AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404840 MtrunA17_Chr3g0095221 97.783 451 10 0 1 451 1 451 0.0 900
Msa0404840 MtrunA17_Chr5g0442221 77.727 440 95 3 14 450 10 449 0.0 689
Msa0404840 MtrunA17_Chr7g0270821 50.901 444 210 4 10 449 4 443 2.19e-155 448
Msa0404840 MtrunA17_Chr1g0193961 51.724 435 204 2 8 442 6 434 2.30e-155 448
Msa0404840 MtrunA17_Chr3g0130251 47.009 468 216 6 1 442 8 469 3.89e-143 417
Msa0404840 MtrunA17_Chr4g0067811 48.883 403 203 2 40 441 33 433 2.45e-140 410
Msa0404840 MtrunA17_Chr2g0295241 49.751 402 191 3 43 439 33 428 2.66e-140 409
Msa0404840 MtrunA17_Chr8g0387391 50.125 401 198 2 43 442 40 439 1.53e-138 405
Msa0404840 MtrunA17_Chr1g0202651 49.005 402 203 2 43 443 51 451 3.13e-137 402
Msa0404840 MtrunA17_Chr7g0255311 47.191 445 218 4 16 443 18 462 7.36e-137 402
Msa0404840 MtrunA17_Chr7g0248451 49.144 409 203 3 43 447 51 458 2.59e-133 393
Msa0404840 MtrunA17_Chr8g0348491 48.878 401 203 2 43 442 51 450 2.80e-132 390
Msa0404840 MtrunA17_Chr1g0202641 48.259 402 206 2 43 443 51 451 2.04e-127 392
Msa0404840 MtrunA17_Chr1g0202641 47.291 406 212 2 43 447 551 955 2.42e-123 382
Msa0404840 MtrunA17_Chr4g0070281 46.462 424 217 7 36 451 60 481 2.59e-123 367
Msa0404840 MtrunA17_Chr1g0202621 45.025 402 213 3 43 443 44 438 2.15e-120 359
Msa0404840 MtrunA17_Chr2g0301091 49.593 369 184 2 41 407 50 418 1.19e-119 357
Msa0404840 MtrunA17_Chr2g0319881 46.023 176 90 1 13 183 4 179 1.96e-42 148
Msa0404840 MtrunA17_Chr6g0449961 27.826 345 200 11 16 350 17 322 3.06e-27 113
Msa0404840 MtrunA17_Chr3g0121891 26.260 377 227 13 19 383 4 341 5.12e-25 106
Msa0404840 MtrunA17_Chr5g0413141 25.185 405 258 10 39 429 51 424 1.89e-23 102
Msa0404840 MtrunA17_Chr5g0418411 27.195 353 210 9 12 357 6 318 3.49e-23 100
Msa0404840 MtrunA17_Chr4g0043661 29.801 302 172 10 48 341 24 293 6.31e-23 100
Msa0404840 MtrunA17_Chr3g0121881 27.027 407 241 14 46 436 32 398 7.45e-23 100
Msa0404840 MtrunA17_Chr6g0461181 25.169 445 263 16 38 440 21 437 6.98e-22 97.4
Msa0404840 MtrunA17_Chr3g0089021 25.377 398 252 13 23 410 50 412 1.18e-19 90.9
Msa0404840 MtrunA17_Chr2g0332801 28.065 310 177 9 47 343 59 335 1.49e-19 90.9
Msa0404840 MtrunA17_Chr8g0337571 24.776 335 206 9 16 343 4 299 2.55e-19 89.4
Msa0404840 MtrunA17_Chr4g0020771 25.323 387 231 14 47 414 74 421 5.19e-19 89.0
Msa0404840 MtrunA17_Chr4g0043431 27.838 370 224 14 48 407 36 372 1.02e-18 87.8
Msa0404840 MtrunA17_Chr6g0468871 53.947 76 34 1 240 314 22 97 1.14e-18 80.9
Msa0404840 MtrunA17_Chr3g0100091 30.412 194 119 4 150 341 77 256 8.27e-18 84.7
Msa0404840 MtrunA17_Chr1g0194231 24.816 407 258 14 47 435 81 457 9.64e-18 85.5
Msa0404840 MtrunA17_Chr7g0258111 25.890 309 189 8 46 341 47 328 1.10e-17 85.1
Msa0404840 MtrunA17_Chr4g0052621 24.408 422 274 13 39 444 56 448 1.40e-17 84.7
Msa0404840 MtrunA17_Chr8g0365891 24.439 401 232 12 46 408 106 473 1.52e-17 85.1
Msa0404840 MtrunA17_Chr1g0173451 23.116 398 257 14 46 433 75 433 2.44e-17 84.0
Msa0404840 MtrunA17_Chr2g0319871 57.812 64 27 0 189 252 1 64 2.95e-17 76.3
Msa0404840 MtrunA17_Chr4g0018151 26.328 433 268 17 14 436 48 439 3.16e-17 83.6
Msa0404840 MtrunA17_Chr5g0413411 25.146 342 183 13 48 350 122 429 5.49e-17 83.2
Msa0404840 MtrunA17_Chr7g0270361 24.886 438 273 14 30 450 59 457 6.30e-17 82.8
Msa0404840 MtrunA17_Chr2g0332971 26.129 310 180 10 46 339 27 303 1.36e-16 81.3
Msa0404840 MtrunA17_Chr1g0150291 25.962 416 252 17 45 450 43 412 4.00e-16 80.1
Msa0404840 MtrunA17_Chr1g0195221 26.875 320 178 10 49 350 37 318 5.02e-16 79.7
Msa0404840 MtrunA17_Chr7g0230891 25.610 410 223 18 46 428 36 390 6.83e-16 79.3
Msa0404840 MtrunA17_Chr2g0293681 26.887 212 130 4 152 350 157 356 1.10e-15 79.0
Msa0404840 MtrunA17_Chr2g0303941 27.036 307 183 9 44 340 25 300 1.40e-15 78.2
Msa0404840 MtrunA17_Chr8g0365901 23.810 378 246 13 47 413 65 411 2.54e-15 77.8
Msa0404840 MtrunA17_Chr7g0257701 27.778 198 122 5 150 343 188 368 9.98e-15 75.9
Msa0404840 MtrunA17_Chr8g0337581 26.384 307 177 10 48 343 32 300 1.06e-14 75.5
Msa0404840 MtrunA17_Chr8g0336481 30.457 197 113 5 160 350 51 229 4.12e-14 72.4
Msa0404840 MtrunA17_Chr1g0150301 24.682 393 257 12 45 431 25 384 8.88e-14 72.8
Msa0404840 MtrunA17_Chr4g0067631 23.167 341 193 10 47 345 52 365 9.72e-13 69.7
Msa0404840 MtrunA17_Chr7g0257721 24.306 288 174 12 47 323 76 330 3.35e-12 67.4
Msa0404840 MtrunA17_Chr1g0149241 24.629 337 206 14 15 340 4 303 8.36e-12 66.6
Msa0404840 MtrunA17_Chr7g0228411 23.158 380 232 11 40 388 33 383 1.48e-11 66.2
Msa0404840 MtrunA17_Chr2g0291841 37.500 128 70 5 160 280 91 215 8.14e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404840 AT4G23820.1 76.102 431 99 2 11 441 7 433 0.0 685
Msa0404840 AT5G41870.1 68.694 444 133 3 11 451 9 449 0.0 624
Msa0404840 AT3G62110.1 51.740 431 205 3 4 433 1 429 1.72e-157 454
Msa0404840 AT3G62110.2 51.740 431 205 3 4 433 1 429 1.72e-157 454
Msa0404840 AT4G33440.1 52.246 423 193 5 33 451 56 473 5.81e-142 415
Msa0404840 AT3G16850.1 48.046 435 220 4 14 447 7 436 1.04e-137 403
Msa0404840 AT3G48950.1 44.954 436 234 4 13 443 8 442 6.91e-135 397
Msa0404840 AT3G61490.2 48.010 402 207 2 43 443 41 441 3.71e-132 390
Msa0404840 AT3G61490.3 48.010 402 207 2 43 443 41 441 3.71e-132 390
Msa0404840 AT3G61490.1 48.010 402 207 2 43 443 41 441 3.71e-132 390
Msa0404840 AT3G61490.5 48.010 402 207 2 43 443 56 456 4.52e-132 390
Msa0404840 AT3G61490.4 48.010 402 207 2 43 443 154 554 1.30e-131 392
Msa0404840 AT4G23500.1 46.914 405 213 2 43 446 64 467 2.87e-127 378
Msa0404840 AT2G23900.1 44.218 441 238 5 14 447 19 458 5.70e-126 374
Msa0404840 AT5G49215.1 45.137 401 219 1 42 441 38 438 4.81e-121 360
Msa0404840 AT5G49215.2 45.137 401 219 1 42 441 36 436 4.86e-121 360
Msa0404840 AT3G42950.1 46.099 423 222 6 20 439 40 459 7.38e-118 353
Msa0404840 AT3G06770.5 45.025 402 210 3 43 439 40 435 3.60e-117 350
Msa0404840 AT3G06770.2 45.025 402 210 3 43 439 39 434 3.76e-117 350
Msa0404840 AT1G19170.1 46.535 404 210 6 41 440 81 482 3.19e-114 345
Msa0404840 AT3G06770.1 44.809 366 191 3 79 439 6 365 1.03e-103 313
Msa0404840 AT3G06770.3 44.809 366 191 3 79 439 6 365 1.03e-103 313
Msa0404840 AT3G06770.4 42.769 325 175 3 120 439 29 347 5.64e-86 268
Msa0404840 AT3G15720.3 29.976 417 229 16 44 441 20 392 2.41e-29 119
Msa0404840 AT3G15720.1 29.976 417 229 16 44 441 21 393 2.51e-29 119
Msa0404840 AT2G41850.1 28.723 376 224 13 46 409 67 410 1.81e-28 117
Msa0404840 AT3G15720.2 29.976 417 226 17 44 441 20 389 2.27e-27 114
Msa0404840 AT3G15720.4 31.250 336 181 13 123 441 27 329 6.24e-26 109
Msa0404840 AT5G17200.1 30.744 309 174 10 47 350 39 312 3.03e-25 107
Msa0404840 AT3G57510.1 25.708 424 264 13 8 420 38 421 1.05e-23 103
Msa0404840 AT5G14650.1 26.705 352 220 11 1 343 1 323 1.84e-23 102
Msa0404840 AT1G56710.1 25.974 462 286 17 8 444 2 432 1.84e-23 102
Msa0404840 AT3G57790.2 28.754 313 181 9 46 341 34 321 3.13e-23 102
Msa0404840 AT3G57790.1 28.754 313 181 9 46 341 34 321 3.13e-23 102
Msa0404840 AT3G26610.1 25.330 379 236 11 48 412 68 413 2.40e-22 99.8
Msa0404840 AT5G14650.2 26.506 332 206 11 1 323 1 303 1.67e-20 92.4
Msa0404840 AT1G10640.1 23.798 416 255 12 44 426 116 502 2.33e-20 94.0
Msa0404840 AT1G02460.1 25.240 416 264 12 48 444 90 477 1.32e-19 91.7
Msa0404840 AT1G60590.1 23.342 377 218 11 48 385 124 468 2.07e-19 91.3
Msa0404840 AT5G27530.1 25.694 432 250 15 8 428 28 399 4.03e-19 90.1
