AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146570 MtrunA17_Chr1g0155591 96.667 240 8 0 1 240 1 240 3.51e-176 483
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146570 AT1G35180.1 62.719 228 83 1 2 227 3 230 5.16e-110 316
Msa0146570 AT1G35170.1 63.033 211 76 1 16 226 19 227 3.24e-100 291
Msa0146570 AT1G45010.1 62.115 227 84 1 2 226 3 229 5.25e-100 291
Msa0146570 AT1G35170.4 62.431 181 68 0 16 196 19 199 1.39e-84 251
Msa0146570 AT1G45010.3 60.622 193 74 1 2 192 3 195 1.50e-81 243
Msa0146570 AT1G45010.2 64.706 153 54 0 74 226 1 153 7.88e-73 219
Msa0146570 AT1G35170.2 65.753 146 50 0 16 161 19 164 2.24e-71 216
Msa0146570 AT1G35170.3 65.753 146 50 0 16 161 19 164 2.24e-71 216
Msa0146570 AT1G45010.4 62.346 162 59 1 2 161 3 164 1.28e-68 209

Find 75 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAATCTGAATGATTTA+TGG 0.135522 1_4:-6270564 None:intergenic
GAGAAATCAAATGAACATTT+TGG 0.163912 1_4:-6267473 None:intergenic
TTACATCTGCAGTCAAATTA+AGG 0.189859 1_4:-6269067 None:intergenic
TATTCATTGGACAATAATTT+AGG 0.228489 1_4:+6270323 Msa0146570:three_prime_UTR
TGATGCGATAACATCATATT+TGG 0.229936 1_4:+6270405 Msa0146570:three_prime_UTR
CTTGATGAGAAATGGGTTAT+TGG 0.254552 1_4:-6269897 None:intergenic
TTTGAAGCCACTGGACAAAT+TGG 0.271253 1_4:-6267572 None:intergenic
TTTGGATGATGATGATTTCT+TGG 0.316280 1_4:-6270124 None:intergenic
GTCCCACAATGCTTACTAAA+TGG 0.321372 1_4:-6267833 None:intergenic
ATTTCATAGCTATATTTATA+CGG 0.323646 1_4:+6267033 None:intergenic
CTACTTTATCTGTTCAAGAT+TGG 0.324800 1_4:+6267543 Msa0146570:CDS
ATTCTACATCAATCAGTGTT+TGG 0.326066 1_4:+6270201 Msa0146570:three_prime_UTR
TATTATACCTTGATGAGAAA+TGG 0.337195 1_4:-6269905 None:intergenic
ATTTGATCAGATGGAAGTTC+TGG 0.337359 1_4:+6267731 Msa0146570:intron
CAGAGATGGTGGGAGCAGTA+TGG 0.350230 1_4:+6268973 Msa0146570:CDS
TTTCGTACATATATATTCAT+TGG 0.352894 1_4:+6270310 Msa0146570:three_prime_UTR
TGCAGCTGGTAAGTACATTC+TGG 0.354832 1_4:+6270064 Msa0146570:CDS
CTATTACAGGCTATGGGATT+GGG 0.373800 1_4:+6270039 Msa0146570:intron
CATTTCACAAGCTTTGAGTT+TGG 0.374521 1_4:+6270448 Msa0146570:three_prime_UTR
TTCTACATCAATCAGTGTTT+GGG 0.376016 1_4:+6270202 Msa0146570:three_prime_UTR
TTGAAGAGAATATAGAGAAA+TGG 0.376482 1_4:+6267373 Msa0146570:exon
AATCTGAATGATTTATGGTT+AGG 0.380485 1_4:-6270559 None:intergenic
ACAATAATTTAGGAGGAGAT+TGG 0.391152 1_4:+6270333 Msa0146570:three_prime_UTR
ACATTTGCTAGGATGATGAT+TGG 0.391517 1_4:+6269845 Msa0146570:CDS
AATACTTTATTATACAACTA+TGG 0.392789 1_4:-6267230 None:intergenic
TACATCTGCAGTCAAATTAA+GGG 0.403745 1_4:-6269066 None:intergenic
AAGTACTTTATATCATTCAT+TGG 0.414126 1_4:-6270237 None:intergenic
ATTATACCTTGATGAGAAAT+GGG 0.416729 1_4:-6269904 None:intergenic
AGCTCCCTCAAATGCAAGAA+TGG 0.423674 1_4:-6269014 None:intergenic
