AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643540 MtrunA17_Chr4g0030361 73.067 375 3 3 1 277 266 640 0.0 529
Msa0643540 MtrunA17_Chr2g0327561 59.948 382 40 4 2 274 586 963 5.46e-146 433
Msa0643540 MtrunA17_Chr8g0369091 61.775 293 58 2 1 239 556 848 5.69e-124 375
Msa0643540 MtrunA17_Chr2g0309421 53.846 182 83 1 17 198 151 331 9.86e-63 207
Msa0643540 MtrunA17_Chr2g0290691 53.297 182 85 0 17 198 179 360 1.93e-62 206
Msa0643540 MtrunA17_Chr8g0335351 52.604 192 90 1 7 198 336 526 8.60e-62 207
Msa0643540 MtrunA17_Chr7g0227331 53.846 182 84 0 17 198 207 388 2.27e-61 204
Msa0643540 MtrunA17_Chr7g0250631 51.269 197 95 1 7 203 330 525 4.11e-61 206
Msa0643540 MtrunA17_Chr8g0356291 50.820 183 89 1 17 198 101 283 1.22e-58 195
Msa0643540 MtrunA17_Chr3g0080101 51.429 175 85 0 17 191 390 564 2.30e-57 196
Msa0643540 MtrunA17_Chr7g0266031 50.000 182 91 0 17 198 467 648 1.42e-55 192
Msa0643540 MtrunA17_Chr1g0179101 50.857 175 86 0 17 191 445 619 6.49e-55 190
Msa0643540 MtrunA17_Chr6g0449401 44.749 219 84 1 17 198 238 456 2.37e-54 186
Msa0643540 MtrunA17_Chr4g0063311 43.541 209 113 2 15 218 64 272 3.73e-54 182
Msa0643540 MtrunA17_Chr2g0321101 50.267 187 86 3 23 202 68 254 4.51e-51 174
Msa0643540 MtrunA17_Chr2g0312641 50.273 183 87 3 11 190 61 242 7.16e-51 173
Msa0643540 MtrunA17_Chr8g0381091 43.750 192 94 3 17 198 52 239 1.46e-46 161
Msa0643540 MtrunA17_Chr2g0285711 44.271 192 92 3 17 198 57 243 2.01e-46 161
Msa0643540 MtrunA17_Chr7g0245031 37.611 226 113 4 38 237 142 365 2.30e-40 145
Msa0643540 MtrunA17_Chr4g0059751 37.339 233 111 5 38 237 83 313 1.76e-39 142
Msa0643540 MtrunA17_Chr7g0234641 40.854 164 90 2 35 191 4 167 1.05e-37 137
Msa0643540 MtrunA17_Chr8g0338741 41.860 172 88 3 37 198 13 182 5.89e-37 135
Msa0643540 MtrunA17_Chr2g0329011 42.353 170 95 2 35 203 8 175 6.64e-37 134
Msa0643540 MtrunA17_Chr4g0018201 32.000 275 125 5 35 252 750 1019 2.78e-36 137
Msa0643540 MtrunA17_Chr5g0428981 31.636 275 126 5 35 252 754 1023 3.81e-36 136
Msa0643540 MtrunA17_Chr4g0032761 42.236 161 86 2 38 191 9 169 6.50e-35 130
Msa0643540 MtrunA17_Chr1g0197721 31.641 256 130 5 19 237 32 279 7.88e-32 122
Msa0643540 MtrunA17_Chr1g0167311 39.752 161 90 2 38 198 109 262 1.77e-31 122
Msa0643540 MtrunA17_Chr1g0167351 39.752 161 90 2 38 198 104 257 1.94e-31 122
Msa0643540 MtrunA17_Chr6g0478601 36.994 173 107 1 32 204 99 269 6.48e-31 120
Msa0643540 MtrunA17_Chr1g0183651 38.554 166 95 2 38 203 114 272 4.80e-30 118
Msa0643540 MtrunA17_Chr7g0261491 35.610 205 115 5 38 242 114 301 5.81e-30 118
Msa0643540 MtrunA17_Chr3g0140631 30.488 246 145 3 16 237 9 252 4.64e-29 112
Msa0643540 MtrunA17_Chr1g0187581 35.404 161 97 2 38 198 111 264 4.52e-28 112
Msa0643540 MtrunA17_Chr1g0153321 36.601 153 95 1 38 190 102 252 1.33e-27 111
Msa0643540 MtrunA17_Chr3g0135951 36.628 172 102 2 38 209 88 252 6.30e-27 109
Msa0643540 MtrunA17_Chr3g0107011 29.358 218 121 2 50 237 20 234 2.51e-26 107
Msa0643540 MtrunA17_Chr2g0299781 35.976 164 98 2 38 201 107 263 9.70e-26 105
Msa0643540 MtrunA17_Chr4g0013131 27.660 235 137 3 33 237 1 232 2.07e-25 104
Msa0643540 MtrunA17_Chr2g0302431 28.326 233 135 3 36 238 12 242 6.41e-25 103
Msa0643540 MtrunA17_Chr7g0244521 27.966 236 137 3 33 238 1 233 1.18e-24 102
Msa0643540 MtrunA17_Chr2g0284011 27.542 236 138 3 33 238 1 233 3.02e-24 101
Msa0643540 MtrunA17_Chr5g0432471 26.531 245 141 5 33 242 1 241 7.43e-24 100
Msa0643540 MtrunA17_Chr8g0351491 30.275 218 126 2 44 237 16 231 1.42e-23 97.1
Msa0643540 MtrunA17_Chr4g0001331 26.697 221 129 3 48 238 24 241 8.02e-23 97.4
Msa0643540 MtrunA17_Chr2g0284031 27.632 228 132 3 41 238 28 252 2.04e-22 96.3
Msa0643540 MtrunA17_Chr1g0166101 28.968 252 146 5 38 258 18 267 7.95e-22 94.0
Msa0643540 MtrunA17_Chr8g0379091 29.384 211 116 3 41 221 23 230 2.14e-21 93.6
Msa0643540 MtrunA17_Chr8g0353621 29.204 226 134 2 38 239 4 227 2.95e-21 90.5
Msa0643540 MtrunA17_Chr2g0286501 39.437 142 78 4 50 191 55 188 2.99e-21 93.6
Msa0643540 MtrunA17_Chr2g0304111 25.909 220 131 3 48 237 27 244 3.27e-21 92.8
Msa0643540 MtrunA17_Chr8g0346071 26.147 218 131 3 48 237 21 236 6.88e-21 91.7
Msa0643540 MtrunA17_Chr3g0107051 26.639 244 141 5 48 258 25 263 1.96e-20 90.5
Msa0643540 MtrunA17_Chr8g0346081 26.147 218 131 3 48 237 21 236 3.41e-20 89.7
Msa0643540 MtrunA17_Chr5g0428031 25.229 218 133 4 48 237 13 228 7.80e-20 88.6
Msa0643540 MtrunA17_Chr1g0150321 25.909 220 130 3 48 237 17 233 1.15e-19 88.2
Msa0643540 MtrunA17_Chr1g0188031 28.384 229 130 5 41 237 17 243 1.78e-19 87.4
Msa0643540 MtrunA17_Chr4g0069301 26.778 239 143 3 30 238 12 248 2.08e-19 87.4
Msa0643540 MtrunA17_Chr6g0468751 28.704 216 125 4 41 229 16 229 3.87e-19 87.0
Msa0643540 MtrunA17_Chr3g0114511 29.412 204 109 3 48 221 36 234 4.12e-19 86.7
Msa0643540 MtrunA17_Chr6g0453681 29.032 217 123 5 41 229 16 229 5.82e-19 86.3
Msa0643540 MtrunA17_Chr4g0074111 25.490 204 119 3 48 221 22 222 5.93e-19 85.9
Msa0643540 MtrunA17_Chr1g0205421 24.255 235 145 2 33 237 1 232 6.00e-19 86.3
Msa0643540 MtrunA17_Chr4g0063881 27.778 198 113 3 48 217 15 210 7.57e-19 85.9
Msa0643540 MtrunA17_Chr1g0203881 29.060 234 120 6 36 238 44 262 8.18e-19 85.9
Msa0643540 MtrunA17_Chr3g0125381 31.214 173 90 2 94 239 2 172 1.25e-18 82.0
Msa0643540 MtrunA17_Chr2g0333821 23.982 221 135 3 48 238 18 235 1.55e-18 84.7
Msa0643540 MtrunA17_Chr5g0441011 24.091 220 135 3 48 237 17 234 2.83e-18 84.0
Msa0643540 MtrunA17_Chr5g0432491 26.639 244 142 5 48 258 27 266 3.64e-18 84.0
Msa0643540 MtrunA17_Chr5g0426521 28.016 257 137 9 41 258 1 248 4.24e-17 80.1
Msa0643540 MtrunA17_Chr4g0059121 30.000 190 101 4 91 254 106 289 4.03e-16 77.4
Msa0643540 MtrunA17_Chr1g0170551 28.761 226 130 5 41 239 4 225 4.29e-16 78.2
Msa0643540 MtrunA17_Chr1g0200601 27.391 230 122 7 43 236 29 249 4.71e-16 77.8
Msa0643540 MtrunA17_Chr8g0387671 27.727 220 124 6 48 236 70 285 1.09e-15 76.6
Msa0643540 MtrunA17_Chr1g0162301 26.471 238 130 8 44 245 24 252 1.33e-15 75.9
Msa0643540 MtrunA17_Chr4g0047191 26.630 184 109 3 91 248 94 277 1.50e-15 75.9
Msa0643540 MtrunA17_Chr4g0047211 26.630 184 109 3 91 248 89 272 2.01e-15 75.1
Msa0643540 MtrunA17_Chr3g0132671 26.378 254 128 7 41 237 16 267 2.12e-15 75.9
Msa0643540 MtrunA17_Chr2g0299991 31.609 174 114 3 37 209 63 232 2.23e-15 75.1
Msa0643540 MtrunA17_Chr2g0277501 26.724 232 127 7 41 237 1 224 2.28e-15 75.1
Msa0643540 MtrunA17_Chr3g0091311 28.272 191 128 3 33 220 1 185 3.80e-15 73.6
Msa0643540 MtrunA17_Chr4g0055451 25.862 232 127 8 42 237 3 225 3.80e-15 74.3
Msa0643540 MtrunA17_Chr2g0326531 25.417 240 140 5 34 237 110 346 5.82e-15 74.3
Msa0643540 MtrunA17_Chr8g0385281 26.697 221 121 7 44 232 5 216 9.16e-15 73.6
Msa0643540 MtrunA17_Chr8g0374571 25.214 234 132 7 47 245 26 251 9.21e-15 73.6
Msa0643540 MtrunA17_Chr5g0402661 25.214 234 132 7 47 245 21 246 1.09e-14 73.2
Msa0643540 MtrunA17_Chr3g0131061 26.638 229 125 7 44 237 4 224 1.12e-14 73.2
Msa0643540 MtrunA17_Chr5g0399911 27.948 229 125 7 42 232 4 230 1.42e-14 72.8
Msa0643540 MtrunA17_Chr4g0045371 25.316 237 134 7 44 245 23 251 1.91e-14 72.4
Msa0643540 MtrunA17_Chr6g0453671 26.364 220 131 4 30 221 5 221 2.00e-14 72.4
Msa0643540 MtrunA17_Chr1g0176751 26.582 237 124 7 39 236 118 343 2.35e-14 72.8
Msa0643540 MtrunA17_Chr1g0157131 26.457 223 119 6 48 234 78 291 2.75e-14 72.4
