AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401370 MtrunA17_Chr3g0090071 97.482 278 7 0 73 350 114 391 0.0 553
Msa0401370 MtrunA17_Chr4g0020011 73.702 289 74 1 63 349 92 380 5.36e-157 445
Msa0401370 MtrunA17_Chr4g0039291 64.493 276 96 1 73 346 113 388 2.18e-131 380
Msa0401370 MtrunA17_Chr3g0114241 35.034 294 171 7 67 346 429 716 3.40e-50 179
Msa0401370 MtrunA17_Chr2g0320711 26.667 285 196 5 71 346 155 435 2.20e-29 117
Msa0401370 MtrunA17_Chr7g0240091 29.329 283 187 5 73 346 170 448 2.00e-26 109
Msa0401370 MtrunA17_Chr7g0245291 28.947 228 147 5 122 347 112 326 2.22e-23 99.4
Msa0401370 MtrunA17_Chr7g0245261 29.694 229 144 6 122 347 105 319 3.55e-20 90.1
Msa0401370 MtrunA17_Chr2g0318431 24.255 235 165 3 72 299 180 408 1.30e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401370 AT5G12470.1 63.538 277 99 1 73 347 108 384 4.31e-130 377
Msa0401370 AT3G56140.2 36.301 292 167 6 73 350 207 493 1.79e-53 184
Msa0401370 AT2G40400.2 36.986 292 165 6 73 350 417 703 1.16e-52 185
Msa0401370 AT2G40400.1 36.986 292 165 6 73 350 417 703 1.16e-52 185
Msa0401370 AT3G56140.1 36.301 292 167 6 73 350 426 712 2.34e-52 185
Msa0401370 AT3G56140.3 36.301 292 167 6 73 350 426 712 2.34e-52 185
Msa0401370 AT2G40400.3 36.555 238 133 5 73 296 417 650 1.32e-37 142
Msa0401370 AT5G22790.1 28.028 289 188 7 71 346 152 433 9.33e-29 115
Msa0401370 AT2G37860.3 28.276 290 185 8 71 346 152 432 2.00e-28 115
Msa0401370 AT2G37860.4 28.276 290 185 8 71 346 152 432 2.00e-28 115
Msa0401370 AT3G08630.1 29.362 235 143 6 122 349 104 322 1.21e-23 100
Msa0401370 AT3G08640.1 29.741 232 146 5 122 349 107 325 1.46e-23 100
Msa0401370 AT2G37860.2 26.368 201 134 4 71 262 152 347 1.71e-14 73.9
Msa0401370 AT2G37860.1 26.368 201 134 4 71 262 152 347 1.71e-14 73.9
Msa0401370 AT5G24690.1 25.726 241 154 6 72 299 179 407 1.43e-12 68.9

Find 125 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAATTTGGAGGGTTTA+AGG 0.142353 3_2:-26928178 Msa0401370:CDS
TTAGAACTGCAAATACTTAT+TGG 0.193641 3_2:-26924968 Msa0401370:CDS
CTTATTGCCAAATTCTTCTA+TGG 0.222326 3_2:-26926235 Msa0401370:CDS
AATTATTGAGCAACGGATTC+TGG 0.230169 3_2:-26925042 Msa0401370:CDS
GGAGGTGGTGGTGATGGTGG+TGG 0.230653 3_2:-26928391 Msa0401370:CDS
AGGACATCCATAGAAGAATT+TGG 0.239459 3_2:+26926228 None:intergenic
TAGAACTGCAAATACTTATT+GGG 0.258143 3_2:-26924967 Msa0401370:CDS
GGTGGTGGTGATGGTGGTGG+GGG 0.260165 3_2:-26928388 Msa0401370:CDS
GTTAAGGCGGGGAGGGTTCC+TGG 0.280545 3_2:-26928255 Msa0401370:CDS
GGCAATGGAGGCGGGTTTCC+AGG 0.282724 3_2:-26928418 Msa0401370:CDS
ATGGCTGTAGTGGTAGAATT+TGG 0.285367 3_2:+26928585 None:intergenic
TTGGTTAAGCCTTTATCTTC+TGG 0.287578 3_2:+26924812 None:intergenic
TTCAGGTGGCTGTTAAAATT+TGG 0.299303 3_2:-26928189 Msa0401370:CDS
AGTGGAGGTGGTGGTGATGG+TGG 0.300664 3_2:-26928394 Msa0401370:CDS
GTTACTTTATCTTAGGTAAC+AGG 0.304911 3_2:-26926337 Msa0401370:intron
AGGTGGTGGTGATGGTGGTG+GGG 0.310725 3_2:-26928389 Msa0401370:CDS
CATCTCTTATGCAGCGTAAC+GGG 0.313556 3_2:-26925953 Msa0401370:intron
GTGGTGGTGATGGTGGTGGG+GGG 0.315241 3_2:-26928387 Msa0401370:CDS
GTTCTTAACTAAGCTTGTTA+TGG 0.322891 3_2:-26928133 Msa0401370:CDS
TAGGTAACAGGCATTGTAAC+AGG 0.333404 3_2:-26926325 Msa0401370:CDS
GAGGTGGTGGTGATGGTGGT+GGG 0.338903 3_2:-26928390 Msa0401370:CDS
CGACGGTGGAGGTGGGGAAG+AGG 0.344446 3_2:-26928362 Msa0401370:CDS
TGGAGGAGTCAGTTGTGTTC+AGG 0.346622 3_2:-26928206 Msa0401370:CDS
TTCTCAGCGGGCAATGGAGG+CGG 0.361329 3_2:-26928427 Msa0401370:CDS
GGATTTGGCTGTTGCTGTTA+AGG 0.364292 3_2:-26928271 Msa0401370:CDS
CAGTTAGTATAAGTTTGTTT+TGG 0.370260 3_2:+26925006 None:intergenic
GCTACACTGGTTGAGATTAC+AGG 0.377802 3_2:+26925443 None:intergenic
CTAAGAGTTGACAACTTAGT+TGG 0.377982 3_2:+26924547 None:intergenic
CAAAACAAACTTATACTAAC+TGG 0.384571 3_2:-26925005 Msa0401370:CDS
GGAGAATGATGCAAATGATT+TGG 0.390452 3_2:+26928463 None:intergenic
TATGAGTTCAATTCAAAGCT+TGG 0.390646 3_2:-26924755 Msa0401370:three_prime_UTR
GGGAGTGGAGGTGGTGGTGA+TGG 0.394284 3_2:-26928397 Msa0401370:CDS
AAGAGATAGGTTGGACGTTA+AGG 0.394682 3_2:-26924585 Msa0401370:three_prime_UTR
TGGTGGTGATGGTGGTGGGG+GGG 0.396626 3_2:-26928386 Msa0401370:CDS
ATCTCAACCAGTGTAGCATA+TGG 0.402251 3_2:-26925437 Msa0401370:CDS
GGGTTTCCAGGGAGTGGAGG+TGG 0.402523 3_2:-26928406 Msa0401370:CDS
AAGAGTGTTCTGGCTGAGAC+TGG 0.405954 3_2:-26928318 Msa0401370:CDS
GGTTTCTCAACAGGTGGCTT+TGG 0.409770 3_2:-26926082 Msa0401370:intron
AGAGAGATTAGTTGGTTGGT+TGG 0.418117 3_2:+26928690 None:intergenic