ACTATTACAGGCTATGGGAT+TGG 0.428555 1_4:+6270038 Msa0146570:intron
GTTCATTTGATTTCTCCAAC+AGG 0.436461 1_4:+6267480 Msa0146570:CDS
TTCAAATTCTTCTTACAGAC+AGG 0.438036 1_4:+6267589 Msa0146570:CDS
CAAGCCCATTCTTGCATTTG+AGG 0.445389 1_4:+6269009 Msa0146570:CDS
TCTAAAGGAGCTTGGTTACA+AGG 0.454047 1_4:+6269037 Msa0146570:CDS
GCATTTGAGGGAGCTTCTAA+AGG 0.464317 1_4:+6269022 Msa0146570:CDS
AAGCCCATTCTTGCATTTGA+GGG 0.465855 1_4:+6269010 Msa0146570:CDS
CACCATTTAGTAAGCATTGT+GGG 0.466117 1_4:+6267831 Msa0146570:CDS
CAATAACCCATTTCTCATCA+AGG 0.469006 1_4:+6269898 Msa0146570:CDS
TATGGGATTGGGTTTGCAGC+TGG 0.477409 1_4:+6270050 Msa0146570:CDS
AGCATTGTGGGACTGATAGC+TGG 0.478228 1_4:+6267843 Msa0146570:CDS
GCTCCCTCAAATGCAAGAAT+GGG 0.481370 1_4:-6269013 None:intergenic
ACACCACCAACATCAAAAGC+AGG 0.487485 1_4:+6270160 Msa0146570:CDS
CTTCGACTATTACAGGCTAT+GGG 0.490448 1_4:+6270033 Msa0146570:intron
ATGCTATGGTTGCATCTAAG+AGG 0.491529 1_4:-6267166 None:intergenic
AGGGAGCTTCTAAAGGAGCT+TGG 0.499104 1_4:+6269029 Msa0146570:CDS
ATTGACTCTATTCCACTTGG+TGG 0.502846 1_4:-6270510 None:intergenic
TAAGAAGAATTTGAAGCCAC+TGG 0.506715 1_4:-6267581 None:intergenic
ACAAGCAAAATAATGATTGA+AGG 0.508742 1_4:-6270270 None:intergenic
AGCTGGCTTATGCTATCAAA+AGG 0.510458 1_4:+6267860 Msa0146570:CDS
CTTCAATATTTACATTTGCT+AGG 0.511008 1_4:+6269834 Msa0146570:CDS
AGAGATGGTGGGAGCAGTAT+GGG 0.512111 1_4:+6268974 Msa0146570:CDS
GTGAAAGCAAAATTTGTGAA+TGG 0.514429 1_4:-6270615 None:intergenic
TAAGAGAATATGCTATGCTA+TGG 0.517220 1_4:-6267180 None:intergenic
ATTCAAAAGACAATTGTGGT+TGG 0.543048 1_4:+6267404 Msa0146570:CDS
CTAATTGACTCTATTCCACT+TGG 0.545263 1_4:-6270513 None:intergenic
GATCATAAATTAGATATGAC+AGG 0.545515 1_4:-6267761 None:intergenic
TCATTGGACAATAATTTAGG+AGG 0.547156 1_4:+6270326 Msa0146570:three_prime_UTR
CAAGCAAAATAATGATTGAA+GGG 0.550272 1_4:-6270269 None:intergenic
TGCTATGGTTGCATCTAAGA+GGG 0.555572 1_4:-6267165 None:intergenic
ATTGGAAGTTAATGTTACGT+AGG 0.557867 1_4:-6269879 None:intergenic
AATTGTAGAGACAATCCTGT+TGG 0.571539 1_4:-6267495 None:intergenic
TTCATCAAGATTCCACCAAG+TGG 0.577786 1_4:+6270498 Msa0146570:three_prime_UTR
ACTTTATTATACAACTATGG+TGG 0.581264 1_4:-6267227 None:intergenic
GAAATGTCCAATTTGTCCAG+TGG 0.588096 1_4:+6267565 Msa0146570:CDS
CCACAATGCTTACTAAATGG+TGG 0.601229 1_4:-6267830 None:intergenic
CCACCATTTAGTAAGCATTG+TGG 0.612304 1_4:+6267830 Msa0146570:CDS
AATGTTACGTAGGTGATACA+AGG 0.616770 1_4:-6269869 None:intergenic
ATATATTCAAAAGACAATTG+TGG 0.625016 1_4:+6267400 Msa0146570:CDS
ACATCTGCAGTCAAATTAAG+GGG 0.627723 1_4:-6269065 None:intergenic
TGATATAAAGTACTTCAAAG+TGG 0.630502 1_4:+6270245 Msa0146570:three_prime_UTR
AAGCAAAATAATGATTGAAG+GGG 0.632171 1_4:-6270268 None:intergenic
TCAGTGTGGCTCAGAGATGG+TGG 0.640532 1_4:+6268962 Msa0146570:intron