Msa0643540 MtrunA17_Chr8g0381821 25.751 233 128 8 41 237 1 224 3.29e-14 71.6
Msa0643540 MtrunA17_Chr4g0072831 25.837 209 117 5 33 232 1 180 3.68e-14 71.2
Msa0643540 MtrunA17_Chr3g0123791 25.664 226 127 7 42 235 3 219 3.76e-14 71.6
Msa0643540 MtrunA17_Chr3g0117731 27.374 179 104 2 91 243 105 283 5.01e-14 71.2
Msa0643540 MtrunA17_Chr4g0029241 25.610 246 136 7 34 239 108 346 6.86e-14 71.2
Msa0643540 MtrunA17_Chr7g0274941 24.444 225 139 5 42 237 14 236 8.52e-14 70.1
Msa0643540 MtrunA17_Chr5g0441691 27.854 219 125 6 48 236 72 287 1.09e-13 70.9
Msa0643540 MtrunA17_Chr4g0075541 30.323 155 82 3 91 219 135 289 1.36e-13 70.1
Msa0643540 MtrunA17_Chr1g0173921 24.590 183 128 4 41 214 1 182 1.72e-13 70.5
Msa0643540 MtrunA17_Chr4g0047201 32.353 102 69 0 91 192 250 351 1.97e-13 70.1
Msa0643540 MtrunA17_Chr4g0008561 26.738 187 105 5 81 237 55 239 2.42e-13 70.1
Msa0643540 MtrunA17_Chr8g0385341 24.800 250 134 7 48 254 34 272 2.49e-13 69.7
Msa0643540 MtrunA17_Chr0c02g0489761 27.854 219 125 6 48 236 82 297 2.80e-13 69.7
Msa0643540 MtrunA17_Chr3g0091281 27.313 227 125 6 48 241 16 235 4.34e-13 67.4
Msa0643540 MtrunA17_Chr7g0244561 26.471 238 139 6 50 254 22 256 8.58e-13 67.8
Msa0643540 MtrunA17_Chr4g0000431 28.662 157 107 3 39 193 19 172 1.25e-12 67.8
Msa0643540 MtrunA17_Chr2g0317001 27.632 152 102 3 43 192 14 159 1.41e-12 67.8
Msa0643540 MtrunA17_Chr8g0386981 28.750 160 96 4 50 204 414 560 1.57e-12 67.4
Msa0643540 MtrunA17_Chr1g0190831 25.824 182 125 4 41 213 1 181 2.01e-12 67.0
Msa0643540 MtrunA17_Chr2g0282321 26.230 183 109 3 92 248 212 394 2.80e-12 66.6
Msa0643540 MtrunA17_Chr7g0258051 25.000 152 112 2 41 191 13 163 2.99e-12 66.6
Msa0643540 MtrunA17_Chr2g0321841 24.342 152 113 2 41 191 1 151 4.09e-12 66.2
Msa0643540 MtrunA17_Chr4g0070851 29.586 169 111 4 59 226 85 246 4.40e-12 65.5
Msa0643540 MtrunA17_Chr8g0376061 30.058 173 114 3 24 193 316 484 5.60e-12 65.9
Msa0643540 MtrunA17_Chr4g0038501 34.000 100 66 0 92 191 67 166 6.88e-12 65.9
Msa0643540 MtrunA17_Chr3g0091291 36.697 109 56 3 91 193 5 106 1.04e-11 63.2
Msa0643540 MtrunA17_Chr4g0038091 32.673 101 68 0 92 192 67 167 1.12e-11 65.1
Msa0643540 MtrunA17_Chr3g0131181 24.400 250 135 7 48 254 33 271 1.15e-11 64.7
Msa0643540 MtrunA17_Chr2g0284901 28.821 229 113 10 56 250 164 376 1.15e-11 64.7
Msa0643540 MtrunA17_Chr1g0176421 24.887 221 129 6 48 236 165 380 1.19e-11 64.7
Msa0643540 MtrunA17_Chr4g0025671 23.684 152 114 2 41 191 5 155 1.23e-11 65.1
Msa0643540 MtrunA17_Chr7g0256001 23.790 248 151 6 33 251 141 379 1.41e-11 64.7
Msa0643540 MtrunA17_Chr3g0143531 30.345 145 95 5 48 191 29 168 1.85e-11 63.2
Msa0643540 MtrunA17_Chr5g0427651 26.207 145 101 3 50 191 652 793 2.46e-11 63.9
Msa0643540 MtrunA17_Chr1g0188991 26.797 153 106 2 42 192 13 161 2.59e-11 63.9
Msa0643540 MtrunA17_Chr6g0450571 25.000 164 121 1 29 192 1 162 2.82e-11 63.5
Msa0643540 MtrunA17_Chr6g0483931 31.953 169 108 4 28 193 353 517 4.73e-11 63.2
Msa0643540 MtrunA17_Chr6g0454661 26.506 166 115 2 43 205 831 992 5.90e-11 62.8
Msa0643540 MtrunA17_Chr2g0330211 25.658 152 106 3 44 192 18 165 6.11e-11 62.4
Msa0643540 MtrunA17_Chr7g0260191 25.275 182 126 4 41 213 1 181 6.16e-11 62.8
Msa0643540 MtrunA17_Chr1g0202101 28.402 169 116 4 24 191 262 426 7.68e-11 62.4
Msa0643540 MtrunA17_Chr5g0419441 25.503 149 108 2 44 192 239 384 8.26e-11 62.4
Msa0643540 MtrunA17_Chr3g0091421 26.201 229 125 6 48 241 16 235 8.77e-11 60.8
Msa0643540 MtrunA17_Chr6g0450871 31.852 135 74 5 92 208 124 258 9.72e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643540 AT3G45780.2 67.797 295 39 2 1 239 620 914 1.10e-134 405
Msa0643540 AT3G45780.1 67.797 295 39 2 1 239 620 914 1.10e-134 405
Msa0643540 AT5G58140.3 60.274 292 62 2 2 239 535 826 5.17e-121 367
Msa0643540 AT5G58140.6 60.274 292 62 2 2 239 535 826 9.37e-121 367
Msa0643540 AT5G58140.7 60.274 292 62 2 2 239 535 826 9.37e-121 367
Msa0643540 AT5G58140.5 60.274 292 62 2 2 239 535 826 9.37e-121 367
Msa0643540 AT5G58140.2 60.274 292 62 2 2 239 535 826 9.37e-121 367
Msa0643540 AT5G58140.1 60.274 292 62 2 2 239 535 826 9.37e-121 367
Msa0643540 AT5G58140.4 71.429 147 42 0 2 148 535 681 2.66e-74 240
Msa0643540 AT4G26610.1 52.332 193 92 0 17 209 96 288 1.03e-64 211
Msa0643540 AT2G44830.2 52.500 200 94 1 4 203 324 522 4.41e-64 214
Msa0643540 AT2G44830.3 52.500 200 94 1 4 203 324 522 4.41e-64 214
Msa0643540 AT2G44830.1 52.500 200 94 1 4 203 324 522 4.41e-64 214
Msa0643540 AT1G79250.1 54.396 182 83 0 17 198 119 300 8.89e-64 209
Msa0643540 AT1G79250.3 54.396 182 83 0 17 198 119 300 8.89e-64 209
Msa0643540 AT1G79250.2 54.396 182 83 0 17 198 119 300 8.89e-64 209
Msa0643540 AT1G79250.4 54.396 182 83 0 17 198 119 300 8.89e-64 209
Msa0643540 AT5G55910.2 56.000 175 77 0 17 191 82 256 9.97e-64 208
Msa0643540 AT5G55910.1 56.000 175 77 0 17 191 82 256 9.97e-64 208
Msa0643540 AT1G16440.1 52.717 184 85 1 17 198 86 269 1.44e-62 205
Msa0643540 AT3G12690.1 52.432 185 88 0 17 201 158 342 2.11e-62 206
Msa0643540 AT3G12690.3 52.432 185 88 0 17 201 158 342 2.11e-62 206
Msa0643540 AT3G12690.2 52.432 185 88 0 17 201 158 342 2.11e-62 206
Msa0643540 AT5G47750.1 55.249 181 79 1 17 195 164 344 3.43e-62 206
Msa0643540 AT5G40030.1 50.769 195 94 2 9 201 77 271 8.11e-61 200
Msa0643540 AT3G27580.2 53.261 184 84 2 17 198 153 336 2.62e-58 196
Msa0643540 AT3G27580.1 53.261 184 84 2 17 198 153 336 2.62e-58 196
Msa0643540 AT3G52890.2 51.648 182 88 0 17 198 511 692 1.41e-56 195
Msa0643540 AT3G52890.4 51.648 182 88 0 17 198 511 692 1.41e-56 195
Msa0643540 AT3G52890.1 51.648 182 88 0 17 198 511 692 1.41e-56 195
Msa0643540 AT3G52890.3 51.648 182 88 0 17 198 511 692 1.41e-56 195
Msa0643540 AT5G03640.2 51.087 184 88 2 17 198 512 695 2.87e-56 194
Msa0643540 AT5G03640.1 51.087 184 88 2 17 198 512 695 2.87e-56 194
Msa0643540 AT2G36350.1 49.451 182 92 0 17 198 532 713 9.09e-56 193
Msa0643540 AT2G26700.1 47.849 186 94 2 17 199 59 244 1.12e-54 185
Msa0643540 AT2G34650.1 46.667 180 89 2 17 191 50 227 2.31e-51 174
Msa0643540 AT3G14370.1 49.162 179 88 2 19 195 61 238 1.90e-50 172
Msa0643540 AT1G53700.1 47.727 176 87 3 19 190 66 240 4.26e-47 164
Msa0643540 AT3G44610.1 50.303 165 70 3 50 202 75 239 7.72e-45 157
Msa0643540 AT3G08720.1 36.283 226 115 4 39 238 135 357 8.85e-37 136
Msa0643540 AT3G08720.3 36.283 226 115 4 39 238 135 357 8.85e-37 136
Msa0643540 AT3G08720.4 36.283 226 115 4 39 238 135 357 8.85e-37 136
Msa0643540 AT3G08720.2 36.283 226 115 4 39 238 135 357 8.85e-37 136
Msa0643540 AT3G08730.1 36.283 226 115 4 39 238 129 351 1.16e-36 135
Msa0643540 AT3G08730.2 36.283 226 115 4 39 238 129 351 1.16e-36 135
Msa0643540 AT3G20830.1 45.342 161 82 2 37 191 14 174 1.66e-34 129
Msa0643540 AT1G51170.1 44.512 164 79 3 38 192 16 176 2.01e-33 126
Msa0643540 AT5G04510.3 31.405 242 116 5 33 237 44 272 1.59e-32 121
Msa0643540 AT5G04510.2 32.083 240 123 5 66 267 66 303 4.84e-32 122
Msa0643540 AT3G17850.1 41.290 155 89 1 37 191 875 1027 7.38e-32 124
Msa0643540 AT1G30640.3 38.065 155 94 1 37 191 20 172 1.08e-31 122
Msa0643540 AT5G62310.1 39.286 168 100 1 37 204 747 912 1.11e-31 124
Msa0643540 AT5G04510.1 33.040 227 113 4 48 237 48 272 1.18e-31 122
Msa0643540 AT1G30640.2 38.065 155 94 1 37 191 113 265 1.28e-31 123