Msa0404840 AT4G35670.1 28.354 328 185 10 34 350 15 303 4.04e-19 89.4
Msa0404840 AT2G43870.1 27.467 375 214 13 16 383 4 327 4.59e-19 89.0
Msa0404840 AT4G32375.1 31.220 205 120 4 150 350 19 206 6.02e-19 89.0
Msa0404840 AT3G59850.2 27.470 415 243 14 44 447 64 431 8.79e-19 88.6
Msa0404840 AT3G59850.1 28.000 375 225 12 44 407 20 360 1.15e-18 87.8
Msa0404840 AT1G70500.1 25.255 392 248 12 47 427 67 424 1.37e-18 88.2
Msa0404840 AT3G07970.1 29.386 228 142 4 160 380 167 382 1.62e-18 87.8
Msa0404840 AT4G32380.1 32.735 223 121 7 148 366 116 313 3.01e-18 87.4
Msa0404840 AT1G23460.2 25.000 384 245 13 41 412 36 388 5.18e-18 86.3
Msa0404840 AT5G44840.1 26.753 385 246 12 49 428 26 379 5.41e-18 85.9
Msa0404840 AT4G35670.2 33.171 205 117 5 150 350 8 196 5.88e-18 84.3
Msa0404840 AT1G23460.1 25.000 384 245 13 41 412 60 412 5.94e-18 86.3
Msa0404840 AT2G43890.1 24.242 429 261 14 15 431 9 385 4.10e-17 83.2
Msa0404840 AT2G15470.1 24.153 443 273 14 12 436 5 402 5.69e-17 83.2
Msa0404840 AT2G15460.1 24.138 435 268 13 12 429 5 394 1.16e-16 82.0
Msa0404840 AT5G39910.1 25.595 336 192 10 13 340 10 295 1.40e-16 81.6
Msa0404840 AT1G48100.1 22.760 413 271 12 49 444 82 463 1.81e-16 82.0
Msa0404840 AT2G43880.1 27.666 347 211 12 42 381 26 339 2.01e-16 81.3
Msa0404840 AT2G15450.1 24.153 443 273 14 12 436 5 402 2.37e-16 81.3
Msa0404840 AT2G43880.2 27.356 329 195 11 42 365 26 315 2.49e-16 80.1
Msa0404840 AT1G02790.1 27.469 324 190 11 8 323 15 301 2.89e-16 80.9
Msa0404840 AT2G26620.1 24.079 407 263 12 43 436 27 400 3.76e-16 80.5
Msa0404840 AT1G80170.1 23.039 408 259 13 47 436 53 423 6.56e-16 80.1
Msa0404840 AT2G40310.1 24.020 408 264 13 43 436 27 402 8.39e-16 79.3
Msa0404840 AT5G44830.1 29.348 276 158 9 160 428 75 320 1.01e-15 78.6
Msa0404840 AT4G32380.2 34.444 180 97 6 148 323 116 278 2.32e-15 78.2
Msa0404840 AT1G80140.1 27.500 240 147 6 148 383 59 275 4.32e-15 76.6
Msa0404840 AT1G43080.1 24.661 442 278 15 8 436 3 402 6.71e-15 76.6
Msa0404840 AT4G01890.1 25.705 319 194 10 49 350 67 359 9.10e-15 76.6
Msa0404840 AT1G05650.1 27.652 264 165 8 160 413 122 369 1.20e-14 75.9
Msa0404840 AT1G43090.1 24.594 431 271 14 8 426 3 391 2.42e-14 75.1
Msa0404840 AT4G32370.1 31.500 200 113 6 149 339 123 307 2.59e-14 74.3
Msa0404840 AT1G78400.1 24.190 401 256 14 49 436 37 402 2.96e-14 74.7
Msa0404840 AT1G17150.1 25.121 414 248 16 43 436 29 400 4.77e-14 73.9
Msa0404840 AT1G65570.1 26.282 312 196 11 15 323 3 283 9.23e-14 73.2
Msa0404840 AT1G05660.1 24.344 419 253 17 9 413 1 369 9.95e-14 73.2
Msa0404840 AT1G43100.1 24.362 431 272 14 8 426 3 391 1.87e-13 72.4
Msa0404840 AT4G13760.1 24.029 412 259 14 43 436 27 402 1.88e-13 72.4
Msa0404840 AT3G14040.1 24.163 418 256 12 46 444 70 445 2.28e-13 72.4
Msa0404840 AT4G18180.1 31.944 216 119 8 138 343 119 316 6.27e-13 70.9
Msa0404840 AT3G07850.1 23.499 383 236 11 81 444 100 444 1.43e-12 69.7
Msa0404840 AT2G43860.1 26.316 399 253 16 46 436 32 397 3.06e-11 65.5
Msa0404840 AT2G33160.1 24.703 421 249 16 9 408 1 374 4.26e-11 65.5

Find 150 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGATGATAAAGTGTTTA+TGG 0.102835 3_2:+37728839 None:intergenic
ATTTGAAATAATAATATTTC+TGG 0.187682 3_2:+37725011 None:intergenic
TGTCCGATATGTCACGATTT+TGG 0.231140 3_2:-37724798 Msa0404840:CDS
CAAAGGATGTAAATGATTTA+AGG 0.231375 3_2:+37728954 None:intergenic
CATTCAGGGCAGCTATTTAT+AGG 0.235860 3_2:-37728557 Msa0404840:CDS
TTCTATGATATTAACCTTCA+TGG 0.242349 3_2:-37722624 Msa0404840:CDS
CGTTGAACTCAAAGGCATTC+AGG 0.260178 3_2:-37728572 Msa0404840:CDS
TCTTCATTCTTTAGAGGTTA+TGG 0.263528 3_2:-37725780 Msa0404840:intron
AGAAATAGGAGAAGAAAATA+AGG 0.274211 3_2:+37728703 None:intergenic
ACATATCGCTCATGAATAAT+TGG 0.275158 3_2:+37722485 None:intergenic
ATTGCACCTTTACCATCTTA+TGG 0.281917 3_2:-37725745 Msa0404840:CDS
TTTATAGGATTCAGCACTTA+AGG 0.299188 3_2:-37728542 Msa0404840:CDS
GGCAGAGATATAAGAGAAAT+AGG 0.302082 3_2:+37728689 None:intergenic
TAGAAACAAATCTCAGTAAA+AGG 0.304924 3_2:+37722642 None:intergenic
GATGGTAAAGGTGCAATTAA+AGG 0.313514 3_2:+37725751 None:intergenic
TTCTTTAGAGGTTATGGAAT+TGG 0.313836 3_2:-37725774 Msa0404840:intron
TTCACAACTGGTAGAGCATT+AGG 0.314497 3_2:+37722738 None:intergenic
GAATTACAATTAAGAGTGTT+TGG 0.330158 3_2:-37722713 Msa0404840:CDS
ACGATTTCCATAACCGATTT+CGG 0.346257 3_2:-37728615 Msa0404840:CDS
AATTACAATTAAGAGTGTTT+GGG 0.348788 3_2:-37722712 Msa0404840:CDS
AGAGTAAAATCGGTAATTTC+AGG 0.365218 3_2:+37722288 None:intergenic
TCACAACTGGTAGAGCATTA+GGG 0.385260 3_2:+37722739 None:intergenic
ATCACGATCCGACGTATAAC+CGG 0.387708 3_2:-37722996 Msa0404840:CDS
AGGCAAGGAATTAAAATTGC+TGG 0.387934 3_2:-37722795 Msa0404840:CDS
GGTGAGAATGGAACAATTGA+TGG 0.402464 3_2:-37725114 Msa0404840:CDS
AGGAAGAGGAGGAAAGTTGA+GGG 0.413827 3_2:+37728723 None:intergenic
GAGGAGGAAAGTTGAGGGGA+TGG 0.420793 3_2:+37728728 None:intergenic
CCTACGGCAATGCCGGCAAA+TGG 0.426213 3_2:+37722966 None:intergenic
GACACCGCCGAAATCGGTTA+TGG 0.431442 3_2:+37728608 None:intergenic
ATGACTCTTTATCTTGCTGC+TGG 0.433521 3_2:-37728447 Msa0404840:CDS
TCATATTCCACAACATGTTC+CGG 0.439214 3_2:-37728666 Msa0404840:CDS
ATTGTAATTCCCTTCACAAC+TGG 0.439300 3_2:+37722726 None:intergenic
ATACTTGAAGAGAGTAAAAT+CGG 0.439914 3_2:+37722278 None:intergenic
GGGTCAATTCCATCAGTGTT+AGG 0.443337 3_2:+37724761 None:intergenic
TTGCAAGCTGGTTTGATACA+TGG 0.446222 3_2:-37722678 Msa0404840:CDS
CTTCATGGTGAGACGGGATC+AGG 0.446473 3_2:-37722609 Msa0404840:CDS
AGCTGAGCAGCCAAGAGCCT+GGG 0.448563 3_2:-37722515 Msa0404840:CDS
GTCGCCGACACCGCCGAAAT+CGG 0.451079 3_2:+37728602 None:intergenic
ACCGGATCGTCTCCATTTGC+CGG 0.454556 3_2:-37722978 Msa0404840:CDS
GAGCCAAAATCGTGACATAT+CGG 0.457475 3_2:+37724795 None:intergenic
CGGCTAAGGAGGTGATTCAT+TGG 0.459797 3_2:+37722166 None:intergenic
GAGGACTCATACATATCAAC+AGG 0.465287 3_2:-37723089 Msa0404840:CDS
TTCCAATGTTTGTCTTAATG+TGG 0.470222 3_2:+37722871 None:intergenic
ATTAAAATTGCTGGTGATGT+AGG 0.474167 3_2:-37722786 Msa0404840:CDS
ACACACCAGGAGGCACATAA+AGG 0.475424 3_2:+37728502 None:intergenic
CAGCTGAGCAGCCAAGAGCC+TGG 0.477571 3_2:-37722516 Msa0404840:CDS
GTTGAACTCAAAGGCATTCA+GGG 0.483818 3_2:-37728571 Msa0404840:CDS
CACTATGCCGGAACATGTTG+TGG 0.484354 3_2:+37728659 None:intergenic
CGCGACTCTCCTAACACTGA+TGG 0.487424 3_2:-37724770 Msa0404840:CDS
TGCCGGTGTCCTGTTGTGTT+CGG 0.488347 3_2:-37722341 Msa0404840:three_prime_UTR
ATACAGACACCGAACACAAC+AGG 0.490481 3_2:+37722332 None:intergenic
TAAGAGTGTTTGGGGTGTGA+AGG 0.492885 3_2:-37722703 Msa0404840:CDS
TTCACTGCCTACGGCAATGC+CGG 0.494196 3_2:+37722959 None:intergenic
GCCTCCTGGTGTGTACTTAA+CGG 0.495904 3_2:-37728493 Msa0404840:CDS
GCACTGACACTTCAGATTGA+AGG 0.496163 3_2:-37722461 Msa0404840:three_prime_UTR
ATTAACCTTCATGGTGAGAC+GGG 0.496388 3_2:-37722615 Msa0404840:CDS
ATGTGTATATAGAAAATTCA+AGG 0.496847 3_2:-37722815 Msa0404840:CDS
TCCCTTCCTCTTCCATAAGA+TGG 0.498572 3_2:+37725733 None:intergenic
CCTTTACCATCTTATGGAAG+AGG 0.498720 3_2:-37725739 Msa0404840:CDS
AAACTGATATACCTTCCTCC+TGG 0.504242 3_2:+37725706 None:intergenic
GTGTCGGAACGGCACTATGC+CGG 0.505281 3_2:+37728647 None:intergenic
TTTCACAAAAGGTTAGTCCT+TGG 0.506890 3_2:-37722548 Msa0404840:CDS
CACCGAACACAACAGGACAC+CGG 0.508803 3_2:+37722339 None:intergenic
GCCGGCAAATGGAGACGATC+CGG 0.511985 3_2:+37722977 None:intergenic
ACCTGATGTTTCACTGCCTA+CGG 0.519201 3_2:+37722950 None:intergenic
AGGAGAAGAAAATAAGGAAG+AGG 0.519954 3_2:+37728709 None:intergenic