CAGTGTGGCTCAGAGATGGT+GGG 0.652161 1_4:+6268963 Msa0146570:intron
TGATCAGTGTGGCTCAGAGA+TGG 0.653705 1_4:+6268959 Msa0146570:intron
GCTATGGTTGCATCTAAGAG+GGG 0.683081 1_4:-6267164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTTTTAAAAATTT+TGG - chr1_4:6269662-6269681 None:intergenic 0.0%
!! TTAAAATAAAATATGCAAAT+TGG - chr1_4:6268848-6268867 None:intergenic 10.0%
!! GTACAAAATAAATAAATATT+TGG - chr1_4:6269115-6269134 None:intergenic 10.0%
!!! GTTTAAAATATAAAAACTAA+GGG - chr1_4:6269949-6269968 None:intergenic 10.0%
!!! TGTTTAAAATATAAAAACTA+AGG - chr1_4:6269950-6269969 None:intergenic 10.0%
!! AATACTTTATTATACAACTA+TGG - chr1_4:6267233-6267252 None:intergenic 15.0%
!! ATATATCATTTGTACTTAAT+TGG + chr1_4:6267685-6267704 Msa0146570:intron 15.0%
!! TATTTGATGAAAAATTCAAT+TGG + chr1_4:6267796-6267815 Msa0146570:CDS 15.0%
!! ATTTGATGAAAAATTCAATT+GGG + chr1_4:6267797-6267816 Msa0146570:CDS 15.0%
!!! CTCAAAAATCTAATATTTTA+AGG + chr1_4:6268508-6268527 Msa0146570:intron 15.0%
!!! AATCTAATATTTTAAGGTTT+TGG + chr1_4:6268514-6268533 Msa0146570:intron 15.0%
!! TTTAATAATATGATACTCAT+TGG + chr1_4:6269984-6270003 Msa0146570:intron 15.0%
!! TAGATAAATAGAAACTTCAA+TGG - chr1_4:6267273-6267292 None:intergenic 20.0%
!! ATATATTCAAAAGACAATTG+TGG + chr1_4:6267400-6267419 Msa0146570:CDS 20.0%
!! AAACTCTAAATTATTCTAAC+AGG - chr1_4:6268055-6268074 None:intergenic 20.0%
!! TCAAGAAATTTAATGCATTA+AGG + chr1_4:6268143-6268162 Msa0146570:intron 20.0%
!!! ATTCTATCCAACTTTTTATT+GGG - chr1_4:6268623-6268642 None:intergenic 20.0%
!!! AATTCTATCCAACTTTTTAT+TGG - chr1_4:6268624-6268643 None:intergenic 20.0%
!! AAACATTTAATCTATCTACA+TGG - chr1_4:6268767-6268786 None:intergenic 20.0%
!! ATGTAGATAGATTAAATGTT+TGG + chr1_4:6268766-6268785 Msa0146570:intron 20.0%
!!! CTTTTGTGTTAATTAATATG+AGG + chr1_4:6268898-6268917 Msa0146570:intron 20.0%
!! TGTTAATTAATATGAGGATT+TGG + chr1_4:6268904-6268923 Msa0146570:intron 20.0%
!!! TTTGGTTGATTTAAAAATAG+AGG - chr1_4:6269252-6269271 None:intergenic 20.0%
!! ATTGAAAATAGAACTAGATT+TGG - chr1_4:6269270-6269289 None:intergenic 20.0%
!! AATGGAAAAACAAGATATTT+AGG - chr1_4:6269302-6269321 None:intergenic 20.0%
!!! AATAGTTTGAAACAATATGA+TGG + chr1_4:6269539-6269558 Msa0146570:intron 20.0%
!! TTATAAATCATGACACTAAT+TGG - chr1_4:6269715-6269734 None:intergenic 20.0%
!! AAGTACTTTATATCATTCAT+TGG - chr1_4:6270240-6270259 None:intergenic 20.0%
!! TTTCGTACATATATATTCAT+TGG + chr1_4:6270310-6270329 Msa0146570:three_prime_UTR 20.0%
!! TATTCATTGGACAATAATTT+AGG + chr1_4:6270323-6270342 Msa0146570:three_prime_UTR 20.0%
! ACTTTATTATACAACTATGG+TGG - chr1_4:6267230-6267249 None:intergenic 25.0%
! TTGAAGAGAATATAGAGAAA+TGG + chr1_4:6267373-6267392 Msa0146570:exon 25.0%
!! GAGAAATCAAATGAACATTT+TGG - chr1_4:6267476-6267495 None:intergenic 25.0%