Msa0643540 AT1G30640.1 38.065 155 94 1 37 191 113 265 1.28e-31 123
Msa0643540 AT1G48490.3 31.225 253 120 4 37 237 821 1071 1.54e-31 124
Msa0643540 AT1G48490.2 31.225 253 120 4 37 237 821 1071 1.54e-31 124
Msa0643540 AT1G48490.1 31.225 253 120 4 37 237 821 1071 1.54e-31 124
Msa0643540 AT4G13000.1 38.854 157 91 2 39 192 15 169 1.59e-31 120
Msa0643540 AT1G48490.4 31.225 253 120 4 37 237 822 1072 1.68e-31 124
Msa0643540 AT3G23310.1 39.752 161 90 2 38 198 114 267 3.56e-31 122
Msa0643540 AT4G14350.2 39.130 161 91 2 38 198 113 266 7.02e-31 120
Msa0643540 AT4G14350.1 39.130 161 91 2 38 198 113 266 7.02e-31 120
Msa0643540 AT4G14350.4 39.130 161 91 2 38 198 113 266 7.02e-31 120
Msa0643540 AT4G14350.3 39.130 161 91 2 38 198 113 266 8.82e-31 120
Msa0643540 AT2G20470.3 39.130 161 91 2 38 198 118 271 8.84e-31 120
Msa0643540 AT5G09890.1 37.209 172 101 2 38 209 96 260 1.22e-30 120
Msa0643540 AT5G09890.2 37.209 172 101 2 38 209 96 260 1.23e-30 120
Msa0643540 AT2G20470.2 39.130 161 91 2 38 198 118 271 1.52e-30 120
Msa0643540 AT2G20470.1 39.130 161 91 2 38 198 118 271 1.52e-30 120
Msa0643540 AT1G45160.1 30.588 255 121 4 37 237 663 915 1.52e-30 120
Msa0643540 AT3G10540.1 30.992 242 117 5 33 237 45 273 1.67e-30 119
Msa0643540 AT1G45160.2 30.588 255 121 4 37 237 663 915 1.75e-30 120
Msa0643540 AT1G03920.2 39.752 161 90 2 38 198 18 171 2.37e-30 118
Msa0643540 AT1G03920.1 39.752 161 90 2 38 198 131 284 4.33e-30 119
Msa0643540 AT1G03920.3 39.752 161 90 2 38 198 131 284 4.33e-30 119
Msa0643540 AT3G25250.1 40.397 151 81 2 50 192 23 172 2.23e-28 112
Msa0643540 AT4G33080.1 36.646 161 95 2 38 198 88 241 3.45e-27 110
Msa0643540 AT4G33080.2 36.646 161 95 2 38 198 88 241 3.55e-27 110
Msa0643540 AT2G45490.2 31.556 225 128 2 37 237 15 237 1.83e-26 104
Msa0643540 AT2G25880.1 32.710 214 118 3 48 237 29 240 2.34e-26 105
Msa0643540 AT2G45490.1 31.556 225 128 2 37 237 15 237 3.19e-26 104
Msa0643540 AT2G25880.4 32.710 214 118 3 48 237 42 253 5.66e-26 104
Msa0643540 AT5G25110.1 26.336 262 152 5 8 237 11 263 2.19e-25 105
Msa0643540 AT2G25880.3 32.710 214 118 3 48 237 90 301 2.59e-25 103
Msa0643540 AT4G32830.1 31.674 221 125 3 41 237 28 246 1.60e-24 100
Msa0643540 AT4G14580.1 29.630 243 137 6 48 258 25 265 2.79e-24 101
Msa0643540 AT5G01810.3 27.234 235 138 3 33 237 1 232 3.49e-24 100
Msa0643540 AT5G01810.1 27.234 235 138 3 33 237 1 232 5.03e-24 100
Msa0643540 AT5G01810.2 27.234 235 138 3 33 237 1 232 5.03e-24 100
Msa0643540 AT2G19400.1 36.774 155 91 2 44 198 105 252 8.54e-24 100
Msa0643540 AT5G57630.2 27.650 217 127 4 48 237 16 229 6.09e-23 97.4
Msa0643540 AT5G57630.1 27.650 217 127 4 48 237 16 229 8.89e-23 97.1
Msa0643540 AT5G18700.1 40.845 142 76 4 50 191 10 143 3.25e-22 96.7
Msa0643540 AT5G58380.1 27.064 218 126 3 50 237 18 232 3.42e-22 95.9
Msa0643540 AT4G24400.1 28.283 198 112 3 48 217 13 208 4.11e-22 95.5
Msa0643540 AT4G18700.1 25.573 262 161 4 28 258 10 268 4.12e-22 95.9
Msa0643540 AT4G24400.2 28.283 198 112 3 48 217 13 208 5.32e-22 95.1
Msa0643540 AT2G26980.1 27.273 220 128 3 48 237 18 235 8.23e-22 94.0
Msa0643540 AT2G26980.2 27.273 220 128 3 48 237 18 235 9.87e-22 92.0
Msa0643540 AT2G26980.4 27.273 220 128 3 48 237 28 245 1.11e-21 94.4
Msa0643540 AT2G26980.3 27.273 220 128 3 48 237 18 235 1.17e-21 94.4
Msa0643540 AT2G26980.5 27.273 220 128 3 48 237 18 235 2.20e-21 93.2
Msa0643540 AT5G45820.1 27.313 227 130 4 50 246 18 239 2.29e-21 93.2
Msa0643540 AT5G45810.1 26.027 219 129 3 50 238 34 249 4.42e-21 92.8
Msa0643540 AT5G10930.1 26.271 236 140 4 33 237 1 233 5.71e-21 92.4
Msa0643540 AT1G30270.2 25.909 220 131 4 48 237 35 252 1.51e-20 91.3
Msa0643540 AT1G30270.1 25.909 220 131 4 48 237 35 252 1.73e-20 91.3
Msa0643540 AT2G30360.1 28.629 248 133 8 48 258 25 265 1.96e-20 90.5
Msa0643540 AT1G29230.1 26.446 242 144 5 48 258 78 316 2.18e-20 90.9
Msa0643540 AT3G23000.1 28.390 236 135 6 38 241 19 252 2.20e-20 90.5
Msa0643540 AT2G25090.1 27.753 227 122 5 50 237 21 244 2.47e-20 90.5
Msa0643540 AT3G01090.3 29.596 223 126 5 35 229 10 229 2.82e-20 90.5
Msa0643540 AT3G01090.1 29.596 223 126 5 35 229 10 229 2.82e-20 90.5
Msa0643540 AT3G01090.2 29.279 222 128 4 35 229 33 252 2.96e-20 90.5
Msa0643540 AT4G30960.1 26.556 241 142 5 29 237 7 244 3.65e-20 90.1
Msa0643540 AT5G35410.2 27.273 198 114 3 48 217 15 210 4.58e-20 89.0
Msa0643540 AT5G07070.1 26.383 235 140 3 33 237 1 232 5.42e-20 89.7
Msa0643540 AT2G34180.1 27.869 244 138 6 48 258 61 299 6.24e-20 89.7
Msa0643540 AT5G35410.1 27.273 198 114 3 48 217 15 210 9.15e-20 89.0
Msa0643540 AT5G21326.1 26.818 220 129 4 48 237 17 234 1.00e-19 88.6
Msa0643540 AT3G17510.1 26.360 239 142 5 30 238 8 242 1.48e-19 88.2
Msa0643540 AT3G29160.3 27.477 222 132 4 35 229 11 230 6.88e-19 85.5
Msa0643540 AT3G29160.1 27.477 222 132 4 35 229 11 230 1.47e-18 85.5
Msa0643540 AT3G29160.2 27.477 222 132 4 35 229 11 230 1.47e-18 85.5
Msa0643540 AT1G01140.3 24.545 220 134 3 48 237 23 240 4.75e-18 84.0
Msa0643540 AT1G01140.1 24.545 220 134 3 48 237 23 240 5.01e-18 84.0
Msa0643540 AT1G01140.2 25.500 200 117 3 48 217 23 220 1.00e-17 82.8
Msa0643540 AT5G39440.1 28.704 216 124 5 41 229 16 228 1.10e-17 82.8
Msa0643540 AT1G48260.1 27.477 222 127 4 48 238 15 233 3.68e-17 81.3
Msa0643540 AT3G10660.2 26.255 259 142 6 16 236 158 405 8.24e-17 80.5
Msa0643540 AT3G10660.1 26.255 259 142 6 16 236 158 405 8.24e-17 80.5
Msa0643540 AT1G50240.3 29.204 226 129 6 39 237 1 222 1.08e-16 80.5
Msa0643540 AT1G50240.2 29.204 226 129 6 39 237 1 222 1.08e-16 80.5
Msa0643540 AT4G40010.1 25.778 225 128 6 41 234 1 217 1.95e-16 78.6
Msa0643540 AT5G01820.1 28.000 225 121 4 48 238 26 243 3.48e-16 78.6
Msa0643540 AT2G38490.1 28.251 223 121 6 48 237 32 248 5.72e-16 77.8
Msa0643540 AT1G49180.2 28.708 209 117 5 50 229 13 218 7.85e-16 77.0
Msa0643540 AT1G49180.1 28.922 204 113 5 55 229 18 218 1.40e-15 76.6
Msa0643540 AT1G12580.1 26.724 232 124 6 36 236 47 263 2.16e-15 76.3
Msa0643540 AT5G57565.2 35.185 108 62 3 113 219 28 128 2.99e-15 71.2
Msa0643540 AT5G57565.6 35.185 108 62 3 113 219 28 128 2.99e-15 71.2
Msa0643540 AT1G30270.3 29.677 155 77 4 113 237 3 155 3.21e-15 75.5
Msa0643540 AT3G45240.3 27.897 233 131 7 41 239 105 334 3.68e-15 75.1
Msa0643540 AT4G29810.3 26.772 254 148 7 28 251 63 308 7.76e-15 73.9
Msa0643540 AT4G29810.1 26.772 254 148 7 28 251 54 299 9.83e-15 73.9
Msa0643540 AT3G45240.2 27.542 236 131 7 41 239 105 337 9.97e-15 73.9
Msa0643540 AT3G45240.1 27.542 236 131 7 41 239 105 337 9.97e-15 73.9
Msa0643540 AT4G29810.2 26.772 254 148 7 28 251 63 308 1.10e-14 73.6
Msa0643540 AT5G12180.1 28.054 221 122 6 48 236 77 292 1.46e-14 73.9
Msa0643540 AT1G10940.1 26.180 233 127 8 41 237 1 224 1.76e-14 73.2
Msa0643540 AT5G19360.1 28.054 221 122 6 48 236 72 287 1.90e-14 73.6
Msa0643540 AT1G60940.1 26.070 257 142 9 41 258 1 248 2.18e-14 72.8
Msa0643540 AT1G60940.2 26.070 257 142 9 41 258 1 248 2.18e-14 72.8
Msa0643540 AT5G58950.1 25.294 170 101 3 92 235 258 427 2.40e-14 73.2
Msa0643540 AT5G60550.1 25.620 242 139 6 34 237 98 336 2.56e-14 72.8
Msa0643540 AT4G33950.1 24.664 223 129 6 44 235 21 235 4.69e-14 71.6
Msa0643540 AT4G33950.2 24.664 223 129 6 44 235 21 235 4.85e-14 71.6
Msa0643540 AT1G12680.1 26.457 223 113 8 48 236 111 316 4.89e-14 72.0
Msa0643540 AT1G78290.3 25.781 256 144 8 41 258 1 248 5.07e-14 71.6