AGAAGAATTTAGAAACTTCA+TGG 0.420109 3_2:+26928530 None:intergenic
AAAGAGAGAGATTAGTTGGT+TGG 0.423180 3_2:+26928686 None:intergenic
AGAAATAGAGAAGAGTGTTC+TGG 0.423985 3_2:-26928328 Msa0401370:CDS
TCTCAACAGGTGGCTTTGGC+AGG 0.431996 3_2:-26926078 Msa0401370:intron
ATGAGTTCAATTCAAAGCTT+GGG 0.435415 3_2:-26924754 Msa0401370:three_prime_UTR
GGCGGGTTTCCAGGGAGTGG+AGG 0.439477 3_2:-26928409 Msa0401370:CDS
TCTCAGCGGGCAATGGAGGC+GGG 0.440741 3_2:-26928426 Msa0401370:CDS
TGTTGCTGTTAAGGCGGGGA+GGG 0.447851 3_2:-26928262 Msa0401370:CDS
AGGGTTTAAGGAAAGGTTGT+TGG 0.448786 3_2:-26928166 Msa0401370:CDS
TAAGAGTTGACAACTTAGTT+GGG 0.460215 3_2:+26924548 None:intergenic
AAATCATTTGCATCATTCTC+CGG 0.462649 3_2:-26928461 Msa0401370:CDS
ACAAAGAATAGGTGCTATAG+TGG 0.469138 3_2:-26926037 Msa0401370:intron
AGTTGGAACCGGTGCTTCAC+TGG 0.470168 3_2:-26925916 Msa0401370:intron
ATAAGTCCAGCACTAATTGC+AGG 0.470510 3_2:+26926253 None:intergenic
TTGGCTGTTGCTGTTAAGGC+GGG 0.475087 3_2:-26928267 Msa0401370:CDS
TCTCAATACTCAAATGGCTA+TGG 0.478566 3_2:-26928662 Msa0401370:five_prime_UTR
AAAATGGAGGGTCTAAGTGT+GGG 0.485358 3_2:+26928722 None:intergenic
GTTTCCATGTCTTTCTCAGC+GGG 0.489070 3_2:-26928439 Msa0401370:CDS
TTTCCAGGGAGTGGAGGTGG+TGG 0.489818 3_2:-26928403 Msa0401370:CDS
ATGTCTTTCTCAGCGGGCAA+TGG 0.489826 3_2:-26928433 Msa0401370:CDS
TATACACTTCTACAAAGAAT+AGG 0.490986 3_2:-26926048 Msa0401370:CDS
AGAAAATTTCACTAAAGAGA+TGG 0.492493 3_2:-26927251 Msa0401370:CDS
TATCTTGTCATGCAAGGTAA+TGG 0.494514 3_2:+26924789 None:intergenic
GGGGCAAAGCTGTTCGTAGT+TGG 0.495711 3_2:-26925933 Msa0401370:CDS
TGCCTTGATCAATGCACAAA+AGG 0.497042 3_2:-26925498 Msa0401370:CDS
CCTCCTCCTGCAATTAGTGC+TGG 0.497096 3_2:-26926259 Msa0401370:CDS
GGAGGCGGGTTTCCAGGGAG+TGG 0.500171 3_2:-26928412 Msa0401370:CDS
GGTTGGAGTCCAGAAGATAA+AGG 0.501111 3_2:-26924821 Msa0401370:CDS
AAGCTGTTCGTAGTTGGAAC+CGG 0.502348 3_2:-26925927 Msa0401370:CDS
AGGTGGCTGTTAAAATTTGG+AGG 0.502551 3_2:-26928186 Msa0401370:CDS
GCTGAGAAAGACATGGAAAC+CGG 0.503241 3_2:+26928442 None:intergenic
TTAACGTCCAACCTATCTCT+TGG 0.505533 3_2:+26924587 None:intergenic
GAACAAGTGTGGTGAAATGT+TGG 0.508561 3_2:+26928630 None:intergenic
GGCTGAGACTGGAAGGTCGA+TGG 0.512699 3_2:-26928307 Msa0401370:CDS
TTATAAGCCAAGAGATAGGT+TGG 0.513547 3_2:-26924594 Msa0401370:three_prime_UTR
TCACCACCACCTCCACTCCC+TGG 0.514176 3_2:+26928400 None:intergenic
GCAATGGAGGCGGGTTTCCA+GGG 0.515014 3_2:-26928417 Msa0401370:CDS
TTAAGAGAAACAGTGGGAGC+AGG 0.517008 3_2:+26926283 None:intergenic
GAATTTAGAAACTTCATGGC+GGG 0.526139 3_2:+26928534 None:intergenic
CTGTTGCTGTTAAGGCGGGG+AGG 0.533728 3_2:-26928263 Msa0401370:CDS
TGGTAGTTGTTAGCAACCTC+AGG 0.535941 3_2:-26925406 Msa0401370:intron
AAATGATTTGGCATGAAAGT+TGG 0.536610 3_2:+26928475 None:intergenic
CGTGTATACCAGTGAAGCAC+CGG 0.536823 3_2:+26925908 None:intergenic
AACTTCATGGCGGGCTGTGA+TGG 0.537475 3_2:+26928543 None:intergenic
AATTTGGAGGGTTTAAGGAA+AGG 0.537593 3_2:-26928173 Msa0401370:CDS
ATCAGGTATCAAGTACTAGC+AGG 0.538106 3_2:-26925065 Msa0401370:intron
TCTTTCTCAGCGGGCAATGG+AGG 0.539993 3_2:-26928430 Msa0401370:CDS
TCTCAACCAGTGTAGCATAT+GGG 0.543058 3_2:-26925436 Msa0401370:CDS
GGGAGATGAATGATTGAGCT+TGG 0.545705 3_2:+26928504 None:intergenic
AGGCAGCTGCAGAGTTGGAG+CGG 0.551037 3_2:-26927279 Msa0401370:CDS
GTAAATCCCATATGCTACAC+TGG 0.555578 3_2:+26925430 None:intergenic
TTTGGCTGTTGCTGTTAAGG+CGG 0.558967 3_2:-26928268 Msa0401370:CDS
GTAAAGAAGAATGGCTGTAG+TGG 0.563116 3_2:+26928575 None:intergenic
GGGTTCCTGGTTCGATAGTG+CGG 0.567475 3_2:-26928242 Msa0401370:CDS
GGCATGAAAGTTGGTGCAGT+GGG 0.571380 3_2:+26928484 None:intergenic
GTGTTCTGGCTGAGACTGGA+AGG 0.573832 3_2:-26928314 Msa0401370:CDS
CCAGCACTAATTGCAGGAGG+AGG 0.574932 3_2:+26926259 None:intergenic
TTGTCATGCAAGGTAATGGT+TGG 0.574947 3_2:+26924793 None:intergenic
CCATCTCTTATGCAGCGTAA+CGG 0.578736 3_2:-26925954 Msa0401370:intron
TATATATATCTTGTCATGCA+AGG 0.580979 3_2:+26924783 None:intergenic
AACCTCCGCACTATCGAACC+AGG 0.581990 3_2:+26928237 None:intergenic
TATATCTTTGAGTAGGTGGG+TGG 0.584566 3_2:-26924857 Msa0401370:intron
AGAACTGCAAATACTTATTG+GGG 0.585474 3_2:-26924966 Msa0401370:CDS
AGGAGGTTTAAGAGAAACAG+TGG 0.589294 3_2:+26926276 None:intergenic
GGTGGCTGTTAAAATTTGGA+GGG 0.589646 3_2:-26928185 Msa0401370:CDS
CGGGCTGTGATGGTGTAGCT+TGG 0.591128 3_2:+26928553 None:intergenic
TAGCAGGAATTATTGAGCAA+CGG 0.592464 3_2:-26925049 Msa0401370:CDS
ATCTCTTATGCAGCGTAACG+GGG 0.596886 3_2:-26925952 Msa0401370:intron
AAATGGAGGGTCTAAGTGTG+GGG 0.603040 3_2:+26928723 None:intergenic