!! ATGTTTGAAATTTGATCAGA+TGG + chr1_4:6267722-6267741 Msa0146570:intron 25.0%
! GATCATAAATTAGATATGAC+AGG - chr1_4:6267764-6267783 None:intergenic 25.0%
!!! TGAGTGTTGAAAATATGTAA+AGG + chr1_4:6268115-6268134 Msa0146570:intron 25.0%
! TCAAACTCAATGGTTAATAA+AGG + chr1_4:6268263-6268282 Msa0146570:intron 25.0%
! CAAACTCAATGGTTAATAAA+GGG + chr1_4:6268264-6268283 Msa0146570:intron 25.0%
! AAACTCAATGGTTAATAAAG+GGG + chr1_4:6268265-6268284 Msa0146570:intron 25.0%
!!! AGGTTTTGGATAAAAAAATG+TGG + chr1_4:6268528-6268547 Msa0146570:intron 25.0%
!!! CAAGTTTGCTAGTAAAATTT+TGG + chr1_4:6268793-6268812 Msa0146570:intron 25.0%
! ATGTAAGTAAACCACTATTA+AGG + chr1_4:6269084-6269103 Msa0146570:intron 25.0%
! TAAGAAAGTGATAGAGTTTA+CGG + chr1_4:6269162-6269181 Msa0146570:intron 25.0%
!!! TGTTGAGCAAGTAATTTTTT+TGG + chr1_4:6269214-6269233 Msa0146570:intron 25.0%
!!! TCATCTGTTAGCTTATTTTA+AGG - chr1_4:6269789-6269808 None:intergenic 25.0%
! CTTCAATATTTACATTTGCT+AGG + chr1_4:6269834-6269853 Msa0146570:CDS 25.0%
! ATTATACCTTGATGAGAAAT+GGG - chr1_4:6269907-6269926 None:intergenic 25.0%
! TATTATACCTTGATGAGAAA+TGG - chr1_4:6269908-6269927 None:intergenic 25.0%
! AAATCATCATCATCCAAAAA+TGG + chr1_4:6270129-6270148 Msa0146570:CDS 25.0%
!! TGATATAAAGTACTTCAAAG+TGG + chr1_4:6270245-6270264 Msa0146570:three_prime_UTR 25.0%
! AAGCAAAATAATGATTGAAG+GGG - chr1_4:6270271-6270290 None:intergenic 25.0%
! CAAGCAAAATAATGATTGAA+GGG - chr1_4:6270272-6270291 None:intergenic 25.0%
! ACAAGCAAAATAATGATTGA+AGG - chr1_4:6270273-6270292 None:intergenic 25.0%
! AATCTGAATGATTTATGGTT+AGG - chr1_4:6270562-6270581 None:intergenic 25.0%
! GACAAAATCTGAATGATTTA+TGG - chr1_4:6270567-6270586 None:intergenic 25.0%
TAAGAGAATATGCTATGCTA+TGG - chr1_4:6267183-6267202 None:intergenic 30.0%
ATTCAAAAGACAATTGTGGT+TGG + chr1_4:6267404-6267423 Msa0146570:CDS 30.0%
! CAACAACTTTTCTTGTAATG+AGG + chr1_4:6267441-6267460 Msa0146570:CDS 30.0%
!! TGCAATTTTAGCAGTAACAT+TGG + chr1_4:6267520-6267539 Msa0146570:CDS 30.0%
CTACTTTATCTGTTCAAGAT+TGG + chr1_4:6267543-6267562 Msa0146570:CDS 30.0%
TTCAAATTCTTCTTACAGAC+AGG + chr1_4:6267589-6267608 Msa0146570:CDS 30.0%
!! TAGTTGAAAGTGTTGTGAAT+TGG + chr1_4:6268083-6268102 Msa0146570:intron 30.0%
AGATATCCAACTCATTTATG+TGG + chr1_4:6268182-6268201 Msa0146570:intron 30.0%
AAACAACCACATAAATGAGT+TGG - chr1_4:6268191-6268210 None:intergenic 30.0%
TGTTACACCCAATAAAAAGT+TGG + chr1_4:6268613-6268632 Msa0146570:intron 30.0%
!! AATATGAGGATTTGGTGATA+AGG + chr1_4:6268912-6268931 Msa0146570:intron 30.0%
CTATAAACATATGATCAGTG+TGG + chr1_4:6268948-6268967 Msa0146570:intron 30.0%
TACATCTGCAGTCAAATTAA+GGG - chr1_4:6269069-6269088 None:intergenic 30.0%
TTACATCTGCAGTCAAATTA+AGG - chr1_4:6269070-6269089 None:intergenic 30.0%
ATTTGGTATGTCCTTAATAG+TGG - chr1_4:6269098-6269117 None:intergenic 30.0%