Msa0643540 AT1G78290.2 25.781 256 144 8 41 258 1 248 5.07e-14 71.6
Msa0643540 AT3G20860.1 26.000 150 110 1 44 193 4 152 7.72e-14 71.2
Msa0643540 AT4G26070.5 30.573 157 102 4 37 191 48 199 1.14e-13 70.5
Msa0643540 AT4G04720.2 24.771 218 133 5 48 236 84 299 1.34e-13 70.9
Msa0643540 AT4G04720.1 24.771 218 133 5 48 236 84 299 1.34e-13 70.9
Msa0643540 AT4G26070.1 30.573 157 102 4 37 191 61 212 1.51e-13 69.7
Msa0643540 AT4G26070.4 30.573 157 102 4 37 191 60 211 1.52e-13 70.1
Msa0643540 AT1G62400.1 30.323 155 82 3 91 219 134 288 1.86e-13 70.1
Msa0643540 AT4G26070.2 30.573 157 102 4 37 191 61 212 1.92e-13 70.1
Msa0643540 AT4G26070.3 30.573 157 102 4 37 191 61 212 1.92e-13 70.1
Msa0643540 AT5G08590.1 25.769 260 147 8 44 265 4 255 2.06e-13 69.7
Msa0643540 AT3G04530.1 24.887 221 133 7 50 240 17 234 2.11e-13 69.3
Msa0643540 AT5G21222.1 23.267 202 123 4 66 237 35 234 2.12e-13 70.5
Msa0643540 AT5G21222.2 23.267 202 123 4 66 237 35 234 2.12e-13 70.5
Msa0643540 AT5G21222.4 23.267 202 123 4 66 237 35 234 2.12e-13 70.5
Msa0643540 AT5G21222.3 23.267 202 123 4 66 237 35 234 2.12e-13 70.5
Msa0643540 AT1G69270.1 28.916 166 111 3 43 205 260 421 2.86e-13 70.1
Msa0643540 AT1G70430.3 28.477 151 106 1 42 192 14 162 3.85e-13 69.7
Msa0643540 AT1G70430.4 28.477 151 106 1 42 192 14 162 4.01e-13 69.7
Msa0643540 AT5G28290.3 25.824 182 125 4 41 213 1 181 4.16e-13 69.3
Msa0643540 AT1G70430.1 28.477 151 106 1 42 192 14 162 4.18e-13 69.7
Msa0643540 AT5G63650.1 25.769 260 147 8 44 265 4 255 4.29e-13 68.9
Msa0643540 AT5G28290.1 25.824 182 125 4 41 213 1 181 5.26e-13 69.3
Msa0643540 AT5G28290.2 25.824 182 125 4 41 213 1 181 5.26e-13 69.3
Msa0643540 AT1G54510.4 25.275 182 126 4 41 213 1 181 6.61e-13 68.9
Msa0643540 AT1G54510.2 25.275 182 126 4 41 213 1 181 6.61e-13 68.9
Msa0643540 AT1G54510.1 25.275 182 126 4 41 213 1 181 6.61e-13 68.9
Msa0643540 AT1G54510.3 25.275 182 126 4 41 213 1 181 6.61e-13 68.9
Msa0643540 AT5G66880.1 25.641 234 131 7 47 245 25 250 1.11e-12 67.8
Msa0643540 AT5G66880.2 25.641 234 131 7 47 245 25 250 1.11e-12 67.8
Msa0643540 AT4G10730.2 28.571 154 105 3 42 193 25 175 1.24e-12 68.2
Msa0643540 AT3G50500.1 25.532 235 130 8 47 245 26 251 1.43e-12 67.4
Msa0643540 AT5G57565.5 40.506 79 44 1 113 191 28 103 1.45e-12 64.3
Msa0643540 AT5G57565.1 40.506 79 44 1 113 191 28 103 1.45e-12 64.3
Msa0643540 AT4G10730.1 28.571 154 105 3 42 193 45 195 1.49e-12 67.8
Msa0643540 AT4G36070.1 25.571 219 132 6 48 236 75 292 1.70e-12 67.8
Msa0643540 AT2G31500.1 25.692 253 151 7 36 254 59 308 1.76e-12 67.8
Msa0643540 AT3G04810.2 25.824 182 125 4 41 213 1 181 1.85e-12 67.8
Msa0643540 AT3G04810.1 25.824 182 125 4 41 213 1 181 1.85e-12 67.8
Msa0643540 AT3G04810.3 25.824 182 125 4 41 213 1 181 1.85e-12 67.8
Msa0643540 AT5G57630.3 30.070 143 70 4 122 237 2 141 1.93e-12 67.0
Msa0643540 AT5G57565.4 40.506 79 44 1 113 191 28 103 2.15e-12 64.7
Msa0643540 AT4G36070.2 25.571 219 132 6 48 236 75 292 2.43e-12 67.0
Msa0643540 AT1G53165.3 28.289 152 101 3 43 192 14 159 2.64e-12 67.0
Msa0643540 AT1G53165.1 28.289 152 101 3 43 192 14 159 2.99e-12 67.0
Msa0643540 AT1G53165.2 28.289 152 101 3 43 192 14 159 3.03e-12 67.0
Msa0643540 AT3G07980.1 34.653 101 66 0 92 192 67 167 4.49e-12 66.6
Msa0643540 AT3G07980.2 34.653 101 66 0 92 192 67 167 4.78e-12 66.6
Msa0643540 AT3G13530.1 31.933 119 78 1 74 192 52 167 8.25e-12 65.9
Msa0643540 AT2G35890.2 24.658 219 128 6 50 236 138 351 8.68e-12 65.5
Msa0643540 AT2G35890.1 24.658 219 128 6 50 236 138 351 8.68e-12 65.5
Msa0643540 AT4G24100.2 26.543 162 114 3 34 193 23 181 9.71e-12 65.5
Msa0643540 AT4G24100.1 26.543 162 114 3 34 193 23 181 9.89e-12 65.5
Msa0643540 AT4G24100.4 26.543 162 114 3 34 193 39 197 1.05e-11 65.5
Msa0643540 AT4G24100.3 26.543 162 114 3 34 193 39 197 1.07e-11 65.5
Msa0643540 AT3G63280.2 25.275 182 126 4 41 213 1 181 1.17e-11 65.1
Msa0643540 AT3G63280.3 25.275 182 126 4 41 213 1 181 1.17e-11 65.1
Msa0643540 AT3G63280.1 25.275 182 126 4 41 213 1 181 1.17e-11 65.1
Msa0643540 AT3G50500.2 24.793 242 130 8 47 245 26 258 1.36e-11 64.7
Msa0643540 AT3G63280.4 25.275 182 126 4 41 213 55 235 1.70e-11 64.7
Msa0643540 AT3G06630.1 27.891 147 94 4 50 191 440 579 1.82e-11 64.7
Msa0643540 AT3G06630.6 27.891 147 94 4 50 191 356 495 1.83e-11 64.7
Msa0643540 AT3G06630.7 27.891 147 94 4 50 191 440 579 1.84e-11 64.7
Msa0643540 AT3G06630.2 27.891 147 94 4 50 191 440 579 1.86e-11 64.7
Msa0643540 AT3G06630.4 27.891 147 94 4 50 191 440 579 1.91e-11 64.7
Msa0643540 AT3G06630.3 27.891 147 94 4 50 191 440 579 1.91e-11 64.7
Msa0643540 AT3G06630.5 27.891 147 94 4 50 191 440 579 1.91e-11 64.7
Msa0643540 AT5G14720.1 26.220 164 115 2 33 192 1 162 1.92e-11 64.7
Msa0643540 AT5G14720.2 26.220 164 115 2 33 192 1 162 1.92e-11 64.7
Msa0643540 AT3G15220.1 28.289 152 101 3 43 192 14 159 2.07e-11 64.7
Msa0643540 AT2G46700.1 23.504 234 137 7 34 236 144 366 2.44e-11 64.3
Msa0643540 AT3G21220.2 27.632 152 100 3 41 191 67 209 2.65e-11 63.5
Msa0643540 AT3G21220.1 27.632 152 100 3 41 191 67 209 2.65e-11 63.5
Msa0643540 AT3G44200.2 23.864 176 120 4 50 214 14 186 2.93e-11 64.3
Msa0643540 AT3G44200.1 23.864 176 120 4 50 214 14 186 2.93e-11 64.3
Msa0643540 AT3G46930.6 31.373 102 67 1 91 192 155 253 2.94e-11 63.5
Msa0643540 AT3G46930.4 31.373 102 67 1 91 192 251 349 3.28e-11 63.5
Msa0643540 AT3G46930.3 31.373 102 67 1 91 192 251 349 3.35e-11 63.5
Msa0643540 AT3G46930.5 31.373 102 67 1 91 192 216 314 3.83e-11 63.2
Msa0643540 AT3G46930.2 31.373 102 67 1 91 192 251 349 4.14e-11 63.5
Msa0643540 AT3G46930.1 31.373 102 67 1 91 192 216 314 4.33e-11 63.2
Msa0643540 AT3G01490.1 29.240 171 95 7 92 237 160 329 5.22e-11 62.8
Msa0643540 AT3G01490.2 31.111 135 75 4 92 208 160 294 5.29e-11 62.8
Msa0643540 AT1G10850.1 32.484 157 74 4 94 218 403 559 6.31e-11 63.2
Msa0643540 AT2G41140.1 22.624 221 133 5 53 236 127 346 6.49e-11 62.8
Msa0643540 AT4G24480.2 27.586 145 99 3 50 191 675 816 7.13e-11 63.2
Msa0643540 AT4G24480.3 27.586 145 99 3 50 191 675 816 8.25e-11 62.8
Msa0643540 AT1G53570.7 25.478 157 107 3 40 191 210 361 8.49e-11 62.4
Msa0643540 AT1G53570.6 25.478 157 107 3 40 191 210 361 8.56e-11 62.4
Msa0643540 AT1G70430.2 34.021 97 64 0 96 192 1 97 9.78e-11 62.4
Msa0643540 AT1G69220.1 27.273 143 101 2 50 192 255 394 9.97e-11 62.4

Find 78 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATATGAAATGATTTA+TGG 0.092144 4_3:+46567017 Msa0643540:CDS
CAAGTTGTGACAAGTTTATT+TGG 0.243801 4_3:+46563626 Msa0643540:five_prime_UTR
TTTATTTGGTATCCATATTC+AGG 0.244333 4_3:+46563640 Msa0643540:five_prime_UTR
TCATCCCTCCTATGAGGTTT+AGG 0.254352 4_3:-46563845 None:intergenic
TTTATGGATATACACCATTC+AGG 0.267405 4_3:+46567033 Msa0643540:CDS
CAGTCTCACCTGTTTACTTT+TGG 0.267410 4_3:-46567111 None:intergenic
GGATATAATATCTCTACTTT+AGG 0.294656 4_3:+46563569 Msa0643540:five_prime_UTR
TGATTCATCCAAAGATCTTC+TGG 0.299224 4_3:-46563806 None:intergenic
CCTGAGCCTAAGGGTTTAAT+TGG 0.300429 4_3:-46564765 None:intergenic
TGCCTATTCTTTCCCCTGAA+TGG 0.306614 4_3:-46567047 None:intergenic
TAAGCATTTATGAGACTGTT+TGG 0.308610 4_3:-46563480 None:intergenic
GGTCATAATAGGTGCTTGTT+TGG 0.320111 4_3:-46563532 None:intergenic
GAAGACAAATATGTAGATAT+TGG 0.334402 4_3:+46567928 Msa0643540:CDS
AGAACTCCCAGATGCTAATA+TGG 0.334812 4_3:+46563700 Msa0643540:exon