ACGCTCCTTTATGTGCCTCC+TGG 0.523955 3_2:-37728507 Msa0404840:CDS
TGCTGTTGTAGCTAGAAGCT+AGG 0.524418 3_2:+37728787 None:intergenic
AAGGAAGAGGAGGAAAGTTG+AGG 0.524967 3_2:+37728722 None:intergenic
ATCCACATTAAGACAAACAT+TGG 0.527637 3_2:-37722873 Msa0404840:CDS
TTGTGGCTGTGAAGAGTGGA+TGG 0.529310 3_2:-37723058 Msa0404840:CDS
TGGTACAAGACCCAGGCTCT+TGG 0.531741 3_2:+37722505 None:intergenic
CCATTTGCCGGCATTGCCGT+AGG 0.539892 3_2:-37722966 Msa0404840:CDS
CCTCTTCCATAAGATGGTAA+AGG 0.544572 3_2:+37725739 None:intergenic
AATCGGTAATTTCAGGACTC+AGG 0.547413 3_2:+37722295 None:intergenic
GATTTCGGCGGTGTCGGCGA+CGG 0.548162 3_2:-37728600 Msa0404840:CDS
AACCTCTTCAACATGGGAGT+TGG 0.548570 3_2:-37722897 Msa0404840:CDS
TACCATCTTATGGAAGAGGA+AGG 0.549191 3_2:-37725735 Msa0404840:CDS
ATTAAGACAAACATTGGAAG+AGG 0.549285 3_2:-37722867 Msa0404840:CDS
AAATCGTGTCGGCGCGGTGT+CGG 0.549772 3_2:+37728631 None:intergenic
TTGAATTGTCAGTAATATGT+TGG 0.550125 3_2:+37722419 None:intergenic
GCCGTAGGCAGTGAAACATC+AGG 0.551782 3_2:-37722951 Msa0404840:CDS
TGGCTGCTCAGCTGAGAACA+TGG 0.555382 3_2:+37722525 None:intergenic
TCGTGATGCCATTGCTAGGA+CGG 0.555883 3_2:+37723012 None:intergenic
AGAAGAAAATAAGGAAGAGG+AGG 0.558917 3_2:+37728712 None:intergenic
ATAACCGATTTCGGCGGTGT+CGG 0.559095 3_2:-37728606 Msa0404840:CDS
TATATAGAAAATTCAAGGCA+AGG 0.561312 3_2:-37722810 Msa0404840:CDS
TATTAACGATTTCTTCGTGC+CGG 0.564758 3_2:-37722358 Msa0404840:three_prime_UTR
AACTGGATGTATATTCCAGA+AGG 0.565675 3_2:+37724969 None:intergenic
AACTGATATACCTTCCTCCT+GGG 0.566298 3_2:+37725707 None:intergenic
AAGAGTGGATGGGATGAATA+CGG 0.568218 3_2:-37723047 Msa0404840:CDS
CGGATCGTGATGCCATTGCT+AGG 0.571230 3_2:+37723008 None:intergenic
ATATACATCCAGTTTACTGC+AGG 0.571488 3_2:-37724960 Msa0404840:intron
CTGATCCCGTCTCACCATGA+AGG 0.572907 3_2:+37722610 None:intergenic
GTGTCGGCGCGGTGTCGGAA+CGG 0.576004 3_2:+37728636 None:intergenic
TAATGCTCTACCAGTTGTGA+AGG 0.579332 3_2:-37722736 Msa0404840:CDS
GTTGAAGAGGTTGATATGCT+CGG 0.579619 3_2:+37722908 None:intergenic
ATTACAATTAAGAGTGTTTG+GGG 0.579707 3_2:-37722711 Msa0404840:CDS
CTCTCCGTTAAGTACACACC+AGG 0.580616 3_2:+37728489 None:intergenic
TGCTGTTATTAAAGCCACAC+AGG 0.582451 3_2:-37728424 Msa0404840:intron
CATATCAACCTCTTCAACAT+GGG 0.583118 3_2:-37722903 Msa0404840:CDS
GTTCGCGATGTGATCATCAC+AGG 0.583823 3_2:-37725667 Msa0404840:intron
CTCAGCTGAGAACATGGCCA+AGG 0.585760 3_2:+37722531 None:intergenic
GAAGGGAGCTCCCAGGAGGA+AGG 0.586526 3_2:-37725717 Msa0404840:CDS
AAGTTCAAATGTCTGCATAG+AGG 0.586689 3_2:-37723108 Msa0404840:CDS
GGAACATGTTGTGGAATATG+AGG 0.586776 3_2:+37728668 None:intergenic
GCATATCAACCTCTTCAACA+TGG 0.588468 3_2:-37722904 Msa0404840:CDS
TGGTGATGTAGGTGACCATC+CGG 0.592460 3_2:-37722775 Msa0404840:CDS
TACCAACTCCCATGTTGAAG+AGG 0.592901 3_2:+37722895 None:intergenic
AATGGAACAATTGATGGGCA+AGG 0.593507 3_2:-37725108 Msa0404840:CDS
TATTAACCTTCATGGTGAGA+CGG 0.595986 3_2:-37722616 Msa0404840:CDS
GGAAGAGGAGGAAAGTTGAG+GGG 0.596179 3_2:+37728724 None:intergenic
CGGCAGAACGTTGAACTCAA+AGG 0.598960 3_2:-37728580 Msa0404840:CDS
ACCATCTTATGGAAGAGGAA+GGG 0.599680 3_2:-37725734 Msa0404840:CDS
GGAAGAGGAAGGGAGCTCCC+AGG 0.601338 3_2:-37725724 Msa0404840:CDS
GATGAATACGGTATTTCATA+CGG 0.605569 3_2:-37723035 Msa0404840:CDS
AAGCTAGGTGGAGTGAGTAG+TGG 0.606127 3_2:+37728802 None:intergenic
TCATACGGCCGTCCTAGCAA+TGG 0.608461 3_2:-37723020 Msa0404840:CDS
GTGAGAATGGAACAATTGAT+GGG 0.611373 3_2:-37725113 Msa0404840:CDS
AAGACAAACATTGGAAGAGG+AGG 0.612632 3_2:-37722864 Msa0404840:CDS
ATCGGTTATGGAAATCGTGT+CGG 0.613368 3_2:+37728620 None:intergenic
GATCTTGTGGCTGTGAAGAG+TGG 0.616644 3_2:-37723062 Msa0404840:CDS
GAGATGTATGGTGGAACATG+TGG 0.617873 3_2:-37725086 Msa0404840:CDS
AATGCTCTACCAGTTGTGAA+GGG 0.623141 3_2:-37722735 Msa0404840:CDS
AAAAGAGAGAAAAGAATCTG+TGG 0.623442 3_2:+37728887 None:intergenic
AAAACATCAGAACACTTCCA+AGG 0.628023 3_2:+37722576 None:intergenic
GAATAATTGGTACAAGACCC+AGG 0.628592 3_2:+37722498 None:intergenic
ATCAACAGGAGATGATCTTG+TGG 0.639297 3_2:-37723075 Msa0404840:CDS
GATCAGGTAGATCTCCACCT+TGG 0.642012 3_2:-37722593 Msa0404840:CDS
TTGATGGGCAAGGAGATGTA+TGG 0.649620 3_2:-37725098 Msa0404840:CDS
AACACTGATGGAATTGACCC+AGG 0.651883 3_2:-37724758 Msa0404840:intron
AAGTGTTTATGGAAAGAAAG+CGG 0.656312 3_2:+37728850 None:intergenic
ACTGGATGTATATTCCAGAA+GGG 0.663404 3_2:+37724970 None:intergenic
ATGTATGGTGGAACATGTGG+AGG 0.680192 3_2:-37725083 Msa0404840:CDS
AAAATAGCAATAAACCTGTG+TGG 0.687799 3_2:+37728410 None:intergenic
ACATCAGAACACTTCCAAGG+TGG 0.689498 3_2:+37722579 None:intergenic
ATGGGCAAGGAGATGTATGG+TGG 0.690153 3_2:-37725095 Msa0404840:CDS
TGTTTATGGAAAGAAAGCGG+TGG 0.693850 3_2:+37728853 None:intergenic
CATCGCGAACTCCATCGCCG+TGG 0.694091 3_2:+37725680 None:intergenic
TGTGGCTGTGAAGAGTGGAT+GGG 0.695217 3_2:-37723057 Msa0404840:CDS
AGAGGAAGGGAGCTCCCAGG+AGG 0.696203 3_2:-37725721 Msa0404840:CDS
TTATGGAAATCGTGTCGGCG+CGG 0.702772 3_2:+37728625 None:intergenic
TCCGTTAAGTACACACCAGG+AGG 0.707120 3_2:+37728492 None:intergenic
ATTCAGCACTTAAGGAGACG+TGG 0.715137 3_2:-37728534 Msa0404840:CDS
GAGACGATCCGGTTATACGT+CGG 0.721010 3_2:+37722988 None:intergenic
GTAGGCAGTGAAACATCAGG+TGG 0.722766 3_2:-37722948 Msa0404840:CDS
ATTTCCATAACCGATTTCGG+CGG 0.727085 3_2:-37728612 Msa0404840:CDS
TGTTGTAGCTAGAAGCTAGG+TGG 0.732357 3_2:+37728790 None:intergenic
CAGCACTTAAGGAGACGTGG+TGG 0.748468 3_2:-37728531 Msa0404840:CDS
TCAGTGTTAGGAGAGTCGCG+AGG 0.797208 3_2:+37724773 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAAATAAAAA+GGG + chr3_2:37722785-37722804 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG + chr3_2:37726818-37726837 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr3_2:37726819-37726838 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr3_2:37726819-37726838 Msa0404840:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr3_2:37726818-37726837 Msa0404840:intron 0.0%
!! TATATATATATATATATATA+GGG + chr3_2:37726819-37726838 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr3_2:37726818-37726837 None:intergenic 0.0%
!!! ATTTAGTATTGTTTTTTAAT+AGG - chr3_2:37723115-37723134 Msa0404840:CDS 10.0%
!!! TTCAGAAAAAATATTTTTTT+TGG - chr3_2:37723339-37723358 Msa0404840:intron 10.0%
!! AATATTATATATTATAATGG+GGG + chr3_2:37723771-37723790 None:intergenic 10.0%
!! TCTAAATTACTTTAAATTAT+GGG + chr3_2:37723841-37723860 None:intergenic 10.0%
!! TTCTAAATTACTTTAAATTA+TGG + chr3_2:37723842-37723861 None:intergenic 10.0%
!!! TTAAAGAAAAAATAATCTTT+TGG - chr3_2:37724013-37724032 Msa0404840:intron 10.0%
!!! ATTTTGAAACAAATTTTTTT+TGG - chr3_2:37724118-37724137 Msa0404840:intron 10.0%
!!! ATTTGAAATAATAATATTTC+TGG + chr3_2:37726136-37726155 None:intergenic 10.0%
!! GTTTACTATATATATATATA+GGG - chr3_2:37726504-37726523 Msa0404840:intron 10.0%
!! TTTACTATATATATATATAG+GGG - chr3_2:37726505-37726524 Msa0404840:intron 10.0%
!!! ATTTTTTTTTAGTGTTTTTA+TGG - chr3_2:37727274-37727293 Msa0404840:intron 10.0%
!!! ACAAACATAATTTTGTTTTT+TGG - chr3_2:37723061-37723080 Msa0404840:CDS 15.0%
!!! TATTTTTTTTTTCTTGTAAC+AGG + chr3_2:37723143-37723162 None:intergenic 15.0%
!! GAAAAATTATTAAATTTGTG+TGG + chr3_2:37723555-37723574 None:intergenic 15.0%
!!! TAAAAAAAGTACATTGTTTA+AGG + chr3_2:37723671-37723690 None:intergenic 15.0%
!! AATAATTGATTAGGATAATT+TGG + chr3_2:37723980-37723999 None:intergenic 15.0%
!! AAACAAATCAATAATTGATT+AGG + chr3_2:37723989-37724008 None:intergenic 15.0%