ATTACACATGCAATGTTCTT+TGG - chr1_4:6269137-6269156 None:intergenic 30.0%
GTTTAGGTATATCTTATTCC+AGG + chr1_4:6269184-6269203 Msa0146570:intron 30.0%
CATTTCTTAGCATGTAAGAA+TGG + chr1_4:6269436-6269455 Msa0146570:intron 30.0%
AGTTAGAAGAAGGAAAACTT+TGG + chr1_4:6269461-6269480 Msa0146570:intron 30.0%
ATTGGAAGTTAATGTTACGT+AGG - chr1_4:6269882-6269901 None:intergenic 30.0%
! TTTGGATGATGATGATTTCT+TGG - chr1_4:6270127-6270146 None:intergenic 30.0%
ATTCTACATCAATCAGTGTT+TGG + chr1_4:6270201-6270220 Msa0146570:three_prime_UTR 30.0%
TTCTACATCAATCAGTGTTT+GGG + chr1_4:6270202-6270221 Msa0146570:three_prime_UTR 30.0%
TCATTGGACAATAATTTAGG+AGG + chr1_4:6270326-6270345 Msa0146570:three_prime_UTR 30.0%
ACAATAATTTAGGAGGAGAT+TGG + chr1_4:6270333-6270352 Msa0146570:three_prime_UTR 30.0%
TGATGCGATAACATCATATT+TGG + chr1_4:6270405-6270424 Msa0146570:three_prime_UTR 30.0%
GTGAAAGCAAAATTTGTGAA+TGG - chr1_4:6270618-6270637 None:intergenic 30.0%
!!! TTGTGGTTGGAGTTTTTTCA+TGG + chr1_4:6267417-6267436 Msa0146570:CDS 35.0%
! GTTCATTTGATTTCTCCAAC+AGG + chr1_4:6267480-6267499 Msa0146570:CDS 35.0%
AATTGTAGAGACAATCCTGT+TGG - chr1_4:6267498-6267517 None:intergenic 35.0%
! TAAGAAGAATTTGAAGCCAC+TGG - chr1_4:6267584-6267603 None:intergenic 35.0%
ATTTGATCAGATGGAAGTTC+TGG + chr1_4:6267731-6267750 Msa0146570:intron 35.0%
! CACCATTTAGTAAGCATTGT+GGG + chr1_4:6267831-6267850 Msa0146570:CDS 35.0%
!! TTGAAAGTGTTGTGAATTGG+AGG + chr1_4:6268086-6268105 Msa0146570:intron 35.0%
!!! TGGTTGTTTTTGACTCAATG+TGG + chr1_4:6268202-6268221 Msa0146570:intron 35.0%
!!! GGTTGTTTTTGACTCAATGT+GGG + chr1_4:6268203-6268222 Msa0146570:intron 35.0%
GAAATTCTTTCCGACAATAG+TGG + chr1_4:6268303-6268322 Msa0146570:intron 35.0%
AATGGATGATCTTACGTTTG+AGG + chr1_4:6268418-6268437 Msa0146570:intron 35.0%
ATGGATGATCTTACGTTTGA+GGG + chr1_4:6268419-6268438 Msa0146570:intron 35.0%
ATTGTTGTGTCAAGTGTGAT+TGG + chr1_4:6268446-6268465 Msa0146570:intron 35.0%
TTATTGGGTGTAACAGCTTA+GGG - chr1_4:6268608-6268627 None:intergenic 35.0%
TTTATTGGGTGTAACAGCTT+AGG - chr1_4:6268609-6268628 None:intergenic 35.0%
ACATCTGCAGTCAAATTAAG+GGG - chr1_4:6269068-6269087 None:intergenic 35.0%
AGAACATTGCATGTGTAATC+TGG + chr1_4:6269138-6269157 Msa0146570:intron 35.0%
AGTGATAGAGTTTACGGTTT+AGG + chr1_4:6269168-6269187 Msa0146570:intron 35.0%
CGAGTACTTTAGATAGGAAA+TGG - chr1_4:6269320-6269339 None:intergenic 35.0%
! TTTCCTATCTAAAGTACTCG+AGG + chr1_4:6269320-6269339 Msa0146570:intron 35.0%
! TTCCTATCTAAAGTACTCGA+GGG + chr1_4:6269321-6269340 Msa0146570:intron 35.0%
AAGAATGGAGAGTTAGAAGA+AGG + chr1_4:6269451-6269470 Msa0146570:intron 35.0%
AGCTAACAGATGAGTTTGTA+TGG + chr1_4:6269796-6269815 Msa0146570:intron 35.0%
! ACATTTGCTAGGATGATGAT+TGG + chr1_4:6269845-6269864 Msa0146570:CDS 35.0%