TCTTCCTTGAGAACCTTTGC+TGG 0.339820 4_3:-46565747 None:intergenic
ATCAGAAACCAGAAGATCTT+TGG 0.346732 4_3:+46563798 Msa0643540:intron
CCTTGAGAACCTTTGCTGGC+TGG 0.360973 4_3:-46565743 None:intergenic
GCCAGTGTCTCCTGAGCCTA+AGG 0.365182 4_3:-46564775 None:intergenic
AATTCACAGGGATAATATAT+AGG 0.367259 4_3:+46566166 Msa0643540:intron
AGCCTTCTCCATAGCCTTCA+TGG 0.376696 4_3:-46565112 None:intergenic
CATCCCTCCTATGAGGTTTA+GGG 0.384602 4_3:-46563844 None:intergenic
TAAATTTCCCAAAAGTAAAC+AGG 0.398615 4_3:+46567103 Msa0643540:CDS
AAGCATTTATGAGACTGTTT+GGG 0.407487 4_3:-46563479 None:intergenic
CTGGCTGGCGTTCAAGCAGC+AGG 0.408178 4_3:-46565728 None:intergenic
CAAATAAACTTGTCACAACT+TGG 0.415701 4_3:-46563625 None:intergenic
GCATATAATGCAGGAAGAAA+AGG 0.417869 4_3:-46565471 None:intergenic
GTCTTTCAGTGTCCATCTTG+TGG 0.424054 4_3:+46565062 Msa0643540:intron
TGATACAAATGAAGAAGAAA+AGG 0.428712 4_3:+46567894 Msa0643540:CDS
ATTCACAGGGATAATATATA+GGG 0.434714 4_3:+46566167 Msa0643540:intron
CACCATTCAGGGGAAAGAAT+AGG 0.439555 4_3:+46567045 Msa0643540:CDS
AGAAGAAAAGGGAAAGGAAA+AGG 0.459071 4_3:+46567906 Msa0643540:CDS
TTATTTGCATAAAGTTCTCT+AGG 0.468764 4_3:-46563451 None:intergenic
TTGATAACTGATTACTGCCC+TGG 0.473217 4_3:+46565693 Msa0643540:CDS
TGGTTCACCCTAAACCTCAT+AGG 0.491193 4_3:+46563837 Msa0643540:CDS
TTATGGATATACACCATTCA+GGG 0.496198 4_3:+46567034 Msa0643540:CDS
GATACAAATGAAGAAGAAAA+GGG 0.500211 4_3:+46567895 Msa0643540:CDS
AGCAGGAACAGTTCTCCTCC+AGG 0.500337 4_3:-46565711 None:intergenic
CCAATTAAACCCTTAGGCTC+AGG 0.506828 4_3:+46564765 Msa0643540:CDS
TTGGATGAATCATTCAAAAG+TGG 0.508239 4_3:+46563817 Msa0643540:CDS
TAGGCTCAGGAGACACTGGC+AGG 0.510995 4_3:+46564778 Msa0643540:CDS
CCCTTAGGCTCAGGAGACAC+TGG 0.524292 4_3:+46564774 Msa0643540:CDS
TTTAAGCCAATTAAACCCTT+AGG 0.527278 4_3:+46564759 Msa0643540:CDS
ATAGGAGGGATGATGCTGCT+TGG 0.530993 4_3:+46563855 Msa0643540:CDS
GCTTGAACGCCAGCCAGCAA+AGG 0.534335 4_3:+46565734 Msa0643540:CDS
CGCTGAAGTAGTTACTGCAT+TGG 0.538859 4_3:+46566004 Msa0643540:CDS
AAGAGAGGAGCATCAAGCTC+AGG 0.542448 4_3:-46567871 None:intergenic
TGAAAAGAAGCATATAATGC+AGG 0.543378 4_3:-46565480 None:intergenic
TGCCATGAAGGCTATGGAGA+AGG 0.545681 4_3:+46565110 Msa0643540:CDS
ATGGAGAGTGGAGAACAGAT+AGG 0.549248 4_3:+46564726 Msa0643540:CDS
GAGAGAAATTCTAGACATGT+TGG 0.549406 4_3:+46565443 Msa0643540:CDS
CATATAATGCAGGAAGAAAA+GGG 0.550199 4_3:-46565470 None:intergenic
CCAGTGTCTCCTGAGCCTAA+GGG 0.551377 4_3:-46564774 None:intergenic
GCAGCATCATCCCTCCTATG+AGG 0.554053 4_3:-46563851 None:intergenic
TTTAACATCTTGCAAACCAC+AGG 0.560569 4_3:+46566260 Msa0643540:CDS
TCTTCATTTGTATCAAAGAG+AGG 0.571595 4_3:-46567886 None:intergenic
TGCATAAAGTTCTCTAGGAT+AGG 0.572927 4_3:-46563446 None:intergenic
AATGTGTTACTACAGAGAAG+TGG 0.581984 4_3:+46566204 Msa0643540:CDS
AGAGCCTACCTTGACAATGA+AGG 0.585799 4_3:-46566031 None:intergenic
TGGGAAATTTAAGATCCTTG+TGG 0.588292 4_3:-46567091 None:intergenic
TTGGAGTACCTTCATTGTCA+AGG 0.588445 4_3:+46566023 Msa0643540:CDS
TTCACCCTAAACCTCATAGG+AGG 0.589268 4_3:+46563840 Msa0643540:CDS
CCAGCCAGCAAAGGTTCTCA+AGG 0.590167 4_3:+46565743 Msa0643540:CDS
TTCCACATAGCTCCACAAGA+TGG 0.591902 4_3:-46565074 None:intergenic
AGAGGAGCATCAAGCTCAGG+AGG 0.596149 4_3:-46567868 None:intergenic
GCAGGAACAGTTCTCCTCCA+GGG 0.600163 4_3:-46565710 None:intergenic
ATATGTAGATATTGGACAAG+AGG 0.605861 4_3:+46567936 Msa0643540:CDS
ACAGGTGCATAGAGCTTGCA+CGG 0.606359 4_3:+46565419 Msa0643540:intron
AAATGAAGAAGAAAAGGGAA+AGG 0.611446 4_3:+46567900 Msa0643540:CDS
TCACCCTAAACCTCATAGGA+GGG 0.634903 4_3:+46563841 Msa0643540:CDS
TATGGATATACACCATTCAG+GGG 0.635221 4_3:+46567035 Msa0643540:CDS
GTCCATCTTGTGGAGCTATG+TGG 0.640208 4_3:+46565072 Msa0643540:CDS
ATAACTGATTACTGCCCTGG+AGG 0.648048 4_3:+46565696 Msa0643540:CDS
ATTTGCAAATATTCTCCACA+AGG 0.648070 4_3:+46567076 Msa0643540:CDS
TGTTATGCTCAATCGTAACA+AGG 0.662284 4_3:+46565134 Msa0643540:CDS
CAATGCAGTAACTACTTCAG+CGG 0.662698 4_3:-46566003 None:intergenic
TTCTCAAGGAAGACGCAGTG+AGG 0.680474 4_3:+46565757 Msa0643540:CDS
TGCTTGGAGAGCTATTCAGA+AGG 0.681502 4_3:+46563871 Msa0643540:CDS
ATAATGCAGGAAGAAAAGGG+TGG 0.783120 4_3:-46565467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATGATAAAGATAATA+AGG - chr4_3:46563737-46563756 None:intergenic 10.0%
!! AAACAAAAATATTAAAGAAA+AGG - chr4_3:46565859-46565878 None:intergenic 10.0%
!!! TTTTATTTTAACTTATTTCA+AGG + chr4_3:46566092-46566111 Msa0643540:intron 10.0%
!!! TTTATTTTAACTTATTTCAA+GGG + chr4_3:46566093-46566112 Msa0643540:intron 10.0%
!!! TATATCCAAATTTTTCTTTT+TGG - chr4_3:46563556-46563575 None:intergenic 15.0%
!! ATGTTTAAAGAAGATATATT+AGG - chr4_3:46564318-46564337 None:intergenic 15.0%
!! TATATTTAGTAATACTTAAG+AGG - chr4_3:46564864-46564883 None:intergenic 15.0%
!! ATTACTAAATATATCTTCAA+TGG + chr4_3:46564871-46564890 Msa0643540:intron 15.0%
!!! TTTTTCTTTTTGGTCATAAT+AGG - chr4_3:46563546-46563565 None:intergenic 20.0%
!! TATGACCAAAAAGAAAAATT+TGG + chr4_3:46563548-46563567 Msa0643540:five_prime_UTR 20.0%
!! AGTCTCATAAATTTATGAAA+TGG + chr4_3:46564246-46564265 Msa0643540:intron 20.0%
!! GTGATTGTTCTTTAATATAA+CGG - chr4_3:46564281-46564300 None:intergenic 20.0%
!! TTAAAGAAGATATATTAGGA+TGG - chr4_3:46564314-46564333 None:intergenic 20.0%
!! AGAAGATTTCAATTTGAAAA+GGG - chr4_3:46564828-46564847 None:intergenic 20.0%
!! AAGAAGATTTCAATTTGAAA+AGG - chr4_3:46564829-46564848 None:intergenic 20.0%
!! AGTTATTAATTAGTAACTAG+AGG + chr4_3:46565524-46565543 Msa0643540:intron 20.0%
!!! TGTAACTAAAGTTTGTTATT+TGG - chr4_3:46565595-46565614 None:intergenic 20.0%
!! TGATGTATATGAATACATAT+AGG - chr4_3:46565795-46565814 None:intergenic 20.0%
!!! CACATTTAAAATTATTTGAG+TGG - chr4_3:46566338-46566357 None:intergenic 20.0%
!!! TCATTTTCTCAAATTATTCT+CGG + chr4_3:46566809-46566828 Msa0643540:intron 20.0%
!! TATTATTAAGTTATGAAGCA+CGG - chr4_3:46566855-46566874 None:intergenic 20.0%
!! CTTCTATATGAAATGATTTA+TGG + chr4_3:46567017-46567036 Msa0643540:CDS 20.0%
! TTATTTGCATAAAGTTCTCT+AGG - chr4_3:46563454-46563473 None:intergenic 25.0%
! GGATATAATATCTCTACTTT+AGG + chr4_3:46563569-46563588 Msa0643540:five_prime_UTR 25.0%
! TTTATTTGGTATCCATATTC+AGG + chr4_3:46563640-46563659 Msa0643540:five_prime_UTR 25.0%
!! TTTTTACCATATTAGCATCT+GGG - chr4_3:46563709-46563728 None:intergenic 25.0%
!! ATTTTTACCATATTAGCATC+TGG - chr4_3:46563710-46563729 None:intergenic 25.0%
!! TTTTGGTACTCGAAATTTTA+AGG + chr4_3:46564211-46564230 Msa0643540:intron 25.0%
!! TTTGGTACTCGAAATTTTAA+GGG + chr4_3:46564212-46564231 Msa0643540:intron 25.0%
!! CAAGTCTTAAATGATTTTGA+TGG - chr4_3:46564341-46564360 None:intergenic 25.0%
! GCTGACATAATTCAATTTAA+GGG + chr4_3:46564435-46564454 Msa0643540:intron 25.0%
! TTAGTAATACTTAAGAGGAT+TGG - chr4_3:46564859-46564878 None:intergenic 25.0%
! ATTGGAAAAAATAATGAGCA+TGG - chr4_3:46564998-46565017 None:intergenic 25.0%
!!! TTTTTTCCAATCAAGATTTG+TGG + chr4_3:46565007-46565026 Msa0643540:intron 25.0%
! CCAAAAAATTAGCAGTTAAA+AGG - chr4_3:46565194-46565213 None:intergenic 25.0%
!!! CCTTTTAACTGCTAATTTTT+TGG + chr4_3:46565191-46565210 Msa0643540:intron 25.0%
! GTTAACACTAACTTGATTAT+GGG - chr4_3:46565238-46565257 None:intergenic 25.0%
! AGTTAACACTAACTTGATTA+TGG - chr4_3:46565239-46565258 None:intergenic 25.0%