TGTAGCTTGGTAAAGAAGAA+TGG 0.622312 3_2:+26928566 None:intergenic
GGTTTCCATGTCTTTCTCAG+CGG 0.622323 3_2:-26928440 Msa0401370:CDS
AGGAGTCAGTTGTGTTCAGG+TGG 0.622724 3_2:-26928203 Msa0401370:CDS
AATGGAGGGTCTAAGTGTGG+GGG 0.624262 3_2:+26928724 None:intergenic
TGTTGTTGTTATCTTCACCA+AGG 0.630917 3_2:-26928106 Msa0401370:intron
TGTAGCATATGGGATTTACA+TGG 0.636490 3_2:-26925426 Msa0401370:CDS
ATGGAGGGTCTAAGTGTGGG+GGG 0.640956 3_2:+26928725 None:intergenic
GTGTGGTGAAATGTTGGAGA+AGG 0.645936 3_2:+26928636 None:intergenic
ATTGCCCGCTGAGAAAGACA+TGG 0.652882 3_2:+26928435 None:intergenic
TGGCTGTTGCTGTTAAGGCG+GGG 0.657405 3_2:-26928266 Msa0401370:CDS
ACAGCAACAGCCAAATCCGT+CGG 0.658539 3_2:+26928276 None:intergenic
TTCCTGGTTCGATAGTGCGG+AGG 0.658794 3_2:-26928239 Msa0401370:CDS
TGGCATGAAAGTTGGTGCAG+TGG 0.663533 3_2:+26928483 None:intergenic
GGAGGTTTAAGAGAAACAGT+GGG 0.664978 3_2:+26926277 None:intergenic
AGTCCAGCACTAATTGCAGG+AGG 0.693475 3_2:+26926256 None:intergenic
GTGTGATGAGTGAACAAGTG+TGG 0.730371 3_2:+26928619 None:intergenic
AGAATTTAGAAACTTCATGG+CGG 0.742570 3_2:+26928533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACACTAAATTGTAATAA+TGG + chr3_2:26925213-26925232 None:intergenic 15.0%
!! ATAATATAGTATCTAAACAT+AGG + chr3_2:26925273-26925292 None:intergenic 15.0%
!!! ATTTTTTTGGTAATTTGTAA+AGG + chr3_2:26925698-26925717 None:intergenic 15.0%
!!! TCAAATTGTTATTAATCATT+AGG - chr3_2:26926156-26926175 Msa0401370:intron 15.0%
!! AATTTAATAATTAGCATGAA+TGG - chr3_2:26926403-26926422 Msa0401370:intron 15.0%
!! ATTTAATAATTAGCATGAAT+GGG - chr3_2:26926404-26926423 Msa0401370:intron 15.0%
!!! TCTATTTGACAATTTAATTT+TGG + chr3_2:26926538-26926557 None:intergenic 15.0%
!! AAAAATGATTCATTAATAGA+TGG + chr3_2:26926772-26926791 None:intergenic 15.0%
!!! TTGATGTTTTCTTTTATTTA+AGG - chr3_2:26928185-26928204 Msa0401370:CDS 15.0%
!!! TATTTAAAGTATAGAGTGAA+AGG - chr3_2:26925295-26925314 Msa0401370:intron 20.0%
!! TTAGAATGTTTCTTGTTAAA+TGG - chr3_2:26925357-26925376 Msa0401370:intron 20.0%
!!! CTCTATTTTACTTGTTTTTT+AGG + chr3_2:26925394-26925413 None:intergenic 20.0%
!!! TCACTCTTTTAAGTAAATAA+TGG + chr3_2:26925942-26925961 None:intergenic 20.0%
!!! TTTGACAATTTAATTTTGGA+AGG + chr3_2:26926534-26926553 None:intergenic 20.0%
!! AAAGAATAAATGATGAAGAT+TGG + chr3_2:26926797-26926816 None:intergenic 20.0%
!! AAAAGTTTGAAGAAACTAAA+AGG + chr3_2:26927429-26927448 None:intergenic 20.0%
!! TAATCTACAATTATAGATGT+TGG + chr3_2:26927549-26927568 None:intergenic 20.0%
!! CTATAATTGTAGATTATAGA+TGG - chr3_2:26927553-26927572 Msa0401370:intron 20.0%
!!! AATAGTTTGTTGAAGAAAAA+TGG + chr3_2:26927910-26927929 None:intergenic 20.0%
!! TTTATATCCTCAAATTATTG+TGG - chr3_2:26928099-26928118 Msa0401370:intron 20.0%
!!! TGGTTCTTTCTTTTTTATTT+TGG - chr3_2:26928587-26928606 Msa0401370:five_prime_UTR 20.0%
!! TCTTTTTCTCAATACTCAAA+TGG - chr3_2:26924618-26924637 Msa0401370:three_prime_UTR 25.0%
! AGAAGAATTTAGAAACTTCA+TGG + chr3_2:26924759-26924778 None:intergenic 25.0%
!!! CTTTAAGCTGATGATTTTTT+TGG + chr3_2:26925711-26925730 None:intergenic 25.0%
! TCTGCAATGTAAAATAAAAG+TGG - chr3_2:26925804-26925823 Msa0401370:intron 25.0%
! AGAAAATTAGCCATATGTAA+TGG - chr3_2:26925967-26925986 Msa0401370:intron 25.0%
! AGAAAATTTCACTAAAGAGA+TGG - chr3_2:26926035-26926054 Msa0401370:intron 25.0%
! TTATTGTGTTAAATCAAAGC+AGG - chr3_2:26926310-26926329 Msa0401370:CDS 25.0%
! AAGTAACAAACTGAATAAGA+TGG + chr3_2:26926936-26926955 None:intergenic 25.0%
!!! TCAGTTTGTTACTTTATCTT+AGG - chr3_2:26926942-26926961 Msa0401370:intron 25.0%
! AAGAACTGATCATATATGTT+TGG + chr3_2:26927173-26927192 None:intergenic 25.0%
!! ATCAGTTCTTGTTGAATTTT+CGG - chr3_2:26927183-26927202 Msa0401370:intron 25.0%
! TATACACTTCTACAAAGAAT+AGG - chr3_2:26927238-26927257 Msa0401370:CDS 25.0%
! AAGGAAATAACTATTTGACT+TGG + chr3_2:26927295-26927314 None:intergenic 25.0%
!! AGTTATTTCCTTATAAGTGA+AGG - chr3_2:26927303-26927322 Msa0401370:intron 25.0%
!!! GCTTGCAATATTTTTTATTC+AGG - chr3_2:26927746-26927765 Msa0401370:intron 25.0%
!!! GCAATATTTTTTATTCAGGT+TGG - chr3_2:26927750-26927769 Msa0401370:intron 25.0%
!!! TTTTTTATTCAGGTTGGTAT+AGG - chr3_2:26927756-26927775 Msa0401370:intron 25.0%
! TTCTTGTGCATATACTTATT+CGG - chr3_2:26927964-26927983 Msa0401370:intron 25.0%
!!! CAGTTAGTATAAGTTTGTTT+TGG + chr3_2:26928283-26928302 None:intergenic 25.0%
! CAAAACAAACTTATACTAAC+TGG - chr3_2:26928281-26928300 Msa0401370:CDS 25.0%
! TTAGAACTGCAAATACTTAT+TGG - chr3_2:26928318-26928337 Msa0401370:CDS 25.0%