AATGTTACGTAGGTGATACA+AGG - chr1_4:6269872-6269891 None:intergenic 35.0%
!! CTTGATGAGAAATGGGTTAT+TGG - chr1_4:6269900-6269919 None:intergenic 35.0%
CAATAACCCATTTCTCATCA+AGG + chr1_4:6269898-6269917 Msa0146570:CDS 35.0%
!! CATTTCACAAGCTTTGAGTT+TGG + chr1_4:6270448-6270467 Msa0146570:three_prime_UTR 35.0%
! CTAATTGACTCTATTCCACT+TGG - chr1_4:6270516-6270535 None:intergenic 35.0%
TGCTATGGTTGCATCTAAGA+GGG - chr1_4:6267168-6267187 None:intergenic 40.0%
ATGCTATGGTTGCATCTAAG+AGG - chr1_4:6267169-6267188 None:intergenic 40.0%
GAAATGTCCAATTTGTCCAG+TGG + chr1_4:6267565-6267584 Msa0146570:CDS 40.0%
! TTTGAAGCCACTGGACAAAT+TGG - chr1_4:6267575-6267594 None:intergenic 40.0%
CCACAATGCTTACTAAATGG+TGG - chr1_4:6267833-6267852 None:intergenic 40.0%
! CCACCATTTAGTAAGCATTG+TGG + chr1_4:6267830-6267849 Msa0146570:CDS 40.0%
GTCCCACAATGCTTACTAAA+TGG - chr1_4:6267836-6267855 None:intergenic 40.0%
! AGCTGGCTTATGCTATCAAA+AGG + chr1_4:6267860-6267879 Msa0146570:CDS 40.0%
GTGTTGTGAATTGGAGGAAA+AGG + chr1_4:6268092-6268111 Msa0146570:intron 40.0%
! ACTCAATGTGGGTGATCTTT+TGG + chr1_4:6268214-6268233 Msa0146570:intron 40.0%
TTGAGTTTGACACCACGTTT+GGG - chr1_4:6268253-6268272 None:intergenic 40.0%
ATTGAGTTTGACACCACGTT+TGG - chr1_4:6268254-6268273 None:intergenic 40.0%
! AAACGTGGTGTCAAACTCAA+TGG + chr1_4:6268253-6268272 Msa0146570:intron 40.0%
AGAATTTCGACACAAGGAGT+CGG - chr1_4:6268291-6268310 None:intergenic 40.0%
TCGGAAAGAATTTCGACACA+AGG - chr1_4:6268297-6268316 None:intergenic 40.0%
ACATACACTTGCATTGCCAT+TGG - chr1_4:6268356-6268375 None:intergenic 40.0%
AATGGCAATGCAAGTGTATG+TGG + chr1_4:6268355-6268374 Msa0146570:intron 40.0%
ATGAAAAAGCTTCCACTCGA+GGG + chr1_4:6268378-6268397 Msa0146570:intron 40.0%
CGTAAGATCATCCATTCATC+CGG - chr1_4:6268414-6268433 None:intergenic 40.0%
TTGTGTCAAGTGTGATTGGA+TGG + chr1_4:6268450-6268469 Msa0146570:intron 40.0%
AAGCCCATTCTTGCATTTGA+GGG + chr1_4:6269010-6269029 Msa0146570:CDS 40.0%
TCTAAAGGAGCTTGGTTACA+AGG + chr1_4:6269037-6269056 Msa0146570:CDS 40.0%
CTTGCTCAACAAAAATAGCC+TGG - chr1_4:6269205-6269224 None:intergenic 40.0%
AACCCTCGAGTACTTTAGAT+AGG - chr1_4:6269326-6269345 None:intergenic 40.0%
CCTGTAATAGTCGAAGGAAT+TGG - chr1_4:6270029-6270048 None:intergenic 40.0%
CCAATTCCTTCGACTATTAC+AGG + chr1_4:6270026-6270045 Msa0146570:intron 40.0%
CTTCGACTATTACAGGCTAT+GGG + chr1_4:6270033-6270052 Msa0146570:intron 40.0%
ACTATTACAGGCTATGGGAT+TGG + chr1_4:6270038-6270057 Msa0146570:intron 40.0%
CTATTACAGGCTATGGGATT+GGG + chr1_4:6270039-6270058 Msa0146570:intron 40.0%
TTCATCAAGATTCCACCAAG+TGG + chr1_4:6270498-6270517 Msa0146570:three_prime_UTR 40.0%
! ATTGACTCTATTCCACTTGG+TGG - chr1_4:6270513-6270532 None:intergenic 40.0%
GCTATGGTTGCATCTAAGAG+GGG - chr1_4:6267167-6267186 None:intergenic 45.0%
TTCCGACAATAGTGGTCAAG+CGG + chr1_4:6268311-6268330 Msa0146570:intron 45.0%