!!! AAAAAAAACCGTGTTTTTTC+CGG + chr4_3:46565291-46565310 Msa0643540:intron 25.0%
! TTTAAATTAACTAGAGCCAA+GGG - chr4_3:46565372-46565391 None:intergenic 25.0%
! TCTAGTTAATTTAAACCTGT+TGG + chr4_3:46565377-46565396 Msa0643540:intron 25.0%
!!! TCACTTTTGATAATAACTAC+AGG + chr4_3:46565401-46565420 Msa0643540:intron 25.0%
! TGCAAATTAATCAAGTTTCA+AGG - chr4_3:46565654-46565673 None:intergenic 25.0%
!! ATCATAAATTTAGAGCTTGA+AGG + chr4_3:46565811-46565830 Msa0643540:intron 25.0%
! AATTCACAGGGATAATATAT+AGG + chr4_3:46566166-46566185 Msa0643540:intron 25.0%
! ATTCACAGGGATAATATATA+GGG + chr4_3:46566167-46566186 Msa0643540:intron 25.0%
! ACTACAAATGACAAAAAGAA+AGG + chr4_3:46566397-46566416 Msa0643540:intron 25.0%
! TAAATTTCCCAAAAGTAAAC+AGG + chr4_3:46567103-46567122 Msa0643540:CDS 25.0%
!! AAAGCTGAACATTCAAATTT+TGG - chr4_3:46567366-46567385 None:intergenic 25.0%
! AATCTTAAATGTCATGATAC+AGG + chr4_3:46567406-46567425 Msa0643540:intron 25.0%
! GGTAATTAAAAACTACATGA+AGG - chr4_3:46567827-46567846 None:intergenic 25.0%
! TGATACAAATGAAGAAGAAA+AGG + chr4_3:46567894-46567913 Msa0643540:CDS 25.0%
! GATACAAATGAAGAAGAAAA+GGG + chr4_3:46567895-46567914 Msa0643540:CDS 25.0%
! GAAGACAAATATGTAGATAT+TGG + chr4_3:46567928-46567947 Msa0643540:CDS 25.0%
AAGCATTTATGAGACTGTTT+GGG - chr4_3:46563482-46563501 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG - chr4_3:46563483-46563502 None:intergenic 30.0%
CAAATAAACTTGTCACAACT+TGG - chr4_3:46563628-46563647 None:intergenic 30.0%
CAAGTTGTGACAAGTTTATT+TGG + chr4_3:46563626-46563645 Msa0643540:five_prime_UTR 30.0%
! CAGTTTTCTTTACCTGAATA+TGG - chr4_3:46563655-46563674 None:intergenic 30.0%
TTGGATGAATCATTCAAAAG+TGG + chr4_3:46563817-46563836 Msa0643540:CDS 30.0%
ATTGCAATAACAAGAAACTG+AGG - chr4_3:46563919-46563938 None:intergenic 30.0%
AACAATGGAAGACAAAACAA+TGG - chr4_3:46564140-46564159 None:intergenic 30.0%
! TAACGTGTAAATCAGCATTT+TGG + chr4_3:46564194-46564213 Msa0643540:intron 30.0%
!! TACTCGAAATTTTAAGGGTT+AGG + chr4_3:46564217-46564236 Msa0643540:intron 30.0%
AGAAGATATATTAGGATGGA+GGG - chr4_3:46564310-46564329 None:intergenic 30.0%
AAGAAGATATATTAGGATGG+AGG - chr4_3:46564311-46564330 None:intergenic 30.0%
!! AACATAGAACCTTTAAAGTC+AGG + chr4_3:46564398-46564417 Msa0643540:intron 30.0%
AGTTAACATCCTGACTTTAA+AGG - chr4_3:46564410-46564429 None:intergenic 30.0%
AAGTCAGGATGTTAACTAAA+TGG + chr4_3:46564413-46564432 Msa0643540:intron 30.0%
GGCTGACATAATTCAATTTA+AGG + chr4_3:46564434-46564453 Msa0643540:intron 30.0%
TTTAGTCCCTGAAATTGTAA+GGG - chr4_3:46564504-46564523 None:intergenic 30.0%
! TTTTAGTCCCTGAAATTGTA+AGG - chr4_3:46564505-46564524 None:intergenic 30.0%
! CAATACGTCGTTTAAAACAA+TGG - chr4_3:46564557-46564576 None:intergenic 30.0%
TACAAAATATGACAGTCATG+TGG - chr4_3:46564626-46564645 None:intergenic 30.0%
TTTAAGCCAATTAAACCCTT+AGG + chr4_3:46564759-46564778 Msa0643540:CDS 30.0%
TTATTGCCACAAATCTTGAT+TGG - chr4_3:46565016-46565035 None:intergenic 30.0%
! CTTTTCCGTAAGTATACTTT+TGG + chr4_3:46565264-46565283 Msa0643540:intron 30.0%
GTTTAAATTAACTAGAGCCA+AGG - chr4_3:46565373-46565392 None:intergenic 30.0%
ATTATCAAAAGTGAACCAAC+AGG - chr4_3:46565395-46565414 None:intergenic 30.0%
CATATAATGCAGGAAGAAAA+GGG - chr4_3:46565473-46565492 None:intergenic 30.0%
! TGAAAAGAAGCATATAATGC+AGG - chr4_3:46565483-46565502 None:intergenic 30.0%
! TGCATTATATGCTTCTTTTC+AGG + chr4_3:46565482-46565501 Msa0643540:CDS 30.0%
! TTAGTAACTAGAGGTGTATA+TGG + chr4_3:46565533-46565552 Msa0643540:intron 30.0%
! TAGTAACTAGAGGTGTATAT+GGG + chr4_3:46565534-46565553 Msa0643540:intron 30.0%
ATCGAATGAAATGGGAAATA+AGG - chr4_3:46565562-46565581 None:intergenic 30.0%
! ATCTGTTTTACTAGTGAGTA+TGG - chr4_3:46565893-46565912 None:intergenic 30.0%
AACTTATTTCAAGGGACAAA+TGG + chr4_3:46566101-46566120 Msa0643540:intron 30.0%
! TTTGTTTGTTGAGAATTCAC+AGG + chr4_3:46566153-46566172 Msa0643540:intron 30.0%
! TTGTTTGTTGAGAATTCACA+GGG + chr4_3:46566154-46566173 Msa0643540:intron 30.0%
TGAATTATCTTAGATACCTG+TGG - chr4_3:46566279-46566298 None:intergenic 30.0%
! ATTGGTTCAGCCATAAATAT+TGG - chr4_3:46566433-46566452 None:intergenic 30.0%
AAAGAATTTGATGCTCTCAT+TGG - chr4_3:46566451-46566470 None:intergenic 30.0%
!! AGAGCATCAAATTCTTTTGT+TGG + chr4_3:46566454-46566473 Msa0643540:intron 30.0%
TAAGTTCAGAAACAACAAAC+CGG - chr4_3:46566499-46566518 None:intergenic 30.0%
! TGATAGTTTAATGCTTTTGC+AGG + chr4_3:46566629-46566648 Msa0643540:intron 30.0%
! CTTTTGCAGGAAATTATTAC+TGG + chr4_3:46566642-46566661 Msa0643540:intron 30.0%
!! GTTTTAGCAAACCACAAAAT+TGG + chr4_3:46566897-46566916 Msa0643540:intron 30.0%
!!! TTTTTGGTTCTCCAATTTTG+TGG - chr4_3:46566911-46566930 None:intergenic 30.0%
!!! ATATTTTTTCTGTGTGCTAG+TGG + chr4_3:46566950-46566969 Msa0643540:intron 30.0%
! CTGCATGTTTTTCTATTTTC+AGG + chr4_3:46566990-46567009 Msa0643540:intron 30.0%
TTTATGGATATACACCATTC+AGG + chr4_3:46567033-46567052 Msa0643540:CDS 30.0%
TTATGGATATACACCATTCA+GGG + chr4_3:46567034-46567053 Msa0643540:CDS 30.0%
ATTTGCAAATATTCTCCACA+AGG + chr4_3:46567076-46567095 Msa0643540:CDS 30.0%
! TTTTGATCACGTTATGAAAG+TGG + chr4_3:46567241-46567260 Msa0643540:intron 30.0%
TAAGATGATGCATGTTATCA+AGG - chr4_3:46567324-46567343 None:intergenic 30.0%
!! TTATTTGAGTTGTTCGATTG+TGG + chr4_3:46567687-46567706 Msa0643540:intron 30.0%
!!! GTTATTTTAAAAGCCAAACC+AGG - chr4_3:46567777-46567796 None:intergenic 30.0%
! TTTCTGGCAGTATAAGAAAT+AGG - chr4_3:46567848-46567867 None:intergenic 30.0%
TCTTCATTTGTATCAAAGAG+AGG - chr4_3:46567889-46567908 None:intergenic 30.0%
AAATGAAGAAGAAAAGGGAA+AGG + chr4_3:46567900-46567919 Msa0643540:CDS 30.0%
ATATGTAGATATTGGACAAG+AGG + chr4_3:46567936-46567955 Msa0643540:CDS 30.0%
!! TGCATAAAGTTCTCTAGGAT+AGG - chr4_3:46563449-46563468 None:intergenic 35.0%
CCAAAAGGTTAAGTAACAAG+TGG - chr4_3:46563773-46563792 None:intergenic 35.0%
!! CCACTTGTTACTTAACCTTT+TGG + chr4_3:46563770-46563789 Msa0643540:intron 35.0%
!! AAAGATCTTCTGGTTTCTGA+TGG - chr4_3:46563799-46563818 None:intergenic 35.0%
ATCAGAAACCAGAAGATCTT+TGG + chr4_3:46563798-46563817 Msa0643540:intron 35.0%
TGATTCATCCAAAGATCTTC+TGG - chr4_3:46563809-46563828 None:intergenic 35.0%
ACATACATAGTAAACCCACT+TGG + chr4_3:46564007-46564026 Msa0643540:intron 35.0%
CATACATAGTAAACCCACTT+GGG + chr4_3:46564008-46564027 Msa0643540:intron 35.0%
TGATCAACCCTTACAATTTC+AGG + chr4_3:46564494-46564513 Msa0643540:intron 35.0%
GATCAACCCTTACAATTTCA+GGG + chr4_3:46564495-46564514 Msa0643540:intron 35.0%
ACAGTCATGTGGAACAAAAA+AGG - chr4_3:46564615-46564634 None:intergenic 35.0%
GCTAATTGATTATGTGACCA+TGG + chr4_3:46564692-46564711 Msa0643540:intron 35.0%
! TGATCAACATTTTGCCATGA+AGG + chr4_3:46565098-46565117 Msa0643540:CDS 35.0%
TGTTATGCTCAATCGTAACA+AGG + chr4_3:46565134-46565153 Msa0643540:CDS 35.0%
AACACTAACTTGATTATGGG+AGG - chr4_3:46565235-46565254 None:intergenic 35.0%
! TTCCGTAAGTATACTTTTGG+AGG + chr4_3:46565267-46565286 Msa0643540:intron 35.0%
! TCCGTAAGTATACTTTTGGA+GGG + chr4_3:46565268-46565287 Msa0643540:intron 35.0%
! TCCCTCCAAAAGTATACTTA+CGG - chr4_3:46565272-46565291 None:intergenic 35.0%
GTATACTTCCGGAAAAAACA+CGG - chr4_3:46565302-46565321 None:intergenic 35.0%
! TCACTTCAGAAGTATACTTC+CGG - chr4_3:46565313-46565332 None:intergenic 35.0%
GAGAGAAATTCTAGACATGT+TGG + chr4_3:46565443-46565462 Msa0643540:CDS 35.0%