! TAGAACTGCAAATACTTATT+GGG - chr3_2:26928319-26928338 Msa0401370:CDS 25.0%
!! TATATTCTTCTTAGTTCTCA+TGG - chr3_2:26928399-26928418 Msa0401370:CDS 25.0%
! TTTGGTATATATCTTTGAGT+AGG - chr3_2:26928422-26928441 Msa0401370:CDS 25.0%
! TATATATATCTTGTCATGCA+AGG + chr3_2:26928506-26928525 None:intergenic 25.0%
! TTCATTCATAGAACTTTGAT+TGG - chr3_2:26928563-26928582 Msa0401370:five_prime_UTR 25.0%
!!! TTTTATTTTGGAAGTACACA+AGG - chr3_2:26928599-26928618 Msa0401370:five_prime_UTR 25.0%
!!! TTTATTTTGGAAGTACACAA+GGG - chr3_2:26928600-26928619 Msa0401370:five_prime_UTR 25.0%
!!! TTTTTTATAAGCCAAGAGAT+AGG - chr3_2:26928688-26928707 Msa0401370:five_prime_UTR 25.0%
AGAAAAAGAGAGAGATTAGT+TGG + chr3_2:26924607-26924626 None:intergenic 30.0%
AGAATTTAGAAACTTCATGG+CGG + chr3_2:26924756-26924775 None:intergenic 30.0%
! AAATGATTTGGCATGAAAGT+TGG + chr3_2:26924814-26924833 None:intergenic 30.0%
AAATCATTTGCATCATTCTC+CGG - chr3_2:26924825-26924844 Msa0401370:CDS 30.0%
GTTAAAATTTGGAGGGTTTA+AGG - chr3_2:26925108-26925127 Msa0401370:intron 30.0%
!! GTTCTTAACTAAGCTTGTTA+TGG - chr3_2:26925153-26925172 Msa0401370:intron 30.0%
! GTAATAATGGAAAGAAACCT+TGG + chr3_2:26925200-26925219 None:intergenic 30.0%
TTATGCAAAATGTACACTCT+TGG - chr3_2:26925472-26925491 Msa0401370:CDS 30.0%
TATGCAAAATGTACACTCTT+GGG - chr3_2:26925473-26925492 Msa0401370:CDS 30.0%
ACTAACTTTGACACACAAAT+TGG + chr3_2:26925535-26925554 None:intergenic 30.0%
! TAATTTGTAAAGGCGACAAA+AGG + chr3_2:26925688-26925707 None:intergenic 30.0%
ATCATCAGCTTAAAGTTTGT+AGG - chr3_2:26925716-26925735 Msa0401370:intron 30.0%
AAGTTTGTAGGACTTCTAAT+TGG - chr3_2:26925728-26925747 Msa0401370:intron 30.0%
TGTAAAATAAAAGTGGAACG+AGG - chr3_2:26925811-26925830 Msa0401370:intron 30.0%
GTAAAATAAAAGTGGAACGA+GGG - chr3_2:26925812-26925831 Msa0401370:intron 30.0%
AAAACTCATCATCCCAAATA+AGG + chr3_2:26925862-26925881 None:intergenic 30.0%
AGATTCCAACTTTGTAACTT+TGG + chr3_2:26925893-26925912 None:intergenic 30.0%
GACAAGATATCCATTACATA+TGG + chr3_2:26925980-26925999 None:intergenic 30.0%
! GTTTTCTACATGAACATTTG+TGG - chr3_2:26926269-26926288 Msa0401370:CDS 30.0%
AACACAATAAGCATCATTTG+CGG + chr3_2:26926300-26926319 None:intergenic 30.0%
TAAATCAAAGCAGGAAACAA+TGG - chr3_2:26926319-26926338 Msa0401370:CDS 30.0%
ACCTACTGTTCATGTAATTT+AGG - chr3_2:26926369-26926388 Msa0401370:intron 30.0%
AAATTACTGAGAACTTGAAC+TGG + chr3_2:26926435-26926454 None:intergenic 30.0%
! AGTTCAAGTTCTCAGTAATT+TGG - chr3_2:26926434-26926453 Msa0401370:intron 30.0%
! ATAATTAATCTTTTCCCGCT+AGG + chr3_2:26926717-26926736 None:intergenic 30.0%
! GTTACTTTATCTTAGGTAAC+AGG - chr3_2:26926949-26926968 Msa0401370:intron 30.0%
!! TAACAGGTTTTGTACTAGTT+TGG - chr3_2:26926977-26926996 Msa0401370:intron 30.0%
CTTATTGCCAAATTCTTCTA+TGG - chr3_2:26927051-26927070 Msa0401370:intron 30.0%
!!! TTAACCTGAAAAGCATTTTC+AGG + chr3_2:26927081-26927100 None:intergenic 30.0%
CTGATCATATATGTTTGGAT+CGG + chr3_2:26927168-26927187 None:intergenic 30.0%
AATAGAACGATGGAAACTAA+TGG + chr3_2:26927510-26927529 None:intergenic 30.0%
TTCACATGAAAATAGAACGA+TGG + chr3_2:26927520-26927539 None:intergenic 30.0%
! TATACTTATTCGGACTTTTG+AGG - chr3_2:26927974-26927993 Msa0401370:intron 30.0%
! ATACTTATTCGGACTTTTGA+GGG - chr3_2:26927975-26927994 Msa0401370:intron 30.0%
! AAGGATTTGTTTATGTGATC+AGG - chr3_2:26928204-26928223 Msa0401370:CDS 30.0%
AGAACTGCAAATACTTATTG+GGG - chr3_2:26928320-26928339 Msa0401370:CDS 30.0%
GTATATATCTTTGAGTAGGT+GGG - chr3_2:26928426-26928445 Msa0401370:CDS 30.0%
TATGAGTTCAATTCAAAGCT+TGG - chr3_2:26928531-26928550 Msa0401370:CDS 30.0%
ATGAGTTCAATTCAAAGCTT+GGG - chr3_2:26928532-26928551 Msa0401370:exon 30.0%
TTCATAGAACTTTGATTGGT+TGG - chr3_2:26928567-26928586 Msa0401370:five_prime_UTR 30.0%
TAAGAGTTGACAACTTAGTT+GGG + chr3_2:26928741-26928760 None:intergenic 30.0%
TGGTGACAGTTAAAAATGGA+GGG + chr3_2:26924579-26924598 None:intergenic 35.0%
! TTGGTGACAGTTAAAAATGG+AGG + chr3_2:26924580-26924599 None:intergenic 35.0%
!! TGGTTGGTGACAGTTAAAAA+TGG + chr3_2:26924583-26924602 None:intergenic 35.0%
! AAAGAGAGAGATTAGTTGGT+TGG + chr3_2:26924603-26924622 None:intergenic 35.0%
TCTCAATACTCAAATGGCTA+TGG - chr3_2:26924624-26924643 Msa0401370:three_prime_UTR 35.0%
TGTAGCTTGGTAAAGAAGAA+TGG + chr3_2:26924723-26924742 None:intergenic 35.0%
GAATTTAGAAACTTCATGGC+GGG + chr3_2:26924755-26924774 None:intergenic 35.0%
GGAGAATGATGCAAATGATT+TGG + chr3_2:26924826-26924845 None:intergenic 35.0%