!!! TCATTATTAATTGACTTAAT+TGG - chr3_2:37724218-37724237 Msa0404840:intron 15.0%
!! AATAAAAATAAAAACTATGG+TGG - chr3_2:37724479-37724498 Msa0404840:intron 15.0%
!! ATAAAAATAAAAACTATGGT+GGG - chr3_2:37724480-37724499 Msa0404840:intron 15.0%
!! TAGATTAAAAATCCTATATT+TGG - chr3_2:37725115-37725134 Msa0404840:CDS 15.0%
!!! TAATTTTTTTAGATGCTATT+TGG + chr3_2:37725738-37725757 None:intergenic 15.0%
!!! ATGAATCTAAAATGTTTTAT+TGG - chr3_2:37725786-37725805 Msa0404840:intron 15.0%
!!! TGAATCTAAAATGTTTTATT+GGG - chr3_2:37725787-37725806 Msa0404840:intron 15.0%
!!! ATTCTTTCAATAATTTGTTT+AGG - chr3_2:37725939-37725958 Msa0404840:intron 15.0%
!!! AAAGTTTTGAATTACATTTT+AGG + chr3_2:37726302-37726321 None:intergenic 15.0%
!! TAGATAAATGATCTTTATAT+TGG - chr3_2:37726474-37726493 Msa0404840:intron 15.0%
!! TATATATATATAGTAAACCA+AGG + chr3_2:37726502-37726521 None:intergenic 15.0%
!! GGTTTACTATATATATATAT+AGG - chr3_2:37726503-37726522 Msa0404840:intron 15.0%
!!! AAGAGATATTTTTGTTTTTT+TGG + chr3_2:37727100-37727119 None:intergenic 15.0%
!!! ATTGTTTCTTTTTTGTTTAA+AGG + chr3_2:37727256-37727275 None:intergenic 15.0%
!!! TCTTATGTATATTTTTTCTT+AGG + chr3_2:37727317-37727336 None:intergenic 15.0%
!!! ATTTGATGATAAAGTGTTTA+TGG + chr3_2:37722308-37722327 None:intergenic 20.0%
!! CGTTAATACTATACTAAATT+AGG + chr3_2:37722811-37722830 None:intergenic 20.0%
!!! GATTGTGTACATTTTTTATT+GGG + chr3_2:37722872-37722891 None:intergenic 20.0%
!!! TGATTGTGTACATTTTTTAT+TGG + chr3_2:37722873-37722892 None:intergenic 20.0%
!!! ATAATTTTGTTTTTTGGTGA+CGG - chr3_2:37723067-37723086 Msa0404840:CDS 20.0%
!! TATTGAATAAATAATGCTTC+TGG - chr3_2:37723173-37723192 Msa0404840:intron 20.0%
!! ATCTAAAAAATACAAGTCAA+AGG + chr3_2:37723630-37723649 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr3_2:37724042-37724061 Msa0404840:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr3_2:37724043-37724062 Msa0404840:intron 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG - chr3_2:37724275-37724294 Msa0404840:intron 20.0%
!! ATGCTTCTTTAAATAATGTA+TGG - chr3_2:37724404-37724423 Msa0404840:intron 20.0%
!! AATAATGTATGGTCAAAAAT+AGG - chr3_2:37724415-37724434 Msa0404840:intron 20.0%
!! AAAAATAGGACTATAGATAA+TGG - chr3_2:37724429-37724448 Msa0404840:intron 20.0%
!! AAAATAGGACTATAGATAAT+GGG - chr3_2:37724430-37724449 Msa0404840:intron 20.0%
!! ATGATATGACATTGTTAATT+TGG + chr3_2:37724997-37725016 None:intergenic 20.0%
!!! AAAAATCCTATATTTGGAAT+AGG - chr3_2:37725121-37725140 Msa0404840:intron 20.0%
!!! AGATTCATTTTAGTATAGTT+GGG + chr3_2:37725774-37725793 None:intergenic 20.0%
!!! TAGATTCATTTTAGTATAGT+TGG + chr3_2:37725775-37725794 None:intergenic 20.0%
!! AAAAAATGAATACAGAACAT+TGG + chr3_2:37725873-37725892 None:intergenic 20.0%
!! AAAAAACAAAAATGCATCAT+AGG - chr3_2:37726262-37726281 Msa0404840:intron 20.0%
!! AAAAACAAAAATGCATCATA+GGG - chr3_2:37726263-37726282 Msa0404840:intron 20.0%
!!! AAGATCATTTATCTAAGTTT+TGG + chr3_2:37726469-37726488 None:intergenic 20.0%
!!! TAATTTTCAAAAAGGAATGT+TGG + chr3_2:37726957-37726976 None:intergenic 20.0%
!! AATTAAAATACAATGATCCT+AGG + chr3_2:37727172-37727191 None:intergenic 20.0%
!! AAATATACATAAGATAAGAG+AGG - chr3_2:37727323-37727342 Msa0404840:intron 20.0%
!!! ATGTTTTCAAAAAGAAATGT+TGG - chr3_2:37727664-37727683 Msa0404840:intron 20.0%
!!! TTTGTTTTGTCCAAATAAAA+GGG - chr3_2:37727687-37727706 Msa0404840:intron 20.0%
!!! TTACAAATGTTGACTTTATT+TGG + chr3_2:37727974-37727993 None:intergenic 20.0%
!! ATGTGTATATAGAAAATTCA+AGG - chr3_2:37728329-37728348 Msa0404840:intron 20.0%
!!! AATTACAATTAAGAGTGTTT+GGG - chr3_2:37728432-37728451 Msa0404840:CDS 20.0%
! CAAAGGATGTAAATGATTTA+AGG + chr3_2:37722193-37722212 None:intergenic 25.0%
! AGAAATAGGAGAAGAAAATA+AGG + chr3_2:37722444-37722463 None:intergenic 25.0%
! TATGTTTGTTTCATGTGATA+AGG + chr3_2:37723050-37723069 None:intergenic 25.0%
! CAAAGAATATTTGCTTACAA+CGG - chr3_2:37723293-37723312 Msa0404840:intron 25.0%
! AACGTAATTGAACATTTGTA+AGG - chr3_2:37723418-37723437 Msa0404840:intron 25.0%
!! AGAGTATTCAGTATTTATTG+AGG - chr3_2:37723501-37723520 Msa0404840:intron 25.0%
!!! GAATTATTTTAAAGACAACC+AGG - chr3_2:37723859-37723878 Msa0404840:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr3_2:37724265-37724284 None:intergenic 25.0%
! CATTGAATAACTAATGTATG+TGG - chr3_2:37724300-37724319 Msa0404840:intron 25.0%
!!! TTCTACTATCAAGTTGAATT+TGG - chr3_2:37724813-37724832 Msa0404840:intron 25.0%
! TGTAAATATGTTTCATACTG+AGG - chr3_2:37724867-37724886 Msa0404840:intron 25.0%
! GTAAATATGTTTCATACTGA+GGG - chr3_2:37724868-37724887 Msa0404840:intron 25.0%
!!! ACAACTTATTTTGGAAGTAT+TGG - chr3_2:37724924-37724943 Msa0404840:intron 25.0%
! AATCTGAAAATACTCGTAAT+TGG - chr3_2:37724964-37724983 Msa0404840:CDS 25.0%
!!! AAAATACTCGTAATTGGTTT+TGG - chr3_2:37724970-37724989 Msa0404840:CDS 25.0%
!! TTTTCTCCACAATTCTATTT+GGG + chr3_2:37725074-37725093 None:intergenic 25.0%
!! TTTTTCTCCACAATTCTATT+TGG + chr3_2:37725075-37725094 None:intergenic 25.0%
! TGAGATAAACATTGTATCTA+AGG - chr3_2:37725174-37725193 Msa0404840:intron 25.0%
! AACATTACACTACCAAATAA+TGG + chr3_2:37725249-37725268 None:intergenic 25.0%
! AGTGAATGTTCAAAGTTTAA+TGG - chr3_2:37725283-37725302 Msa0404840:intron 25.0%
!!! CCATAATATTAAGGTTTTAG+AGG + chr3_2:37725697-37725716 None:intergenic 25.0%
!!! CCTCTAAAACCTTAATATTA+TGG - chr3_2:37725694-37725713 Msa0404840:CDS 25.0%
! CTAAAACCTTAATATTATGG+CGG - chr3_2:37725697-37725716 Msa0404840:CDS 25.0%
! TAAAACCTTAATATTATGGC+GGG - chr3_2:37725698-37725717 Msa0404840:CDS 25.0%
! AAAGATTAGGTTTCATAGAT+TGG + chr3_2:37725985-37726004 None:intergenic 25.0%
! TATAAAAATAAGAGTGAAGG+AGG + chr3_2:37726010-37726029 None:intergenic 25.0%
!!! TCCTTCACTCTTATTTTTAT+AGG - chr3_2:37726009-37726028 Msa0404840:intron 25.0%
! ACCTATAAAAATAAGAGTGA+AGG + chr3_2:37726013-37726032 None:intergenic 25.0%
!!! CTTATTTTTATAGGTGAGAA+TGG - chr3_2:37726018-37726037 Msa0404840:intron 25.0%
! TTCAAAAATTCAACAAGGTT+TGG + chr3_2:37726111-37726130 None:intergenic 25.0%
! TGGAATTCAAAAATTCAACA+AGG + chr3_2:37726116-37726135 None:intergenic 25.0%
!! GCAGGTAAAAATTTGATTTA+TGG - chr3_2:37726202-37726221 Msa0404840:intron 25.0%
!!! TAAGTTTTGAGCTAAATTTC+AGG + chr3_2:37726434-37726453 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr3_2:37726571-37726590 Msa0404840:intron 25.0%
! GCAAGTAAATAACTAAAAAG+TGG - chr3_2:37726571-37726590 Msa0404840:intron 25.0%
! ACACCTTCATATAAATTGAT+GGG + chr3_2:37727726-37727745 None:intergenic 25.0%
!!! TTAGTTTTGTCCTAACAAAA+AGG + chr3_2:37726934-37726953 None:intergenic 25.0%
!!! TTTGTTTTTTTGGACAAGAA+GGG + chr3_2:37727090-37727109 None:intergenic 25.0%
!!! TTTTGTTTTTTTGGACAAGA+AGG + chr3_2:37727091-37727110 None:intergenic 25.0%
! TGCAAGGAAAGAAAAAAATT+GGG - chr3_2:37727138-37727157 Msa0404840:intron 25.0%
! AATTGAATAATGAGAGAACT+TGG + chr3_2:37727207-37727226 None:intergenic 25.0%
!!! TATTTTTTCTTAGGTTCGAT+TGG + chr3_2:37727308-37727327 None:intergenic 25.0%
! GAGAAAGAATATAGAAGAAA+AGG + chr3_2:37727398-37727417 None:intergenic 25.0%
! TGAAAACATACCAAAATGAA+GGG + chr3_2:37727653-37727672 None:intergenic 25.0%
! TTGAAAACATACCAAAATGA+AGG + chr3_2:37727654-37727673 None:intergenic 25.0%
!!! GTTTGTTTTGTCCAAATAAA+AGG - chr3_2:37727686-37727705 Msa0404840:intron 25.0%
! ACACCTTCATATAAATTGAT+GGG - chr3_2:37727726-37727745 Msa0404840:intron 25.0%
! TATATAGAAAATTCAAGGCA+AGG - chr3_2:37728334-37728353 Msa0404840:intron 25.0%