GCATATAATGCAGGAAGAAA+AGG - chr4_3:46565474-46565493 None:intergenic 35.0%
! GCTTTTGCATCGAATGAAAT+GGG - chr4_3:46565570-46565589 None:intergenic 35.0%
! AGCTTTTGCATCGAATGAAA+TGG - chr4_3:46565571-46565590 None:intergenic 35.0%
! CTCTGTAGTAACACATTTTC+TGG - chr4_3:46566201-46566220 None:intergenic 35.0%
! AATGTGTTACTACAGAGAAG+TGG + chr4_3:46566204-46566223 Msa0643540:CDS 35.0%
TTTAACATCTTGCAAACCAC+AGG + chr4_3:46566260-46566279 Msa0643540:CDS 35.0%
TGACAAAAAGAAAGGACAAC+AGG + chr4_3:46566405-46566424 Msa0643540:intron 35.0%
ACAACAGGCTCCAATATTTA+TGG + chr4_3:46566420-46566439 Msa0643540:intron 35.0%
!! CAGGAAATTATTACTGGTTC+TGG + chr4_3:46566648-46566667 Msa0643540:intron 35.0%
! ATGTACGCGTGTTTCATTTT+TGG - chr4_3:46566927-46566946 None:intergenic 35.0%
TATGGATATACACCATTCAG+GGG + chr4_3:46567035-46567054 Msa0643540:CDS 35.0%
! TGGGAAATTTAAGATCCTTG+TGG - chr4_3:46567094-46567113 None:intergenic 35.0%
!! AGTCTCACCTGTTTACTTTT+GGG - chr4_3:46567113-46567132 None:intergenic 35.0%
GGAGACATCAAAAACCATAA+CGG + chr4_3:46567262-46567281 Msa0643540:intron 35.0%
! TGTTATCAAGGTTTCAGGTA+CGG - chr4_3:46567312-46567331 None:intergenic 35.0%
ATGCATGTTATCAAGGTTTC+AGG - chr4_3:46567317-46567336 None:intergenic 35.0%
! GCTGAACATTCAAATTTTGG+TGG - chr4_3:46567363-46567382 None:intergenic 35.0%
! AACAAGTTGAATGTCTGGTT+TGG - chr4_3:46567637-46567656 None:intergenic 35.0%
TCAAATAACCGAACCATACA+CGG - chr4_3:46567675-46567694 None:intergenic 35.0%
!! TGTTTTAAACTGCTCGAATC+GGG - chr4_3:46567719-46567738 None:intergenic 35.0%
!! CTGTTTTAAACTGCTCGAAT+CGG - chr4_3:46567720-46567739 None:intergenic 35.0%
AAAACAGTTGAACCATGATC+TGG + chr4_3:46567733-46567752 Msa0643540:intron 35.0%
AGAAGAAAAGGGAAAGGAAA+AGG + chr4_3:46567906-46567925 Msa0643540:CDS 35.0%
GGTCATAATAGGTGCTTGTT+TGG - chr4_3:46563535-46563554 None:intergenic 40.0%
AGAACTCCCAGATGCTAATA+TGG + chr4_3:46563700-46563719 Msa0643540:exon 40.0%
CTATATAACCCACCCAAAGT+GGG - chr4_3:46564107-46564126 None:intergenic 40.0%
ACTATATAACCCACCCAAAG+TGG - chr4_3:46564108-46564127 None:intergenic 40.0%
! ACATTTTGCCATGAAGGCTA+TGG + chr4_3:46565104-46565123 Msa0643540:CDS 40.0%
ATAATGCAGGAAGAAAAGGG+TGG - chr4_3:46565470-46565489 None:intergenic 40.0%
! TTGATAACTGATTACTGCCC+TGG + chr4_3:46565693-46565712 Msa0643540:CDS 40.0%
AGTAGCTGACATGTTGAAGA+AGG - chr4_3:46565919-46565938 None:intergenic 40.0%
CAATGCAGTAACTACTTCAG+CGG - chr4_3:46566006-46566025 None:intergenic 40.0%
! TTGGAGTACCTTCATTGTCA+AGG + chr4_3:46566023-46566042 Msa0643540:CDS 40.0%
AGTACCTTCATTGTCAAGGT+AGG + chr4_3:46566027-46566046 Msa0643540:intron 40.0%
ATTATGTGTCAGTGTCGTGT+CGG - chr4_3:46566775-46566794 None:intergenic 40.0%
! CAGTCTCACCTGTTTACTTT+TGG - chr4_3:46567114-46567133 None:intergenic 40.0%
TGCAAAGAGATCCAAATAGC+AGG + chr4_3:46567465-46567484 Msa0643540:intron 40.0%
AAGAGATCCAAATAGCAGGT+TGG + chr4_3:46567469-46567488 Msa0643540:intron 40.0%
AGAGATCCAAATAGCAGGTT+GGG + chr4_3:46567470-46567489 Msa0643540:intron 40.0%
TTTGAACCCAACCTGCTATT+TGG - chr4_3:46567479-46567498 None:intergenic 40.0%
! AATAGCAGGTTGGGTTCAAA+TGG + chr4_3:46567479-46567498 Msa0643540:intron 40.0%
TCAAAAACCATCCCTTCTTC+AGG + chr4_3:46567516-46567535 Msa0643540:intron 40.0%
CAAAAACCATCCCTTCTTCA+GGG + chr4_3:46567517-46567536 Msa0643540:intron 40.0%
AAAAACCATCCCTTCTTCAG+GGG + chr4_3:46567518-46567537 Msa0643540:intron 40.0%
! CTTGTTATGTTACCGTGCAT+CGG - chr4_3:46567562-46567581 None:intergenic 40.0%
!! GTTGAATGTCTGGTTTGGTT+CGG - chr4_3:46567632-46567651 None:intergenic 40.0%
! GGTTCAACAAGTTGAATGTC+TGG - chr4_3:46567642-46567661 None:intergenic 40.0%
CAAATGAGAACTCCAGATCA+TGG - chr4_3:46567748-46567767 None:intergenic 40.0%
! GATCTGGAGTTCTCATTTGT+CGG + chr4_3:46567749-46567768 Msa0643540:intron 40.0%
GGTTTCTGATGGTAGCCAAA+AGG - chr4_3:46563788-46563807 None:intergenic 45.0%
TGGTTCACCCTAAACCTCAT+AGG + chr4_3:46563837-46563856 Msa0643540:CDS 45.0%
TTCACCCTAAACCTCATAGG+AGG + chr4_3:46563840-46563859 Msa0643540:CDS 45.0%
TCACCCTAAACCTCATAGGA+GGG + chr4_3:46563841-46563860 Msa0643540:CDS 45.0%
CATCCCTCCTATGAGGTTTA+GGG - chr4_3:46563847-46563866 None:intergenic 45.0%
TCATCCCTCCTATGAGGTTT+AGG - chr4_3:46563848-46563867 None:intergenic 45.0%
TGCTTGGAGAGCTATTCAGA+AGG + chr4_3:46563871-46563890 Msa0643540:CDS 45.0%
CATAGTAAACCCACTTGGGT+TGG + chr4_3:46564012-46564031 Msa0643540:intron 45.0%
TTGGCCTAGTGGTATTTGCT+TGG + chr4_3:46564031-46564050 Msa0643540:intron 45.0%
TGGCCTAGTGGTATTTGCTT+GGG + chr4_3:46564032-46564051 Msa0643540:intron 45.0%
GATCCCAAGCAAATACCACT+AGG - chr4_3:46564038-46564057 None:intergenic 45.0%
AGTGGTATTTGCTTGGGATC+TGG + chr4_3:46564038-46564057 Msa0643540:intron 45.0%
GTGGTATTTGCTTGGGATCT+GGG + chr4_3:46564039-46564058 Msa0643540:intron 45.0%
GAATCGAACCTGAGACCTTA+AGG - chr4_3:46564076-46564095 None:intergenic 45.0%
ATTCTCTCTGGTCCCACTTT+GGG + chr4_3:46564092-46564111 Msa0643540:intron 45.0%
GAGCAAGCACGACAAAACAA+TGG - chr4_3:46564155-46564174 None:intergenic 45.0%
!! GACCATGGTTTTGCAGATCA+TGG + chr4_3:46564707-46564726 Msa0643540:intron 45.0%
CTCCATGATCTGCAAAACCA+TGG - chr4_3:46564712-46564731 None:intergenic 45.0%
! GTTTTGCAGATCATGGAGAG+TGG + chr4_3:46564714-46564733 Msa0643540:intron 45.0%
ATGGAGAGTGGAGAACAGAT+AGG + chr4_3:46564726-46564745 Msa0643540:CDS 45.0%
CCTGAGCCTAAGGGTTTAAT+TGG - chr4_3:46564768-46564787 None:intergenic 45.0%
CCAATTAAACCCTTAGGCTC+AGG + chr4_3:46564765-46564784 Msa0643540:CDS 45.0%
GTCTTTCAGTGTCCATCTTG+TGG + chr4_3:46565062-46565081 Msa0643540:intron 45.0%
TTCCACATAGCTCCACAAGA+TGG - chr4_3:46565077-46565096 None:intergenic 45.0%
AGCTCGCTTATGTTATCCCT+TGG + chr4_3:46565353-46565372 Msa0643540:intron 45.0%
ATAACTGATTACTGCCCTGG+AGG + chr4_3:46565696-46565715 Msa0643540:CDS 45.0%
TCTTCCTTGAGAACCTTTGC+TGG - chr4_3:46565750-46565769 None:intergenic 45.0%
CGCTGAAGTAGTTACTGCAT+TGG + chr4_3:46566004-46566023 Msa0643540:CDS 45.0%
AGAGCCTACCTTGACAATGA+AGG - chr4_3:46566034-46566053 None:intergenic 45.0%
AGGGACAAATGGTACACTCT+TGG + chr4_3:46566112-46566131 Msa0643540:intron 45.0%
AATGGTACACTCTTGGCATG+AGG + chr4_3:46566119-46566138 Msa0643540:intron 45.0%
! CACAGAAGAGTACATAGCTC+CGG + chr4_3:46566477-46566496 Msa0643540:intron 45.0%
ACCAATCCACAGCACTAGTA+TGG - chr4_3:46566674-46566693 None:intergenic 45.0%
!! ATACTAGTGCTGTGGATTGG+TGG + chr4_3:46566673-46566692 Msa0643540:intron 45.0%
!! TACTAGTGCTGTGGATTGGT+GGG + chr4_3:46566674-46566693 Msa0643540:intron 45.0%
GTCAGACATTGGACAAGTCT+CGG - chr4_3:46566751-46566770 None:intergenic 45.0%
CACCATTCAGGGGAAAGAAT+AGG + chr4_3:46567045-46567064 Msa0643540:CDS 45.0%
TGCCTATTCTTTCCCCTGAA+TGG - chr4_3:46567050-46567069 None:intergenic 45.0%
CATCAAAAACCATAACGGCG+CGG + chr4_3:46567267-46567286 Msa0643540:intron 45.0%
! CAGTTGATACCCCTGAAGAA+GGG - chr4_3:46567530-46567549 None:intergenic 45.0%
!! CTTCTTCAGGGGTATCAACT+GGG + chr4_3:46567529-46567548 Msa0643540:intron 45.0%
ACCATGAACTACACCGTGTA+TGG + chr4_3:46567659-46567678 Msa0643540:intron 45.0%
ACCATACACGGTGTAGTTCA+TGG - chr4_3:46567663-46567682 None:intergenic 45.0%
GAACTACACCGTGTATGGTT+CGG + chr4_3:46567664-46567683 Msa0643540:intron 45.0%
ATAGGAGGGATGATGCTGCT+TGG + chr4_3:46563855-46563874 Msa0643540:CDS 50.0%