!! AGAAATAGAGAAGAGTGTTC+TGG - chr3_2:26924958-26924977 Msa0401370:CDS 35.0%
TTCAGGTGGCTGTTAAAATT+TGG - chr3_2:26925097-26925116 Msa0401370:intron 35.0%
AATTTGGAGGGTTTAAGGAA+AGG - chr3_2:26925113-26925132 Msa0401370:intron 35.0%
! TGTTGTTGTTATCTTCACCA+AGG - chr3_2:26925180-26925199 Msa0401370:intron 35.0%
GATCTATGAACATGTTACTG+TGG - chr3_2:26925237-26925256 Msa0401370:intron 35.0%
ACCAGAATAGAACTTGCATT+TGG - chr3_2:26925447-26925466 Msa0401370:CDS 35.0%
ACCAAATGCAAGTTCTATTC+TGG + chr3_2:26925451-26925470 None:intergenic 35.0%
AAATGTACACTCTTGGGATT+AGG - chr3_2:26925479-26925498 Msa0401370:CDS 35.0%
TAAAGGCGACAAAAGGAATT+TGG + chr3_2:26925681-26925700 None:intergenic 35.0%
TTCCACCAAAGTTACAAAGT+TGG - chr3_2:26925885-26925904 Msa0401370:intron 35.0%
TTCCAACTTTGTAACTTTGG+TGG + chr3_2:26925890-26925909 None:intergenic 35.0%
! TGGATATCTTGTCTGTTTTC+AGG - chr3_2:26925987-26926006 Msa0401370:intron 35.0%
!!! GGATTTTGTTGTTGCTAATG+TGG - chr3_2:26926056-26926075 Msa0401370:CDS 35.0%
! CAATGGCATATGCAATTTTC+AGG - chr3_2:26926336-26926355 Msa0401370:intron 35.0%
ATTACATGAACAGTAGGTGA+AGG + chr3_2:26926367-26926386 None:intergenic 35.0%
GCCTAAATTACATGAACAGT+AGG + chr3_2:26926373-26926392 None:intergenic 35.0%
GTTATGAATGTCGGCATTTA+AGG + chr3_2:26926683-26926702 None:intergenic 35.0%
AAATGCCGACATTCATAACA+TGG - chr3_2:26926684-26926703 Msa0401370:intron 35.0%
TCTTGCCATGTTATGAATGT+CGG + chr3_2:26926692-26926711 None:intergenic 35.0%
AAAGCTAAAATGCGACATCA+AGG + chr3_2:26926836-26926855 None:intergenic 35.0%
AGGACATCCATAGAAGAATT+TGG + chr3_2:26927061-26927080 None:intergenic 35.0%
! ATGTCCTGAAAATGCTTTTC+AGG - chr3_2:26927074-26927093 Msa0401370:intron 35.0%
! TGAATTTTCGGTTTCTCAAC+AGG - chr3_2:26927195-26927214 Msa0401370:intron 35.0%
! ACAAAGAATAGGTGCTATAG+TGG - chr3_2:26927249-26927268 Msa0401370:CDS 35.0%
! AACATCCTAGCATATCCTTT+TGG - chr3_2:26927579-26927598 Msa0401370:intron 35.0%
ATTCACCAAAAGGATATGCT+AGG + chr3_2:26927587-26927606 None:intergenic 35.0%
AGAACGTTGAATTCACCAAA+AGG + chr3_2:26927597-26927616 None:intergenic 35.0%
GCACTCATGTTAGAAATTCA+TGG + chr3_2:26927728-26927747 None:intergenic 35.0%
TGTAGCATATGGGATTTACA+TGG - chr3_2:26927860-26927879 Msa0401370:intron 35.0%
GAAGAAAAATGGAATACCTG+AGG + chr3_2:26927899-26927918 None:intergenic 35.0%
TTGATTGATTGCTAACTGTC+TGG + chr3_2:26927941-26927960 None:intergenic 35.0%
! TACTTATTCGGACTTTTGAG+GGG - chr3_2:26927976-26927995 Msa0401370:intron 35.0%
ACGTCTTCAATATGAAGTGT+CGG + chr3_2:26928037-26928056 None:intergenic 35.0%
TCGACATCCACAATAATTTG+AGG + chr3_2:26928109-26928128 None:intergenic 35.0%
TAGCAGGAATTATTGAGCAA+CGG - chr3_2:26928237-26928256 Msa0401370:CDS 35.0%
! AATTATTGAGCAACGGATTC+TGG - chr3_2:26928244-26928263 Msa0401370:CDS 35.0%
! TCTTCTTAGTTCTCATGGTT+TGG - chr3_2:26928404-26928423 Msa0401370:CDS 35.0%
GGTATATATCTTTGAGTAGG+TGG - chr3_2:26928425-26928444 Msa0401370:CDS 35.0%
TTGGTTAAGCCTTTATCTTC+TGG + chr3_2:26928477-26928496 None:intergenic 35.0%
TATCTTGTCATGCAAGGTAA+TGG + chr3_2:26928500-26928519 None:intergenic 35.0%
TTATAAGCCAAGAGATAGGT+TGG - chr3_2:26928692-26928711 Msa0401370:five_prime_UTR 35.0%
CTAAGAGTTGACAACTTAGT+TGG + chr3_2:26928742-26928761 None:intergenic 35.0%
AAAATGGAGGGTCTAAGTGT+GGG + chr3_2:26924567-26924586 None:intergenic 40.0%
AAAAATGGAGGGTCTAAGTG+TGG + chr3_2:26924568-26924587 None:intergenic 40.0%
! AGAGAGATTAGTTGGTTGGT+TGG + chr3_2:26924599-26924618 None:intergenic 40.0%
GAACAAGTGTGGTGAAATGT+TGG + chr3_2:26924659-26924678 None:intergenic 40.0%
ATGGCTGTAGTGGTAGAATT+TGG + chr3_2:26924704-26924723 None:intergenic 40.0%
GTAAAGAAGAATGGCTGTAG+TGG + chr3_2:26924714-26924733 None:intergenic 40.0%
AGGTGGCTGTTAAAATTTGG+AGG - chr3_2:26925100-26925119 Msa0401370:intron 40.0%
GGTGGCTGTTAAAATTTGGA+GGG - chr3_2:26925101-26925120 Msa0401370:intron 40.0%
AGGGTTTAAGGAAAGGTTGT+TGG - chr3_2:26925120-26925139 Msa0401370:intron 40.0%
TGTTAGCAGAGGGATTTCAA+AGG + chr3_2:26925777-26925796 None:intergenic 40.0%
TTGAAATCCCTCTGCTAACA+AGG - chr3_2:26925777-26925796 Msa0401370:intron 40.0%
AGAAAGACCTTGTTAGCAGA+GGG + chr3_2:26925787-26925806 None:intergenic 40.0%
CAAATAAGGTAGTCCGTTTG+GGG + chr3_2:26925848-26925867 None:intergenic 40.0%
CCAAATAAGGTAGTCCGTTT+GGG + chr3_2:26925849-26925868 None:intergenic 40.0%
!! CCAAACGGACTACCTTATTT+GGG - chr3_2:26925847-26925866 Msa0401370:intron 40.0%
AAGTTGGAATCTCTCTCTAC+AGG - chr3_2:26925901-26925920 Msa0401370:intron 40.0%
TTTCTTGCGTATGTCTATCG+AGG - chr3_2:26926125-26926144 Msa0401370:intron 40.0%