!! TTAGGGTTAAATTTTTCATC+CGG + chr3_2:37728391-37728410 None:intergenic 25.0%
!!! GAATTACAATTAAGAGTGTT+TGG - chr3_2:37728431-37728450 Msa0404840:CDS 25.0%
!!! ATTACAATTAAGAGTGTTTG+GGG - chr3_2:37728433-37728452 Msa0404840:CDS 25.0%
! TAGAAACAAATCTCAGTAAA+AGG + chr3_2:37728505-37728524 None:intergenic 25.0%
! TTCTATGATATTAACCTTCA+TGG - chr3_2:37728520-37728539 Msa0404840:CDS 25.0%
!!! TGTTTTTGGATTTTCACAAA+AGG - chr3_2:37728585-37728604 Msa0404840:CDS 25.0%
! TTGAATTGTCAGTAATATGT+TGG + chr3_2:37728728-37728747 None:intergenic 25.0%
! ATACTTGAAGAGAGTAAAAT+CGG + chr3_2:37728869-37728888 None:intergenic 25.0%
ATGTCGCTAAAAATGAACAA+AGG + chr3_2:37722210-37722229 None:intergenic 30.0%
AAAAGAGAGAAAAGAATCTG+TGG + chr3_2:37722260-37722279 None:intergenic 30.0%
AAGTGTTTATGGAAAGAAAG+CGG + chr3_2:37722297-37722316 None:intergenic 30.0%
TTTATAGGATTCAGCACTTA+AGG - chr3_2:37722602-37722621 Msa0404840:CDS 30.0%
AAAATAGCAATAAACCTGTG+TGG + chr3_2:37722737-37722756 None:intergenic 30.0%
GTGAAACACAAACAATTGTA+AGG + chr3_2:37723014-37723033 None:intergenic 30.0%
AGTTAATTGCACACAGATTA+AGG - chr3_2:37723918-37723937 Msa0404840:intron 30.0%
! TTGTTTTCAATATACTCCCT+CGG + chr3_2:37724167-37724186 None:intergenic 30.0%
! GGGAGTATATTGAAAACAAT+AGG - chr3_2:37724168-37724187 Msa0404840:intron 30.0%
TGTGGTCACATTTATATGTT+AGG - chr3_2:37724318-37724337 Msa0404840:intron 30.0%
! TTTTTGCTTGTAAATGTGAC+CGG - chr3_2:37724374-37724393 Msa0404840:intron 30.0%
CAATTTCCATGTTATACAGT+TGG - chr3_2:37724764-37724783 Msa0404840:CDS 30.0%
ACAAAACCAACTGTATAACA+TGG + chr3_2:37724773-37724792 None:intergenic 30.0%
!!! TGTTATACAGTTGGTTTTGT+TGG - chr3_2:37724773-37724792 Msa0404840:CDS 30.0%
! GTAGAAGAGTACATCAATAA+TGG + chr3_2:37724799-37724818 None:intergenic 30.0%
! GAACCAGAAACAACTTATTT+TGG - chr3_2:37724915-37724934 Msa0404840:intron 30.0%
! CTTCCAAAATAAGTTGTTTC+TGG + chr3_2:37724921-37724940 None:intergenic 30.0%
AAAAAGCCCAAATAGAATTG+TGG - chr3_2:37725065-37725084 Msa0404840:CDS 30.0%
! AATCCTATATTTGGAATAGG+AGG - chr3_2:37725124-37725143 Msa0404840:intron 30.0%
!! ATCTAAGGCTAATTTTTGTG+TGG - chr3_2:37725189-37725208 Msa0404840:intron 30.0%
TGTGTGGATTTAAATGTGAT+TGG - chr3_2:37725205-37725224 Msa0404840:intron 30.0%
TATGTGTTGTGACCATTATT+TGG - chr3_2:37725234-37725253 Msa0404840:intron 30.0%
TTCCTTTCTTCATTCTTTAG+AGG - chr3_2:37725358-37725377 Msa0404840:intron 30.0%
! AACCTCTAAAGAATGAAGAA+AGG + chr3_2:37725363-37725382 None:intergenic 30.0%
! TCTTCATTCTTTAGAGGTTA+TGG - chr3_2:37725364-37725383 Msa0404840:intron 30.0%
! TTCTTTAGAGGTTATGGAAT+TGG - chr3_2:37725370-37725389 Msa0404840:intron 30.0%
!! AGGTATATCAGTTTTATCCA+CGG - chr3_2:37725447-37725466 Msa0404840:intron 30.0%
TAATATTGCAGCAAAATGTG+AGG - chr3_2:37725607-37725626 Msa0404840:intron 30.0%
AAATTCCCGCCATAATATTA+AGG + chr3_2:37725706-37725725 None:intergenic 30.0%
!! AGCATGCAATTTTCTTGTTT+TGG + chr3_2:37725818-37725837 None:intergenic 30.0%
ACAGAACATTGGATCAATTA+TGG + chr3_2:37725862-37725881 None:intergenic 30.0%
! AATTTTTACCTGCAGTAAAC+TGG + chr3_2:37726195-37726214 None:intergenic 30.0%
AGTTCTATCAGTATTTACCT+GGG + chr3_2:37726406-37726425 None:intergenic 30.0%
AAGTTCTATCAGTATTTACC+TGG + chr3_2:37726407-37726426 None:intergenic 30.0%
TTATAGCAACATACACCTTA+GGG + chr3_2:37726606-37726625 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG - chr3_2:37726629-37726648 Msa0404840:intron 30.0%
ACACCCATCAATTTATATGA+AGG - chr3_2:37726889-37726908 Msa0404840:intron 30.0%
CACACCTTCATATAAATTGA+TGG + chr3_2:37727725-37727744 None:intergenic 30.0%
! AGCTTGGCTAATTTTCAAAA+AGG + chr3_2:37726965-37726984 None:intergenic 30.0%
GTGCAAGGAAAGAAAAAAAT+TGG - chr3_2:37727137-37727156 Msa0404840:intron 30.0%
GCAAGGAAAGAAAAAAATTG+GGG - chr3_2:37727139-37727158 Msa0404840:intron 30.0%
! GAAGAAAAGGACAATTTTGA+AGG + chr3_2:37727385-37727404 None:intergenic 30.0%
TTTGTGAAAGCAAAGAATAG+AGG - chr3_2:37727560-37727579 Msa0404840:intron 30.0%
ATAGAGGAAGATGATTGAAA+AGG - chr3_2:37727576-37727595 Msa0404840:intron 30.0%
! TACATATTTGCCCTTCATTT+TGG - chr3_2:37727640-37727659 Msa0404840:intron 30.0%
CACACCTTCATATAAATTGA+TGG - chr3_2:37727725-37727744 Msa0404840:intron 30.0%
ACACCCATCAATTTATATGA+AGG + chr3_2:37726889-37726908 None:intergenic 30.0%
TTCCCCTTCATATAAATTGA+TGG - chr3_2:37727761-37727780 Msa0404840:intron 30.0%
TCCCCTTCATATAAATTGAT+GGG - chr3_2:37727762-37727781 Msa0404840:intron 30.0%
ACCCATCAATTTATATGAAG+GGG + chr3_2:37726891-37726910 None:intergenic 30.0%
CACCCATCAATTTATATGAA+GGG + chr3_2:37726890-37726909 None:intergenic 30.0%
ACACCCATCAATTTATATGA+AGG + chr3_2:37726889-37726908 None:intergenic 30.0%
AACTTATTGTCTCAGAAGTT+AGG - chr3_2:37727860-37727879 Msa0404840:intron 30.0%
GATGAATACGGTATTTCATA+CGG - chr3_2:37728109-37728128 Msa0404840:intron 30.0%
ATCCACATTAAGACAAACAT+TGG - chr3_2:37728271-37728290 Msa0404840:intron 30.0%
TTCCAATGTTTGTCTTAATG+TGG + chr3_2:37728276-37728295 None:intergenic 30.0%
ATTAAGACAAACATTGGAAG+AGG - chr3_2:37728277-37728296 Msa0404840:intron 30.0%
! ATTAAAATTGCTGGTGATGT+AGG - chr3_2:37728358-37728377 Msa0404840:intron 30.0%
ACATATCGCTCATGAATAAT+TGG + chr3_2:37728662-37728681 None:intergenic 30.0%
AGAGTAAAATCGGTAATTTC+AGG + chr3_2:37728859-37728878 None:intergenic 30.0%
!!! ATTTTTAGCGACATTGTCTC+TGG - chr3_2:37722216-37722235 Msa0404840:three_prime_UTR 35.0%
AGAAGAAAATAAGGAAGAGG+AGG + chr3_2:37722435-37722454 None:intergenic 35.0%
AGGAGAAGAAAATAAGGAAG+AGG + chr3_2:37722438-37722457 None:intergenic 35.0%
GGCAGAGATATAAGAGAAAT+AGG + chr3_2:37722458-37722477 None:intergenic 35.0%
TCATATTCCACAACATGTTC+CGG - chr3_2:37722478-37722497 Msa0404840:exon 35.0%
! ACGATTTCCATAACCGATTT+CGG - chr3_2:37722529-37722548 Msa0404840:CDS 35.0%
ACAATTGTTTGTGTTTCACC+TGG - chr3_2:37723015-37723034 Msa0404840:CDS 35.0%
ATAGATCCATACATCTAGAG+TGG - chr3_2:37723723-37723742 Msa0404840:intron 35.0%
! CATACATCTAGAGTGGTATT+GGG - chr3_2:37723730-37723749 Msa0404840:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_2:37723897-37723916 None:intergenic 35.0%
!! GACTATAGATAATGGGTTGT+CGG - chr3_2:37724437-37724456 Msa0404840:intron 35.0%
ATACTTCAGTGACTTAGCTT+AGG - chr3_2:37724574-37724593 Msa0404840:intron 35.0%
ATGTAATGGTATGGTGACAT+TGG - chr3_2:37724686-37724705 Msa0404840:intron 35.0%
AGTCCTCCTATTCCAAATAT+AGG + chr3_2:37725130-37725149 None:intergenic 35.0%
GTGGATTTAAATGTGATTGG+AGG - chr3_2:37725208-37725227 Msa0404840:intron 35.0%
! GATGGTAAAGGTGCAATTAA+AGG + chr3_2:37725396-37725415 None:intergenic 35.0%
ATTGCACCTTTACCATCTTA+TGG - chr3_2:37725399-37725418 Msa0404840:intron 35.0%
GTTTCATAGATTGGTACACT+TGG + chr3_2:37725976-37725995 None:intergenic 35.0%
GTGAGAATGGAACAATTGAT+GGG - chr3_2:37726031-37726050 Msa0404840:intron 35.0%
ATATACATCCAGTTTACTGC+AGG - chr3_2:37726184-37726203 Msa0404840:intron 35.0%
AAAATGCATCATAGGGATAG+AGG - chr3_2:37726270-37726289 Msa0404840:intron 35.0%
!! TGATCTTTATATTGGCTCCT+TGG - chr3_2:37726482-37726501 Msa0404840:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG - chr3_2:37726588-37726607 Msa0404840:intron 35.0%