GATGAAAAAGCTTCCACTCG+AGG + chr1_4:6268377-6268396 Msa0146570:intron 45.0%
TGAAAAAGCTTCCACTCGAG+GGG + chr1_4:6268379-6268398 Msa0146570:intron 45.0%
TCCAGTTTAGATGATCCCTC+AGG + chr1_4:6268580-6268599 Msa0146570:intron 45.0%
CAAGCCCATTCTTGCATTTG+AGG + chr1_4:6269009-6269028 Msa0146570:CDS 45.0%
GCTCCCTCAAATGCAAGAAT+GGG - chr1_4:6269016-6269035 None:intergenic 45.0%
AGCTCCCTCAAATGCAAGAA+TGG - chr1_4:6269017-6269036 None:intergenic 45.0%
GCATTTGAGGGAGCTTCTAA+AGG + chr1_4:6269022-6269041 Msa0146570:CDS 45.0%
CCATAGCCTGTAATAGTCGA+AGG - chr1_4:6270035-6270054 None:intergenic 45.0%
CCTTCGACTATTACAGGCTA+TGG + chr1_4:6270032-6270051 Msa0146570:intron 45.0%
TGCAGCTGGTAAGTACATTC+TGG + chr1_4:6270064-6270083 Msa0146570:CDS 45.0%
!!! GGTGTGCTTGATGCCATTTT+TGG - chr1_4:6270145-6270164 None:intergenic 45.0%
ACACCACCAACATCAAAAGC+AGG + chr1_4:6270160-6270179 Msa0146570:CDS 45.0%
!! TGTCCTGCTTTTGATGTTGG+TGG - chr1_4:6270166-6270185 None:intergenic 45.0%
!! AGCTGTCCTGCTTTTGATGT+TGG - chr1_4:6270169-6270188 None:intergenic 45.0%
!!! TATTTTAAAAATATTCTTTA+TGG + chr1_4:6268860-6268879 Msa0146570:intron 5.0%
!! AATAACTTAATTATAATATA+AGG + chr1_4:6269619-6269638 Msa0146570:intron 5.0%
!! ATAACTTAATTATAATATAA+GGG + chr1_4:6269620-6269639 Msa0146570:intron 5.0%
AGCATTGTGGGACTGATAGC+TGG + chr1_4:6267843-6267862 Msa0146570:CDS 50.0%
CACCACGTTTGGGTAGTGAA+GGG - chr1_4:6268243-6268262 None:intergenic 50.0%
ACACCACGTTTGGGTAGTGA+AGG - chr1_4:6268244-6268263 None:intergenic 50.0%
TTGCCATTGGACGCGTTCAA+TGG - chr1_4:6268343-6268362 None:intergenic 50.0%
GAAAAAGCTTCCACTCGAGG+GGG + chr1_4:6268380-6268399 Msa0146570:intron 50.0%
AAAAAGCTTCCACTCGAGGG+GGG + chr1_4:6268381-6268400 Msa0146570:intron 50.0%
GCCTGAGGGATCATCTAAAC+TGG - chr1_4:6268584-6268603 None:intergenic 50.0%
TAACAGCTTAGGGAGCCTGA+GGG - chr1_4:6268598-6268617 None:intergenic 50.0%
TGATCAGTGTGGCTCAGAGA+TGG + chr1_4:6268959-6268978 Msa0146570:intron 50.0%
!! AGAGATGGTGGGAGCAGTAT+GGG + chr1_4:6268974-6268993 Msa0146570:CDS 50.0%
! AGGGAGCTTCTAAAGGAGCT+TGG + chr1_4:6269029-6269048 Msa0146570:CDS 50.0%
TATGGGATTGGGTTTGCAGC+TGG + chr1_4:6270050-6270069 Msa0146570:CDS 50.0%
CTCCCTTCACTACCCAAACG+TGG + chr1_4:6268238-6268257 Msa0146570:intron 55.0%
CGCCGCTTGACCACTATTGT+CGG - chr1_4:6268316-6268335 None:intergenic 55.0%
GCTCCATTGAACGCGTCCAA+TGG + chr1_4:6268337-6268356 Msa0146570:intron 55.0%
GTAACAGCTTAGGGAGCCTG+AGG - chr1_4:6268599-6268618 None:intergenic 55.0%
TCAGTGTGGCTCAGAGATGG+TGG + chr1_4:6268962-6268981 Msa0146570:intron 55.0%
CAGTGTGGCTCAGAGATGGT+GGG + chr1_4:6268963-6268982 Msa0146570:intron 55.0%
!! CAGAGATGGTGGGAGCAGTA+TGG + chr1_4:6268973-6268992 Msa0146570:CDS 55.0%
GGGGTGCATAGCCGGATGAA+TGG + chr1_4:6268400-6268419 Msa0146570:intron 60.0%