TTCTTGCGTATGTCTATCGA+GGG - chr3_2:26926126-26926145 Msa0401370:intron 40.0%
TTTACCTCGATAGTTCAGCA+TGG - chr3_2:26926486-26926505 Msa0401370:intron 40.0%
TAACATGGCAAGAATCCTAG+CGG - chr3_2:26926699-26926718 Msa0401370:intron 40.0%
! TAGGTAACAGGCATTGTAAC+AGG - chr3_2:26926961-26926980 Msa0401370:intron 40.0%
GGAGGTTTAAGAGAAACAGT+GGG + chr3_2:26927012-26927031 None:intergenic 40.0%
AGGAGGTTTAAGAGAAACAG+TGG + chr3_2:26927013-26927032 None:intergenic 40.0%
ATAAGTCCAGCACTAATTGC+AGG + chr3_2:26927036-26927055 None:intergenic 40.0%
! ATTTTCGGTTTCTCAACAGG+TGG - chr3_2:26927198-26927217 Msa0401370:intron 40.0%
GGAGATGACCTTCACTTATA+AGG + chr3_2:26927314-26927333 None:intergenic 40.0%
! TCTCTGATTTTGCGAACTCT+TGG - chr3_2:26927467-26927486 Msa0401370:intron 40.0%
CTAATGGAGTTCCATATGCA+AGG + chr3_2:26927494-26927513 None:intergenic 40.0%
TCTGCAAACAATCGAGAAAG+TGG - chr3_2:26927614-26927633 Msa0401370:intron 40.0%
ACAATCGAGAAAGTGGACAT+AGG - chr3_2:26927621-26927640 Msa0401370:intron 40.0%
CAATCGAGAAAGTGGACATA+GGG - chr3_2:26927622-26927641 Msa0401370:intron 40.0%
TGCCTTGATCAATGCACAAA+AGG - chr3_2:26927788-26927807 Msa0401370:intron 40.0%
!! AGCCTTTTGTGCATTGATCA+AGG + chr3_2:26927793-26927812 None:intergenic 40.0%
ATCTCAACCAGTGTAGCATA+TGG - chr3_2:26927849-26927868 Msa0401370:intron 40.0%
TCTCAACCAGTGTAGCATAT+GGG - chr3_2:26927850-26927869 Msa0401370:intron 40.0%
GTAAATCCCATATGCTACAC+TGG + chr3_2:26927859-26927878 None:intergenic 40.0%
ATCAGGTATCAAGTACTAGC+AGG - chr3_2:26928221-26928240 Msa0401370:CDS 40.0%
!!! AGTTTGTTTTGGCGTAGCAA+TGG + chr3_2:26928272-26928291 None:intergenic 40.0%
TATATCTTTGAGTAGGTGGG+TGG - chr3_2:26928429-26928448 Msa0401370:CDS 40.0%
! TTGTCATGCAAGGTAATGGT+TGG + chr3_2:26928496-26928515 None:intergenic 40.0%
TTAACGTCCAACCTATCTCT+TGG + chr3_2:26928702-26928721 None:intergenic 40.0%
! AAGAGATAGGTTGGACGTTA+AGG - chr3_2:26928701-26928720 Msa0401370:five_prime_UTR 40.0%
AAATGGAGGGTCTAAGTGTG+GGG + chr3_2:26924566-26924585 None:intergenic 45.0%
GTGTGGTGAAATGTTGGAGA+AGG + chr3_2:26924653-26924672 None:intergenic 45.0%
GTGTGATGAGTGAACAAGTG+TGG + chr3_2:26924670-26924689 None:intergenic 45.0%
GGGAGATGAATGATTGAGCT+TGG + chr3_2:26924785-26924804 None:intergenic 45.0%
GCTGAGAAAGACATGGAAAC+CGG + chr3_2:26924847-26924866 None:intergenic 45.0%
GGTTTCCATGTCTTTCTCAG+CGG - chr3_2:26924846-26924865 Msa0401370:intron 45.0%
GTTTCCATGTCTTTCTCAGC+GGG - chr3_2:26924847-26924866 Msa0401370:intron 45.0%
! GGATTTGGCTGTTGCTGTTA+AGG - chr3_2:26925015-26925034 Msa0401370:CDS 45.0%
! TTTGGCTGTTGCTGTTAAGG+CGG - chr3_2:26925018-26925037 Msa0401370:CDS 45.0%
!!! AGTGCGGAGGTTTTTTGAGT+TGG - chr3_2:26925060-26925079 Msa0401370:CDS 45.0%
GAGCTCTATAACCAAGCTAG+TGG + chr3_2:26925637-26925656 None:intergenic 45.0%
TAGAGCTCAACCAAGCTTCT+TGG - chr3_2:26925649-26925668 Msa0401370:intron 45.0%
TTGGAACCTTCCAAGAAGCT+TGG + chr3_2:26925662-26925681 None:intergenic 45.0%
CAGAAAGACCTTGTTAGCAG+AGG + chr3_2:26925788-26925807 None:intergenic 45.0%
!! CCCAAACGGACTACCTTATT+TGG - chr3_2:26925846-26925865 Msa0401370:intron 45.0%
CCCAAATAAGGTAGTCCGTT+TGG + chr3_2:26925850-26925869 None:intergenic 45.0%
GTAGCAACTGCTAACAGACT+TGG - chr3_2:26926655-26926674 Msa0401370:intron 45.0%
AACATGGCAAGAATCCTAGC+GGG - chr3_2:26926700-26926719 Msa0401370:intron 45.0%
TGCGACATCAAGGAGATTAC+AGG + chr3_2:26926826-26926845 None:intergenic 45.0%
TTAAGAGAAACAGTGGGAGC+AGG + chr3_2:26927006-26927025 None:intergenic 45.0%
! GGTGCTATAGTGGTATGTGT+TGG - chr3_2:26927259-26927278 Msa0401370:CDS 45.0%
CCATCTCTTATGCAGCGTAA+CGG - chr3_2:26927332-26927351 Msa0401370:intron 45.0%
CATCTCTTATGCAGCGTAAC+GGG - chr3_2:26927333-26927352 Msa0401370:intron 45.0%
ATCTCTTATGCAGCGTAACG+GGG - chr3_2:26927334-26927353 Msa0401370:intron 45.0%
AAGCTGTTCGTAGTTGGAAC+CGG - chr3_2:26927359-26927378 Msa0401370:intron 45.0%
GAACTCTTGGTCCTTGCATA+TGG - chr3_2:26927480-26927499 Msa0401370:intron 45.0%
! GCTACACTGGTTGAGATTAC+AGG + chr3_2:26927846-26927865 None:intergenic 45.0%
TGGTAGTTGTTAGCAACCTC+AGG - chr3_2:26927880-26927899 Msa0401370:intron 45.0%
!! TTATTCGGACTTTTGAGGGG+TGG - chr3_2:26927979-26927998 Msa0401370:intron 45.0%
CGACGTATCAGTGTCATGTT+TGG - chr3_2:26928126-26928145 Msa0401370:CDS 45.0%
!! GTGGGTGGATTTTGCTAGAT+GGG - chr3_2:26928444-26928463 Msa0401370:CDS 45.0%
! GTGGATTTTGCTAGATGGGT+TGG - chr3_2:26928448-26928467 Msa0401370:CDS 45.0%
GGTTGGAGTCCAGAAGATAA+AGG - chr3_2:26928465-26928484 Msa0401370:CDS 45.0%