GTTATAGCAACATACACCTT+AGG + chr3_2:37726607-37726626 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG - chr3_2:37726628-37726647 Msa0404840:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG + chr3_2:37726633-37726652 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG - chr3_2:37726652-37726671 Msa0404840:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr3_2:37726688-37726707 Msa0404840:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr3_2:37726777-37726796 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG - chr3_2:37726737-37726756 Msa0404840:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG + chr3_2:37726755-37726774 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG + chr3_2:37726756-37726775 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr3_2:37726777-37726796 Msa0404840:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr3_2:37726688-37726707 None:intergenic 35.0%
! GCATAGAACACCTTTTTGTT+AGG - chr3_2:37726921-37726940 Msa0404840:intron 35.0%
TTGAAAATTAGCCAAGCTGA+AGG - chr3_2:37726967-37726986 Msa0404840:intron 35.0%
TGAAAATTAGCCAAGCTGAA+GGG - chr3_2:37726968-37726987 Msa0404840:intron 35.0%
TGAAACACATGAGATCCTAA+CGG - chr3_2:37727436-37727455 Msa0404840:intron 35.0%
! GCATTGAACACCCTTTTATT+TGG + chr3_2:37727700-37727719 None:intergenic 35.0%
CTCTTCAGAAAGTAGTTTAG+AGG - chr3_2:37727942-37727961 Msa0404840:intron 35.0%
AAGTTCAAATGTCTGCATAG+AGG - chr3_2:37728036-37728055 Msa0404840:intron 35.0%
CATATCAACCTCTTCAACAT+GGG - chr3_2:37728241-37728260 Msa0404840:intron 35.0%
AGGCAAGGAATTAAAATTGC+TGG - chr3_2:37728349-37728368 Msa0404840:intron 35.0%
! GGTTAAATTTTTCATCCGGA+TGG + chr3_2:37728387-37728406 None:intergenic 35.0%
ATTGTAATTCCCTTCACAAC+TGG + chr3_2:37728421-37728440 None:intergenic 35.0%
TATTAACCTTCATGGTGAGA+CGG - chr3_2:37728528-37728547 Msa0404840:CDS 35.0%
AAAACATCAGAACACTTCCA+AGG + chr3_2:37728571-37728590 None:intergenic 35.0%
!!! TGGAAGTGTTCTGATGTTTT+TGG - chr3_2:37728571-37728590 Msa0404840:CDS 35.0%
! TTTCACAAAAGGTTAGTCCT+TGG - chr3_2:37728596-37728615 Msa0404840:CDS 35.0%
TATTAACGATTTCTTCGTGC+CGG - chr3_2:37728786-37728805 Msa0404840:five_prime_UTR 35.0%
TGTTTATGGAAAGAAAGCGG+TGG + chr3_2:37722294-37722313 None:intergenic 40.0%
GGAACATGTTGTGGAATATG+AGG + chr3_2:37722479-37722498 None:intergenic 40.0%
ATCGGTTATGGAAATCGTGT+CGG + chr3_2:37722527-37722546 None:intergenic 40.0%
! ATTTCCATAACCGATTTCGG+CGG - chr3_2:37722532-37722551 Msa0404840:CDS 40.0%
!! GTTGAACTCAAAGGCATTCA+GGG - chr3_2:37722573-37722592 Msa0404840:CDS 40.0%
CATTCAGGGCAGCTATTTAT+AGG - chr3_2:37722587-37722606 Msa0404840:CDS 40.0%
ATGACTCTTTATCTTGCTGC+TGG - chr3_2:37722697-37722716 Msa0404840:CDS 40.0%
TGCTGTTATTAAAGCCACAC+AGG - chr3_2:37722720-37722739 Msa0404840:CDS 40.0%
GCTATTTGAGCTTAGGTGTT+AGG + chr3_2:37722943-37722962 None:intergenic 40.0%
!! AGGTGTTGCTATTTGAGCTT+AGG + chr3_2:37722950-37722969 None:intergenic 40.0%
! GATGTCTAGCTTAGCAATAC+AGG + chr3_2:37722970-37722989 None:intergenic 40.0%
TTGTGTTTCACCTGGTAAAG+TGG - chr3_2:37723023-37723042 Msa0404840:CDS 40.0%
CCAATACCACTCTAGATGTA+TGG + chr3_2:37723732-37723751 None:intergenic 40.0%
! CCATACATCTAGAGTGGTAT+TGG - chr3_2:37723729-37723748 Msa0404840:intron 40.0%
!! AAACGGAAGGAGTATTATCC+TGG + chr3_2:37723880-37723899 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+AGG + chr3_2:37723893-37723912 None:intergenic 40.0%
!!! GACACTCATTTTGAAACCGA+GGG - chr3_2:37724148-37724167 Msa0404840:intron 40.0%
TGCGTGTTATATATTCCCTC+CGG - chr3_2:37724243-37724262 Msa0404840:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr3_2:37724261-37724280 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr3_2:37724262-37724281 None:intergenic 40.0%
! TTAAAGAAGCATACTCCCTC+CGG + chr3_2:37724396-37724415 None:intergenic 40.0%
!! ATTTTAGTCCTTTCAGGCTC+AGG + chr3_2:37724506-37724525 None:intergenic 40.0%
!!! CCACTGATTTTAGTCCTTTC+AGG + chr3_2:37724512-37724531 None:intergenic 40.0%
CCTGAAAGGACTAAAATCAG+TGG - chr3_2:37724509-37724528 Msa0404840:intron 40.0%
GAAAGGACTAAAATCAGTGG+TGG - chr3_2:37724512-37724531 Msa0404840:intron 40.0%
CACACATTCACACACATCAA+CGG + chr3_2:37724629-37724648 None:intergenic 40.0%
TTGATGTGTGTGAATGTGTG+TGG - chr3_2:37724629-37724648 Msa0404840:intron 40.0%
TGATGTGTGTGAATGTGTGT+GGG - chr3_2:37724630-37724649 Msa0404840:intron 40.0%
!! AACCACTTTGGTGCCATTAA+TGG + chr3_2:37724714-37724733 None:intergenic 40.0%
CCTCTTCCATAAGATGGTAA+AGG + chr3_2:37725408-37725427 None:intergenic 40.0%
CCTTTACCATCTTATGGAAG+AGG - chr3_2:37725405-37725424 Msa0404840:intron 40.0%
TACCATCTTATGGAAGAGGA+AGG - chr3_2:37725409-37725428 Msa0404840:intron 40.0%
ACCATCTTATGGAAGAGGAA+GGG - chr3_2:37725410-37725429 Msa0404840:intron 40.0%
AACTGATATACCTTCCTCCT+GGG + chr3_2:37725440-37725459 None:intergenic 40.0%
AAACTGATATACCTTCCTCC+TGG + chr3_2:37725441-37725460 None:intergenic 40.0%
TCATATCTCACCAGTGAGTA+TGG - chr3_2:37725538-37725557 Msa0404840:intron 40.0%
CAACTTAGAACCATACTCAC+TGG + chr3_2:37725551-37725570 None:intergenic 40.0%
!! GTGAGTATGGTTCTAAGTTG+TGG - chr3_2:37725551-37725570 Msa0404840:intron 40.0%
!! ATGGTTCTAAGTTGTGGATC+TGG - chr3_2:37725557-37725576 Msa0404840:intron 40.0%
CAGCAAAATGTGAGGAAATG+TGG - chr3_2:37725615-37725634 Msa0404840:intron 40.0%
!! AATAGTATCGGCCACAATAG+TGG - chr3_2:37725651-37725670 Msa0404840:intron 40.0%
CAGTTTCACAACCACTATTG+TGG + chr3_2:37725665-37725684 None:intergenic 40.0%
AGTGAAGGAGGAGAAAGATT+AGG + chr3_2:37725998-37726017 None:intergenic 40.0%
GGTGAGAATGGAACAATTGA+TGG - chr3_2:37726030-37726049 Msa0404840:intron 40.0%
! AATGGAACAATTGATGGGCA+AGG - chr3_2:37726036-37726055 Msa0404840:intron 40.0%
CAACAACATTGCTGCAATGA+AGG + chr3_2:37726328-37726347 None:intergenic 40.0%
! TGTCCGATATGTCACGATTT+TGG - chr3_2:37726346-37726365 Msa0404840:intron 40.0%
GAGCCAAAATCGTGACATAT+CGG + chr3_2:37726352-37726371 None:intergenic 40.0%
!!! ACACCCACTAGTTTTCATGT+GGG - chr3_2:37726539-37726558 Msa0404840:intron 40.0%
ACTCCCACATGAAAACTAGT+GGG + chr3_2:37726545-37726564 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG + chr3_2:37726670-37726689 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr3_2:37726687-37726706 Msa0404840:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr3_2:37726776-37726795 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr3_2:37726776-37726795 Msa0404840:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr3_2:37726687-37726706 None:intergenic 40.0%
TACATATTTGCCCTTCAGCT+TGG + chr3_2:37726981-37727000 None:intergenic 40.0%
ACAAGAAGGGAGAGAATAAC+TGG + chr3_2:37727077-37727096 None:intergenic 40.0%
AAAATTGGGGTTTCTCACCT+AGG - chr3_2:37727152-37727171 Msa0404840:intron 40.0%
!!! TAAGAGAGGTGTTCCTGTTT+TGG - chr3_2:37727337-37727356 Msa0404840:intron 40.0%
!!! GTGTTCCTGTTTTGGAGAAT+TGG - chr3_2:37727345-37727364 Msa0404840:intron 40.0%
GATGTCCAATTCTCCAAAAC+AGG + chr3_2:37727353-37727372 None:intergenic 40.0%
GAGGACTCATACATATCAAC+AGG - chr3_2:37728055-37728074 Msa0404840:intron 40.0%
ATCAACAGGAGATGATCTTG+TGG - chr3_2:37728069-37728088 Msa0404840:intron 40.0%
AAGAGTGGATGGGATGAATA+CGG - chr3_2:37728097-37728116 Msa0404840:intron 40.0%
!! GTTGAAGAGGTTGATATGCT+CGG + chr3_2:37728239-37728258 None:intergenic 40.0%
GCATATCAACCTCTTCAACA+TGG - chr3_2:37728240-37728259 Msa0404840:intron 40.0%
AAGACAAACATTGGAAGAGG+AGG - chr3_2:37728280-37728299 Msa0404840:intron 40.0%
! TCACAACTGGTAGAGCATTA+GGG + chr3_2:37728408-37728427 None:intergenic 40.0%
! TTCACAACTGGTAGAGCATT+AGG + chr3_2:37728409-37728428 None:intergenic 40.0%
TAATGCTCTACCAGTTGTGA+AGG - chr3_2:37728408-37728427 Msa0404840:intron 40.0%