! ACTCGAGGGGGGTGCATAGC+CGG + chr1_4:6268392-6268411 Msa0146570:intron 65.0%
GGCTATGCACCCCCCTCGAG+TGG - chr1_4:6268393-6268412 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6267035 6270638 6267035 ID=Msa0146570;Name=Msa0146570
chr1_4 mRNA 6267035 6270638 6267035 ID=Msa0146570-mRNA-1;Parent=Msa0146570;Name=Msa0146570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=232|1|1|1|0.8|0.66|6|444|240
chr1_4 exon 6267035 6267247 6267035 ID=Msa0146570-mRNA-1:exon:2706;Parent=Msa0146570-mRNA-1
chr1_4 exon 6267373 6267610 6267373 ID=Msa0146570-mRNA-1:exon:2707;Parent=Msa0146570-mRNA-1
chr1_4 exon 6267741 6267881 6267741 ID=Msa0146570-mRNA-1:exon:2708;Parent=Msa0146570-mRNA-1
chr1_4 exon 6268966 6269085 6268966 ID=Msa0146570-mRNA-1:exon:2709;Parent=Msa0146570-mRNA-1
chr1_4 exon 6269824 6269919 6269824 ID=Msa0146570-mRNA-1:exon:2710;Parent=Msa0146570-mRNA-1
chr1_4 exon 6270048 6270638 6270048 ID=Msa0146570-mRNA-1:exon:2711;Parent=Msa0146570-mRNA-1
chr1_4 five_prime_UTR 6267035 6267247 6267035 ID=Msa0146570-mRNA-1:five_prime_utr;Parent=Msa0146570-mRNA-1
chr1_4 five_prime_UTR 6267373 6267391 6267373 ID=Msa0146570-mRNA-1:five_prime_utr;Parent=Msa0146570-mRNA-1
chr1_4 CDS 6267392 6267610 6267392 ID=Msa0146570-mRNA-1:cds;Parent=Msa0146570-mRNA-1
chr1_4 CDS 6267741 6267881 6267741 ID=Msa0146570-mRNA-1:cds;Parent=Msa0146570-mRNA-1
chr1_4 CDS 6268966 6269085 6268966 ID=Msa0146570-mRNA-1:cds;Parent=Msa0146570-mRNA-1
chr1_4 CDS 6269824 6269919 6269824 ID=Msa0146570-mRNA-1:cds;Parent=Msa0146570-mRNA-1
chr1_4 CDS 6270048 6270194 6270048 ID=Msa0146570-mRNA-1:cds;Parent=Msa0146570-mRNA-1
chr1_4 three_prime_UTR 6270195 6270638 6270195 ID=Msa0146570-mRNA-1:three_prime_utr;Parent=Msa0146570-mRNA-1
Gene Sequence

>Msa0146570

ATGGAAGAATATATTCAAAAGACAATTGTGGTTGGAGTTTTTTCATGGACAACAACTTTTCTTGTAATGAGGAAAATCTTTCCAAAATGTTCATTTGATTTCTCCAACAGGATTGTCTCTACAATTCATGCAATTTTAGCAGTAACATTGGCTACTTTATCTGTTCAAGATTGGAAATGTCCAATTTGTCCAGTGGCTTCAAATTCTTCTTACAGACAGATGGAAGTTCTGGCAGTGAGCCTGTCATATCTAATTTATGATCTAGTGTGTTGTTTATTTGATGAAAAATTCAATTGGGACAACACTATCCACCATTTAGTAAGCATTGTGGGACTGATAGCTGGCTTATGCTATCAAAAGTGTGGCTCAGAGATGGTGGGAGCAGTATGGGTAACAGAGATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTAAAGGAGCTTGGTTACAAGGACACTCCCCTTAATTTGACTGCAGATATTTTATTTGCTTCAATATTTACATTTGCTAGGATGATGATTGGACCTTGTATCACCTACGTAACATTAACTTCCAATAACCCATTTCTCATCAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTACATTCTGGTTCTTCAAAATTGTAAGAATGATGAGATACAAACTAACCAAGAAATCATCATCATCCAAAAATGGCATCAAGCACACCACCAACATCAAAAGCAGGACAGCTAGCTAG

Protein sequence

>Msa0146570

MEEYIQKTIVVGVFSWTTTFLVMRKIFPKCSFDFSNRIVSTIHAILAVTLATLSVQDWKCPICPVASNSSYRQMEVLAVSLSYLIYDLVCCLFDEKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTSNNPFLIKAMGLGLQLVSTFWFFKIVRMMRYKLTKKSSSSKNGIKHTTNIKSRTAS*