AATGGAGGGTCTAAGTGTGG+GGG + chr3_2:26924565-26924584 None:intergenic 50.0%
!! GGCATGAAAGTTGGTGCAGT+GGG + chr3_2:26924805-26924824 None:intergenic 50.0%
!! TGGCATGAAAGTTGGTGCAG+TGG + chr3_2:26924806-26924825 None:intergenic 50.0%
ATTGCCCGCTGAGAAAGACA+TGG + chr3_2:26924854-26924873 None:intergenic 50.0%
ATGTCTTTCTCAGCGGGCAA+TGG - chr3_2:26924853-26924872 Msa0401370:intron 50.0%
!! AAGAGTGTTCTGGCTGAGAC+TGG - chr3_2:26924968-26924987 Msa0401370:CDS 50.0%
! GTCGATGGAGAGTTTTCCGA+CGG - chr3_2:26924994-26925013 Msa0401370:CDS 50.0%
!! GGAGAGTTTTCCGACGGATT+TGG - chr3_2:26925000-26925019 Msa0401370:CDS 50.0%
ACAGCAACAGCCAAATCCGT+CGG + chr3_2:26925013-26925032 None:intergenic 50.0%
! TTGGCTGTTGCTGTTAAGGC+GGG - chr3_2:26925019-26925038 Msa0401370:CDS 50.0%
!!! GCGGAGGTTTTTTGAGTTGG+AGG - chr3_2:26925063-26925082 Msa0401370:CDS 50.0%
TGGAGGAGTCAGTTGTGTTC+AGG - chr3_2:26925080-26925099 Msa0401370:intron 50.0%
AGGAGTCAGTTGTGTTCAGG+TGG - chr3_2:26925083-26925102 Msa0401370:intron 50.0%
GTCGCGTGTCAGACAGAAAT+TGG + chr3_2:26925609-26925628 None:intergenic 50.0%
GCTCAACCAAGCTTCTTGGA+AGG - chr3_2:26925653-26925672 Msa0401370:intron 50.0%
!! TTTTCAGGCAGCTGCAGAGT+TGG - chr3_2:26926002-26926021 Msa0401370:intron 50.0%
GATGCCATGCTGAACTATCG+AGG + chr3_2:26926493-26926512 None:intergenic 50.0%
AGTCCAGCACTAATTGCAGG+AGG + chr3_2:26927033-26927052 None:intergenic 50.0%
GGTTTCTCAACAGGTGGCTT+TGG - chr3_2:26927204-26927223 Msa0401370:intron 50.0%
CCGTTACGCTGCATAAGAGA+TGG + chr3_2:26927335-26927354 None:intergenic 50.0%
CGTGTATACCAGTGAAGCAC+CGG + chr3_2:26927381-26927400 None:intergenic 50.0%
!! GGTGGGTGGATTTTGCTAGA+TGG - chr3_2:26928443-26928462 Msa0401370:CDS 50.0%
ATGGAGGGTCTAAGTGTGGG+GGG + chr3_2:26924564-26924583 None:intergenic 55.0%
!! AACTTCATGGCGGGCTGTGA+TGG + chr3_2:26924746-26924765 None:intergenic 55.0%
TCTTTCTCAGCGGGCAATGG+AGG - chr3_2:26924856-26924875 Msa0401370:intron 55.0%
! GTGTTCTGGCTGAGACTGGA+AGG - chr3_2:26924972-26924991 Msa0401370:CDS 55.0%
! TGGCTGTTGCTGTTAAGGCG+GGG - chr3_2:26925020-26925039 Msa0401370:CDS 55.0%
! TGTTGCTGTTAAGGCGGGGA+GGG - chr3_2:26925024-26925043 Msa0401370:CDS 55.0%
! GGGTTCCTGGTTCGATAGTG+CGG - chr3_2:26925044-26925063 Msa0401370:CDS 55.0%
! TTCCTGGTTCGATAGTGCGG+AGG - chr3_2:26925047-26925066 Msa0401370:CDS 55.0%
AACCTCCGCACTATCGAACC+AGG + chr3_2:26925052-26925071 None:intergenic 55.0%
CCAGCACTAATTGCAGGAGG+AGG + chr3_2:26927030-26927049 None:intergenic 55.0%
CCTCCTCCTGCAATTAGTGC+TGG - chr3_2:26927027-26927046 Msa0401370:intron 55.0%
!! TCTCAACAGGTGGCTTTGGC+AGG - chr3_2:26927208-26927227 Msa0401370:intron 55.0%
GGGGCAAAGCTGTTCGTAGT+TGG - chr3_2:26927353-26927372 Msa0401370:intron 55.0%
AGTTGGAACCGGTGCTTCAC+TGG - chr3_2:26927370-26927389 Msa0401370:intron 55.0%
! CGGGCTGTGATGGTGTAGCT+TGG + chr3_2:26924736-26924755 None:intergenic 60.0%
TTCTCAGCGGGCAATGGAGG+CGG - chr3_2:26924859-26924878 Msa0401370:intron 60.0%
! GCAATGGAGGCGGGTTTCCA+GGG - chr3_2:26924869-26924888 Msa0401370:intron 60.0%
TTTCCAGGGAGTGGAGGTGG+TGG - chr3_2:26924883-26924902 Msa0401370:intron 60.0%
!! AGTGGAGGTGGTGGTGATGG+TGG - chr3_2:26924892-26924911 Msa0401370:intron 60.0%
!! GAGGTGGTGGTGATGGTGGT+GGG - chr3_2:26924896-26924915 Msa0401370:intron 60.0%
!! AGGTGGTGGTGATGGTGGTG+GGG - chr3_2:26924897-26924916 Msa0401370:intron 60.0%
GGCTGAGACTGGAAGGTCGA+TGG - chr3_2:26924979-26924998 Msa0401370:CDS 60.0%
! CTGTTGCTGTTAAGGCGGGG+AGG - chr3_2:26925023-26925042 Msa0401370:CDS 60.0%
CGCGACAGTGTCCACTAGCT+TGG - chr3_2:26925623-26925642 Msa0401370:intron 60.0%
AGGCAGCTGCAGAGTTGGAG+CGG - chr3_2:26926007-26926026 Msa0401370:intron 60.0%
TCTCAGCGGGCAATGGAGGC+GGG - chr3_2:26924860-26924879 Msa0401370:intron 65.0%
! GGCAATGGAGGCGGGTTTCC+AGG - chr3_2:26924868-26924887 Msa0401370:intron 65.0%
GGGTTTCCAGGGAGTGGAGG+TGG - chr3_2:26924880-26924899 Msa0401370:intron 65.0%
TCACCACCACCTCCACTCCC+TGG + chr3_2:26924889-26924908 None:intergenic 65.0%
! GGGAGTGGAGGTGGTGGTGA+TGG - chr3_2:26924889-26924908 Msa0401370:intron 65.0%
!! GGAGGTGGTGGTGATGGTGG+TGG - chr3_2:26924895-26924914 Msa0401370:intron 65.0%
!! GGTGGTGGTGATGGTGGTGG+GGG - chr3_2:26924898-26924917 Msa0401370:intron 65.0%
!! GTGGTGGTGATGGTGGTGGG+GGG - chr3_2:26924899-26924918 Msa0401370:intron 65.0%
!! TGGTGGTGATGGTGGTGGGG+GGG - chr3_2:26924900-26924919 Msa0401370:intron 65.0%
GTTAAGGCGGGGAGGGTTCC+TGG - chr3_2:26925031-26925050 Msa0401370:CDS 65.0%
GGGTCTCCTCACGCCCCAAA+CGG - chr3_2:26925832-26925851 Msa0401370:intron 65.0%