TCGAACCTGAGACCTTAAGG+AGG - chr4_3:46564073-46564092 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+TGG + chr4_3:46564080-46564099 Msa0643540:intron 50.0%
GATTCTCTCTGGTCCCACTT+TGG + chr4_3:46564091-46564110 Msa0643540:intron 50.0%
GTCCATCTTGTGGAGCTATG+TGG + chr4_3:46565072-46565091 Msa0643540:CDS 50.0%
TGCCATGAAGGCTATGGAGA+AGG + chr4_3:46565110-46565129 Msa0643540:CDS 50.0%
AGCCTTCTCCATAGCCTTCA+TGG - chr4_3:46565115-46565134 None:intergenic 50.0%
ACAGGTGCATAGAGCTTGCA+CGG + chr4_3:46565419-46565438 Msa0643540:intron 50.0%
TTCTCAAGGAAGACGCAGTG+AGG + chr4_3:46565757-46565776 Msa0643540:CDS 50.0%
TTCTGGCCATACTAGTGCTG+TGG + chr4_3:46566665-46566684 Msa0643540:intron 50.0%
GCCATACTAGTGCTGTGGAT+TGG + chr4_3:46566670-46566689 Msa0643540:intron 50.0%
CGCTGTACCACTGACAATTC+TGG + chr4_3:46566724-46566743 Msa0643540:intron 50.0%
TCTCGGACCAGAATTGTCAG+TGG - chr4_3:46566734-46566753 None:intergenic 50.0%
ACGGTCTACGACCGTAATAG+TGG - chr4_3:46567293-46567312 None:intergenic 50.0%
! AGCAGGTTGGGTTCAAATGG+AGG + chr4_3:46567482-46567501 Msa0643540:intron 50.0%
TGATACCCCTGAAGAAGGGA+TGG - chr4_3:46567526-46567545 None:intergenic 50.0%
! CCAGTTGATACCCCTGAAGA+AGG - chr4_3:46567531-46567550 None:intergenic 50.0%
!! CCTTCTTCAGGGGTATCAAC+TGG + chr4_3:46567528-46567547 Msa0643540:intron 50.0%
TGTTACCGTGCATCGGACTA+GGG - chr4_3:46567555-46567574 None:intergenic 50.0%
ATGTTACCGTGCATCGGACT+AGG - chr4_3:46567556-46567575 None:intergenic 50.0%
! AGTTCTCATTTGTCGGTGCC+TGG + chr4_3:46567756-46567775 Msa0643540:intron 50.0%
! TCATTTGTCGGTGCCTGGTT+TGG + chr4_3:46567761-46567780 Msa0643540:intron 50.0%
CATCAAGCTCAGGAGGTTTC+TGG - chr4_3:46567864-46567883 None:intergenic 50.0%
!! AAGAGAGGAGCATCAAGCTC+AGG - chr4_3:46567874-46567893 None:intergenic 50.0%
GCAGCATCATCCCTCCTATG+AGG - chr4_3:46563854-46563873 None:intergenic 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr4_3:46564024-46564043 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr4_3:46564025-46564044 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCCTTA+AGG + chr4_3:46564058-46564077 Msa0643540:intron 55.0%
GTGCTCCTCCTTAAGGTCTC+AGG + chr4_3:46564065-46564084 Msa0643540:intron 55.0%
TCTCTGGTCCCACTTTGGGT+GGG + chr4_3:46564096-46564115 Msa0643540:intron 55.0%
CCAGTGTCTCCTGAGCCTAA+GGG - chr4_3:46564777-46564796 None:intergenic 55.0%
GCAGGAACAGTTCTCCTCCA+GGG - chr4_3:46565713-46565732 None:intergenic 55.0%
AGCAGGAACAGTTCTCCTCC+AGG - chr4_3:46565714-46565733 None:intergenic 55.0%
CCTTGAGAACCTTTGCTGGC+TGG - chr4_3:46565746-46565765 None:intergenic 55.0%
CCAGCCAGCAAAGGTTCTCA+AGG + chr4_3:46565743-46565762 Msa0643540:CDS 55.0%
!! GTCGTGTCGGTGTCAGACAT+TGG - chr4_3:46566762-46566781 None:intergenic 55.0%
TAATAGTGGCCGCGCCGTTA+TGG - chr4_3:46567279-46567298 None:intergenic 55.0%
TAACGGCGCGGCCACTATTA+CGG + chr4_3:46567279-46567298 Msa0643540:intron 55.0%
!! AGAGGAGCATCAAGCTCAGG+AGG - chr4_3:46567871-46567890 None:intergenic 55.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr4_3:46564020-46564039 Msa0643540:intron 60.0%
CTCTCTGGTCCCACTTTGGG+TGG + chr4_3:46564095-46564114 Msa0643540:intron 60.0%
CCCTTAGGCTCAGGAGACAC+TGG + chr4_3:46564774-46564793 Msa0643540:CDS 60.0%
GCCAGTGTCTCCTGAGCCTA+AGG - chr4_3:46564778-46564797 None:intergenic 60.0%
TAGGCTCAGGAGACACTGGC+AGG + chr4_3:46564778-46564797 Msa0643540:CDS 60.0%
GCTTGAACGCCAGCCAGCAA+AGG + chr4_3:46565734-46565753 Msa0643540:CDS 60.0%
!! GCTGTGGATTGGTGGGCTCT+TGG + chr4_3:46566681-46566700 Msa0643540:intron 60.0%
CTGGCTGGCGTTCAAGCAGC+AGG - chr4_3:46565731-46565750 None:intergenic 65.0%
CTGGGCCCTAGTCCGATGCA+CGG + chr4_3:46567547-46567566 Msa0643540:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 46563322 46567975 46563322 ID=Msa0643540;Name=Msa0643540
chr4_3 mRNA 46563322 46567975 46563322 ID=Msa0643540-mRNA-1;Parent=Msa0643540;Name=Msa0643540-mRNA-1;_AED=0.19;_eAED=0.19;_QI=397|0.7|0.63|0.72|1|1|11|0|277
chr4_3 exon 46563322 46563721 46563322 ID=Msa0643540-mRNA-1:exon:10840;Parent=Msa0643540-mRNA-1
chr4_3 exon 46563803 46563892 46563803 ID=Msa0643540-mRNA-1:exon:10841;Parent=Msa0643540-mRNA-1
chr4_3 exon 46564723 46564799 46564723 ID=Msa0643540-mRNA-1:exon:10842;Parent=Msa0643540-mRNA-1
chr4_3 exon 46565071 46565155 46565071 ID=Msa0643540-mRNA-1:exon:10843;Parent=Msa0643540-mRNA-1
chr4_3 exon 46565423 46565503 46565423 ID=Msa0643540-mRNA-1:exon:10844;Parent=Msa0643540-mRNA-1
chr4_3 exon 46565675 46565778 46565675 ID=Msa0643540-mRNA-1:exon:10845;Parent=Msa0643540-mRNA-1
chr4_3 exon 46565995 46566044 46565995 ID=Msa0643540-mRNA-1:exon:10846;Parent=Msa0643540-mRNA-1
chr4_3 exon 46566175 46566281 46566175 ID=Msa0643540-mRNA-1:exon:10847;Parent=Msa0643540-mRNA-1
chr4_3 exon 46566651 46566663 46566651 ID=Msa0643540-mRNA-1:exon:10848;Parent=Msa0643540-mRNA-1
chr4_3 exon 46567012 46567124 46567012 ID=Msa0643540-mRNA-1:exon:10849;Parent=Msa0643540-mRNA-1
chr4_3 exon 46567865 46567975 46567865 ID=Msa0643540-mRNA-1:exon:10850;Parent=Msa0643540-mRNA-1
chr4_3 five_prime_UTR 46563322 46563718 46563322 ID=Msa0643540-mRNA-1:five_prime_utr;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46563719 46563721 46563719 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46563803 46563892 46563803 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46564723 46564799 46564723 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46565071 46565155 46565071 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46565423 46565503 46565423 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46565675 46565778 46565675 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46565995 46566044 46565995 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46566175 46566281 46566175 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46566651 46566663 46566651 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46567012 46567124 46567012 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
chr4_3 CDS 46567865 46567975 46567865 ID=Msa0643540-mRNA-1:cds;Parent=Msa0643540-mRNA-1
Gene Sequence

>Msa0643540

ATGAAACCAGAAGATCTTTGGATGAATCATTCAAAAGTGGTTCACCCTAAACCTCATAGGAGGGATGATGCTGCTTGGAGAGCTATTCAGAAGATCATGGAGAGTGGAGAACAGATAGGCTTGAAACATTTTAAGCCAATTAAACCCTTAGGCTCAGGAGACACTGGCAGTGTCCATCTTGTGGAGCTATGTGGAACTGATCAACATTTTGCCATGAAGGCTATGGAGAAGGCTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACGGAGAGAGAAATTCTAGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCTTTTCAGACGAAAACGCATATTTGTTTGATAACTGATTACTGCCCTGGAGGAGAACTGTTCCTGCTGCTTGAACGCCAGCCAGCAAAGGTTCTCAAGGAAGACGCAGTGAGATTTTATGCCGCTGAAGTAGTTACTGCATTGGAGTACCTTCATTGTCAAGGGATAATATATAGGGATTTGAAGCCAGAAAATGTGTTACTACAGAGAAGTGGACATGTATCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGGAAATTATTACTGGAATTCTTCTATATGAAATGATTTATGGATATACACCATTCAGGGGAAAGAATAGGCAAAGAACATTTGCAAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGAAACCTCCTGAGCTTGATGCTCCTCTCTTTGATACAAATGAAGAAGAAAAGGGAAAGGAAAAGGAAGACAAATATGTAGATATTGGACAAGAGGATATGAGTGTCTTCTGA

Protein sequence

>Msa0643540

MKPEDLWMNHSKVVHPKPHRRDDAAWRAIQKIMESGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDQHFAMKAMEKAVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLERQPAKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENVLLQRSGHVSLTDFDLSCLTSCKPQEIITGILLYEMIYGYTPFRGKNRQRTFANILHKDLKFPKSKQKPPELDAPLFDTNEEEKGKEKEDKYVDIGQEDMSVF*