AATGCTCTACCAGTTGTGAA+GGG - chr3_2:37728409-37728428 Msa0404840:intron 40.0%
!! TTGCAAGCTGGTTTGATACA+TGG - chr3_2:37728466-37728485 Msa0404840:CDS 40.0%
ATTAACCTTCATGGTGAGAC+GGG - chr3_2:37728529-37728548 Msa0404840:CDS 40.0%
GAATAATTGGTACAAGACCC+AGG + chr3_2:37728649-37728668 None:intergenic 40.0%
AATCGGTAATTTCAGGACTC+AGG + chr3_2:37728852-37728871 None:intergenic 40.0%
TGTTGTAGCTAGAAGCTAGG+TGG + chr3_2:37722357-37722376 None:intergenic 45.0%
TGCTGTTGTAGCTAGAAGCT+AGG + chr3_2:37722360-37722379 None:intergenic 45.0%
AGGAAGAGGAGGAAAGTTGA+GGG + chr3_2:37722424-37722443 None:intergenic 45.0%
AAGGAAGAGGAGGAAAGTTG+AGG + chr3_2:37722425-37722444 None:intergenic 45.0%
!! CGTTGAACTCAAAGGCATTC+AGG - chr3_2:37722572-37722591 Msa0404840:CDS 45.0%
ATTCAGCACTTAAGGAGACG+TGG - chr3_2:37722610-37722629 Msa0404840:CDS 45.0%
GAGCTTAGGTGTTAGGACTT+AGG + chr3_2:37722936-37722955 None:intergenic 45.0%
GTGATAAGGACCACTTTACC+AGG + chr3_2:37723036-37723055 None:intergenic 45.0%
! CTAGAGTGGTATTGGGAATG+CGG - chr3_2:37723737-37723756 Msa0404840:intron 45.0%
!!! CGACACTCATTTTGAAACCG+AGG - chr3_2:37724147-37724166 Msa0404840:intron 45.0%
TTGCTTGTAAATGTGACCGG+AGG - chr3_2:37724377-37724396 Msa0404840:intron 45.0%
TGCTTGTAAATGTGACCGGA+GGG - chr3_2:37724378-37724397 Msa0404840:intron 45.0%
AGGACTAAAATCAGTGGTGG+TGG - chr3_2:37724515-37724534 Msa0404840:intron 45.0%
GGACTAAAATCAGTGGTGGT+GGG - chr3_2:37724516-37724535 Msa0404840:intron 45.0%
TCTGCATGGTTGCATGTGAA+TGG - chr3_2:37724547-37724566 Msa0404840:intron 45.0%
CTGCATGGTTGCATGTGAAT+GGG - chr3_2:37724548-37724567 Msa0404840:intron 45.0%
TGCATGGTTGCATGTGAATG+GGG - chr3_2:37724549-37724568 Msa0404840:intron 45.0%
! TGACTTAGCTTAGGTGCCAT+TGG - chr3_2:37724583-37724602 Msa0404840:intron 45.0%
GATTTCTCCAATGGCACCAA+TGG + chr3_2:37724602-37724621 None:intergenic 45.0%
! TGTGTGTGGTGGAGATGTAA+TGG - chr3_2:37724672-37724691 Msa0404840:intron 45.0%
! GTGGTGGAGATGTAATGGTA+TGG - chr3_2:37724677-37724696 Msa0404840:intron 45.0%
!! GGTGACATTGGTGCCATTAA+TGG - chr3_2:37724698-37724717 Msa0404840:intron 45.0%
TGCCATTAATGGCACCAAAG+TGG - chr3_2:37724709-37724728 Msa0404840:intron 45.0%
TGTGAATACCATCCCCATTC+GGG + chr3_2:37724737-37724756 None:intergenic 45.0%
CTGTGAATACCATCCCCATT+CGG + chr3_2:37724738-37724757 None:intergenic 45.0%
TCCCTTCCTCTTCCATAAGA+TGG + chr3_2:37725414-37725433 None:intergenic 45.0%
!! ATCAGTTTTATCCACGGCGA+TGG - chr3_2:37725453-37725472 Msa0404840:intron 45.0%
CGATACTATTGTGACCGCAT+CGG + chr3_2:37725641-37725660 None:intergenic 45.0%
CGATGCGGTCACAATAGTAT+CGG - chr3_2:37725639-37725658 Msa0404840:intron 45.0%
GTGGTTGTGAAACTGTTGTG+CGG - chr3_2:37725670-37725689 Msa0404840:CDS 45.0%
! TTGATGGGCAAGGAGATGTA+TGG - chr3_2:37726046-37726065 Msa0404840:intron 45.0%
! GAGATGTATGGTGGAACATG+TGG - chr3_2:37726058-37726077 Msa0404840:intron 45.0%
! ATGTATGGTGGAACATGTGG+AGG - chr3_2:37726061-37726080 Msa0404840:intron 45.0%
GGGTCAATTCCATCAGTGTT+AGG + chr3_2:37726386-37726405 None:intergenic 45.0%
AACACTGATGGAATTGACCC+AGG - chr3_2:37726386-37726405 Msa0404840:intron 45.0%
!!! CACACCCACTAGTTTTCATG+TGG - chr3_2:37726538-37726557 Msa0404840:intron 45.0%
CACTCCCACATGAAAACTAG+TGG + chr3_2:37726546-37726565 None:intergenic 45.0%
CTCTTCTTCTCAATCAACGC+AGG - chr3_2:37727115-37727134 Msa0404840:intron 45.0%
ATGAGATCCTAACGGAGTGA+TGG - chr3_2:37727444-37727463 Msa0404840:intron 45.0%
ACCTTCAAGAGTGGTTGGAA+TGG - chr3_2:37727532-37727551 Msa0404840:intron 45.0%
TCCATTCCAACCACTCTTGA+AGG + chr3_2:37727536-37727555 None:intergenic 45.0%
ATCACGATCCGACGTATAAC+CGG - chr3_2:37728148-37728167 Msa0404840:intron 45.0%
ACCTGATGTTTCACTGCCTA+CGG + chr3_2:37728197-37728216 None:intergenic 45.0%
AACCTCTTCAACATGGGAGT+TGG - chr3_2:37728247-37728266 Msa0404840:intron 45.0%
TACCAACTCCCATGTTGAAG+AGG + chr3_2:37728252-37728271 None:intergenic 45.0%
!! TAAGAGTGTTTGGGGTGTGA+AGG - chr3_2:37728441-37728460 Msa0404840:CDS 45.0%
ACATCAGAACACTTCCAAGG+TGG + chr3_2:37728568-37728587 None:intergenic 45.0%
! GCACTGACACTTCAGATTGA+AGG - chr3_2:37728683-37728702 Msa0404840:CDS 45.0%
ATACAGACACCGAACACAAC+AGG + chr3_2:37728815-37728834 None:intergenic 45.0%
!! GAAAAAATAAAAAAATAAAA+AGG + chr3_2:37722786-37722805 None:intergenic 5.0%
!!! TTTAATAATTTTTCTATTTA+AGG - chr3_2:37723561-37723580 Msa0404840:intron 5.0%
!! AAATATTATATATTATAATG+GGG + chr3_2:37723772-37723791 None:intergenic 5.0%
!! CAAATATTATATATTATAAT+GGG + chr3_2:37723773-37723792 None:intergenic 5.0%
!! ACAAATATTATATATTATAA+TGG + chr3_2:37723774-37723793 None:intergenic 5.0%
!! AAAAATAAAAATAAAAACTA+TGG - chr3_2:37724476-37724495 Msa0404840:intron 5.0%
!! TATATATATATATATATATG+GGG + chr3_2:37726855-37726874 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG - chr3_2:37726855-37726874 Msa0404840:intron 5.0%
!!! ATTATTGATATTTTTTATTA+CGG + chr3_2:37727609-37727628 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG + chr3_2:37727802-37727821 None:intergenic 5.0%
!! TATATATATATATATATGTT+TGG - chr3_2:37727823-37727842 Msa0404840:intron 5.0%
AAGCTAGGTGGAGTGAGTAG+TGG + chr3_2:37722345-37722364 None:intergenic 50.0%
GGAAGAGGAGGAAAGTTGAG+GGG + chr3_2:37722423-37722442 None:intergenic 50.0%
CACTATGCCGGAACATGTTG+TGG + chr3_2:37722488-37722507 None:intergenic 50.0%
! TTATGGAAATCGTGTCGGCG+CGG + chr3_2:37722522-37722541 None:intergenic 50.0%
! ATAACCGATTTCGGCGGTGT+CGG - chr3_2:37722538-37722557 Msa0404840:CDS 50.0%
CGGCAGAACGTTGAACTCAA+AGG - chr3_2:37722564-37722583 Msa0404840:CDS 50.0%
! ACACACCAGGAGGCACATAA+AGG + chr3_2:37722645-37722664 None:intergenic 50.0%
GCCTCCTGGTGTGTACTTAA+CGG - chr3_2:37722651-37722670 Msa0404840:CDS 50.0%
TCCGTTAAGTACACACCAGG+AGG + chr3_2:37722655-37722674 None:intergenic 50.0%
CTCTCCGTTAAGTACACACC+AGG + chr3_2:37722658-37722677 None:intergenic 50.0%
!!! ATCAGTGGTGGTGGGTCTTT+TGG - chr3_2:37724524-37724543 Msa0404840:intron 50.0%
!! TTAGGTGCCATTGGTGCCAT+TGG - chr3_2:37724592-37724611 Msa0404840:intron 50.0%
!! TGGTGCCATTGGAGAAATCC+TGG - chr3_2:37724603-37724622 Msa0404840:intron 50.0%
AACGGCCAGGATTTCTCCAA+TGG + chr3_2:37724611-37724630 None:intergenic 50.0%
ATTCACACACATCAACGGCC+AGG + chr3_2:37724624-37724643 None:intergenic 50.0%
GTGTGTGATGTGTGTGTGTG+TGG - chr3_2:37724658-37724677 Msa0404840:intron 50.0%
TGTGATGTGTGTGTGTGTGG+TGG - chr3_2:37724661-37724680 Msa0404840:intron 50.0%
CACCAAAGTGGTTCCCGAAT+GGG - chr3_2:37724721-37724740 Msa0404840:intron 50.0%
ACCAAAGTGGTTCCCGAATG+GGG - chr3_2:37724722-37724741 Msa0404840:intron 50.0%
GTTCGCGATGTGATCATCAC+AGG - chr3_2:37725477-37725496 Msa0404840:intron 50.0%
GCGATGTGATCATCACAGGT+AGG - chr3_2:37725481-37725500 Msa0404840:intron 50.0%
ATGGGCAAGGAGATGTATGG+TGG - chr3_2:37726049-37726068 Msa0404840:intron 50.0%
TCTCAATCAACGCAGGTGCA+AGG - chr3_2:37727122-37727141 Msa0404840:intron 50.0%
AGATCCTAACGGAGTGATGG+TGG - chr3_2:37727447-37727466 Msa0404840:intron 50.0%
GAAGAAGGGACCTTCAAGAG+TGG - chr3_2:37727523-37727542 Msa0404840:intron 50.0%
AAGGGACCTTCAAGAGTGGT+TGG - chr3_2:37727527-37727546 Msa0404840:intron 50.0%
GATCTTGTGGCTGTGAAGAG+TGG - chr3_2:37728082-37728101 Msa0404840:intron 50.0%
TTGTGGCTGTGAAGAGTGGA+TGG - chr3_2:37728086-37728105 Msa0404840:intron 50.0%
TGTGGCTGTGAAGAGTGGAT+GGG - chr3_2:37728087-37728106 Msa0404840:intron 50.0%
TCGTGATGCCATTGCTAGGA+CGG + chr3_2:37728135-37728154 None:intergenic 50.0%
GAGACGATCCGGTTATACGT+CGG + chr3_2:37728159-37728178 None:intergenic 50.0%