! GGTAGTCCGTTTGGGGCGTG+AGG + chr3_2:26925841-26925860 None:intergenic 65.0%
! GGAGGCGGGTTTCCAGGGAG+TGG - chr3_2:26924874-26924893 Msa0401370:intron 70.0%
! GGCGGGTTTCCAGGGAGTGG+AGG - chr3_2:26924877-26924896 Msa0401370:intron 70.0%
!! GATGGTGGTGGGGGGGACGA+CGG - chr3_2:26924907-26924926 Msa0401370:intron 70.0%
CGACGGTGGAGGTGGGGAAG+AGG - chr3_2:26924924-26924943 Msa0401370:intron 70.0%
GGGGGGACGACGGTGGAGGT+GGG - chr3_2:26924917-26924936 Msa0401370:intron 75.0%
GGGGGACGACGGTGGAGGTG+GGG - chr3_2:26924918-26924937 Msa0401370:intron 75.0%
!!! GGTGGTGGGGGGGACGACGG+TGG - chr3_2:26924910-26924929 Msa0401370:intron 80.0%
! GGTGGGGGGGACGACGGTGG+AGG - chr3_2:26924913-26924932 Msa0401370:intron 80.0%
! GGGGGGGACGACGGTGGAGG+TGG - chr3_2:26924916-26924935 Msa0401370:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 26924539 26928769 26924539 ID=Msa0401370;Name=Msa0401370
chr3_2 mRNA 26924539 26928769 26924539 ID=Msa0401370-mRNA-1;Parent=Msa0401370;Name=Msa0401370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=219|1|1|1|0.87|0.77|9|218|350
chr3_2 exon 26924539 26924687 26924539 ID=Msa0401370-mRNA-1:exon:5624;Parent=Msa0401370-mRNA-1
chr3_2 exon 26924747 26924864 26924747 ID=Msa0401370-mRNA-1:exon:5623;Parent=Msa0401370-mRNA-1
chr3_2 exon 26924957 26925082 26924957 ID=Msa0401370-mRNA-1:exon:5622;Parent=Msa0401370-mRNA-1
chr3_2 exon 26925407 26925540 26925407 ID=Msa0401370-mRNA-1:exon:5621;Parent=Msa0401370-mRNA-1
chr3_2 exon 26925917 26925961 26925917 ID=Msa0401370-mRNA-1:exon:5620;Parent=Msa0401370-mRNA-1
chr3_2 exon 26926038 26926091 26926038 ID=Msa0401370-mRNA-1:exon:5619;Parent=Msa0401370-mRNA-1
chr3_2 exon 26926213 26926344 26926213 ID=Msa0401370-mRNA-1:exon:5618;Parent=Msa0401370-mRNA-1
chr3_2 exon 26927231 26927299 26927231 ID=Msa0401370-mRNA-1:exon:5617;Parent=Msa0401370-mRNA-1
chr3_2 exon 26928107 26928769 26928107 ID=Msa0401370-mRNA-1:exon:5616;Parent=Msa0401370-mRNA-1
chr3_2 five_prime_UTR 26928551 26928769 26928551 ID=Msa0401370-mRNA-1:five_prime_utr;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26928107 26928550 26928107 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26927231 26927299 26927231 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26926213 26926344 26926213 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26926038 26926091 26926038 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26925917 26925961 26925917 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26925407 26925540 26925407 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26924957 26925082 26924957 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 CDS 26924816 26924864 26924816 ID=Msa0401370-mRNA-1:cds;Parent=Msa0401370-mRNA-1
chr3_2 three_prime_UTR 26924747 26924815 26924747 ID=Msa0401370-mRNA-1:three_prime_utr;Parent=Msa0401370-mRNA-1
chr3_2 three_prime_UTR 26924539 26924687 26924539 ID=Msa0401370-mRNA-1:three_prime_utr;Parent=Msa0401370-mRNA-1
Gene Sequence

>Msa0401370

ATGAAGTTTCTAAATTCTTCTCTTCCAAGCTCAATCATTCATCTCCCACTGCACCAACTTTCATGCCAAATCATTTGCATCATTCTCCGGTTTCCATGTCTTTCTCAGCGGGCAATGGAGGCGGGTTTCCAGGGAGTGGAGGTGGTGGTGATGGTGGTGGGGGGGACGACGGTGGAGGTGGGGAAGAGGAAGAAAGAGATAGAAATAGAGAAGAGTGTTCTGGCTGAGACTGGAAGGTCGATGGAGAGTTTTCCGACGGATTTGGCTGTTGCTGTTAAGGCGGGGAGGGTTCCTGGTTCGATAGTGCGGAGGTTTTTTGAGTTGGAGGAGTCAGTTGTGTTCAGGTGGCTGTTAAAATTTGGAGGGTTTAAGGAAAGGTTGTTGGCTGATGATTTGTTCTTAACTAAGCTTGTTATGGAATGTGTTGTTGTTATCTTCACCAAGGCAGCTGCAGAGTTGGAGCGGCGTAAAGAAAATTTCACTAAAGAGATGGATTTTGTTGTTGCTAATGTGGTAACAGGCATTGTAACAGGTTTTGTACTAGTTTGGTTTCCTGCTCCCACTGTTTCTCTTAAACCTCCTCCTGCAATTAGTGCTGGACTTATTGCCAAATTCTTCTATGGATGTCCTGAAAATGCTTTTCAGGTGGCTTTGGCAGGAACATCATATACACTTCTACAAAGAATAGGTGCTATAGTGCGTAACGGGGCAAAGCTGTTCGTAGTTGGAACCGGTGCTTCACTGGTTGGTATAGGTATAACAAATGCCTTGATCAATGCACAAAAGGCTGTAAATAAAGCATTTACTGTTGAGAATTTACCTGTAATCTCAACCAGTGTAGCATATGGGATTTACATGGTAGTTGTTAGCAACCTCAGGTATCAAGTACTAGCAGGAATTATTGAGCAACGGATTCTGGAACCATTGCTACGCCAAAACAAACTTATACTAACTGGAGCATACTTTATTATTAGAACTGCAAATACTTATTGGGGATCACTACTGTGGGTGGATTTTGCTAGATGGGTTGGAGTCCAGAAGATAAAGGCTTAA

Protein sequence

>Msa0401370

MKFLNSSLPSSIIHLPLHQLSCQIICIILRFPCLSQRAMEAGFQGVEVVVMVVGGTTVEVGKRKKEIEIEKSVLAETGRSMESFPTDLAVAVKAGRVPGSIVRRFFELEESVVFRWLLKFGGFKERLLADDLFLTKLVMECVVVIFTKAAAELERRKENFTKEMDFVVANVVTGIVTGFVLVWFPAPTVSLKPPPAISAGLIAKFFYGCPENAFQVALAGTSYTLLQRIGAIVRNGAKLFVVGTGASLVGIGITNALINAQKAVNKAFTVENLPVISTSVAYGIYMVVVSNLRYQVLAGIIEQRILEPLLRQNKLILTGAYFIIRTANTYWGSLLWVDFARWVGVQKIKA*