACCCCTTTGCAAGAGATCATTCAGATAAAAATTCCATCAGGCAAGAGCTTTACCTTTGGGATTCAGTTGCAGCATCAGCTCGAAAAGTGCTTGCCCTTCGTTACCGCCTTCTTCCATATTTCTACACACTAATGTACGAATCAAACACAAAAGGGACACCAATTGCGCGGCCACTTTTCTTTTCATTCCCCGAGGATATCACGACATACGAAATAAACTCACAGTTTCTATTAGGCAAAGGTGTTCTAGTCTCACCTGTGCTACAATCTGGTGCAGTTACTGTTGATGCATACTTTCCTAAAGGAAATTGGTTTGATCTCTTTAATCCCTCAAATTCAGTGAGTGCCGAATCAGGCAAATATGTCAAACTTGATGCACCATCTGATCACATAAATGTGCATGTTGGCGAAGGTAACATTTTGGCCTTACAAGGTGAAGCAATGACAACAAAAGCAGCTCGGAACACCTCATTCGAACTATTGGTTGTTTTTAGTGGAAATGGAAATAGTTATGGACAAGTATATTTGGATGATGGTGATTCTCTTGATCTAGAAGGAGAGAAAGATCAATGGACACTTGTGAGATTTTATGGTGCACTGTATAATGATAGTGTTTCTGTTACTTCTAATGTTACTAATGGAAAATTTGCTTTGGACCAAAAATGGATCATAGAAAAGGTCACATTCTTGGGGATACCTAATTATGGTAGGTTAAATGGAAATGATTTGGCTGAGAGTGAGTTGAATGTTGTGAGTGGAATGAATTCAATGAGGAAAAGAGTTTTGATCACAAAATTTGATAGGTCTTCTAAGTTTGTTACTGTGGAAGTTTCAAATTTAAAACAGCTTATAGGAGAGCAGTTTGAACTGAAGACTAAAATAAGGTAG
Protein sequence

>Msa0319060

MVTSPITKTRNIPLSLLAFCLNLCVILSQTVADSPSKETQTGYGYTIISVKSDSTGKSLSASLKLIKSSSVFGPDIPLLNLSASFETKDQLRVRITDSNNQRWEIPEEVIPRVSSSSSLSHHFRHQNSQNSKYIITHPNSDLIFTLHNTTPFGFTITQDPLNPETFLVFKEQYLQLSSSLPSKRASLYGFGEHTKSSFKLQANQTFTLWNEDIGSSNVDVNLYGSHPFYLDGSSDGRVKSGATHGVLLLNSNGMDVEYSGDRLTYKVIGGVFDLYFFAGSSPELVLDQYTQFIGRPAPMPYWSFGFHQCRYGYKNVSDVEGVVTNYAKAGIPLEVMWTDIDYMDAYKDFTLDPVNFPQDKMISFVDTLHKNGQKYVLILDPVYYPDFLNPNSQEFWAEEIKLFNDILPFDGLWLDMNELSNFITSNDTPHSNHDNPPYKINSSGVQRPINEKTVPATSLHYATNQALVDITGKRPFILSRSTFVSSGKYTAHWTGDNAATWNDLAYSIPSILNFGIFGVPMVGADICGFSADTTEELCRRWIQLGAFYPFARDHSDKNSIRQELYLWDSVAASARKVLALRYRLLPYFYTLMYESNTKGTPIARPLFFSFPEDITTYEINSQFLLGKGVLVSPVLQSGAVTVDAYFPKGNWFDLFNPSNSVSAESGKYVKLDAPSDHINVHVGEGNILALQGEAMTTKAARNTSFELLVVFSGNGNSYGQVYLDDGDSLDLEGEKDQWTLVRFYGALYNDSVSVTSNVTNGKFALDQKWIIEKVTFLGIPNYGRLNGNDLAESELNVVSGMNSMRKRVLITKFDRSSKFVTVEVSNLKQLIGEQFELKTKIR*