GTAGGCAGTGAAACATCAGG+TGG - chr3_2:37728196-37728215 Msa0404840:intron 50.0%
! TGGTGATGTAGGTGACCATC+CGG - chr3_2:37728369-37728388 Msa0404840:intron 50.0%
! GGTGTGAAGGTTTTGCAAGC+TGG - chr3_2:37728454-37728473 Msa0404840:CDS 50.0%
GATCAGGTAGATCTCCACCT+TGG - chr3_2:37728551-37728570 Msa0404840:CDS 50.0%
GAGGAGGAAAGTTGAGGGGA+TGG + chr3_2:37722419-37722438 None:intergenic 55.0%
GACACCGCCGAAATCGGTTA+TGG + chr3_2:37722539-37722558 None:intergenic 55.0%
CAGCACTTAAGGAGACGTGG+TGG - chr3_2:37722613-37722632 Msa0404840:CDS 55.0%
ACGCTCCTTTATGTGCCTCC+TGG - chr3_2:37722637-37722656 Msa0404840:CDS 55.0%
! GGTGGGTCTTTTGGTCTGCA+TGG - chr3_2:37724533-37724552 Msa0404840:intron 55.0%
GCACCAAAGTGGTTCCCGAA+TGG - chr3_2:37724720-37724739 Msa0404840:intron 55.0%
TCCCCATTCGGGAACCACTT+TGG + chr3_2:37724726-37724745 None:intergenic 55.0%
AAGTGGTTCCCGAATGGGGA+TGG - chr3_2:37724726-37724745 Msa0404840:intron 55.0%
GTGAGGAAATGTGGCCGATG+CGG - chr3_2:37725624-37725643 Msa0404840:intron 55.0%
TCAGTGTTAGGAGAGTCGCG+AGG + chr3_2:37726374-37726393 None:intergenic 55.0%
CGCGACTCTCCTAACACTGA+TGG - chr3_2:37726374-37726393 Msa0404840:intron 55.0%
!! TCCTAACGGAGTGATGGTGG+AGG - chr3_2:37727450-37727469 Msa0404840:intron 55.0%
!! CCTAACGGAGTGATGGTGGA+GGG - chr3_2:37727451-37727470 Msa0404840:intron 55.0%
CTCCAGCTTGAAGCCAGTGA+CGG - chr3_2:37727500-37727519 Msa0404840:intron 55.0%
TCCAGCTTGAAGCCAGTGAC+GGG - chr3_2:37727501-37727520 Msa0404840:intron 55.0%
! TGAAGCCAGTGACGGGAAGA+AGG - chr3_2:37727508-37727527 Msa0404840:intron 55.0%
! GAAGCCAGTGACGGGAAGAA+GGG - chr3_2:37727509-37727528 Msa0404840:intron 55.0%
TCATACGGCCGTCCTAGCAA+TGG - chr3_2:37728124-37728143 Msa0404840:intron 55.0%
CGGATCGTGATGCCATTGCT+AGG + chr3_2:37728139-37728158 None:intergenic 55.0%
ACCGGATCGTCTCCATTTGC+CGG - chr3_2:37728166-37728185 Msa0404840:intron 55.0%
TTCACTGCCTACGGCAATGC+CGG + chr3_2:37728188-37728207 None:intergenic 55.0%
GCCGTAGGCAGTGAAACATC+AGG - chr3_2:37728193-37728212 Msa0404840:intron 55.0%
CTGATCCCGTCTCACCATGA+AGG + chr3_2:37728537-37728556 None:intergenic 55.0%
CTTCATGGTGAGACGGGATC+AGG - chr3_2:37728535-37728554 Msa0404840:CDS 55.0%
CTCAGCTGAGAACATGGCCA+AGG + chr3_2:37728616-37728635 None:intergenic 55.0%
TGGCTGCTCAGCTGAGAACA+TGG + chr3_2:37728622-37728641 None:intergenic 55.0%
TGGTACAAGACCCAGGCTCT+TGG + chr3_2:37728642-37728661 None:intergenic 55.0%
TGCCGGTGTCCTGTTGTGTT+CGG - chr3_2:37728803-37728822 Msa0404840:five_prime_UTR 55.0%
CACCGAACACAACAGGACAC+CGG + chr3_2:37728808-37728827 None:intergenic 55.0%
GTGTCGGAACGGCACTATGC+CGG + chr3_2:37722500-37722519 None:intergenic 60.0%
! AAATCGTGTCGGCGCGGTGT+CGG + chr3_2:37722516-37722535 None:intergenic 60.0%
!! ATGGTGGGCCTGAGCCTGAA+AGG - chr3_2:37724495-37724514 Msa0404840:intron 60.0%
CCCTCCACCATCACTCCGTT+AGG + chr3_2:37727454-37727473 None:intergenic 60.0%
!! AACGGAGTGATGGTGGAGGG+TGG - chr3_2:37727454-37727473 Msa0404840:intron 60.0%
!! TCCCGTCACTGGCTTCAAGC+TGG + chr3_2:37727505-37727524 None:intergenic 60.0%
AGGTCCCTTCTTCCCGTCAC+TGG + chr3_2:37727516-37727535 None:intergenic 60.0%
GCCGGCAAATGGAGACGATC+CGG + chr3_2:37728170-37728189 None:intergenic 60.0%
CCTACGGCAATGCCGGCAAA+TGG + chr3_2:37728181-37728200 None:intergenic 60.0%
CCATTTGCCGGCATTGCCGT+AGG - chr3_2:37728178-37728197 Msa0404840:intron 60.0%
AGCTGAGCAGCCAAGAGCCT+GGG - chr3_2:37728629-37728648 Msa0404840:CDS 60.0%
GTCGCCGACACCGCCGAAAT+CGG + chr3_2:37722545-37722564 None:intergenic 65.0%
!! GATTTCGGCGGTGTCGGCGA+CGG - chr3_2:37722544-37722563 Msa0404840:CDS 65.0%
GGAAGAGGAAGGGAGCTCCC+AGG - chr3_2:37725420-37725439 Msa0404840:intron 65.0%
AGAGGAAGGGAGCTCCCAGG+AGG - chr3_2:37725423-37725442 Msa0404840:intron 65.0%
GAAGGGAGCTCCCAGGAGGA+AGG - chr3_2:37725427-37725446 Msa0404840:intron 65.0%
CATCGCGAACTCCATCGCCG+TGG + chr3_2:37725467-37725486 None:intergenic 65.0%
CAGCTGAGCAGCCAAGAGCC+TGG - chr3_2:37728628-37728647 Msa0404840:CDS 65.0%
! GTGTCGGCGCGGTGTCGGAA+CGG + chr3_2:37722511-37722530 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 37722181 37728985 37722181 ID=Msa0404840;Name=Msa0404840
chr3_2 mRNA 37722181 37728985 37722181 ID=Msa0404840-mRNA-1;Parent=Msa0404840;Name=Msa0404840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=213|1|1|1|1|1|5|313|451
chr3_2 exon 37722181 37723134 37722181 ID=Msa0404840-mRNA-1:exon:7543;Parent=Msa0404840-mRNA-1
chr3_2 exon 37724759 37724829 37724759 ID=Msa0404840-mRNA-1:exon:7542;Parent=Msa0404840-mRNA-1
chr3_2 exon 37724961 37725135 37724961 ID=Msa0404840-mRNA-1:exon:7541;Parent=Msa0404840-mRNA-1
chr3_2 exon 37725668 37725788 37725668 ID=Msa0404840-mRNA-1:exon:7540;Parent=Msa0404840-mRNA-1
chr3_2 exon 37728425 37728985 37728425 ID=Msa0404840-mRNA-1:exon:7539;Parent=Msa0404840-mRNA-1
chr3_2 five_prime_UTR 37728773 37728985 37728773 ID=Msa0404840-mRNA-1:five_prime_utr;Parent=Msa0404840-mRNA-1
chr3_2 CDS 37728425 37728772 37728425 ID=Msa0404840-mRNA-1:cds;Parent=Msa0404840-mRNA-1
chr3_2 CDS 37725668 37725788 37725668 ID=Msa0404840-mRNA-1:cds;Parent=Msa0404840-mRNA-1
chr3_2 CDS 37724961 37725135 37724961 ID=Msa0404840-mRNA-1:cds;Parent=Msa0404840-mRNA-1
chr3_2 CDS 37724759 37724829 37724759 ID=Msa0404840-mRNA-1:cds;Parent=Msa0404840-mRNA-1
chr3_2 CDS 37722494 37723134 37722494 ID=Msa0404840-mRNA-1:cds;Parent=Msa0404840-mRNA-1
chr3_2 three_prime_UTR 37722181 37722493 37722181 ID=Msa0404840-mRNA-1:three_prime_utr;Parent=Msa0404840-mRNA-1
Gene Sequence

>Msa0404840

ATGCATCTTCTCTCAAAATCTTCCATCCCCTCAACTTTCCTCCTCTTCCTTATTTTCTTCTCCTATTTCTCTTATATCTCTGCCTCATATTCCACAACATGTTCCGGCATAGTGCCGTTCCGACACCGCGCCGACACGATTTCCATAACCGATTTCGGCGGTGTCGGCGACGGCAGAACGTTGAACTCAAAGGCATTCAGGGCAGCTATTTATAGGATTCAGCACTTAAGGAGACGTGGTGGCACGCTCCTTTATGTGCCTCCTGGTGTGTACTTAACGGAGAGCTTCAATCTCACTAGTCATATGACTCTTTATCTTGCTGCTGGTGCTGTTATTAAAGCCACACAGAGGTTATGGAATTGGCCTTTAATTGCACCTTTACCATCTTATGGAAGAGGAAGGGAGCTCCCAGGAGGAAGGTATATCAGTTTTATCCACGGCGATGGAGTTCGCGATGTGATCATCACAGGTGAGAATGGAACAATTGATGGGCAAGGAGATGTATGGTGGAACATGTGGAGGCAGAGAACTCTTCAATTTACAAGACCAAACCTTGTTGAATTTTTGAATTCCAGAAATATTATTATTTCAAATGTTATTTTCAAGAATTCTCCCTTCTGGAATATACATCCAGTTTACTGCAGCAATGTTGTTGTCCGATATGTCACGATTTTGGCTCCTCGCGACTCTCCTAACACTGATGGAATTGACCCAGATTCAAGTTCAAATGTCTGCATAGAGGACTCATACATATCAACAGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGATGAATACGGTATTTCATACGGCCGTCCTAGCAATGGCATCACGATCCGACGTATAACCGGATCGTCTCCATTTGCCGGCATTGCCGTAGGCAGTGAAACATCAGGTGGAGTACAGAATGTACTCGCCGAGCATATCAACCTCTTCAACATGGGAGTTGGTATCCACATTAAGACAAACATTGGAAGAGGAGGACTTATCAAGAATATAACAGTGTCTAATGTGTATATAGAAAATTCAAGGCAAGGAATTAAAATTGCTGGTGATGTAGGTGACCATCCGGATGAAAAATTTAACCCTAATGCTCTACCAGTTGTGAAGGGAATTACAATTAAGAGTGTTTGGGGTGTGAAGGTTTTGCAAGCTGGTTTGATACATGGTTTGAGAAATTCACCTTTTACTGAGATTTGTTTCTATGATATTAACCTTCATGGTGAGACGGGATCAGGTAGATCTCCACCTTGGAAGTGTTCTGATGTTTTTGGATTTTCACAAAAGGTTAGTCCTTGGCCATGTTCTCAGCTGAGCAGCCAAGAGCCTGGGTCTTGTACCAATTATTCATGA
Protein sequence

>Msa0404840

MHLLSKSSIPSTFLLFLIFFSYFSYISASYSTTCSGIVPFRHRADTISITDFGGVGDGRTLNSKAFRAAIYRIQHLRRRGGTLLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQRLWNWPLIAPLPSYGRGRELPGGRYISFIHGDGVRDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLVEFLNSRNIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGISYGRPSNGITIRRITGSSPFAGIAVGSETSGGVQNVLAEHINLFNMGVGIHIKTNIGRGGLIKNITVSNVYIENSRQGIKIAGDVGDHPDEKFNPNALPVVKGITIKSVWGVKVLQAGLIHGLRNSPFTEICFYDINLHGETGSGRSPPWKCSDVFGFSQKVSPWPCSQLSSQEPGSCTNYS*